RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10894
(364 letters)
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional.
Length = 398
Score = 632 bits (1631), Expect = 0.0
Identities = 240/369 (65%), Positives = 296/369 (80%), Gaps = 5/369 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDA+LDA L QDP +KVACET KTGMV++ GEIT+KAVVDYQKV R+T+K IGY
Sbjct: 26 LCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGY 85
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
DD+ KG DYKTC+V++ +++QSPDIA GVH+ + +D+GAGDQG+MFGYATDETEE MPL
Sbjct: 86 DDTEKGLDYKTCNVLVAIEQQSPDIAQGVHVGKKEEDIGAGDQGIMFGYATDETEELMPL 145
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEY-CFARGACVPRRVHTVVVSVQHSE 179
T LA KL +++++LR++G W RPD KTQVT EY RG P+RVHT+++S QH E
Sbjct: 146 THELATKLAKRLSELRKNGILPWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDE 205
Query: 180 KIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY 239
+ +E+R ++M VIK VIPA LDE T H+NP G F++GGP DAGLTGRKIIVDTY
Sbjct: 206 GVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRFVIGGPHGDAGLTGRKIIVDTY 265
Query: 240 GGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISIT 299
GGWGAHGGGAFSGKD +KVDRSAAYAARW+AKSLV AGLC+RCLVQVSYAIGVAEP+SI
Sbjct: 266 GGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIH 325
Query: 300 LFDYGTSSR--SHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGR--DIFPW 355
+ YGT + ++LL IVQ+NFDLRPG I+K+L+LR PI+Q+T++YGHFGR F W
Sbjct: 326 VNTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKELDLRRPIFQKTASYGHFGRSDPEFTW 385
Query: 356 EVPKPLVID 364
EVPK L +
Sbjct: 386 EVPKDLEHE 394
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.
Length = 384
Score = 602 bits (1556), Expect = 0.0
Identities = 207/358 (57%), Positives = 268/358 (74%), Gaps = 7/358 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+ DQISDAILDA L QDP+A+VACET+ TG+V++ GEIT+ A VD +++ RETIK IGY
Sbjct: 18 IADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGY 77
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
S GFD TC+V++ + EQSPDIA GV + D++GAGDQG+MFGYA +ET E MPL
Sbjct: 78 TSSEYGFDANTCAVLVSIGEQSPDIAQGVD-RDELDEIGAGDQGIMFGYACNETPELMPL 136
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEK 180
+ LAH+L +++A++R+SG + RPD K+QVT EY P R+ T+VVS QH
Sbjct: 137 PITLAHRLVRRLAEVRKSGTLPYLRPDAKSQVTVEY----ENGKPVRIDTIVVSTQHDPD 192
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240
+ ++LR +V+ +VIK V+PA+ LDE+T INP G F++GGPQ DAGLTGRKIIVDTYG
Sbjct: 193 VSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGGPQGDAGLTGRKIIVDTYG 252
Query: 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
G+ HGGGAFSGKD TKVDRSAAYAAR+VAK++V AGL RC VQ+SYAIGVAEP+SI +
Sbjct: 253 GYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYV 312
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRD--IFPWE 356
+GT S +++ V+ FDLRP I+K L+LR PIY++T+ YGHFGR+ FPWE
Sbjct: 313 DTFGTGKVSDEKIEEAVREVFDLRPAGIIKMLDLRRPIYRKTAAYGHFGREDLDFPWE 370
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase. Tandem isozymes
of this S-adenosylmethionine synthetase in E. coli are
designated MetK and MetX [Central intermediary
metabolism, Other].
