Query psy10895
Match_columns 661
No_of_seqs 162 out of 261
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:11:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06762 LMF1: Lipase maturati 100.0 9E-129 2E-133 1045.4 31.3 377 118-573 1-384 (384)
2 smart00752 HTTM Horizontally T 99.4 4.6E-11 1E-15 124.7 19.6 233 23-279 31-270 (271)
3 PF05090 VKG_Carbox: Vitamin K 98.9 2.3E-08 5.1E-13 111.5 16.0 181 92-280 67-252 (446)
4 COG2259 Predicted membrane pro 72.5 13 0.00029 35.5 7.2 88 153-260 11-98 (142)
5 PF07681 DoxX: DoxX; InterPro 53.2 25 0.00054 30.0 4.6 77 160-256 4-80 (85)
6 PF08043 Xin: Xin repeat; Int 46.4 6 0.00013 24.7 -0.2 13 187-199 3-15 (16)
7 PF07291 MauE: Methylamine uti 40.1 20 0.00044 35.9 2.4 78 153-249 5-82 (184)
8 PF08636 Pkr1: ER protein Pkr1 28.9 1.3E+02 0.0027 26.4 5.0 36 240-275 25-60 (75)
9 PF12077 DUF3556: Transmembran 27.0 1.1E+02 0.0023 35.8 5.5 89 159-258 227-330 (574)
10 PF08760 DUF1793: Domain of un 26.0 40 0.00087 33.7 1.8 38 485-530 103-140 (171)
No 1
>PF06762 LMF1: Lipase maturation factor; InterPro: IPR009613 This family, which includes bacterial and eukaryotic members, represents a conserved region located towards the C-terminal end of a number of hypothetical proteins of unknown function. These are possibly integral membrane proteins.
Probab=100.00 E-value=9.5e-129 Score=1045.44 Aligned_cols=377 Identities=49% Similarity=0.958 Sum_probs=313.4
Q ss_pred cchhhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCccccccCCCcccccccchhhhhcc
Q psy10895 118 MSFQWDTLLLETGFLCIIVSPFGINKDSSRKGSSPSDQVKFWLVRWLLFRLIVTSPINKLSSGDPSWWTLKALGIHFQSM 197 (661)
Q Consensus 118 ~~FqWD~LLLE~GFLaiflaP~~~~~~~~~~~~~p~~~l~~wl~RwLlFRlmf~SGvvKl~s~cp~W~~LTAL~yHyETQ 197 (661)
|+||||+||||+||||||+||++. ++..+..|+|.+++|++|||+||+|||||+||+ |+||+|||||||+||||||
T Consensus 1 ~~fqWD~lLLE~GFL~iflaP~~~---~~~~~~~~~~~~~~wl~rwLlFRlmf~SGlvKl-s~dp~W~~LTAL~yHyETQ 76 (384)
T PF06762_consen 1 YSFQWDSLLLETGFLAIFLAPFCF---SRLPGRTPPPSLILWLLRWLLFRLMFGSGLVKL-SGDPTWWDLTALDYHYETQ 76 (384)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhc---cCCCCCCCCcHHHHHHHHHHHHHHHhcccceEe-cCCCccccccchhhHhhhC
Confidence 689999999999999999999972 356778899999999999999999999999999 9999999999999999999
Q ss_pred CCCCchhhhhccCchhHHHHHHHHHHHHHhhccceeecccchhhHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHhhcc
Q psy10895 198 GLPTPLAWYSHHLPAWFLRLTTAFSLATELLLPPLFLLPLKGAKKIAFYFQLFLQLTIIATGNFNWYNLLTIALCLSLLD 277 (661)
Q Consensus 198 plPtplSWyaH~lP~~~~kl~v~~~~~iEi~~P~l~f~P~R~~R~~a~~~qvllQi~IilTGNy~FfN~LtivL~lsllD 277 (661)
|||||+||||||+|+|+||++|++||+|||++|||+|+|+|++|++||++||++|++||+||||||||+|||+||++|+|
T Consensus 77 PlPtplswy~H~lP~~~~kl~~~~~~~iEl~~p~l~f~P~r~~R~~~~~~~i~~q~~ii~tGNy~ffN~Ltivl~l~~lD 156 (384)
T PF06762_consen 77 PLPTPLSWYAHQLPKWFHKLSVAANHFIELVLPFLFFAPFRRLRLFAFYIQILLQLLIILTGNYNFFNLLTIVLCLSLLD 156 (384)
T ss_pred CCCCHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccch-hhhhHHHHHHHHHHHHHHhhhheeeeeeeceeecC-CCceeccccccchhhhhHHhhhhhhHHHHHHHH
