Query psy10894
Match_columns 364
No_of_seqs 166 out of 1106
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 21:10:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 8E-182 3E-186 1332.0 35.8 364 1-364 38-403 (415)
2 2p02_A S-adenosylmethionine sy 100.0 2E-180 8E-185 1318.8 34.5 363 1-363 34-396 (396)
3 3iml_A S-adenosylmethionine sy 100.0 7E-180 2E-184 1315.1 34.1 358 1-362 24-384 (399)
4 1p7l_A S-adenosylmethionine sy 100.0 1E-179 4E-184 1309.5 31.8 357 1-362 18-374 (383)
5 3s82_A S-adenosylmethionine sy 100.0 2E-179 7E-184 1316.0 29.2 358 1-362 25-401 (407)
6 4hpv_A S-adenosylmethionine sy 96.9 0.0076 2.6E-07 60.5 12.6 264 31-321 87-389 (407)
7 2gjh_A Designed protein; oblig 38.4 26 0.0009 25.9 3.2 38 46-83 18-55 (62)
8 3kxy_T EXSE; type-three secret 33.0 24 0.00083 26.4 2.3 21 249-273 17-37 (66)
9 2w42_A PIWI, putative uncharac 32.0 31 0.0011 34.2 3.7 25 116-140 385-409 (427)
10 3pvv_A Chromosomal replication 28.1 41 0.0014 27.2 3.1 28 304-331 1-28 (101)
11 1qys_A TOP7; alpha-beta, novel 25.5 28 0.00096 28.0 1.6 38 46-83 62-99 (106)
12 1mp9_A Tata-binding protein; t 24.0 68 0.0023 28.9 4.1 80 166-278 13-96 (198)
13 3r5l_A Deazaflavin-dependent n 22.2 64 0.0022 26.9 3.3 31 232-286 43-73 (122)
14 3mw9_A GDH 1, glutamate dehydr 20.9 1.4E+02 0.0048 30.8 6.1 96 179-274 97-227 (501)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=8.4e-182 Score=1332.00 Aligned_cols=364 Identities=58% Similarity=1.000 Sum_probs=347.4
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++++|||++||+|+++|++
T Consensus 38 icDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~~~gFd~~tc~Vl~~i~~ 117 (415)
T 3so4_A 38 MCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQ 117 (415)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGGGTEETTTCEEEEEEEE
T ss_pred HHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCcccCccCCceEEEEeccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecC
Q psy10894 81 QSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFAR 160 (364)
Q Consensus 81 QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~ 160 (364)
|||||+|||+..+..+++||||||||||||||||||||||||+|||+|++||+++||+|.+||||||+||||||+|++++
T Consensus 118 QSpDIaqGVd~~~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l~~LrPD~KtQVTveY~~~~ 197 (415)
T 3so4_A 118 QSQDIAKGVHVEKKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVE 197 (415)
T ss_dssp ECCC-----------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSSTTEEEEEEEEEEEEEEEET
T ss_pred CChhhhhccccccchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCCCeeccCcceEEEEEEEcCC
Confidence 99999999997544568999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCC
Q psy10894 161 GACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240 (364)
Q Consensus 161 ~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 240 (364)
|.++|+||+|||||+||++++++++|+++|+|+||+||+|++|++++|+||||||||||||||+||+|||||||||||||
T Consensus 198 g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrFViGGP~gDaGLTGRKIIVDTYG 277 (415)
T 3so4_A 198 GHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGPMGDAGLTGRKIIVDTYG 277 (415)
T ss_dssp TEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCCCSCTTTTSCEETTSCTTTTTTT
T ss_pred CCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCeEECCCcccccccCceEEEEccC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHc
Q psy10894 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRN 320 (364)
Q Consensus 241 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~ 320 (364)
||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||||||+++++++|.++|+++
T Consensus 278 G~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~TfGT~~~~~~~i~~~v~~~ 357 (415)
T 3so4_A 278 GWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKN 357 (415)
T ss_dssp TSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEEECSCCSSCHHHHHHHHHHH
T ss_pred CcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEEEEEeCCCCcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCCcchhhhccccCCCCCC--CCCCCCCCCCCC
Q psy10894 321 FDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI--FPWEVPKPLVID 364 (364)
Q Consensus 321 Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~--fpWE~~d~~~~~ 364 (364)
|||||++||++|+|++|||++||+||||||++ ||||+||+|++.
