RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10894
(364 letters)
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural
genomics, structural genomics consortium, SGC,
transferase; HET: SAM; 1.21A {Homo sapiens} SCOP:
d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A*
1o93_A* 1o90_A* 1o9t_A 2obv_A*
Length = 396
Score = 711 bits (1837), Expect = 0.0
Identities = 269/361 (74%), Positives = 317/361 (87%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDA+LDAHL+QDPDAKVACETV KTGM+LL GEITS+A VDYQKV RE +KHIGY
Sbjct: 34 ICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGY 93
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
DDSSKGFDYKTC+V++ L++QSPDIA GVH++R+ +D+GAGDQGLMFGYATDETEECMPL
Sbjct: 94 DDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPL 153
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEK 180
T+VLAHKLN K+A+LRR+G W RPD+KTQVT +Y RGA +P RVHT+V+SVQH E+
Sbjct: 154 TIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEE 213
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240
+ L E+R + KVIKAV+PA YLDE+TI H+ P G F++GGPQ DAGLTGRKIIVDTYG
Sbjct: 214 VCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYG 273
Query: 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
GWGAHGGGAFSGKD+TKVDRSAAYAARWVAKSLVK GLCRR LVQVSYAIGV+ P+SI++
Sbjct: 274 GWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISI 333
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
F YGTS +S +ELL IV++NFDLRPG IV+DL+L+ PIYQ+T+ YGHFGRD FPWEVPK
Sbjct: 334 FHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKK 393
Query: 361 L 361
L
Sbjct: 394 L 394
>3so4_A Methionine-adenosyltransferase; structural genomics, medical
structural genomics of pathogen protozoa, MSGPP; 3.18A
{Entamoeba histolytica}
Length = 415
Score = 699 bits (1806), Expect = 0.0
Identities = 210/363 (57%), Positives = 270/363 (74%), Gaps = 2/363 (0%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
MCDQISDAILDA L QDP + VACET TKTG++L+ GEIT+ AV+D K+ R +K IGY
Sbjct: 38 MCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGY 97
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
DD++KGFDY+TCSV+ C+++QS DIA GVH+ + +D+GAGDQG+MFGYATDE++E MPL
Sbjct: 98 DDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVEKKEEDIGAGDQGIMFGYATDESKEMMPL 157
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEK 180
T VL+ KL ++ + R G W RPD+K+QVT EY G P RVHT+V+S QH++
Sbjct: 158 THVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADN 217
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240
+ +E+ + +V + VIP + +D+ + + NP G F++GGP DAGLTGRKIIVDTYG
Sbjct: 218 VSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGPMGDAGLTGRKIIVDTYG 277
Query: 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
GWGAHGGGAFSGKD +KVDRS AY ARW+AKSLV AGLC R LVQ+SYAIGV+ P+SI +
Sbjct: 278 GWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINV 337
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI--FPWEVP 358
YGT L+ IV +NFD+RPG I+K+L L PI+Q+T+ GHFGR+ F WE P
Sbjct: 338 NTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRPIFQKTAVGGHFGRNDPDFKWEFP 397
Query: 359 KPL 361
K L
Sbjct: 398 KEL 400
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI
cobalt, magnesium, metal-binding, nucleotide-binding,
one-C metabolism; 2.35A {Burkholderia pseudomallei}
Length = 399
Score = 654 bits (1691), Expect = 0.0
Identities = 194/362 (53%), Positives = 254/362 (70%), Gaps = 7/362 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+ DQISDAILDA L QD ++VA ET+ TG+V+L GEIT+ A +DY ++ R+TIK IGY
Sbjct: 24 VADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGY 83
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGV-HINRDRDDVGAGDQGLMFGYATDETEECMP 119
D++ G DY+ C+V++ D+QSPDIA GV + + D GAGDQGLMFGYA DET E MP
Sbjct: 84 DNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMP 143
Query: 120 LTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSE 179
L + L+H+L ++ A+LRR G W RPD K+QVT Y + P + TVV+S QH+
Sbjct: 144 LPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGK----PHSIDTVVLSTQHAP 199