Q psy10895 278 DSYFYPDLNR-KKNKLLSILSSMVSLVMFGATVFAFYKLFGIKVDQ-KNFTVQSQITFSKSQYDDYLGQGLILALYLGLA 355 (661)
Q Consensus 278 D~~l~~~~~~-~~~~~~~~~~~l~~~~v~~~~~~~~~~~f~~~~~~-~~~~~~s~~~ft~~~f~~~l~~~~~~~i~~~~~ 355 (661)
|+++....++ ..++. ...+. ++..... .++.......++ .++
T Consensus 157 D~~l~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~ 200 (384)
T PF06762_consen 157 DSFLNRFFPKFINSRL-------------------------IISDELQRKPALR--QFTKSSFSPLWK---------TLI 200 (384)
T ss_pred hHHHhhhccccccchh-------------------------hhhhhcccccccc--cccccccchHHH---------HHH
Confidence 9999875333 11110 00000 0000000 011111111111 111
Q ss_pred HHHHHHHHHhhhhccCCccccchhhhHHHHHHHHHHHHhhhhccccccccccccccccchhhhhhhccCccceeeeccCC
Q psy10895 356 SFIVTATTALWDTMRTPSKLGKLNSLVVTSFYIVTSLLIFSINTVPLANLHPAVNKTLHPMVKSWHGQLAHLHISNPYAL 435 (661)
Q Consensus 356 sl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lF~islvp~~~l~~~~~~~l~~~~~~~~~~~~~l~lvNsYGl 435 (661)
..+..+ .++..|+.|...+-... ..++..++||+++++||+||+||+
T Consensus 201 ~~~~~~-------------------------------~v~~~s~~~~~~l~s~~--~~~~~~~~m~~~~~~~~lvNsYGl 247 (384)
T PF06762_consen 201 VVFVAI-------------------------------LVLALSVPPVRNLFSPR--QIWNSLTKMNASFNPFHLVNSYGL 247 (384)
T ss_pred HHHHHH-------------------------------HHHHHHHHHHHHHhcch--hhhhhhHHHhhccccceEEecccc
Confidence 111111 11222222222111111 112245569999999999999999
Q ss_pred cccccCCCCcceEEEEeecCC--CCCceeecCccCCCCCCCCCCccCCCCcchhHHHHHhhcCCCCCCccHHHHHHHHHc
Q psy10895 436 FRVMTGVDGRPEVIIEGAQNR--QGPWTEIPFRYKPGNVNRTLPFVAPHQPRLDWQMWFAALGTYHQNPWISSLAYRILT 513 (661)
Q Consensus 436 F~~mTgv~~RpEvIiEGs~d~--~~~W~EyeF~yKPG~v~r~P~~vaPhqPRLDWqMWFAAl~~~~~~pWf~slv~rLL~ 513 (661)
||+|| ++|||||||||+|. +++|+||||+||||||+|+||+|+||||||||||||||+|++++||||.||++||||
T Consensus 248 F~~mt--~~R~EIIiEGs~d~~~~~~W~EYeF~~KPg~v~r~P~~vaPy~pRLDWqmWFaAl~~~~~~pWf~~ll~rLL~ 325 (384)
T PF06762_consen 248 FGSMT--KGRPEIIIEGSNDGDPTGPWREYEFKYKPGDVNRRPPFVAPYQPRLDWQMWFAALGTYQQNPWFLSLLYRLLQ 325 (384)
T ss_pred ccccC--CCceEEEEEeccCCCCCCceEEeecccCCCCcccCCCcCCcCCchhhHHHHhhccCCCCCCchHHHHHHHHHc
Confidence 99999 69999999999994 489999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHhhhhhcCCCCC-CCCCCceeeeeceeeeecCCCCCCC--CCeeeeeceeeccccccCC
Q psy10895 514 HQPEVLSLLDSTHYPF-KAKAPAFLRAVSYKYVYTPANTKAT--QWWIRKREEEYFPEFEANH 573 (661)
Q Consensus 514 ~~~~Vl~Ll~~~~~PF-~~~PP~yIRa~lY~Y~FT~~~~~~~--~WW~R~~~~ey~p~~~~~~ 573 (661)
|||||++||+ +||| +++|||||||++|+||||+++|+++ +||+|++ ||+||++++|
T Consensus 326 n~~~Vl~LL~--~nPF~~~~pP~~iRa~lY~Y~Ft~~~~~~~~g~WW~R~~--ey~P~~sl~~ 384 (384)
T PF06762_consen 326 NDPEVLSLLD--HNPFQPDKPPKYIRASLYRYRFTKPGERRRSGNWWTRER--EYFPPVSLEN 384 (384)
T ss_pred CCHHHHHHhc--cCCCCCCCCCcEEEeEEEEEecCCccccccCCCCeeeee--cccCCccCCC
Confidence 9999999999 9999 7999999999999999999977654 8999999 9999999986
No 2
>smart00752 HTTM Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.
