RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10895
(661 letters)
>gnl|CDD|219165 pfam06762, LMF1, Lipase maturation factor. This family of
transmembrane proteins includes the lipase maturation
factor, LMF1. Lipoprotein lipase and hepatic lipase
require LMF1 to fold into their active states. The
precise role of LMF1 in lipase folding has yet to be
determined.
Length = 371
Score = 186 bits (474), Expect = 4e-53
Identities = 83/230 (36%), Positives = 111/230 (48%), Gaps = 15/230 (6%)
Query: 348 LALYLGLASFIVTATTALWDTMRTPSKLGKLNSLVVTSFYIVTS---LLIFSINTVPLAN 404
L + L L+ + L+ + R P S Y+V LLI +++ + N
Sbjct: 145 LTIVLALSLLDDSFLAFLFPSKREPDSRRLPASPPPLWKYLVVLLVALLILALSLWVVLN 204
Query: 405 LHPAVNKTLHPMVKSWHGQLAHLHISNPYALFRVMTGVDGRPEVIIEG--AQNRQGPWTE 462
L + + + + H+ N Y F MT GRPEVIIEG W E
Sbjct: 205 LLSSRQRNNLAFM---NSSFNPFHLVNTYGAFGSMTK--GRPEVIIEGTHDGEIDTVWRE 259
Query: 463 IPFRYKPGNVNRTLPFVAPHQPRLDWQMWFAALGTYHQNPWISSLAYRILTHQPEVLSLL 522
F+YKPG+V+R +AP+ PRLDWQMWFAALGTY Q PW S ++L + P+VLSLL
Sbjct: 260 YEFKYKPGDVSRIPRQIAPYHPRLDWQMWFAALGTYEQPPWFLSFLKKLLQNDPDVLSLL 319
Query: 523 DSTHYPFKAKAPAFLRAVSYKYVYTPANTKAT---QWWIRKREEEYFPEF 569
H PF P F+RA Y+Y +T + QWW R EY P
Sbjct: 320 A--HNPFPDDPPRFVRARLYRYRFTTFAKERRETGQWWRRTLVGEYVPPV 367
Score = 182 bits (464), Expect = 1e-51
Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 17/226 (7%)
Query: 118 MSFQWDTLLLETGFLCIIVSPFGINKDSSRKGSSPSDQVKFWLVRWLLFRLIVTSPINKL 177
SFQWD+LLLE GFL I ++P G++ G +P + WL+RWLLFRL+ S + KL
Sbjct: 1 YSFQWDSLLLEAGFLAIFLAPLGLS---DLLGLTPPPTLVLWLLRWLLFRLMFGSGLIKL 57
Query: 178 SSGDPSWWTLKALGIHFQSMGLPTPLAWYSHHLPAWFLRLTTAFSLATELLLPPLFLLPL 237
GDP W L AL H+++ LPTPL+WY+HHLP + +L A + EL++P L P
Sbjct: 58 R-GDPCWRDLTALYYHYETQPLPTPLSWYAHHLPKFLHKLEVAANHFIELVVPFLLFAPR 116
Query: 238 KGAKKIAFYFQLFLQLTIIATGNFNWYNLLTIALCLSLLDDS---YFYPDLNRKKNKLLS 294
+ + AF Q+ LQ+ II +GN+ ++N LTI L LSLLDDS + +P ++ L
Sbjct: 117 R-LRLFAFALQILLQILIILSGNYAFFNWLTIVLALSLLDDSFLAFLFPSKREPDSRRLP 175
Query: 295 ---------ILSSMVSLVMFGATVFAFYKLFGIKVDQKNFTVQSQI 331
++ +V+L++ +++ L + + S
Sbjct: 176 ASPPPLWKYLVVLLVALLILALSLWVVLNLLSSRQRNNLAFMNSSF 221
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 33.1 bits (76), Expect = 0.55
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKKRKPEHIEPQVKDALDSIRK 607
IRK E+ +ANH ++ + K+ E +E ++K+AL + +K
Sbjct: 452 IRKFEQALLAYLDANHPDILEEINT----TKKLTEELEAKLKEALKNFKK 497
>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 31.3 bits (72), Expect = 1.2
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSI 605
+RKR E Y PLI Y + G LKK + + + AL +
Sbjct: 168 VRKRLEVY----HKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGKL 215
>gnl|CDD|131152 TIGR02097, yccV, hemimethylated DNA binding domain. This model
describes the small protein from E. coli YccV and its
homologs in other Proteobacteria. YccV is now described
as a hemimethylated DNA binding protein. The model also
describes a domain in longer eukaryotic proteins.
