RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10894
(364 letters)
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 218 bits (556), Expect = 1e-71
Identities = 114/142 (80%), Positives = 129/142 (90%)
Query: 220 LGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLC 279
+GGPQ DAGLTGRKIIVDTYGGWGAHGGGAFSGKD+TKVDRSAAYAARWVAKSLVK GLC
Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60
Query: 280 RRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIY 339
RR LVQVSYAIGV+ P+SI++F YGTS +S +ELL IV++NFDLRPG IV+DL+L+ PIY
Sbjct: 61 RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIY 120
Query: 340 QQTSTYGHFGRDIFPWEVPKPL 361
Q+T+ YGHFGRD FPWEVPK L
Sbjct: 121 QRTAAYGHFGRDSFPWEVPKKL 142
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 210 bits (536), Expect = 1e-68
Identities = 86/137 (62%), Positives = 107/137 (78%)
Query: 220 LGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLC 279
+GGP D GLTGRKIIVDTYGG HGGGAFSGKD +KVDRSAAYAAR+VAK++V AGL
Sbjct: 1 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLA 60
Query: 280 RRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIY 339
RC +QVSYAIGVAEP SI + +GT ++L +V+ FDLRP +++ L+L +PIY
Sbjct: 61 DRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIY 120
Query: 340 QQTSTYGHFGRDIFPWE 356
++T+ YGHFGR+ FPWE
Sbjct: 121 KETAAYGHFGREHFPWE 137
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 126
Score = 174 bits (443), Expect = 5e-55
Identities = 82/126 (65%), Positives = 102/126 (80%)
Query: 94 DRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVT 153
+ +D+GAGDQGLMFGYATDETEECMPLT+VLAHKLN K+A+LRR+G W RPD+KTQVT
Sbjct: 1 NEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVT 60
Query: 154 CEYCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHIN 213
+Y RGA +P RVHT+V+SVQH E++ L E+R + KVIKAV+PA YLDE+TI H+
Sbjct: 61 VQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQ 120
Query: 214 PCGNFI 219
P G F+
Sbjct: 121 PSGRFV 126
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 160 bits (407), Expect = 1e-49
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 94 DRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVT 153
D + GAGDQGLMFGYAT+ET+ MP + AH+L Q+ A++R++G W RPD K+QVT
Sbjct: 3 DPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVT 62
Query: 154 CEYCFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHIN 213
+Y + VV+S QHSE+I K L+ VM ++IK ++PA++L T IN
Sbjct: 63 FQYDD----GKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFIN 118
Query: 214 PCGNFI 219
P G F+
Sbjct: 119 PTGRFV 124
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
(Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 124 bits (313), Expect = 5e-36
Identities = 73/93 (78%), Positives = 86/93 (92%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDA+LDAHL+QDPDAKVACETV KTGM+LL GEITS+A VDYQKV RE +KHIGY
Sbjct: 18 ICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGY 77
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINR 93
DDSSKGFDYKTC+V++ L++QSPDIA GVH++R
Sbjct: 78 DDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDR 110
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 113 bits (285), Expect = 6e-32
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+ DQISDA+LDA L QDP A+VACET KTGMVL+ GEIT+ A VD +++TR T++ IGY
Sbjct: 18 IADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGY 77
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDI 85
S GFD +C+V+ + +QSPDI
Sbjct: 78 VHSDMGFDANSCAVLSAIGKQSPDI 102
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
292]}
Length = 98
Score = 26.8 bits (59), Expect = 1.6
Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 18/92 (19%)
Query: 107 FGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDT-------KTQVTCEYCFA 159
FG E P TV L+ RSG + + V
Sbjct: 2 FGATNTNARENTPFTVRLS-----------RSGTSFEIPANRSILEVLRDANVRVPSSCE 50
Query: 160 RGACVPRRVHTVVVSVQHSEKIGLKELRAEVM 191
G C + H + + + + +
Sbjct: 51 SGTCGSCKTALCSGEADHRDMVLRDDEKGTQI 82
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia)
[TaxId: 35158]}
Length = 121
Score = 25.9 bits (57), Expect = 4.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 238 TYGGWGAHGGGAFSG 252
T+ +G GG FSG
Sbjct: 3 THRKFGGSGGSPFSG 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,387,231
Number of extensions: 64133
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 13
Length of query: 364
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,226,816
Effective search space: 341054848
Effective search space used: 341054848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)