Probab=99.35 E-value=4.6e-11 Score=124.71 Aligned_cols=233 Identities=15% Similarity=0.122 Sum_probs=168.0
Q ss_pred hccCccccCCCccchhhhcccCCCcchhhccccCC-eeeeeccccCCChHHHHHHHHHHHHHHHHHHhhhhccCchhHHH
Q psy10895 23 IQIPGLFGDNGILPARSQLEGDESLPLSKKLHRKP-TLLWLAPFIGLSTEYMMDVISLVGIFLAFTGFVSQKFCCKPNFF 101 (661)
Q Consensus 23 ~Qi~gL~G~~GilPa~~~L~~~~~~~~~~~~~~~P-tL~w~~~~~~l~~d~~l~~l~l~G~~LS~~~ll~~~~~~~~~~l 101 (661)
.++...|||.|..|-..+.. .+. ..| ++..+. ++...++++=.+.++.+++.+ .|++++++-+
T Consensus 31 ~~~~~~y~~~~~~~~~~~~~-------~~~--~~~~s~~~~~-----~s~~~~~~l~~~~~v~~l~~~--lG~~tR~~~~ 94 (271)
T smart00752 31 SDLDLRYGDPLFFCRLPFPL-------FDI--MSPLPFHMLS-----DSLDWMYLLYALMIVGALLLL--LGYRTRLSSV 94 (271)
T ss_pred CccceeeCCCCCCCCccccc-------ccc--cccchHhhcc-----CchhHHHHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence 78889999999999431110 011 112 111111 223345544444444444433 4999999999
Q ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHhcCCC---CCCCC--CCCCCCCCcchHHHHHHHHHHHHHhcCCccc
Q psy10895 102 ALWSLYYSLFQVGQTFMSFQWDTLLLETGFLCIIVSPFG---INKDS--SRKGSSPSDQVKFWLVRWLLFRLIVTSPINK 176 (661)
Q Consensus 102 ~LW~lYlSl~~vGQ~F~~FqWD~LLLE~GFLaiflaP~~---~~~~~--~~~~~~p~~~l~~wl~RwLlFRlmf~SGvvK 176 (661)
+.|++|.|+.+.. .....|=|...+-..|+.+|+ |.. +.|.. +.+.....+.....+++.-++=++|.||+.|
T Consensus 95 l~~l~~~sl~~r~-~~~~~ggd~~~~~~l~~l~f~-p~~~~~SvDa~~~~~~~~~~~~~~~~~~l~~q~~~vY~~ag~~K 172 (271)
T smart00752 95 LFWLLVWSIQLRD-KTVWNGGDHSYLVGLFLLLFL-PAGRYWSIDALRNRRRRDAIVPLWAYFVLRIQVFIIYFFAGLKK 172 (271)
T ss_pred HHHHHHHHHHhcc-hhhhcCccHHHHHHHHHHHHh-cCCCeEeeecccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997654 444567899999999999998 653 22211 1111123334455677777999999999999
Q ss_pred cccCCCcccccccchhhhhccCCCCchh-hhhccCchhHHHHHHHHHHHHHhhccceeecccchhhHHHHHHHHHHHHHH
Q psy10895 177 LSSGDPSWWTLKALGIHFQSMGLPTPLA-WYSHHLPAWFLRLTTAFSLATELLLPPLFLLPLKGAKKIAFYFQLFLQLTI 255 (661)
Q Consensus 177 l~s~cp~W~~LTAL~yHyETQplPtplS-WyaH~lP~~~~kl~v~~~~~iEi~~P~l~f~P~R~~R~~a~~~qvllQi~I 255 (661)
+.+ +.|++.||+.|.+.....++|.. |..++. ++.++.+.++.+.|+..|+++ .+ |+.|.++...-+.+|+.+
T Consensus 173 l~~--~~W~~G~A~~~~l~~~~~~~~~~~~l~~~~--~l~~~~t~~~l~~El~~~~ll-~~-~~~R~~~~~~~i~fH~~~ 246 (271)