Length = 101
Score = 29.3 bits (66), Expect = 1.9
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 572 NHQPLIAYLTQFGILKKRKPEHIE-PQVKDALDSIRK 607
P +AY+ + +L E IE PQV + D +
Sbjct: 59 EGLPYVAYVAEQNLLYDDSDEPIEHPQVDELFDGFDE 95
>gnl|CDD|130559 TIGR01495, ETRAMP, Plasmodium ring stage membrane protein ETRAMP.
This model describes a family of proteins from the
malaria parasite Plasmodium falciparum, several of which
have been shown to be expressed specifically in the ring
stage as well as the rident parasite Plasmodium yoelii.
A homolog from Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich stretch long enough to
span the membrane, a highly charged region rich in Lys,
a second putative transmembrane region, and a second
highly charged, low complexity sequence region. Some
members have up to 100 residues of additional C-terminal
sequence. These genes have been shown to be found in the
sub-telomeric regions of both P. falciparum and P.
yoelii chromosomes.
Length = 85
Score = 28.5 bits (64), Expect = 3.1
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 242 KIAFYFQLFLQLTIIATGNFNWYNLLTIALCLSLLDDSYFYPDLNRKKNKLLSILSSMVS 301
KI ++F L + IA G N + L L +KKNK + + SS+ S
Sbjct: 5 KILYFFAALLAINFIAPGYCNNGKKVNKKGNLKKLT-----KAEKKKKNKKIILYSSIAS 59
Query: 302 LV--MFGATV-FAFY 313
+ + GA V +Y
Sbjct: 60 GLALLVGAGVGLGYY 74
>gnl|CDD|212054 cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized
nucleobase-cation-symport-1 (NCS1) transporter
subfamily, YbbW-like; solute-binding domain. NCS1s are
essential components of salvage pathways for nucleobases
and related metabolites; their known substrates include
allantoin, uracil, thiamine, and nicotinamide riboside.
This subfamily includes the putative allantoin
transporter Escherichia coli YbbW (also known as GlxB2).
NCS1s belong to a superfamily which also contains the
solute carrier 5 family sodium/glucose transporters
(SLC5s), and solute carrier 6 family neurotransmitter
transporters (SLC6s).
Length = 459
Score = 30.2 bits (69), Expect = 4.3
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 333 FSKSQYDDYLGQ--GLILA-LYLGLASFIVTATT------ALWDTMRTPSKL-GKLNSLV 382
F+KSQ LGQ GL + VT+ T A+WD P L + ++ V
Sbjct: 240 FAKSQRAQVLGQAIGLPITMALFAFVGVAVTSATVVIFGEAIWD----PVDLLSRFDNPV 295
Query: 383 VTSFYIVTSLLIFSINTVPLANLHPAVN 410
++ +++ +++T ANL
Sbjct: 296 AVIIALLA-IILATLSTNVAANLVSPAY 322
>gnl|CDD|183617 PRK12600, PRK12600, putative monovalent cation/H+ antiporter
subunit F; Reviewed.