T Consensus 358 FdlrP~~Ii~~L~L~~PiY~~tAaYGHFGR~~~~f~WE~~d~l~~~ 403 (415)
T 3so4_A 358 FDMRPGMIIKELGLTRPIFQKTAVGGHFGRNDPDFKWEFPKELEIP 403 (415)
T ss_dssp CCCCHHHHHHHHTTTSSCCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred cCCCHHHHHHHcCCCCCcchhhcccccCCCCCCCCCCcCCcccCCC
Confidence 99999999999999999999999999999965 999999999863
No 2
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=2.5e-180 Score=1318.76 Aligned_cols=363 Identities=74% Similarity=1.248 Sum_probs=353.6
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||||+|+|||+++||++|++|||+++++|||++||+|+++|++
T Consensus 34 icDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~tc~Vl~~i~~ 113 (396)
T 2p02_A 34 ICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQ 113 (396)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGGGTEETTTSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCcccCCCCCceEEEEeccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecC
Q psy10894 81 QSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFAR 160 (364)
Q Consensus 81 QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~ 160 (364)
|||||+|||+..+..+++||||||||||||||||||||||||+|||+|++||+++||+|++|||||||||||||+|++++
T Consensus 114 QSpDIaqGV~~~~~~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l~~lrPD~KtQVTveY~~~~ 193 (396)
T 2p02_A 114 QSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDR 193 (396)
T ss_dssp CCHHHHHHHTTTCCGGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSSTTEEEEEEEEEEEEEEEET
T ss_pred CChhhhhcccccccccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCCCccCCCcceEEEEEEEcCC
Confidence 99999999995432246999999999999999999999999999999999999999999999999999999999998645
Q ss_pred CccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCC
Q psy10894 161 GACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240 (364)
Q Consensus 161 ~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 240 (364)
|.++|+||+|||||+||++++++++|+++|+|+||+||+|++|++++|+||||||||||||||+||+|||||||||||||
T Consensus 194 ~~~~P~rv~tvviS~QH~~~v~~~~lr~~i~e~vi~~v~p~~~ld~~t~~~INPtGrFviGGP~gDaGLTGRKIIVDTYG 273 (396)
T 2p02_A 194 GAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYG 273 (396)
T ss_dssp TEEEEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCCSCGGGTSCEETTSCTTTTTTT
T ss_pred CCcCceEEeEEEEeecCCCCCCHHHHHHHHHHHHHHHhcChhhcCCCeEEEECCCCCcccCCCcccccccCceEEEEcCC
Confidence 65689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHc
Q psy10894 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRN 320 (364)
Q Consensus 241 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~ 320 (364)
||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||||||+++++++|.++|+++
T Consensus 274 G~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~VdtfGT~~~~~~~i~~~v~~~ 353 (396)
T 2p02_A 274 GWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKN 353 (396)
T ss_dssp TSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEEEECTTCCSSCHHHHHHHHHHH
T ss_pred CccCCCCcccCCCCccccchhhHHHHHHHHHHHHhhccCCeeEEEEEeecCcccccEEEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCCcchhhhccccCCCCCCCCCCCCCCCCC
Q psy10894 321 FDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVI 363 (364)
Q Consensus 321 Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~fpWE~~d~~~~ 363 (364)
|||||++||++|+|++|||++||+||||||++||||+||++++