T smart00752 173 LDG--DEWVDGTAMYYLLSLDWFFSPLDLVLLEFP--PLLLAVTWGGLLFDLFFPFLL-FN-RRTRPIGLVVFIAFHLGN 246 (271)
T ss_pred cCC--ccccCCceeehHHhCCccccchhhhhhcch--HHHHHHHHHHHHHHHHHHHHh-hh-hHHHHHHHHHHHHHHHHH
Confidence 963 56999999999765666677777 555554 889999999999999999997 44 889999999999999999
Q ss_pred HhhcChhHHHHHHHHHHHhhccCC
Q psy10895 256 IATGNFNWYNLLTIALCLSLLDDS 279 (661)
Q Consensus 256 ilTGNy~FfN~LtivL~lsllDD~ 279 (661)
.++-|-+.|-+.+++..+..+++.
T Consensus 247 ~~~~~i~~F~~~mi~~~~~f~~~~ 270 (271)
T smart00752 247 AVLFGIGMFPFVMIGALPLFLPPE 270 (271)
T ss_pred HHHHHHhhHHHHHHHHhhhcCCCC
Confidence 999999999999999887777653
No 3
>PF05090 VKG_Carbox: Vitamin K-dependent gamma-carboxylase; InterPro: IPR007782 Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase [].; GO: 0008488 gamma-glutamyl carboxylase activity, 0017187 peptidyl-glutamic acid carboxylation
Probab=98.91 E-value=2.3e-08 Score=111.48 Aligned_cols=181 Identities=19% Similarity=0.214 Sum_probs=138.2
Q ss_pred hccCchhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHhcCCC--CCCCC--CCCCCCCCcchHHHHHHHHHHH
Q psy10895 92 QKFCCKPNFFALWSLYYSLFQVGQTFMSFQWDTLLLETGFLCIIVSPFG--INKDS--SRKGSSPSDQVKFWLVRWLLFR 167 (661)
Q Consensus 92 ~~~~~~~~~l~LW~lYlSl~~vGQ~F~~FqWD~LLLE~GFLaiflaP~~--~~~~~--~~~~~~p~~~l~~wl~RwLlFR 167 (661)
.|++.+++.++.+++|.+++....+-|. +=|.++--..|+.+|+.-.+ +.|.. +.......+.-..+++|.-++=
T Consensus 67 lG~~~R~s~i~f~l~~~yi~l~d~~~~~-nh~yL~~ll~fll~f~pa~~~~SlDa~~~~~~~~~~vp~w~~~li~~Ql~i 145 (446)
T PF05090_consen 67 LGYRYRLSIILFFLLFTYIFLLDKTSYN-NHYYLLRLLLFLLIFLPAGRYWSLDAWRRPRIRNTTVPNWALRLIQFQLFI 145 (446)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhCccccc-cHHHHHHHHHHHHHHccCCCcccchhhhcccccCCcccHHHHHHHHHHHHH
Confidence 4999888877777778777666555433 44677766788888764332 33321 1112223334445566777999
Q ss_pred HHhcCCccccccCCCcccccccchhhhhccCCCCchh-hhhccCchhHHHHHHHHHHHHHhhccceeecccchhhHHHHH
Q psy10895 168 LIVTSPINKLSSGDPSWWTLKALGIHFQSMGLPTPLA-WYSHHLPAWFLRLTTAFSLATELLLPPLFLLPLKGAKKIAFY 246 (661)
Q Consensus 168 lmf~SGvvKl~s~cp~W~~LTAL~yHyETQplPtplS-WyaH~lP~~~~kl~v~~~~~iEi~~P~l~f~P~R~~R~~a~~ 246 (661)
++|.||+-|+. +| |.+.|++.+|.-..+...|+. +.+++. |++.+.+.++.+.|+.+|++++ .|+.|.+++.