Length = 94
Score = 28.0 bits (63), Expect = 4.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 66 IGLSTEYMMDVISLVGIFLAFTG-FVSQKF 94
I L T+ ++VI L+GI LAF G KF
Sbjct: 53 ILLDTKAYLEVILLIGI-LAFIGTAAFSKF 81
>gnl|CDD|214459 MTH00211, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 597
Score = 29.9 bits (68), Expect = 5.0
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 219 TAFSLATELLLPPLFLLP------LKGAKKIAFYFQLFLQLTIIATG------NFNWYNL 266
+ F L LLL PL L +K A K++F+ L L + G N++W NL
Sbjct: 7 SGFLLILILLLLPLLLPLNNSKLHIKKAVKLSFFISLIPLLIFLDQGLETILTNWSWINL 66
Query: 267 LTIALCLSLLDDSY 280
+L LS D Y
Sbjct: 67 GLFSLNLSFKFDFY 80
>gnl|CDD|129521 TIGR00427, TIGR00427, membrane protein, MarC family. MarC is a
protein that spans the plasma membrane multiple times
and once was thought to be a multiple antibiotic
resistance protein. The function for this family is
unknown [Unknown function, General].
Length = 201
Score = 29.3 bits (66), Expect = 5.1
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 245 FYFQLFLQLTIIATGNFNWYNLLTIALCLSLLDDSYFYPDLNRKKNKLLSILSSMVSLVM 304
FYF+ F+ L I N + I + L+ +Y R K + +SS + L++
Sbjct: 6 FYFKFFISLFAII----NPIGNIPIFISLT-----EYYTAAERNKIAKKANISSFIILLI 56
Query: 305 FGATVFAFYKLFGIKVDQKNFTVQSQITFSKSQYDDYLGQG 345
F KLFGI +D F + I D G+G
Sbjct: 57 FLVFGDTILKLFGISID--AFRIAGGILLFTIAMDMLSGEG 95
>gnl|CDD|213343 cd05395, RasGAP_RASA4, Ras-GTPase Activating Domain of RASA4. Ras
GTPase activating-like 4 protein (RASAL4), also known as
Ca2+ -promoted Ras inactivator (CAPRI), is a member of
the GAP1 family. Members of the GAP1 family are
characterized by a conserved domain structure comprising
N-terminal tandem C2 domains, a highly conserved central
RasGAP domain, and a C-terminal pleckstrin-homology
domain that is associated with a Bruton's tyrosine
kinase motif. RASAL4, like RASAL, is a cytosolic protein
that undergoes a rapid translocation to the plasma
membrane in response to a receptor-mediated elevation in
the concentration of intracellular free Ca2+ ([Ca2+]i).
However, unlike RASAL, RASAL4 does not sense
oscillations in [Ca2+]i.
Length = 287
Score = 29.1 bits (65), Expect = 6.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 535 AFLRAVSYKYVYTPANTKATQWWIRKREEEYFPEFEANHQPLIAYLTQFGILKKRKPEHI 594
L A+S Y PA +AT + KR +E FPE + + IA +T F L+ P +
Sbjct: 159 ELLSAISKSVKYCPAVIRATFRQLFKRVQERFPENQHQNVKFIA-VTSFLCLRFFSPAIM 217
Query: 595 EPQV 598
P++
Sbjct: 218 SPKL 221
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 29.3 bits (66), Expect = 7.1
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 266 LLTIALCLSLLDDSYFYPDLNRKKNKLLSILSSMVSLVMFGATVFAFYKLFGIKVDQKNF 325
L + + L ++ Y+ L R +L+SIL +SL++ A FYK +
Sbjct: 129 LPALLIVLVII--RYYRVWLRRLWARLVSIL---LSLLVILAFAAPFYKNYASIFRNNGD 183
Query: 326 TVQSQITFSK 335
++ + +
Sbjct: 184 SLAKRYRPAN 193
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.
Length = 569
Score = 29.0 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 15 VFAFASLYIQIPGLFGDNGILPARSQLEG 43
V FA +Y Q G+ G+NGIL S L+G
Sbjct: 362 VTGFARIYGQPVGIIGNNGILFTESALKG 390
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.437
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,174,138
Number of extensions: 3425016
Number of successful extensions: 4256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4236
Number of HSP's successfully gapped: 80
Length of query: 661
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 558
Effective length of database: 6,369,140
Effective search space: 3553980120
Effective search space used: 3553980120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)