T Consensus 354 FdlrP~~Ii~~L~L~~PiY~~tAaYGHFGr~~fpWE~~d~~~~ 396 (396)
T 2p02_A 354 FDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY 396 (396)
T ss_dssp CCCCHHHHHHHHTTTSSCGGGGSSSCSSSSTTCGGGSCCCCCC
T ss_pred cCCCHHHHHHhcCCCCCcchhhccccCcCCCCCCcccccccCC
Confidence 9999999999999999999999999999999999999999874
No 3
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=6.7e-180 Score=1315.15 Aligned_cols=358 Identities=54% Similarity=0.916 Sum_probs=332.4
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++++|||++||+|+++|++
T Consensus 24 icDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~~~~gFd~~tc~Vl~~i~~ 103 (399)
T 3iml_A 24 VADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDK 103 (399)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC---------CCEEEEEEEE
T ss_pred HHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCCcccCccCCceEEEEeccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCC-CCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeec
Q psy10894 81 QSPDIAAGVHIN-RDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFA 159 (364)
Q Consensus 81 QS~dIa~gV~~~-~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~ 159 (364)
|||||+|||+.. .+.+++||||||||||||||||||||||||+|||+|++||+++||+|++||||||+||||||+|+
T Consensus 104 QSpDIaqGVd~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~l~~LrPD~KtQVTveY~-- 181 (399)
T 3iml_A 104 QSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYV-- 181 (399)
T ss_dssp ECC------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSSTTEEEEEEEEEEEEEE--
T ss_pred CChhHhhhhcccccchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCCCCeecCCCceEEEEEEE--
Confidence 999999999963 23368999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecC
Q psy10894 160 RGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY 239 (364)
Q Consensus 160 ~~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTY 239 (364)
++ +|+||+|||||+||++++++++|+++|+|+||+|++|++|++++|+||||||||||||||+||+||||||||||||
T Consensus 182 ~~--~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~vip~~~l~~~t~~~INPtGrFViGGP~gDaGLTGRKIIVDTY 259 (399)
T 3iml_A 182 DG--KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTY 259 (399)
T ss_dssp TT--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCCSCGGGTSCEETTSCTTTTTT
T ss_pred CC--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEeCCCcccccccccceeeecC
Confidence 35 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHH
Q psy10894 240 GGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQR 319 (364)
Q Consensus 240 GG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~ 319 (364)
|||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||||||+++++++|.++|++
T Consensus 260 GG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~P~Si~V~tfGT~~~~~~~i~~~v~~ 339 (399)
T 3iml_A 260 GGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVRE 339 (399)
T ss_dssp TTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCSSCSEEEEECTTCCSSCHHHHHHHHHH
T ss_pred CcccCCCCccccCCCccccchHHHHHHHHHHHHHHhhcccceeEEEEEEecCcccceEEEEEeCCCcccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhccCCcchhhhccccCCCCCC--CCCCCCCCCC
Q psy10894 320 NFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI--FPWEVPKPLV 362 (364)
Q Consensus 320 ~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~--fpWE~~d~~~ 362 (364)
+|||||++||++|+|++|||++||+||||||++ ||||+||+++