Query: 180 KIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY 239
+I L LR V+ +VIK +PAD + + +NP G F++GGPQ D GLTGRKIIVDTY
Sbjct: 200 EIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTY 259
Query: 240 GGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISIT 299
GG HGGGAFSGKD +KVDRSAAYA R+VAK++V AGL R L+QVSYAIGVAEP S+
Sbjct: 260 GGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVM 319
Query: 300 LFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI--FPWEV 357
+ +GT S + + +V+ +FDLRP I++ L+L PIY++T+ YGHFGR+ F WE
Sbjct: 320 VNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGREEPEFSWEA 379
Query: 358 PK 359
Sbjct: 380 AD 381
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM
ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1
d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A*
1rg9_A* 1xra_A 1xrb_A 1xrc_A
Length = 383
Score = 647 bits (1673), Expect = 0.0
Identities = 194/356 (54%), Positives = 254/356 (71%), Gaps = 5/356 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+ DQISDA+LDA L QDP A+VACET KTGMVL+ GEIT+ A VD +++TR T++ IGY
Sbjct: 18 IADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGY 77
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
S GFD +C+V+ + +QSPDI GV D + GAGDQGLMFGYAT+ET+ MP
Sbjct: 78 VHSDMGFDANSCAVLSAIGKQSPDINQGVD-RADPLEQGAGDQGLMFGYATNETDVLMPA 136
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEK 180
+ AH+L Q+ A++R++G W RPD K+QVT +Y + + VV+S QHSE+
Sbjct: 137 PITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGK----IVGIDAVVLSTQHSEE 192
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240
I K L+ VM ++IK ++PA++L T INP G F++GGP D GLTGRKIIVDTYG
Sbjct: 193 IDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYG 252
Query: 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
G HGGGAFSGKD +KVDRSAAYAAR+VAK++V AGL RC +QVSYAIGVAEP SI +
Sbjct: 253 GMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMV 312
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWE 356
+GT ++L +V+ FDLRP +++ L+L +PIY++T+ YGHFGR+ FPWE
Sbjct: 313 ETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWE 368
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center
for infectious disease, S adenosylmethionine synthetase,
transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A
3rv2_A
Length = 407
Score = 629 bits (1626), Expect = 0.0
Identities = 183/375 (48%), Positives = 240/375 (64%), Gaps = 23/375 (6%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAV---VDYQKVTRETIKH 57
+CD ISD++LDA L QDP ++VA ET+ TG V + GE+T+ A D RE I
Sbjct: 25 ICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILD 84
Query: 58 IGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVH---------INRDRDDVGAGDQGLMFG 108
IGYD S KGFD +C V + + QSPDIA GV D GAGDQGLMFG
Sbjct: 85 IGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFG 144
Query: 109 YATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRV 168
YA ++T E MPL + LAH+L++++ ++R++G + RPD KTQVT E+ P R+
Sbjct: 145 YAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIEFEDDV----PVRL 200
Query: 169 HTVVVSVQHSEKIGL-----KELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGP 223
TVV+S QH+ I L ++R +V++ V+ + +T + +NP G F++GGP
Sbjct: 201 DTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSSTRLLVNPTGKFVVGGP 260
Query: 224 QVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCL 283
DAGLTGRKIIVDTYGGW HGGGAFSGKD +KVDRSAAYA RWVAK++V AGL R
Sbjct: 261 MGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVE 320
Query: 284 VQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTS 343
VQV+YAIG A P+ + + +GT++ ++ IV FDLRPG I++DL+L PIY QT+
Sbjct: 321 VQVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRPIYAQTA 380
Query: 344 TYGHFGRDI--FPWE 356
YGHFGR PWE
Sbjct: 381 AYGHFGRTDVELPWE 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 87/250 (34%)
Query: 141 FWW-ARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEKI-----GLKELRAEVMSKV 194
F+ R C + + P + S++++E + + L E +
