RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10895
(661 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 7e-11
Identities = 98/595 (16%), Positives = 167/595 (28%), Gaps = 227/595 (38%)
Query: 46 SLPLSKKLHRKPTLLWLAPFIGL----STEYMMD-----VISLVGIFLAFTGFVSQKFCC 96
L + + L F + + + D LVG FL G+VS
Sbjct: 19 VLLVPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFL---GYVSSL--V 72
Query: 97 KPNFFALWSLYYSLFQVGQTFMSFQWDTLLL------ETGFLC---I--IVSPFGINKDS 145
+P+ +VGQ D +L E +L I + + D
Sbjct: 73 EPS------------KVGQF------DQVLNLCLTEFENCYLEGNDIHALAAKLLQEND- 113
Query: 146 SRKGSSPSDQVKFWLVRWLLFRLIVTSPINKLSSGDPSWWTLKALGIHFQSM-------- 197
+ + K + ++ R++ P +K S S AL F+++
Sbjct: 114 -----TTLVKTKELIKNYITARIMAKRPFDKKS---NS-----AL---FRAVGEGNAQLV 157
Query: 198 ------GLPTPLAWYSHHLPAWF--LR---------LTTAFSLATELLLPPLFLLPLKGA 240
G +F LR + + E L ++
Sbjct: 158 AIFGGQGNTD----------DYFEELRDLYQTYHVLVGDLIKFSAETLSE-----LIRTT 202
Query: 241 KKIAFYFQLFLQLTIIATGNFNWYNLLTIALCLSLLDDSYFYPDLNRKKNKLLSILSSMV 300
F L + W L++ PD K+ LLSI +
Sbjct: 203 LDAEKVFTQGLNI-------LEW------------LENPSNTPD----KDYLLSIP---I 236
Query: 301 SLVMFGATVFAFY----KLFGIKVDQKNFTVQSQITFSKSQYDDYLGQGLILALYLGLAS 356
S + G A Y KL G + ++ QGL+ A+
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG---------HSQGLVTAV------ 281
Query: 357 FIVTATTALWDTMRTPSKLGKLNSLVVTSFYI-VTSLLIFSINTVPLANLHPAV---NKT 412
I + W++ + + F+I V + ++P + L ++
Sbjct: 282 AIAETDS--WESFFVSVR-----KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 413 LHPM--VKSW-HGQL--------------AHLHIS--N----------PYALFRVMTGVD 443
PM + + Q+ + IS N P +L+ + +
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL- 393
Query: 444 GRPEVIIEGA-QNRQGPWTEIPF--RYKPGNVNRTLPFVAP-HQPRL------------- 486
R G Q+R IPF R K NR LP +P H L
Sbjct: 394 -RKAKAPSGLDQSR------IPFSER-KLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 487 -DWQMWFAALGT--YHQNPWI------SSLAYRI---LTHQP---EVLSLLDSTH 526
+ + Y S++ RI + P E + +TH
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 38.9 bits (90), Expect = 0.006
Identities = 48/245 (19%), Positives = 80/245 (32%), Gaps = 68/245 (27%)
Query: 412 TLHPMVKSWHGQLAHLHISNPYALFRVMTG-----VDGRPEVIIEGAQNRQGPWTEIPFR 466
+ P+ S HG L H + P A F + + PE A + + P T
Sbjct: 5 STRPLTLS-HGSLEH-VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE-PTTPAEL- 60
Query: 467 YKPGNVNRTLPFVA----PHQPRLDWQMWFAALGTYHQ-----NPWISSLAYRILTHQPE 517
V + L +V+ P + Q+ L + N I +LA ++L
Sbjct: 61 -----VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHALAAKLLQENDT 114
Query: 518 VLSLLDS--THYPFKAKA-----------PAFLRAVSYKYVYTPA------NTKATQWWI 558
L +Y A+ A RAV A NT
Sbjct: 115 TLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT------- 166
Query: 559 RKREEEYFPE----FEANHQPLIAYLTQFGILKKRKPEHIEPQVKDALDSIRKYTATADP 614
++YF E ++ + L+ L +F E + ++ LD+ + +T +
Sbjct: 167 ----DDYFEELRDLYQT-YHVLVGDLIKFSA------ETLSELIRTTLDAEKVFTQGLN- 214
Query: 615 AILLW 619
IL W
Sbjct: 215 -ILEW 218
Score = 33.5 bits (76), Expect = 0.32
Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 55/177 (31%)
Query: 510 RILTHQPEVL--SLLD-STHYPFKAKAPAF----LRAVSYKYVYTPANTKATQWWIRKRE 562
R H + S+LD + P F + + Y A T + +
Sbjct: 1648 RADNHFKDTYGFSILDIVINNP-VNLTIHFGGEKGKRIRENY---SAMIFETIVDGKLKT 1703
Query: 563 EEYFPE---------FE---------ANHQPLIAYLT----QFGILKKR--KPE------ 592
E+ F E F QP A F LK + P
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQP--ALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 593 HIEPQVKDALDSIRKYTATADPAILLWSFFITGLAIIYLRGGPKHTASAKESHGKSK 649
H S+ +Y A A A ++ + + +++ RG A ++ G+S
Sbjct: 1762 H----------SLGEYAALASLADVM--SIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 3e-09
Identities = 60/401 (14%), Positives = 118/401 (29%), Gaps = 97/401 (24%)
Query: 275 LLDDSYFYPDLNRK--KNKLLSILSSMV--SLVMFGATVFAFYKLFGIKVDQKNFTVQSQ 330