T Consensus 146 VYf~Agl~Kl~-~d--Wl~G~~l~~~~~~~~~~~~l~~~l~~~~--~v~~~~s~~~ll~eL~~~~lLl--~rrtR~~a~~ 218 (446)
T PF05090_consen 146 VYFYAGLAKLN-PD--WLDGTALLYIWLFDPFDLPLLGELLSQP--WVHWAFSWGGLLFELSIPFLLL--WRRTRPIAFI 218 (446)
T ss_pred HHHHHHHHHCc-cc--ccCCchhHHHHhccccccccHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH
Confidence 99999999996 34 999999999998888887744 555553 8999999999999999999876 4789999999
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHhhccCCC
Q psy10895 247 FQLFLQLTIIATGNFNWYNLLTIALCLSLLDDSY 280 (661)
Q Consensus 247 ~qvllQi~IilTGNy~FfN~LtivL~lsllDD~~ 280 (661)
.-+++|+++.++=|-+.|-+.+|+..+..+|++.
T Consensus 219 ~~i~FHl~~~~lf~IG~Fp~vmia~~llF~~~~~ 252 (446)
T PF05090_consen 219 AGILFHLGNSVLFGIGMFPYVMIAFYLLFFPPEW 252 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 9999999999999999999999998888888765
No 4
>COG2259 Predicted membrane protein [Function unknown]
Probab=72.53 E-value=13 Score=35.46 Aligned_cols=88 Identities=26% Similarity=0.354 Sum_probs=68.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCccccccCCCcccccccchhhhhccCCCCchhhhhccCchhHHHHHHHHHHHHHhhccce
Q psy10895 153 SDQVKFWLVRWLLFRLIVTSPINKLSSGDPSWWTLKALGIHFQSMGLPTPLAWYSHHLPAWFLRLTTAFSLATELLLPPL 232 (661)
Q Consensus 153 ~~~l~~wl~RwLlFRlmf~SGvvKl~s~cp~W~~LTAL~yHyETQplPtplSWyaH~lP~~~~kl~v~~~~~iEi~~P~l 232 (661)
.+.+.....|.++-=+.+.+|.-|+. + +...-.-.+|++.+|-| .+....+-+.|++.+.+
T Consensus 11 ~~~~~lli~Rl~l~~~fi~~G~~K~~--~----~~~g~~~~~~~~g~p~~-------------~~~a~~~~~~El~~gll 71 (142)
T COG2259 11 LSDLGLLILRLLLALIFIVSGLGKLF--G----GLAGTIQYFESLGLPPP-------------TLLAILAAILELVGGLL 71 (142)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHc--c----CcHHHHHHHHHcCCChH-------------HHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999997 2 77777788888888876 23333478899999999
Q ss_pred eecccchhhHHHHHHHHHHHHHHHhhcC
Q psy10895 233 FLLPLKGAKKIAFYFQLFLQLTIIATGN 260 (661)
Q Consensus 233 ~f~P~R~~R~~a~~~qvllQi~IilTGN 260 (661)
+... ...|..|+..-+++-+.++..-+
T Consensus 72 lllG-l~tr~aA~~l~~~~l~a~~~~h~ 98 (142)
T COG2259 72 LLLG-LFTRLAALVLAVFMLVAIFAVHA 98 (142)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 67888888777666666555333
No 5
>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []. They are predicted inner membrane proteins.