Sbjct: 304 FFIGVR--------CYEAYPNTSLPPSILED---SLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 195 IKAVIPADYLDENTIVHI---NPCGNFILGGPQVDAGLTG-----RKIIVDTYGGWGAHG 246
+ +L V I N N ++ GP L G RK
Sbjct: 353 VNKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQS--LYGLNLTLRKA------------ 396
Query: 247 GGAFSGKDFTKV---DRSAAYAARWV-------------AKSLVKAGLCRRCLVQVSYAI 290
A SG D +++ +R ++ R++ A L+ L + VS+
Sbjct: 397 -KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN---NVSFN- 451
Query: 291 GVAEPISITLFDYGTSS--RSHKELLSIVQRNFDLRPGKIVKDLNLRNPIY-----QQTS 343
A+ I I ++D S R SI +R IV D +R P+ Q +
Sbjct: 452 --AKDIQIPVYDTFDGSDLRVLSG--SISER--------IV-DCIIRLPVKWETTTQFKA 498
Query: 344 TYGH---FGR 350
T H FG
Sbjct: 499 T--HILDFGP 506
Score = 32.7 bits (74), Expect = 0.25
Identities = 29/189 (15%), Positives = 51/189 (26%), Gaps = 66/189 (34%)
Query: 80 EQSPDIAAGVHIN----RDR---------DDVGAGDQ-----GLM--F-GYATDETE--E 116
E + +++ + A D+ L+ F GY + E +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 117 CMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQ 176
VL L EF E C+ G +H + +
Sbjct: 77 VGQFDQVLNLCLT----------EF-------------ENCYLEG----NDIHALAAKLL 109
Query: 177 HSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVH--INPCGNFILGGPQVDAGLTGRKI 234
L + + ++IK Y+ + + N L A G
Sbjct: 110 QENDTTLVKTK-----ELIKN-----YITARIMAKRPFDKKSNSAL----FRAVGEGNAQ 155
Query: 235 IVDTYGGWG 243
+V +GG G
Sbjct: 156 LVAIFGGQG 164
Score = 31.6 bits (71), Expect = 0.51
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 29/116 (25%)
Query: 3 DQISDAILDAHLRQDP-DAKVACETV--TKTGMVL--LCGEITSKAV-------VDYQKV 50
D I+ ++ ++ + D ++ V T G L L G I+ + V V ++
Sbjct: 437 DLINKDLVKNNVSFNAKDIQI---PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 51 TRETIKHIGYDDSSKGFDYKTCSVMLCLDEQSPD------IAAG-VHINRDRDDVG 99
T+ HI D F S + L ++ D I AG + IN D DD G
Sbjct: 494 TQFKATHI-LD-----FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD-DDYG 542
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 45/324 (13%), Positives = 82/324 (25%), Gaps = 127/324 (39%)
Query: 68 DYKTCSVMLCLDE-QSPDIAAGVHIN-------RDR---DDVGAGDQG------LMFGYA 110
Y+ C +L L Q+ +++ R + D + A
Sbjct: 242 PYENC--LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 111 TDETEECMPLTVVLAHKLNQKVADLRRS------------GEF---WWARPDTKTQVTCE 155
DE + +L L+ + DL R E A D V C+
Sbjct: 300 PDEVKS------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 156 YCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIK--AVIPADYLDENTIVHIN 213
++ T++ + L L K+ +V P HI
Sbjct: 354 -----------KLTTII-------ESSLNVLEPAEYRKMFDRLSVFPPS-------AHI- 387
Query: 214 PCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSL 273
P + L +I W + V V L
Sbjct: 388 P--------TIL---L---SLI------WFD--------VIKSDVMV--------VVNKL 411
Query: 274 VKAGLCRRCLVQVSYAI-GVAEPISITLFDYGTSSRS----HKELLS--IVQRNFDLRPG 326
K L + + + +I + + + H+ ++ + + FD
Sbjct: 412 HKYSLVEKQPKESTISIPSI-------YLELKVKLENEYALHRSIVDHYNIPKTFD--SD 462
Query: 327 KIVKDLNLRNPIYQQTSTYGHFGR 350
++ L Y H G
Sbjct: 463 DLIPP-YLDQYFYS------HIGH 479
Score = 37.5 bits (86), Expect = 0.006
Identities = 54/361 (14%), Positives = 105/361 (29%), Gaps = 120/361 (33%)
Query: 9 ILDAHLRQDPDAKVA------CETVTKTGMVLLCGEITS--KAVVDYQKVTRETIKHIGY 60
+L +++ +AK C+ + +T+ K V D+ ++ T HI
Sbjct: 249 VLL-NVQ---NAKAWNAFNLSCKIL-----------LTTRFKQVTDF--LSAATTTHISL 291
Query: 61 DDSSKGF-DYKTCSVML-CLDEQSPD---------------IAAGVHINRDRDDVGAGDQ 103
D S + S++L LD + D IA + D
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD------ 345
Query: 104 GLMFGYATDETEECMPLTVVLAHKLNQ-KVADLRRSGE------------------FWWA 144
+ + C LT ++ LN + A+ R+ + W+
Sbjct: 346 ----NW---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 145 RPDTKTQ-VTCEYCFARGACVPRRVHTVVVSVQHSEKIGLK---ELRAEVMSKVIKAVIP 200
+ V + + + V ++ +S+ S + LK E + ++
Sbjct: 399 VIKSDVMVVVNK--LHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 201 ADYLDENTIV--------------HINPCGN------FILGGPQV--DAGLTGRKIIVDT 238
D + ++ H+ + F V D +KI D+