T Consensus 340 ~FdlrP~~Ii~~L~L~~PiY~~tAaYGHFGR~~~~f~WE~~d~v~ 384 (399)
T 3iml_A 340 HFDLRPKGIIQMLDLLRPIYEKTAAYGHFGREEPEFSWEAADKAL 384 (399)
T ss_dssp HCCCSHHHHHHHHTCCSSCCGGGGSSCSSSCCCTTCGGGCCTTHH
T ss_pred HcCCCHHHHHHHcCCCCCchhhhcCcCCCCCCCCCCCccCccHHH
Confidence 999999999999999999999999999999974 9999999864
No 4
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=1.3e-179 Score=1309.48 Aligned_cols=357 Identities=54% Similarity=0.889 Sum_probs=349.8
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||+++||++|++|||+++++|||++||+|+++|++
T Consensus 18 icDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~tc~v~~~i~~ 97 (383)
T 1p7l_A 18 IADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGK 97 (383)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGGGTEETTTSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcccCcCCCceEEEEeccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecC
Q psy10894 81 QSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFAR 160 (364)
Q Consensus 81 QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~ 160 (364)
|||||+|||+..+ .+++||||||||||||||||||||||||+|||+|++||+++||+|++|||||||||||||+|++
T Consensus 98 QSpdIa~GV~~~~-~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~~lrPD~KtQVtveY~~-- 174 (383)
T 1p7l_A 98 QSPDINQGVDRAD-PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDD-- 174 (383)
T ss_dssp CCHHHHHHHSCSS-TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSSTTEEEEEEEEEEEEEET--
T ss_pred CChHHhhhcCccc-ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCCccCCCccceEEEEEeC--
Confidence 9999999999543 2469999999999999999999999999999999999999999999999999999999999983
Q ss_pred CccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCC
Q psy10894 161 GACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240 (364)
Q Consensus 161 ~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 240 (364)
+ +|+||+|||||+||++++++++|+++|+|+||+||+|++|++++|+||||||||||||||+||+|||||||||||||
T Consensus 175 ~--~P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~v~p~~~ld~~t~~~iNPtGrFviGGP~gDaGLTGRKIIVDTYG 252 (383)
T 1p7l_A 175 G--KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYG 252 (383)
T ss_dssp T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTSCCCSCHHHHSCEETTCCTTTTTTT
T ss_pred C--ceeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCccccCCCeEEEECCCCCcccCCccccccccCceEEEEccC
Confidence 5 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHc
Q psy10894 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRN 320 (364)
Q Consensus 241 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~ 320 (364)
||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||||||+++++++|.++|+++
T Consensus 253 G~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~VdtfGT~~~~~~~i~~~v~~~ 332 (383)
T 1p7l_A 253 GMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREF 332 (383)
T ss_dssp TSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEECTTCCSCSEEEEECTTCBSSCHHHHHHHHHHH
T ss_pred CccCCCCcccCCCCCcccchhhhHHHHHHHHHHhhhccccceeeeeeeecccccccEEEEEecCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCCcchhhhccccCCCCCCCCCCCCCCCC
Q psy10894 321 FDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLV 362 (364)
Q Consensus 321 Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~fpWE~~d~~~ 362 (364)
|||||++||++|+|++|||++||+||||||++||||+||+++