Probab=53.17 E-value=25 Score=30.03 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCccccccCCCcccccccchhhhhccCCCCchhhhhccCchhHHHHHHHHHHHHHhhccceeecccch
Q psy10895 160 LVRWLLFRLIVTSPINKLSSGDPSWWTLKALGIHFQSMGLPTPLAWYSHHLPAWFLRLTTAFSLATELLLPPLFLLPLKG 239 (661)
Q Consensus 160 l~RwLlFRlmf~SGvvKl~s~cp~W~~LTAL~yHyETQplPtplSWyaH~lP~~~~kl~v~~~~~iEi~~P~l~f~P~R~ 239 (661)
..|.++==.++.+|+.|+.+ -+.+.....+++..+|. -......+-++|++.+.++... +.
T Consensus 4 ~~Ri~lg~~f~~~G~~K~~~-----~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~E~~~gl~l~~G-~~ 64 (85)
T PF07681_consen 4 ILRILLGLVFLFHGLQKLFG-----FGPEGFAGFFAPFGLPP-------------PGLFAYLAGIAELVGGLLLLLG-LF 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHcC-----CCcHHHHHHHHHcCCCc-------------hHHHHHHHHHHHHHHHHHHHHh-hH
Confidence 56777777888899999974 12222333344444433 3455666778999999999988 56
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy10895 240 AKKIAFYFQLFLQLTII 256 (661)
Q Consensus 240 ~R~~a~~~qvllQi~Ii 256 (661)
.|..|.. .+.+.+.++
T Consensus 65 tr~aa~~-~~~~~~~~~ 80 (85)
T PF07681_consen 65 TRLAALV-LALFMLVAT 80 (85)
T ss_pred HHHHHHH-HHHHHHHHH
Confidence 6766644 444444443
No 6
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=46.41 E-value=6 Score=24.75 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=9.6
Q ss_pred cccchhhhhccCC
Q psy10895 187 LKALGIHFQSMGL 199 (661)
Q Consensus 187 LTAL~yHyETQpl 199 (661)
.....+-||||||
T Consensus 3 V~~~~wlFEtqpl 15 (16)
T PF08043_consen 3 VKTTRWLFETQPL 15 (16)
T ss_pred cceeEEEeecccC
Confidence 3445678999997
No 7
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=40.12 E-value=20 Score=35.94 Aligned_cols=78 Identities=31% Similarity=0.440 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHHHHhcCCccccccCCCcccccccchhhhhccCCCCchhhhhccCchhHHHHHHHHHHHHHhhccce
Q psy10895 153 SDQVKFWLVRWLLFRLIVTSPINKLSSGDPSWWTLKALGIHFQSMGLPTPLAWYSHHLPAWFLRLTTAFSLATELLLPPL 232 (661)
Q Consensus 153 ~~~l~~wl~RwLlFRlmf~SGvvKl~s~cp~W~~LTAL~yHyETQplPtplSWyaH~lP~~~~kl~v~~~~~iEi~~P~l 232 (661)
.|++..+..|.++.=++..||+.|+++ +. .|+.+ ++=| .-+|+++.+.-.+..-.+|+++-.+
T Consensus 5 ~~P~v~~~~r~~l~llf~~aai~Kl~d--~~---------~F~~~-----i~~y-~llP~~~~~~~A~~lP~~El~~gl~ 67 (184)
T PF07291_consen 5 NDPVVSLLLRLFLALLFLYAAISKLRD--PE---------AFAAS-----IAAY-RLLPDWLVRPVAWALPWLELALGLL 67 (184)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHcC--HH---------HHHHH-----HHHc-ccChHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999983 21 12111 1111 2367888888777788999999988
Q ss_pred eecccchhhHHHHHHHH
Q psy10895 233 FLLPLKGAKKIAFYFQL 249 (661)
Q Consensus 233 ~f~P~R~~R~~a~~~qv 249 (661)
++.| . .|..+++...
T Consensus 68 Ll~~-~-~~~~a~~~a~ 82 (184)
T PF07291_consen 68 LLFP-P-TRRWAALLAA 82 (184)
T ss_pred HHHH-H-HHHHHHHHHH
Confidence 8888 3 4444544433
No 8
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=28.88 E-value=1.3e+02 Score=26.42 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHhh
Q psy10895 240 AKKIAFYFQLFLQLTIIATGNFNWYNLLTIALCLSL 275 (661)
Q Consensus 240 ~R~~a~~~qvllQi~IilTGNy~FfN~LtivL~lsl 275 (661)
.+..-+..|+.+=.++++|+|.-|.+++.+..++..
