Query psy10895
Match_columns 661
No_of_seqs 162 out of 261
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 21:11:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10895.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10895hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d0gr3 g.24.1.1 (R:102-128) D 16.1 21 0.0015 22.2 0.8 19 172-191 8-26 (27)
2 d1guqa1 d.13.1.2 (A:2-177) Gal 11.4 36 0.0026 30.1 1.3 21 434-455 94-114 (176)
3 d1tvxa_ d.9.1.1 (A:) Platelet 11.3 42 0.0031 24.8 1.4 16 500-515 49-64 (64)
4 d2nn6g3 d.51.1.1 (G:195-274) R 8.1 96 0.007 24.1 2.5 25 505-530 9-33 (80)
5 d1z84a1 d.13.1.2 (A:23-195) Ga 8.0 59 0.0043 28.5 1.3 23 432-455 89-111 (173)
6 d2fbqa2 a.121.1.1 (A:81-214) T 7.6 2.2E+02 0.016 23.3 4.9 39 595-633 55-93 (134)
7 d1su3a1 a.20.1.2 (A:32-98) Fib 7.3 1.6E+02 0.012 21.7 3.5 34 576-609 3-40 (67)
8 d1slma1 a.20.1.2 (A:16-80) Str 6.8 2.2E+02 0.016 20.8 4.0 34 576-609 2-39 (65)
9 d1jhja_ b.18.1.9 (A:) APC10/DO 6.6 1.2E+02 0.0087 25.7 2.7 18 446-464 91-108 (161)
10 d1j6ua2 c.59.1.1 (A:296-446) U 6.0 1.1E+02 0.0079 25.4 2.0 15 441-455 1-15 (151)
No 1
>d1d0gr3 g.24.1.1 (R:102-128) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.12 E-value=21 Score=22.22 Aligned_cols=19 Identities=11% Similarity=0.301 Sum_probs=15.4
Q ss_pred CCccccccCCCcccccccch
Q psy10895 172 SPINKLSSGDPSWWTLKALG 191 (661)
Q Consensus 172 SGvvKl~s~cp~W~~LTAL~ 191 (661)
-|.||. +.|.-|.|..|.+
T Consensus 8 rg~vkv-~dctpwsdi~cvh 26 (27)
T d1d0gr3 8 RGMVKV-GDCTPWSDIECVH 26 (27)
T ss_dssp TTCEEE-ECCBTTBCCEEEC
T ss_pred CcceEe-ccCcccccceeec
Confidence 388999 5799999998754
No 2
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=11.39 E-value=36 Score=30.10 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.7
Q ss_pred CCcccccCCCCcceEEEEeecC
Q psy10895 434 ALFRVMTGVDGRPEVIIEGAQN 455 (661)
Q Consensus 434 GlF~~mTgv~~RpEvIiEGs~d 455 (661)
|+|.+|.| .|+.|||||..+.
T Consensus 94 ~l~~~~~~-~G~heVIi~sp~H 114 (176)
T d1guqa1 94 PLMRCQSA-RGTSRVICFSPDH 114 (176)
T ss_dssp SSSCEEEC-CEEEEEEESCSCT
T ss_pred cccccCCC-CCceeEEEECccc
Confidence 56778888 6999999999875
No 3
>d1tvxa_ d.9.1.1 (A:) Platelet basic protein, PBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.31 E-value=42 Score=24.83 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=14.5
Q ss_pred CCccHHHHHHHHHcCC
Q psy10895 500 QNPWISSLAYRILTHQ 515 (661)
Q Consensus 500 ~~pWf~slv~rLL~~~ 515 (661)
..+|...++.|||+||
T Consensus 49 ~~~WVq~li~kll~~~ 64 (64)
T d1tvxa_ 49 DAPRIKKIVQKKLAGD 64 (64)
T ss_dssp TCHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHcCC
Confidence 5899999999999986
No 4
>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.06 E-value=96 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=20.8
Q ss_pred HHHHHHHHcCChhHhhhhhcCCCCCC
Q psy10895 505 SSLAYRILTHQPEVLSLLDSTHYPFK 530 (661)
Q Consensus 505 ~slv~rLL~~~~~Vl~Ll~~~~~PF~ 530 (661)
.+|+.|||..+.+|++.|.. +.||+
T Consensus 9 l~laR~Ll~~~~~vL~~Lgk-~~~FE 33 (80)
T d2nn6g3 9 LGLIRKLLAPDCEIIQEVGK-LYPLE 33 (80)
T ss_dssp HHHHHHHHCTTCSHHHHTTC-SSSCC
T ss_pred HHHHHHHhcCCCHHHHHHhh-hCCeE
Confidence 47899999999999999963 57875
No 5
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.00 E-value=59 Score=28.52 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=15.7
Q ss_pred ccCCcccccCCCCcceEEEEeecC
Q psy10895 432 PYALFRVMTGVDGRPEVIIEGAQN 455 (661)
Q Consensus 432 sYGlF~~mTgv~~RpEvIiEGs~d 455 (661)
--|++++|.| .|+.|||||..+.