T Consensus 333 FdlrP~~Ii~~L~L~~PiY~~tAaYGHFGr~~fpWE~~d~~~ 374 (383)
T 1p7l_A 333 FDLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQ 374 (383)
T ss_dssp CCCSHHHHHHHHTCCSSCCGGGGSSCSSSCTTSTTTCCSHHH
T ss_pred cCCCHHHHHHhcCCCCCchhhhccccCcCCCCCCccccchHH
Confidence 999999999999999999999999999999999999999764
No 5
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=1.9e-179 Score=1315.95 Aligned_cols=358 Identities=52% Similarity=0.868 Sum_probs=335.8
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeec---ccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEe
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSK---AVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLC 77 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~---a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~ 77 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++||+++|||++|++|||+++++|||++||+|+++
T Consensus 25 icDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY~~~~~gFd~~tc~Vl~~ 104 (407)
T 3s82_A 25 ICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIG 104 (407)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTCEEGGGTEETTTSEEEEE
T ss_pred HHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCCCCcccCcCCCceEEEEe
Confidence 699999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ecccChhhhhcccCCC---------CCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCC
Q psy10894 78 LDEQSPDIAAGVHINR---------DRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDT 148 (364)
Q Consensus 78 i~~QS~dIa~gV~~~~---------~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~ 148 (364)
|++|||||+|||+... ..+++||||||||||||||||||||||||+|||+|++||+++||+|++||||||+
T Consensus 105 i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rla~~Rk~g~l~~LrPD~ 184 (407)
T 3s82_A 105 IGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDG 184 (407)
T ss_dssp EEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTSSSTTEEEEE
T ss_pred cccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHHHHHHHHcCCCCeecCCC
Confidence 9999999999999641 1257999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEeecCCccceeeEEEEEEEeeeCCCCCHHH-HHHHHHHHHhhhhcCC----CCCCCCcEEEEcCCCCeEeccC
Q psy10894 149 KTQVTCEYCFARGACVPRRVHTVVVSVQHSEKIGLKE-LRAEVMSKVIKAVIPA----DYLDENTIVHINPCGNFILGGP 223 (364)
Q Consensus 149 KtQVtv~Y~~~~~~~~p~ri~tiviS~QH~~~v~~~~-l~~~i~e~Vi~~v~~~----~~~~~~t~~~INPtG~FviGGP 223 (364)
||||||+|+ +| +|+||+|||||+||++++++++ |+++|+|+||+||+|+ +|++++|+||||||||||||||
T Consensus 185 KtQVTveY~--~~--~P~rv~tvViStQH~~~v~~~~~l~~~i~e~VI~~vip~~~~~~~~~~~t~~~INPtGrFViGGP 260 (407)
T 3s82_A 185 KTQVTIEFE--DD--VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSSTRLLVNPTGKFVVGGP 260 (407)
T ss_dssp EEEEEEEEE--TT--EEEEEEEEEEEEEECTTCCTTTTHHHHHHHHTHHHHHHHHCCSSCBCTTCEEEESTTCCCCSCTT
T ss_pred ceEEEEEEE--CC--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCcccccccCCcCeEEEECCCCCeEECCC
Confidence 999999997 45 8999999999999999999999 9999999999999998 8899999999999999999999
Q ss_pred CCCcccCCceeEEecCCCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEec
Q psy10894 224 QVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDY 303 (364)
Q Consensus 224 ~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~Vdtf 303 (364)
+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||||
T Consensus 261 ~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~tf 340 (407)