D F + + K ++ SILS ++M V +LF + ++ VQ
Sbjct: 25 FEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK- 81
Query: 331 ITFSKSQYD-DYLGQGLILALYLGLASFIVTATTALWDTMRTPSKLGKL---------NS 380
F + +Y F+++ + R PS + ++ N
Sbjct: 82 --FVEEVLRINY--------------KFLMSP---IKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 381 LVVTSFYIVTSL-LIFSINTVPLANLHPAVNKTLHPMV---KSWHGQLA-------HLHI 429
V + Y V+ L + L L PA N + ++ K+W +A +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQC 178
Query: 430 SNPYALFRVMTGVDGRPEVIIEGAQNRQGPWTEIPFRYKPGNVNRTLPFVAPHQPRLDWQ 489
+ +F + PE ++E Q + ++ P +R+ Q
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 490 MWFAALGTYHQNP---------WISSL--AY----RIL--THQPEVLSLLDSTHYPFKAK 532
L + A+ +IL T +V L +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT----- 286
Query: 533 APAFLRAVSYKYVYTPANTK---ATQWWIRKREEEYFPEFEANHQPLIAYLTQFGILKKR 589
+ + TP K ++ R ++ P P L+ +
Sbjct: 287 --THISLDHHSMTLTPDEVKSLLLK--YLDCRPQD-LPREVLTTNPRR--LSIIAESIRD 339
Query: 590 KPEHIE--PQVK-DALDSIRKYTATA-DPAI---LLWSFFI 623
+ V D L +I + + +PA + +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Score = 30.6 bits (68), Expect = 2.3
Identities = 52/390 (13%), Positives = 108/390 (27%), Gaps = 156/390 (40%)
Query: 272 CLSLLDD-------SYFYPDLN-------RKKN-------------------------KL 292
CL +L + + F +L+ R K ++
Sbjct: 246 CLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 293 LSILSSMVS-----------------LVMFGATV------FAFYKLFGIKVDQKNFTVQS 329
S+L + L + ++ + +K + D+ ++S
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--VNCDKLTTIIES 361
Query: 330 QITFSKSQYDDYLGQGLILALYLGLASF-----IVTAT-TALWDTMRTPSKLGKLNSLVV 383
+ + L ++ L+ F I T + +W + +
Sbjct: 362 SL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF-----------DVIKS 402
Query: 384 TSFYIVTSLLIFSINTVPLANLHPAVNKTLHPMVKSWHG--QLAHLHISNPYALFRVMTG 441
+V L +S L P S + + N YAL R
Sbjct: 403 DVMVVVNKLHKYS-----LVEKQP------KESTISIPSIYLELKVKLENEYALHR---- 447
Query: 442 VDGRPEVIIEGAQNRQGPWTEIPFRYKPGNVNRTLPFVAPHQPRLDWQMWFAALGTYHQN 501
I++ Y N+ +T P LD Q +++ +G +H
Sbjct: 448 ------SIVD--------------HY---NIPKTFDSDDLIPPYLD-QYFYSHIG-HH-- 480
Query: 502 PWISSLAYRILTHQPEVLS--LLDSTHYPF-KAKAPAFLRAVSYKYVYTPANTKATQWWI 558
L + + LD + F + K +R S + + T +
Sbjct: 481 -----LKNIEHPERMTLFRMVFLD---FRFLEQK----IRHDSTAW-NASGSILNTLQQL 527
Query: 559 RKREEEYF----PEFEANHQPLIAYLTQFG 584
+ + Y P++E ++ +L +
Sbjct: 528 KFY-KPYICDNDPKYERLVNAILDFLPKIE 556
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 34.1 bits (79), Expect = 0.084
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSIR 606
++ R + QPL+ + +Q G+LK + + + + D L +R
Sbjct: 168 VKNRLDVN----MKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGLR 216
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 33.3 bits (77), Expect = 0.14
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSI 605
I+KR E Y +P+IA+ + GI++K + + QV LD++
Sbjct: 147 IKKRLETY----YKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 33.3 bits (77), Expect = 0.16
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSIR 606
+ KR E PL+ + + G L + + + +K L ++
Sbjct: 168 VTKRLEVN----MKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGLK 216
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 32.9 bits (76), Expect = 0.18
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSI 605
I KR E Y P+IAY L K PE + Q+ A+DSI
Sbjct: 150 IAKRLEAY----YRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.45
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 11/35 (31%)
Query: 595 EPQ-VKDALDSIRKYTATADPAILLWSFFITGLAI 628
E Q +K S++ Y + PA LAI
Sbjct: 18 EKQALKKLQASLKLYADDSAPA----------LAI 42
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 31.0 bits (71), Expect = 0.88
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSI 605