T Consensus 89 ~~~~~~~~~~-~G~heVIi~sp~H 111 (173)
T d1z84a1 89 ETGTSRTIVG-FGFHDVVIESPVH 111 (173)
T ss_dssp -----CEEEC-BCEEEEEECCSSS
T ss_pred cCcceeeccc-ccceeeEEeCccc
Confidence 3477788888 5999999999875
No 6
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.62 E-value=2.2e+02 Score=23.25 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHhhCCCCchHHHHHHHHHHhhhhhhcc
Q psy10895 595 EPQVKDALDSIRKYTATADPAILLWSFFITGLAIIYLRG 633 (661)
Q Consensus 595 ~~~l~~~l~~~r~~~~~~~~~~ll~~l~~a~~~~~~~~~ 633 (661)
+.....+++.+++.+.++++..+.|.+..+++++..+-.
T Consensus 55 ~p~~~rf~~al~~alP~l~~~el~wr~~f~vga~~~~l~ 93 (134)
T d2fbqa2 55 GKVFRRYMLLVNEAAPKLPPIELFWRVHFMLGAAAFSMS 93 (134)
T ss_dssp HHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456777999999999999999999999999887765554
No 7
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.32 E-value=1.6e+02 Score=21.72 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCcCCCCC----CCchHHHHHHHHHHHhh
Q psy10895 576 LIAYLTQFGILKKRKPE----HIEPQVKDALDSIRKYT 609 (661)
Q Consensus 576 L~~~L~~~g~~~k~~~~----~~~~~l~~~l~~~r~~~ 609 (661)
.++||+++|-..+...+ .....+..+|+...++.
T Consensus 3 ~~~YL~~fgyl~~~~~~~~~~~~~~~~~~Aik~fQ~f~ 40 (67)
T d1su3a1 3 VQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFF 40 (67)
T ss_dssp HHHHHHHHSCCC------------CHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHc
Confidence 57899999976654332 23445777777777763
No 8
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=6.81 E-value=2.2e+02 Score=20.82 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCcCCCCC----CCchHHHHHHHHHHHhh
Q psy10895 576 LIAYLTQFGILKKRKPE----HIEPQVKDALDSIRKYT 609 (661)
Q Consensus 576 L~~~L~~~g~~~k~~~~----~~~~~l~~~l~~~r~~~ 609 (661)
.++||+++|-..+.... ..+..+..+|+...++.
T Consensus 2 ~~~YL~~fgyl~~~~~~~~~~~~~~~l~~Ai~~~Q~f~ 39 (65)
T d1slma1 2 VQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFL 39 (65)
T ss_dssp HHHHHHHHSCCCCC---------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCcccccccccHHHHHHHHHHHHHHc
Confidence 46899999966554322 33456777777777663
No 9
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.56 E-value=1.2e+02 Score=25.71 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.2
Q ss_pred ceEEEEeecCCCCCceeec
Q psy10895 446 PEVIIEGAQNRQGPWTEIP 464 (661)
Q Consensus 446 pEvIiEGs~d~~~~W~Eye 464 (661)
.++.|||++| +..|+++.
T Consensus 91 ~~~~i~~s~d-~~~w~~v~ 108 (161)
T d1jhja_ 91 SKISVRVGNN-FHNLQEIR 108 (161)
T ss_dssp EEEEEEEESS-TTSCEEEE
T ss_pred EEEEEEEcCC-cCCceeEE
Confidence 5889999999 88998863
No 10
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=6.01 E-value=1.1e+02 Score=25.35 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.4
Q ss_pred CCCCcceEEEEeecC
Q psy10895 441 GVDGRPEVIIEGAQN 455 (661)
Q Consensus 441 gv~~RpEvIiEGs~d 455 (661)
||++|.|++.++...
T Consensus 1 Gv~rR~e~i~~~~~~ 15 (151)
T d1j6ua2 1 GVHRRFSIAFHDPET 15 (151)
T ss_dssp CCTTSSEEEEEETTT
T ss_pred CCCCCeEEEEecCCC
Confidence 789999999888643
Done!