T Consensus 25 ~n~sF~~L~~~l~~Ll~~t~niHfivL~~l~~~Lw~ 60 (75)
T PF08636_consen 25 TNVSFAALFLVLLALLFLTYNIHFIVLSFLALGLWA 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 444556667777788999999999999998887654
No 9
>PF12077 DUF3556: Transmembrane protein of unknown function (DUF3556); InterPro: IPR021941 This family of transmembrane proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 576 to 592 amino acids in length.
Probab=27.04 E-value=1.1e+02 Score=35.75 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCccccc-----------cCCCcccccccchhhhhccC---CCCchhhhhccCchhHHHHHHHHHHH
Q psy10895 159 WLVRWLLFRLIVTSPINKLS-----------SGDPSWWTLKALGIHFQSMG---LPTPLAWYSHHLPAWFLRLTTAFSLA 224 (661)
Q Consensus 159 wl~RwLlFRlmf~SGvvKl~-----------s~cp~W~~LTAL~yHyETQp---lPtplSWyaH~lP~~~~kl~v~~~~~ 224 (661)
-..+-+..-+=.|+|+.|+- |+.|..+.-.--.-||+.-| -|+-+|++.-|. + -.
T Consensus 227 vaaKlv~~~iW~GAg~SKln~HFp~VV~~M~SNsP~~~~~~lKR~~yr~~PdDLRPs~la~~~AH~-------g----T~ 295 (574)
T PF12077_consen 227 VAAKLVIVVIWLGAGTSKLNHHFPFVVPTMMSNSPWLRSKWLKRAHYRNFPDDLRPSRLARFMAHG-------G----TA 295 (574)
T ss_pred HHHHHHHHHHHhhhhhhhcccCCCcccchhccCCCCCCcHHHHHHHhhcCCcccCcchHHHHHHhc-------c----ee
Confidence 36677777788899999973 66676665544445555544 466666554333 2 36
Q ss_pred HHhhccceee-cccchhhHHHHHHHHHHHHHHHhh
Q psy10895 225 TELLLPPLFL-LPLKGAKKIAFYFQLFLQLTIIAT 258 (661)
Q Consensus 225 iEi~~P~l~f-~P~R~~R~~a~~~qvllQi~IilT 258 (661)
+|+++|..+| +-...+..+|...++.+|+.|+-|
T Consensus 296 vE~~vPlvL~fs~~~~~t~~a~~~Mv~FHl~I~S~ 330 (574)
T PF12077_consen 296 VEILVPLVLLFSTGGWPTWVAAAVMVCFHLFILST 330 (574)
T ss_pred eeeecceEEEEccCCcHHHHHHHHHHHHHHHHHhc
Confidence 7999998755 444778999999999999999866
No 10
>PF08760 DUF1793: Domain of unknown function (DUF1793); InterPro: IPR014870 This domain is found at the C terminus of a glutaminase protein from fungi []. It is also found as a single domain protein in Bacteroides thetaiotaomicron.
Probab=26.05 E-value=40 Score=33.75 Aligned_cols=38 Identities=26% Similarity=0.605 Sum_probs=25.9
Q ss_pred chhHHHHHhhcCCCCCCccHHHHHHHHHcCChhHhhhhhcCCCCCC
Q psy10895 485 RLDWQMWFAALGTYHQNPWISSLAYRILTHQPEVLSLLDSTHYPFK 530 (661)
Q Consensus 485 RLDWqMWFAAl~~~~~~pWf~slv~rLL~~~~~Vl~Ll~~~~~PF~ 530 (661)
.-||+||=||+.+.+.--=|++-+++=+++.+. +-||.
T Consensus 103 KsDW~~wtAa~a~~~~r~~~i~~v~~~~~~t~~--------~~pft 140 (171)
T PF08760_consen 103 KSDWEMWTAALASDDTRDAFIDPVWKFANETPS--------RVPFT 140 (171)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhCCCC--------CCCcc
Confidence 469999999999865434455555666665554 66775
Done!