Length = 377
Score = 593 bits (1532), Expect = 0.0
Identities = 217/362 (59%), Positives = 272/362 (75%), Gaps = 5/362 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+ DQISDA+LDA L+QDP AKVACET KTG+VL+ GEIT+ A VD Q+V R TIK IGY
Sbjct: 15 IADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGY 74
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
DS GFD KTC+V++ + QSPDIA GV ++ GAGDQG+MFGYAT+ET E MPL
Sbjct: 75 TDSDYGFDAKTCAVLVAIGNQSPDIAQGVDKANP-EEQGAGDQGIMFGYATNETPELMPL 133
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEK 180
+ LAHKL ++ A+LR+SG W RPD K+QVT +Y + P RV T+V+S QH
Sbjct: 134 PITLAHKLLKRAAELRKSGTLPWLRPDGKSQVTVQYEDNK----PVRVDTIVLSTQHDPD 189
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240
I K+LR ++ ++IK V+PA+YLDE T INP G F++GGP D GLTGRKIIVDTYG
Sbjct: 190 ISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPMGDTGLTGRKIIVDTYG 249
Query: 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
GW HGGGAFSGKD +KVDRSAAYAAR++AK++V AGL RC VQ+SYAIGVAEP+SI +
Sbjct: 250 GWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMI 309
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
+GTS +S +ELL++V+ NFDLRPG I++ L+L PIY++T+ YGHFGR+ FPWE P
Sbjct: 310 ETFGTSKKSEEELLNVVKENFDLRPGGIIEKLDLLKPIYRKTAVYGHFGREEFPWEKPDK 369
Query: 361 LV 362
L
Sbjct: 370 LE 371
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme
metabolism].
Length = 388
Score = 584 bits (1508), Expect = 0.0
Identities = 206/358 (57%), Positives = 270/358 (75%), Gaps = 5/358 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDAILDA L+QDP+++VACET+ TG+V++ GEIT+ A VD + R+TIK IGY
Sbjct: 20 ICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGY 79
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDR-DDVGAGDQGLMFGYATDETEECMP 119
+S GFD KTC+V++ + EQSPDIA GV + D++GAGDQG+MFGYA +ET E MP
Sbjct: 80 TESDYGFDAKTCAVLVAIGEQSPDIAQGVDEADEELDEIGAGDQGIMFGYACNETPELMP 139
Query: 120 LTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSE 179
L + LAH+L +++A++R++GE W RPD K+QVT EY P R+ T+VVS QH
Sbjct: 140 LPISLAHRLLRRLAEVRKNGELPWLRPDAKSQVTVEY---EDNGKPVRIDTIVVSTQHDP 196
Query: 180 KIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY 239
I ++LR +V+ ++IK V+P + LD+ T INP G F++GGPQ DAGLTGRKIIVDTY
Sbjct: 197 DISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTY 256
Query: 240 GGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISIT 299
GG+ HGGGAFSGKD TKVDRSAAYAAR+VAK++V AGL RC VQ+SYAIGVAEP+SI+
Sbjct: 257 GGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIS 316
Query: 300 LFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGR-DIFPWE 356
+ +GT S +++ V++ FDLRP I+K L+L PIY++T+ YGHFGR D FPWE
Sbjct: 317 VDTFGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRPIYRKTAAYGHFGREDDFPWE 374
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase.
Length = 386
Score = 537 bits (1386), Expect = 0.0
Identities = 219/368 (59%), Positives = 269/368 (73%), Gaps = 7/368 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA VDY+K+ R+T + IG+
Sbjct: 19 LCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGF 78
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVH--INRDRDDVGAGDQGLMFGYATDETEECM 118
G D C V++ +++QSPDIA GVH + + +++GAGDQG MFGYATDET E M
Sbjct: 79 VSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELM 138
Query: 119 PLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHS 178
PLT VLA KL ++ ++R++G W RPD KTQVT EY GA VP RVHTV++S QH
Sbjct: 139 PLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHD 198
Query: 179 EKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDT 238
E + E+ A++ VIK VIP YLDE TI H+NP G F++GGP DAGLTGRKII+DT
Sbjct: 199 ETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDT 258
Query: 239 YGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISI 298
YGGWGAHGGGAFSGKD TKVDRS AY R AKS+V AGL RRC+VQVSYAIGV EP+S+
Sbjct: 259 YGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSV 318
Query: 299 TLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLR---NPIYQQTSTYGHFGRD--IF 353
+ YGT KE+L IV+ NFD RPG I +L+L+ N +Q+T+ YGHFGRD F
Sbjct: 319 FVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNGRFQKTAAYGHFGRDDPDF 378
Query: 354 PWEVPKPL 361
WEV KPL
Sbjct: 379 TWEVVKPL 386
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional.
