Query psy10895
Match_columns 661
No_of_seqs 162 out of 261
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 21:11:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f59_A Ankyrin-1; beta sandwic 11.2 1.3E+02 0.0045 28.5 2.8 30 436-468 89-118 (161)
2 2ot8_C HnRNP M, heterogeneous 10.9 77 0.0027 21.9 0.8 16 644-659 5-20 (30)
3 3mbk_A Ubiquitin-associated an 8.3 2.9E+02 0.0099 26.8 4.2 35 211-245 60-96 (264)
4 1aps_A Acylphosphatase; hydrol 7.4 79 0.0027 27.1 -0.4 29 427-455 27-56 (98)
5 1urr_A CG18505 protein; acylph 7.2 72 0.0025 27.6 -0.8 29 427-455 31-60 (102)
6 2vh7_A Acylphosphatase-1; hydr 7.1 86 0.0029 26.9 -0.3 29 427-455 28-57 (99)
7 1ulr_A Putative acylphosphatas 6.9 77 0.0026 26.6 -0.7 28 428-455 23-51 (88)
8 2fhm_A Probable acylphosphatas 6.8 86 0.0029 26.4 -0.4 28 428-455 23-51 (91)
9 1w2i_A Acylphosphatase; hydrol 6.7 82 0.0028 26.6 -0.6 28 428-455 25-53 (91)
10 2bjd_A Acylphosphatase; hypert 6.5 96 0.0033 26.9 -0.3 29 427-455 34-63 (101)
No 1
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=11.17 E-value=1.3e+02 Score=28.54 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=18.2
Q ss_pred cccccCCCCcceEEEEeecCCCCCceeecCccC
Q psy10895 436 FRVMTGVDGRPEVIIEGAQNRQGPWTEIPFRYK 468 (661)
Q Consensus 436 F~~mTgv~~RpEvIiEGs~d~~~~W~EyeF~yK 468 (661)
|..++ ++..||||--|+| |..|+|-.-.++
T Consensus 89 ~a~~~--~~eREvvvlrSdn-G~sW~eh~~~~~ 118 (161)
T 3f59_A 89 FASHG--RGDRELVVLRSEN-GSVWKEHRSRYG 118 (161)
T ss_dssp C----------CEEEEEESS-SSCCEECCCSSC
T ss_pred cccCC--CCceEEEEEECCC-CCCccccccccc
Confidence 45677 4778999999988 899999876654
No 2
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=10.91 E-value=77 Score=21.90 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=12.5
Q ss_pred ccCCCCcccccccCCC
Q psy10895 644 SHGKSKSQQQHQSSGS 659 (661)
Q Consensus 644 ~~~~~~~~~~~~~~~~ 659 (661)
.+||+|.+++|.+||.
T Consensus 5 ~~e~rkEk~~Krggnr 20 (30)
T 2ot8_C 5 QNEKRKEKNIKRGGNR 20 (30)
T ss_pred ccchhhccccccCCcc
Confidence 5778889999987663
No 3
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=8.31 E-value=2.9e+02 Score=26.81 Aligned_cols=35 Identities=9% Similarity=-0.119 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHHHHhhc--cceeecccchhhHHHH
Q psy10895 211 PAWFLRLTTAFSLATELLL--PPLFLLPLKGAKKIAF 245 (661)
Q Consensus 211 P~~~~kl~v~~~~~iEi~~--P~l~f~P~R~~R~~a~ 245 (661)
+....+...++..+.+... --.+-.|.+|.+-.|-
T Consensus 60 ~~G~~QA~~l~~~L~~~~~~~d~v~sSpl~Ra~qTA~ 96 (264)
T 3mbk_A 60 VFGCMQARLVGEALLESNTVIDHVYCSPSLRCVQTAH 96 (264)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEECSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCcCEEEECcHHHHHHHHH
Confidence 4566777777777775433 3356788877777663
No 4
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=7.44 E-value=79 Score=27.10 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=21.5
Q ss_pred ceeeeccCCcccccCC-CCcceEEEEeecC
Q psy10895 427 LHISNPYALFRVMTGV-DGRPEVIIEGAQN 455 (661)
Q Consensus 427 l~lvNsYGlF~~mTgv-~~RpEvIiEGs~d 455 (661)
++++..+|+-|-+... +||-||++||+.+
T Consensus 27 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~ 56 (98)
T 1aps_A 27 EDEARKIGVVGWVKNTSKGTVTGQVQGPEE 56 (98)
T ss_dssp HHHHHHHTCEEEEECCTTCEEEEEEEEEHH
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEeCHH
Confidence 3566677777766554 6789999999864
No 5
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=7.16 E-value=72 Score=27.58 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=21.2
