RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10895
         (661 letters)



>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 182

 Score = 35.7 bits (81), Expect = 0.008
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSIRK 607
           +  R E          +PL+ +  Q G L+     +  E +   +++ L  + +
Sbjct: 133 VANRLEVN----MKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLAR 182


>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 194

 Score = 34.9 bits (79), Expect = 0.017
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSIR 606
           I+KR E Y        +P+IA+  + GI++K       + +  QV   LD+++
Sbjct: 146 IKKRLETY----YKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDTLK 194


>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630
           {Staphylococcus epidermidis [TaxId: 1282]}
          Length = 88

 Score = 29.4 bits (66), Expect = 0.30
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 590 KPEHIEPQVKDALDSIRKYTATADPAILLWSFFITGLAIIYLRGGPKHTASA 641
            P   + QV + ++ +R +         L      G+  + L G      S+
Sbjct: 5   NPTMFD-QVAEVIERLRPFLLRDGGDCTLVD-VEDGIVKLQLHGACGTCPSS 54


>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
           globisporus [TaxId: 1459]}
          Length = 182

 Score = 30.2 bits (67), Expect = 0.52
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 8/54 (14%)

Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALDSIRK 607
           +  R E           PL+A+     +L      +  + +   +   L    +
Sbjct: 133 VTNRLEVN----MNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQGNGQ 182


>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
           taurus), mitochondrial izozyme-2 [TaxId: 9913]}
          Length = 190

 Score = 28.8 bits (63), Expect = 1.6
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 8/50 (16%)

Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK----RKPEHIEPQVKDALD 603
           ++ R E Y         PL+ Y ++ GI       + P+ +   +  A  
Sbjct: 141 LKIRLEAY----HTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 186


>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
           taurus), mitochondrial izozyme-3 [TaxId: 9913]}
          Length = 189

 Score = 28.6 bits (63), Expect = 1.7
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 558 IRKREEEYFPEFEANHQPLIAYLTQFGILKK---RKPEHIEPQVKDALDS 604
           + KR + Y    EA  +P++ Y  + G+L+     +   I P V   L +
Sbjct: 131 VVKRLKAY----EAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQT 176


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,459,567
Number of extensions: 115950
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 13
Length of query: 661
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 570
Effective length of database: 1,158,166
Effective search space: 660154620
Effective search space used: 660154620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)