T 3s82_A 261 MGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVAYAIGKAAPVGLFIETF 340 (407)
T ss_dssp TTSEEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEECT
T ss_pred cccccccCceEEEecCCCcccCCCccccCCCccccchhHHHHHHHHHHHHHHcccccceEEEEEEecccccceEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHcCCCCHHHHHHHhccCCcchhhhccccCCCCCC--CCCCCCCCCC
Q psy10894 304 GTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI--FPWEVPKPLV 362 (364)
Q Consensus 304 gT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~--fpWE~~d~~~ 362 (364)
||+++++++|.++|+++|||||++||++|+|++|||++||+||||||++ ||||+||+++
T Consensus 341 GT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~PiY~~tAaYGHFGR~~~~f~WE~~dkv~ 401 (407)
T 3s82_A 341 GTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRPIYAQTAAYGHFGRTDVELPWEQLNKVD 401 (407)
T ss_dssp TCCSSCHHHHHHHHHHHSCCSHHHHHHHTTCSSSCCGGGSSSCSSSCSSSCCGGGCCTTHH
T ss_pred CCCCCCHHHHHHHHHHhcCCCHHHHHHHcCCCCCcchhhcCcCCCCCCCCCCCccCCcHHH
Confidence 9999999999999999999999999999999999999999999999974 9999999864
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=96.93 E-value=0.0076 Score=60.50 Aligned_cols=264 Identities=17% Similarity=0.196 Sum_probs=151.4
Q ss_pred CeEEEEEEEeecc---c----ccHHHHHHH----HHhh-cCCCCCCCCCcCCc-eEEEEeecccChhhhhcccCCCCCCC
Q psy10894 31 GMVLLCGEITSKA---V----VDYQKVTRE----TIKH-IGYDDSSKGFDYKT-CSVMLCLDEQSPDIAAGVHINRDRDD 97 (364)
Q Consensus 31 ~~v~v~GEitt~a---~----vd~~~ivR~----~i~~-IGY~~~~~gfd~~~-c~V~~~i~~QS~dIa~gV~~~~~~~~ 97 (364)
=.|+++|..|+.. . +++.+|+.+ .|++ +.+ +|.++ ..|...|.+-|+|+..-..... .-
T Consensus 87 i~ii~~GRAT~~~~g~~~~~~iPv~~Ia~~AAk~~l~~~l~~------lD~e~~v~i~~~i~~GS~dL~~vf~r~~--~v 158 (407)
T 4hpv_A 87 IYIIVAGRATTEVKTESGIDQIPVGTIIIESVKEWIRNNFRY------LDAERHVIVDYKIGKGSSDLVGIFEASK--RV 158 (407)
T ss_dssp EEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHHHHHHCSS------CCTTTSEEEEEEEECCEEECC------C--CC
T ss_pred EEEEEecceEEEECCcccccccCHHHHHHHHHHHHHHHhccc------CCCCCcEEEEeeeCCCChhHHHHhcCCC--CC
Confidence 3578889887642 3 788887654 4444 222 45443 5677788999999886654321 13
Q ss_pred CCCCCcceeEEeecCCCCCCCchHH--HHHHHHHHHHH--HHHHcCCCceecCCCceeEEEEEeecCCccceeeEEEEEE
Q psy10894 98 VGAGDQGLMFGYATDETEECMPLTV--VLAHKLNQKVA--DLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVV 173 (364)
Q Consensus 98 ~GAGDQGimfGYA~~ET~~~MPl~i--~lAh~L~~~l~--~~Rk~~~~~~l~pD~KtQVtv~Y~~~~~~~~p~ri~tivi 173 (364)
..|-|-....||| ||+. -+.-.+-+.|. +++ ..+|+.+.|-|.-- + ++.+. +. +.|-.-.|
T Consensus 159 p~ANDTS~gVGyA--------PlS~~E~~Vl~~E~~Lns~~~k--~~~P~~GeDIKVMG-~--R~g~~-i~-LTvA~a~v 223 (407)
T 4hpv_A 159 PLSNDTSFGVGFA--------PLTKLEKLVYETERHLNSKQFK--AKLPEVGEDIKVMG-L--RRGNE-VD-LTIAMATI 223 (407)
T ss_dssp CBCSSCCEEEEEE--------SCCHHHHHHHHHHHHHHSHHHH--HHCTTEEEEEEEEE-E--EETTE-EE-EEEEEEEE
T ss_pred ccccccCceeccC--------CCCHHHHHHHHHHHHhcchhhh--hhCcccCCceEEEE-E--eeCCe-EE-EEEEhhhh
Confidence 4799999999998 4332 12222233332 233 34899999999753 3 32221 11 22222222
Q ss_pred EeeeCCCCC-HHHHHHHHHHHHhhhhcCCCCCCC-CcEEEEcCCCC-------eEecc---CCCCcccCCceeEEecC-C
Q psy10894 174 SVQHSEKIG-LKELRAEVMSKVIKAVIPADYLDE-NTIVHINPCGN-------FILGG---PQVDAGLTGRKIIVDTY-G 240 (364)
Q Consensus 174 S~QH~~~v~-~~~l~~~i~e~Vi~~v~~~~~~~~-~t~~~INPtG~-------FviGG---P~~DtGLTGRKiiVDTY-G 240 (364)
| .|-.+.+ .-+.++.+++.|-+-+ . ++-+. +.+++||..-. +++=| =+||.|.+||=.=|--- =