Q ss_pred ceeeeccCCcccccCC-CCcceEEEEeecC
Q psy10895 427 LHISNPYALFRVMTGV-DGRPEVIIEGAQN 455 (661)
Q Consensus 427 l~lvNsYGlF~~mTgv-~~RpEvIiEGs~d 455 (661)
+++++.+|+-|-+... +||-||++||+.+
T Consensus 31 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~ 60 (102)
T 1urr_A 31 SHEAKRLGVRGWCMNTRDGTVKGQLEAPMM 60 (102)
T ss_dssp HHHHHHHTCEEEEEECTTSCEEEEEEECHH
T ss_pred HHHHHHhCCcEEEEECCCCCEEEEEEcCHH
Confidence 3566677777765544 6799999999864
No 6
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=7.12 E-value=86 Score=26.92 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=21.0
Q ss_pred ceeeeccCCcccccCC-CCcceEEEEeecC
Q psy10895 427 LHISNPYALFRVMTGV-DGRPEVIIEGAQN 455 (661)
Q Consensus 427 l~lvNsYGlF~~mTgv-~~RpEvIiEGs~d 455 (661)
++++..+|+-|-+... .||-||++||+.+
T Consensus 28 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~ 57 (99)
T 2vh7_A 28 QAEGKKLGLVGWVQNTDRGTVQGQLQGPIS 57 (99)
T ss_dssp HHHHHHTTCEEEEEECTTSCEEEEEEEEHH
T ss_pred HHHHHHcCCcEEEEECCCCCEEEEEEcCHH
Confidence 3556667777755444 6799999999864
No 7
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=6.90 E-value=77 Score=26.63 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=20.6
Q ss_pred eeeeccCCcccccCC-CCcceEEEEeecC
Q psy10895 428 HISNPYALFRVMTGV-DGRPEVIIEGAQN 455 (661)
Q Consensus 428 ~lvNsYGlF~~mTgv-~~RpEvIiEGs~d 455 (661)
++++.+|+=|.+... +||-||++||+.+
T Consensus 23 ~~A~~lgl~G~V~N~~dG~Vei~~eG~~~ 51 (88)
T 1ulr_A 23 KKALELGLSGYAENLPDGRVEVVAEGPKE 51 (88)
T ss_dssp HHHHHTTCEEEEEECTTSCEEEEEESCHH
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEeCHH
Confidence 456667777765544 6799999999864
No 8
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=6.82 E-value=86 Score=26.44 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=20.4
Q ss_pred eeeeccCCcccccCC-CCcceEEEEeecC
Q psy10895 428 HISNPYALFRVMTGV-DGRPEVIIEGAQN 455 (661)
Q Consensus 428 ~lvNsYGlF~~mTgv-~~RpEvIiEGs~d 455 (661)
++++.+|+=|.+... +||-||++||+.+
T Consensus 23 ~~A~~lgl~G~V~N~~dG~Vei~~eG~~~ 51 (91)
T 2fhm_A 23 MEADKRKLAGWVKNRDDGRVEILAEGPEN 51 (91)
T ss_dssp HHHHHTTCEEEEEECTTSCEEEEEEECHH
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEeCHH
Confidence 456667777755544 6899999999864
No 9
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=6.70 E-value=82 Score=26.64 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=20.3
Q ss_pred eeeeccCCcccccCC-CCcceEEEEeecC
Q psy10895 428 HISNPYALFRVMTGV-DGRPEVIIEGAQN 455 (661)
Q Consensus 428 ~lvNsYGlF~~mTgv-~~RpEvIiEGs~d 455 (661)
++++.+|+=|.+... +||-||++||+.+
T Consensus 25 ~~A~~lgL~G~V~N~~dG~Vei~~~G~~~ 53 (91)
T 1w2i_A 25 REARKLGVNGWVRNLPDGSVEAVLEGDEE 53 (91)
T ss_dssp HHHHHHTCEEEEEECTTSCEEEEEEEEHH
T ss_pred HHHHHcCCeEEEEECCCCCEEEEEEeCHH
Confidence 456666776655444 6899999999864
No 10
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=6.54 E-value=96 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=21.2
Q ss_pred ceeeeccCCcccccCC-CCcceEEEEeecC
Q psy10895 427 LHISNPYALFRVMTGV-DGRPEVIIEGAQN 455 (661)
Q Consensus 427 l~lvNsYGlF~~mTgv-~~RpEvIiEGs~d 455 (661)
+++++.+|+-|.+... .||-||++||+.+
T Consensus 34 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~ 63 (101)
T 2bjd_A 34 QIHAIRLGIKGYAKNLPDGSVEVVAEGYEE 63 (101)
T ss_dssp HHHHHHTTCEEEEEECTTSCEEEEEEEEHH
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEeCHH
Confidence 3556677777765544 6899999999864
Done!