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF----RMVFLDFRFLEQKIRHDS 511
Query: 239 YGGWGAHGGGAFSGKDFTK-----VDRSAAYAARWVA--KSLVKAG--LCR---RCLVQV 286
W A G + + D Y A L K L L+++
Sbjct: 512 T-AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 287 S 287
+
Sbjct: 571 A 571
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 30.2 bits (69), Expect = 1.0
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 21/72 (29%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
G D A Y + +A+ + AGL R LV + E +S
Sbjct: 122 GLRHIPVL--------DIRAQASGLLYGLQ-MARGQILAGLARHVLV-----VC-GEVLS 166
Query: 298 ITLFDYGTSSRS 309
D R+
Sbjct: 167 -KRMDCSDRGRN 177
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 29.4 bits (67), Expect = 2.1
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 20/60 (33%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
GA G F D SAA +A +A V++G R LV + E ++
Sbjct: 108 GADNAGGF--------DLSAACAGFCHALS-IAADAVESGGSRHVLV-----VA-TERMT 152
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 29.0 bits (66), Expect = 2.3
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 20/60 (33%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
GA G F D SA YA A +++ G LV +G E +S
Sbjct: 109 GAKGILGF--------DLSAGAAGFGYALG-AAADMIRGGGAATMLV-----VG-TEKLS 153
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 27.9 bits (63), Expect = 5.8
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 20/60 (33%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
G G AF D SAA Y SL+ AGL L+ +G + S
Sbjct: 99 GLVGALAF--------DLSAAATGFVYGLA-SVGSLISAGLADSALL-----VG-VDTFS 143
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 27.8 bits (63), Expect = 6.0
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 20/60 (33%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
+F D +AA YA VA ++AG ++ LV IG ++ S
Sbjct: 106 NIDDAISF--------DLAAACTGFVYALS-VADQFIRAGKVKKALV-----IG-SDLNS 150
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 27.8 bits (63), Expect = 6.2
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 20/60 (33%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
G G AF D +AA YA VA VK+G + LV +G ++ ++
Sbjct: 99 GIKGCPAF--------DVAAACAGFTYALS-VADQYVKSGAVKYALV-----VG-SDVLA 143
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 27.5 bits (62), Expect = 6.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 20/60 (33%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
GA AF D SAA YA +A+ LV +G + LV IG E S
Sbjct: 100 GATEAFAF--------DISAACSGFVYALS-MAEKLVLSGRYQTGLV-----IG-GETFS 144
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic
helix-loop-helix motif, BHLH motif, lambd repressor-like
DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus
aurantiacus}
Length = 292
Score = 27.6 bits (62), Expect = 6.8
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 128 LNQKVADLRRSGEF--WWARPD 147
+ + +L + EF +W R
Sbjct: 194 FVELLDNLMQYREFKRFWERAH 215
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 27.4 bits (62), Expect = 7.0
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 20/60 (33%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
G + D+ AA Y+ AK V++G LV +G A+ +S
Sbjct: 99 GTGKVASM--------DQLAACSGFMYSMI-TAKQYVQSGDYHNILV-----VG-ADKLS 143
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 27.4 bits (62), Expect = 7.5
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 20/60 (33%)
Query: 243 GAHGGGAFSGKDFTKVDRSAA-----YAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPIS 297
A G AF D SAA YA +A S +K+G + LV IG AE +S
Sbjct: 98 KAKGVYAF--------DISAACSGFIYALD-IADSFIKSGKAKNVLV-----IG-AEKLS 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,733,666
Number of extensions: 350260
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 22
Length of query: 364
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 269
Effective length of database: 4,049,298
Effective search space: 1089261162
Effective search space used: 1089261162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)