T Consensus 224 ~-r~v~~~~~Y~~~K~~v~~~v~~~a-~-~~~~~~~v~v~vNt~D~~~~g~~YLTvtGTSAE~GDdG~VGRGNRvNGLIT 300 (407)
T 4hpv_A 224 S-ELIEDVNHYINVKEQVRNQILDLA-S-KIAPGYNVRVYVNTGDKIDKNILYLTVTGTSAEHGDDGMTGRGNRGVGLIT 300 (407)
T ss_dssp G-GGCCSHHHHHHHHHHHHHHHHHHH-H-HHCTTSEEEEEECTTCBGGGTBCCEESSSCGGGGTCCEETTSSCCTTSSBC
T ss_pred h-hhhCCHHHHHHHHHHHHHHHHHHH-H-hcCCCCceEEEEecCCCcCCCceEEEecccccccCCCcccccCcccccccC
Confidence 2 3333322 1245555555444322 1 12223 67889998632 12223 26899999994321100 0
Q ss_pred CccccccccccCCCC-CccchhHhHHHHHHHHHHHHh--cccCeeEEEEEEEeccc--ceeeEEEEecCCCCCc----HH
Q psy10894 241 GWGAHGGGAFSGKDF-TKVDRSAAYAARWVAKSLVKA--GLCRRCLVQVSYAIGVA--EPISITLFDYGTSSRS----HK 311 (364)
Q Consensus 241 G~~~HGGGAfSGKDp-tKVDRSaAY~AR~iAKniVaa--GlA~~cevqlsYAIGva--~PvSi~VdtfgT~~~~----~~ 311 (364)
++-|-+==|-+||.| +-|=.-=..+|..||+.|++. | .++|.|.|---||.| +|....|...-...++ .+
T Consensus 301 p~RPMSmEAaAGKNPv~HVGKIYNvlA~~iA~~I~~~v~g-v~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~ 379 (407)
T 4hpv_A 301 PMRPMSLEATAGKNPVNHVGKLYNVLANLIANKIAQEVKD-VKFSQVQVLGQIGRPIDDPLIANVDVITYDGKLTDETKN 379 (407)
T ss_dssp TTSCCCCCCCTTSCTTTCHHHHHHHHHHHHHHHHHHHCTT-EEEEEEEEECCTTSBTTSCSEEEEEEEETTSCCCHHHHH
T ss_pred CCCCccccccCCCCCccchhHHHHHHHHHHHHHHHHhcCC-cceEEEEEecccCCCCCCCeEEEEEEecCCCCChHHHHH
Confidence 122344568899999 346666678999999999985 4 588999999999976 7776666655443343 34
Q ss_pred HHHHHHHHcC
Q psy10894 312 ELLSIVQRNF 321 (364)
Q Consensus 312 ~i~~~v~~~F 321 (364)
++++++.+..
T Consensus 380 ~v~~I~~~~L 389 (407)
T 4hpv_A 380 EISGIVDEML 389 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 7
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=38.44 E-value=26 Score=25.91 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=31.3
Q ss_pred cHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecccCh
Q psy10894 46 DYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSP 83 (364)
Q Consensus 46 d~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~QS~ 83 (364)
.+..|.-++..+.||++-..-+|.+|..|.-.+..-|-
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 45667888999999999988899999998877766553
No 8
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=33.02 E-value=24 Score=26.35 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=15.1
Q ss_pred cccCCCCCccchhHhHHHHHHHHHH
Q psy10894 249 AFSGKDFTKVDRSAAYAARWVAKSL 273 (364)
Q Consensus 249 AfSGKDptKVDRSaAY~AR~iAKni 273 (364)
|.-|.|-| |.|=+|||+|+|+
T Consensus 17 avrgedrs----svaglarwlarnv 37 (66)
T 3kxy_T 17 AVRGEDRS----SVAGLARWLARNV 37 (66)
T ss_dssp CCCCCCCS----CHHHHHHHHHHHT
T ss_pred HHhccchh----hHHHHHHHHHHhc
Confidence 44555554 4578899999997
No 9
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=31.99 E-value=31 Score=34.17 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCC
Q psy10894 116 ECMPLTVVLAHKLNQKVADLRRSGE 140 (364)
Q Consensus 116 ~~MPl~i~lAh~L~~~l~~~Rk~~~ 140 (364)
.=+|.|+.+||+|+.++..+..-+.
T Consensus 385 v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 385 RNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCcchHhHHHHHHHHhhhhhcCC
Confidence 4589999999999999999987444
No 10
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=28.11 E-value=41 Score=27.17 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=21.4
Q ss_pred CCCCCcHHHHHHHHHHcCCCCHHHHHHH
Q psy10894 304 GTSSRSHKELLSIVQRNFDLRPGKIVKD 331 (364)
Q Consensus 304 gT~~~~~~~i~~~v~~~Fdl~p~~Ii~~ 331 (364)
|...++-+.|.+.|.+.|+++|..|...