Length = 386
Score = 491 bits (1267), Expect = e-175
Identities = 204/360 (56%), Positives = 258/360 (71%), Gaps = 10/360 (2%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDAILDA LRQDP ++VACE + TG+V++ GEITS A VD +K+ R IK IGY
Sbjct: 19 LCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGY 78
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDD----VGAGDQGLMFGYATDETEE 116
D GFD +TC+V++ L EQSPDIA GV RD+ +GAGDQG MFGYA DET E
Sbjct: 79 D--ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPE 136
Query: 117 CMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQ 176
MPL +VLAH+L +++ R+ G PD KTQVT EY P RV T+VVS Q
Sbjct: 137 LMPLPIVLAHRLAKRLDQARKDGLLPGLLPDGKTQVTVEY----EDGRPVRVDTIVVSAQ 192
Query: 177 HSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIV 236
H E + L+ LR +V+ VIK V +LD+ T + INP G F++GGP D GLTGRKI+V
Sbjct: 193 HDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRFVVGGPAADTGLTGRKIMV 252
Query: 237 DTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPI 296
DTYGG+ HGGGAFSGKD +KVDRSAAYAAR++AK++V AGL +RC VQ+SYAIG A P+
Sbjct: 253 DTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPV 312
Query: 297 SITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWE 356
S+ + +GT + S +EL V+ +FDLRP I++ LNLRNPIY++T+ YGHFGR +FPWE
Sbjct: 313 SVQVNTFGTGTVSDEELTRAVREHFDLRPAGIIEKLNLRNPIYRKTAAYGHFGRTLFPWE 372
>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase,
C-terminal domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 138
Score = 276 bits (709), Expect = 3e-94
Identities = 112/137 (81%), Positives = 122/137 (89%)
Query: 220 LGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLC 279
+GGPQ DAGLTGRKIIVDTYGGWGAHGGGAFSGKD TKVDRSAAYAARWVAKSLV AGL
Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLA 60
Query: 280 RRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIY 339
RRCLVQVSYAIGVAEP+SI + YGTS +S +ELL IV++NFDLRPG IVK L+L+ PIY
Sbjct: 61 RRCLVQVSYAIGVAEPLSIMVDTYGTSKKSEEELLEIVRKNFDLRPGVIVKMLDLKKPIY 120
Query: 340 QQTSTYGHFGRDIFPWE 356
QQT+ YGHFGRD FPWE
Sbjct: 121 QQTAAYGHFGRDDFPWE 137
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase,
central domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 119
Score = 212 bits (542), Expect = 4e-69
Identities = 64/123 (52%), Positives = 88/123 (71%), Gaps = 4/123 (3%)
Query: 96 DDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCE 155
D++GAGDQG+MFGYAT+ET E MPL +VLAH+L +++A+LR++G + RPD K+QVT E
Sbjct: 1 DEIGAGDQGIMFGYATNETPELMPLPIVLAHRLLRRLAELRKNGTLPYLRPDGKSQVTVE 60
Query: 156 YCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPC 215
Y P RV TVVVS QH + L+ELR +++ +VIK V+P + LD++T INP
Sbjct: 61 Y----EDGKPVRVDTVVVSTQHDPDVSLEELREDIIEEVIKPVLPEELLDDDTKYLINPT 116
Query: 216 GNF 218
G F
Sbjct: 117 GRF 119
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase,
N-terminal domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 100
Score = 156 bits (396), Expect = 1e-47
Identities = 50/83 (60%), Positives = 65/83 (78%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDAILDA L QDP+++VACET+ TG+V++ GEIT+ A VD +K+ RE IK IGY
Sbjct: 18 ICDQISDAILDAFLAQDPNSRVACETLVTTGLVVVAGEITTSAYVDIEKIVREVIKDIGY 77
Query: 61 DDSSKGFDYKTCSVMLCLDEQSP 83
D S GFD TC+V++ + EQSP
Sbjct: 78 DSSELGFDADTCAVLVSIHEQSP 100
>gnl|CDD|217552 pfam03429, MSP1b, Major surface protein 1B. The major surface
protein (MSP1) of the cattle pathogen Anaplasma is a
heterodimer comprised of MSP1a and MSP1b. This family is
the MSP1b chain. There MSP1 proteins are putative
adhesins for bovine erythrocytes.