++ R E Y PL+ Y ++ GI + P+ + + A
Sbjct: 184 LKIRLEAY----HTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 30.7 bits (70), Expect = 1.1
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALD 603
++KR + ++ PLI+Y +L + +E ++ +D
Sbjct: 197 LKKRLTVF----KSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 30.2 bits (69), Expect = 1.3
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALD 603
I+KR E Y PLI Y + GIL+ + E + QV + +
Sbjct: 158 IKKRLEVY----REQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203
>3bjx_A Halocarboxylic acid dehalogenase DEHI; plasmid, hydrolase; 2.30A
{Pseudomonas putida}
Length = 311
Score = 30.2 bits (67), Expect = 1.8
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 452 GAQNRQGPWTEIPFRYKPGNVNRTLPFVAPHQPRLDWQMWFAALGTYHQNPWISSLAYRI 511
G + P ++ LP V + + Q + H + +S ++
Sbjct: 149 GGAEVSSELRASIPKGHPKGMDPLLPLVDATKASTEVQGLLKRVADLHYHHGPASD-FQA 207
Query: 512 LTHQPEVLSLLDSTHYPFKAKAPAFLRAVS 541
L + P+VL ++ A+ +
Sbjct: 208 LANWPKVLQIVTDEVLAPVARTEQYDAKSR 237
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 29.9 bits (68), Expect = 2.1
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK---RKPEHIEPQVKDALDS 604
+ KR + Y E +P++ Y + G+L+ + I P V L +
Sbjct: 169 VIKRLKAY----EDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQT 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 29.5 bits (67), Expect = 2.7
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK---RKPEHIEPQVKDALDS 604
+ R +Y + +P+I G+L + + I P V +
Sbjct: 189 VAARLRQY----KDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLFSN 234
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 29.4 bits (67), Expect = 2.9
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALD 603
++KR Y A +P++ + + GI + P + + + L
Sbjct: 173 LKKRLAAY----HAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 29.0 bits (66), Expect = 3.3
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDAL 602
++ R + + PL+ + GILK+ P+ + Q+K L
Sbjct: 173 VKVRLDVF----HKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217
>3hag_A Capsid protein; jelly-roll beta sheets, beta barrel, icosahedral
virus; 3.50A {Hepatitis e virus type 4} PDB: 2zzq_A
2ztn_A
Length = 504
Score = 28.7 bits (63), Expect = 6.4
Identities = 18/132 (13%), Positives = 36/132 (27%)
Query: 443 DGRPEVIIEGAQNRQGPWTEIPFRYKPGNVNRTLPFVAPHQPRLDWQMWFAALGTYHQNP 502
+ R + Q+ Q T P +P +V R + ++ T
Sbjct: 325 ESRVVIQDYDNQHEQDRPTPSPAPSRPFSVLRANDVLWLSLTAAEYDQTTYGSSTNPMYV 384
Query: 503 WISSLAYRILTHQPEVLSLLDSTHYPFKAKAPAFLRAVSYKYVYTPANTKATQWWIRKRE 562
+ + T V LD + + ++ S + P K + W +
Sbjct: 385 SDTVTFVNVATGAQGVSRSLDWSKVTLDGRPLTTIQQYSKTFFVLPLRGKLSFWEAGTTK 444
Query: 563 EEYFPEFEANHQ 574
Y +
Sbjct: 445 AGYPYNYNTTAS 456
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA
binding protein, argonaute, miRNA, siRNA; 3.65A
{Neurospora crassa}
Length = 437
Score = 28.6 bits (63), Expect = 7.2
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
Query: 502 PWISSLAYRILTHQPEVLSLLDSTHYPFKAKAPAFLRAVSYKYVYTPANTKATQWWIR-- 559
+L ++ D TH A + A S + + + QW
Sbjct: 142 NHNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVW 201
Query: 560 ---KREEEYFPEFEANHQPLIAYLTQFGILKKRKPEHI 594
+E +F + + + PE+I
Sbjct: 202 NNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENI 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.437
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,974,331
Number of extensions: 593306
Number of successful extensions: 1208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 33
Length of query: 661
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 561
Effective length of database: 3,909,693
Effective search space: 2193337773
Effective search space used: 2193337773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.0 bits)