T Consensus 1 ~~~~it~~~I~~~Va~~f~v~~~dl~s~ 28 (101)
T 3pvv_A 1 GPHMISAATIMAATAEYFDTTVEELRGP 28 (101)
T ss_dssp ----CCHHHHHHHHHHHTTCCHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHhCC
Confidence 3446788999999999999999998643
No 11
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=25.50 E-value=28 Score=28.05 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=28.8
Q ss_pred cHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecccCh
Q psy10894 46 DYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSP 83 (364)
Q Consensus 46 d~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~QS~ 83 (364)
.+..|.-++..+.||++-..-||.+|..|.-.+..-|-
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCcc
Confidence 46667888999999999999999999998877765553
No 12
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=23.98 E-value=68 Score=28.94 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=55.0
Q ss_pred eeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhh-cCC---CCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCCC
Q psy10894 166 RRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAV-IPA---DYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGG 241 (364)
Q Consensus 166 ~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 241 (364)
++|.+||-|+.-...+++++|...+..---+|- +|. .+-++.+..+|-.||++++=|-
T Consensus 13 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGa------------------ 74 (198)
T 1mp9_A 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGA------------------ 74 (198)
T ss_dssp EEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECC------------------
T ss_pred eEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEecc------------------
Confidence 689999999999999999999866543222221 121 1134678999999999995331
Q ss_pred ccccccccccCCCCCccchhHhHHHHHHHHHHHHhcc
Q psy10894 242 WGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGL 278 (364)
Q Consensus 242 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 278 (364)
|--..+..++|.+++.|-..|.
T Consensus 75 ---------------kS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 75 ---------------KSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp ---------------SSHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHcCC
Confidence 1123566678888888878886
No 13
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=22.19 E-value=64 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=24.1
Q ss_pred ceeEEecCCCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEE
Q psy10894 232 RKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQV 286 (364)
Q Consensus 232 RKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevql 286 (364)
+-++|.++||...| ..| .+||.|++ +|+||+
T Consensus 43 ~~~vvas~~G~~~~--------------------p~W-~~Nl~A~P---~v~v~~ 73 (122)
T 3r5l_A 43 RVIVAASKGGAEKN--------------------PMW-YLNLKANP---KVQVQI 73 (122)
T ss_dssp EEEEECSCCGGGCS--------------------CHH-HHHHHHCC---EEEEEE
T ss_pred EEEEEEecCCCCCC--------------------CHH-HHhhccCC---cEEEEE
Confidence 55677888887777 578 78999985 688875
No 14
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=20.95 E-value=1.4e+02 Score=30.76 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhcCCCCC-CCCcEEEEcCCC-----------Ce--------Eecc----CCCCcccCCcee
Q psy10894 179 EKIGLKELRAEVMSKVIKAVIPADYL-DENTIVHINPCG-----------NF--------ILGG----PQVDAGLTGRKI 234 (364)
Q Consensus 179 ~~v~~~~l~~~i~e~Vi~~v~~~~~~-~~~t~~~INPtG-----------~F--------viGG----P~~DtGLTGRKi 234 (364)
+++++++++..=.....|-.+-.-.+ --+--+.+||.+ +| .||- |..|-|.++|-+
T Consensus 97 p~v~l~ev~~La~~MT~KnAl~~LP~GGgKGgi~~DPk~~s~~El~r~~r~f~~eL~~~~~IGp~~dipApDvGt~~~eM 176 (501)
T 3mw9_A 97 TDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREM 176 (501)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECSCGGGSCHHHHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEecCCccCCHHHHHHHHHHHHHHHhhccCCCCCeeEecCCCCCCHHHH
Confidence 68899999988888888777532111 012334455543 22 1221 889999999965
Q ss_pred --EEecC----CCccccccccccCCCCC---ccchh--HhHHHHHHHHHHH
Q psy10894 235 --IVDTY----GGWGAHGGGAFSGKDFT---KVDRS--AAYAARWVAKSLV 274 (364)
Q Consensus 235 --iVDTY----GG~~~HGGGAfSGKDpt---KVDRS--aAY~AR~iAKniV 274 (364)
|.|+| |-...+.-|.+.||..+ --+|+ -+|-..+.++.++
T Consensus 177 ~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eATg~GV~~~~~~~l 227 (501)
T 3mw9_A 177 SWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 227 (501)
T ss_dssp HHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCchHHHHHHHHHHHH
Confidence 89998 32222234667888763 24563 3455555555443
Done!