Length = 726
Score = 30.8 bits (69), Expect = 1.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 259 DRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVA 293
D+S A + S + AGLCR LV+ SY +G A
Sbjct: 183 DKSTALVREGLETSRLGAGLCRNGLVEASYGVGYA 217
>gnl|CDD|226865 COG4458, SrfC, Uncharacterized protein conserved in bacteria,
putative virulence factor [Function unknown].
Length = 821
Score = 29.9 bits (67), Expect = 2.3
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 256 TKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLS 315
++D A + + +S A R L++ P+ + F + +SH L+S
Sbjct: 31 VRLDDEADSLEQHLRRSRNAA----RKLMEAI-----DRPMCVGFFGPSQAGKSH--LIS 79
Query: 316 IVQRNFDLR-----PGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVI 363
+ N + G+ + + NP + T F R+ P P+V+
Sbjct: 80 ALAANESGKLEARFGGRKLDFIRHINPERESTGLVTRFSRNETPGPAGYPVVL 132
>gnl|CDD|233312 TIGR01209, TIGR01209, RNA ligase, Pab1020 family. Members of this
family are found, so far, in a single copy per genome
and largely in thermophiles, of which only Aquifex
aeolicus is bacterial rather than archaeal. PSI-BLAST
converges after a single iteration to the whole of this
family and reveals no convincing similarity to any other
protein. The member protein Pab1020 has been
characterized as an RNA ligase with circularization
activity [Transcription, RNA processing].
Length = 374
Score = 29.7 bits (67), Expect = 2.7
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 305 TSSRSHKELLSIVQR-NFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI-----FPWEVP 358
T+ + +E+ I++R N + R G ++KD +R + T++Y + DI + +E+
Sbjct: 198 TADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYANI-NDIKYAARYFFELG 256
Query: 359 KP 360
+
Sbjct: 257 RD 258
>gnl|CDD|224341 COG1423, COG1423, ATP-dependent DNA ligase, homolog of eukaryotic
ligase III [DNA replication, recombination, and repair].
Length = 382
Score = 29.2 bits (66), Expect = 3.3
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 305 TSSRSHKELLSIVQR-NFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI-----FPWEVP 358
+ + +E+ IV+R N + R G ++KD ++R P + T++Y + DI F +E+
Sbjct: 206 PADEAGEEIYEIVERLNKEGREGVVMKDPDMRVPPLKYTTSYANI-EDIKYAFRFFFELG 264
Query: 359 KP 360
+
Sbjct: 265 RD 266
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 29.1 bits (65), Expect = 4.0
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 279 CRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPI 338
R L+++S GV P+S L + S+ S K + V R FD LR+
Sbjct: 361 LLRSLIRLSRGSGVYIPLSPYLVEILKSAISVKNPKASVLRKFDFDSMLKPDTEYLRSKE 420
Query: 339 YQQ----------TSTYGHFGRDI-FPWEVPKPLVI 363
YQ + F ++I FP E+ P++
Sbjct: 421 YQMGVIEEASSLLLEYFALFSKNIAFP-ELVGPVIS 455
>gnl|CDD|182737 PRK10794, PRK10794, cell wall shape-determining protein;
Provisional.
Length = 370
Score = 28.5 bits (64), Expect = 5.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 68 DYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAG 101
DY+ VM+ LD +S + AG HI + + +G+G
Sbjct: 205 DYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSG 238
>gnl|CDD|216956 pfam02274, Amidinotransf, Amidinotransferase. This family contains
glycine (EC:2.1.4.1) and inosamine (EC:2.1.4.2)
amidinotransferases, enzymes involved in creatine and
streptomycin biosynthesis respectively. This family also
includes arginine deiminases, EC:3.5.3.6. These enzymes
catalyze the reaction: arginine + H2O <=> citrulline +
NH3. Also found in this family is the Streptococcus anti
tumour glycoprotein.
Length = 286
Score = 28.0 bits (63), Expect = 7.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 303 YGTSSRSHKELLSIVQRNFDLRP 325
YG S R+ +E + + R P
Sbjct: 135 YGVSERTDEEGIEELARTLGYEP 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,516,962
Number of extensions: 1768323
Number of successful extensions: 1389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1373
Number of HSP's successfully gapped: 25
Length of query: 364
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 266
Effective length of database: 6,590,910
Effective search space: 1753182060
Effective search space used: 1753182060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.4 bits)