BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10896
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|C Chain C, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 424
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 157/268 (58%), Gaps = 4/268 (1%)
Query: 35 EALHIAHLMASHGYLFPIEE-HVLTVKNDNTFYRFQTPYFWPSNCWEPENTDYAVYLCKR 93
EA ++ + + +GY++P+++ L +K D++ YRFQTPYFWP+ W E+TDYA+YL KR
Sbjct: 71 EAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPAEDTDYAIYLAKR 130
Query: 94 TMQNKTRLELADYEAENLALLQKMFSRKWEFIFMQAEAQSKVDKKRDKLERKVLDSQERA 153
++ K LE +YE EN L K + KW+F+ MQA+ Q + K+R+K +R LD QE+A
Sbjct: 131 NIKKKGILE--EYEKENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKA 188
Query: 154 FWDVHRPMPGCINTTEVDMKKVDXXXXXXXXXXXXXXXDLSSTCVSHLEAIKKEITSLKI 213
+W VHR PG N + + +V ++ + + + K SL
Sbjct: 189 YWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTAVRKEIMYYQQALMRSTVKSSVSLGG 248
Query: 214 YINYYEQYCEYDPFFTPTELANPWLTDNPEFWDEEKQAKEISAR-RIKRWAFSLQELLKD 272
+ Y EQ+ D + +NPW+TD+ +FWD + EI + R++RWAF+ EL++D
Sbjct: 249 IVKYSEQFSSNDAIMSGCLPSNPWITDDTQFWDLNAKLVEIPTKMRVERWAFNFSELIRD 308
Query: 273 PLGRDHFTKFLDKEFSGENLKFWEAVQE 300
P GR F FL KEFSGENL FWEA ++
Sbjct: 309 PKGRQSFQYFLKKEFSGENLGFWEACED 336
>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
pdb|2A72|B Chain B, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
Length = 146
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 252 KEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQE 300
KE S +R+KRW F + E LKDP+GR+ F KFL+ EFS ENL+FW AV++
Sbjct: 3 KEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVED 51
>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs6
Length = 148
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQE 300
S +R+KRW FS E+LKD +GRD F +FL+ EFS ENL+FW AVQ+
Sbjct: 4 SQQRVKRWGFSFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQD 49
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 243 EFWDEEKQAKEISAR-RIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQE 300
+FWD + +I + R++RWAF+ EL++DP GR F FL KEFSGENL FWEA ++
Sbjct: 1 QFWDLNAKLVDIPTKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACED 59
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 243 EFWDEEKQAKEISAR-RIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQE 300
+FWD + +I + R++RWAF+ EL++DP GR F FL KEFSGENL FWEA ++
Sbjct: 1 QFWDLNAKLVDIPTKXRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACED 59
>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signaling 7
Length = 139
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 257 RRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQE 300
+R+KRW F + E LKDP+GR+ F KFL+ EFS ENL+FW AV++
Sbjct: 10 QRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVED 53
>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14
Length = 154
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 259 IKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+ WA S + LL+DPLG +FT+FL KEFS EN+ FW+A + +
Sbjct: 8 VASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERF 50
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human Regulator
Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 257 RRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302
RR+ WA S + LL+DP+G +F+ FL KEFS EN+ FW+A + +
Sbjct: 10 RRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFN 55
>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human)
pdb|2BV1|B Chain B, Regulator Of G-Protein Signalling 1 (Human)
pdb|2GTP|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 145
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 254 ISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+SA + +W+ SL++LL + G++ F FL EFS EN++FW A ++Y
Sbjct: 14 LSAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDY 61
>pdb|2I59|A Chain A, Solution Structure Of Rgs10
Length = 138
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
S + +WA SL+ LL+DP G F +FL KEFS EN+ FW A +++
Sbjct: 4 SLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDF 50
>pdb|2IHB|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 153
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 261 RWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+WA SL+ LL+DP G F +FL KEFS EN+ FW A +++
Sbjct: 30 KWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDF 70
>pdb|2DLR|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 10
Length = 149
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 261 RWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+WA SL+ LL+DP G F +FL KEFS EN+ FW A +++
Sbjct: 14 KWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDF 54
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+ +S +K+WA SL+ L+ G F FL E+S EN+ FW + +EY
Sbjct: 48 CQRVSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEY 98
>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
pdb|1EZY|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
Length = 166
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 254 ISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+S +K+WA SL+ L+ G F FL E+S EN+ FW + +EY
Sbjct: 5 VSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEY 52
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 259 IKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQE 300
++ WA S +L+ P GR F FL E+S EN+ FW A +E
Sbjct: 17 VQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEE 58
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein
Signaling 8, Rgs8
Length = 155
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 252 KEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
K +S RWA S LL G F FL EFS ENL+FW A +E+
Sbjct: 25 KRLSTEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEF 74
>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
Length = 141
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 252 KEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
K +S RWA S LL G F FL EFS ENL+FW A +E+
Sbjct: 4 KRLSTEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEF 53
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17
(Rgsz2)
Length = 158
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 250 QAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQE 300
Q+ +A + W+ + +++K P GR+ F +FL E+S ENL FW A ++
Sbjct: 21 QSMNPTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACED 71
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signalling 5 (Rgs 5)
Length = 150
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 261 RWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+W SL +LL++ G F FL EFS ENL+FW A ++Y
Sbjct: 24 QWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDY 64
>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
pdb|2OWI|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
Length = 151
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 254 ISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+S +W S +LL G + FT+FL EFS EN++FW A +++
Sbjct: 3 VSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDF 50
>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 18
Length = 140
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 261 RWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+W S +LL G + FT+FL EFS EN++FW A +++
Sbjct: 14 KWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDF 54
>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain
Length = 127
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 261 RWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+W SL++LL G F FL EFS ENL+FW A +++
Sbjct: 6 KWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDF 46
>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 142
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 262 WAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
W+ + ELL G F FL EFS EN++FW A +++
Sbjct: 13 WSEAFDELLASKYGLAAFRAFLKSEFSEENIEFWLACEDF 52
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 250 QAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
Q+ + S + W+ + ELL G F FL EF EN++FW A +++
Sbjct: 11 QSMKPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDF 62
>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 140
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 262 WAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
W S LL G F FL EFS ENL+FW A +E+
Sbjct: 12 WRESFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEF 51
>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|B Chain B, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|C Chain C, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|D Chain D, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|E Chain E, Structure Of The Regulator Of G-Protein Signaling 16
Length = 161
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 262 WAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
W S LL G F FL EFS ENL+FW A +E+
Sbjct: 33 WRESFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEF 72
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 262 WAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
W+ + ELL G F FL EF EN++FW A +++
Sbjct: 14 WSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDF 53
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|D Chain D, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 129
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 262 WAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
W S LL G F FL EFS ENL+FW A +E+
Sbjct: 10 WRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEF 49
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7L|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 137
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 262 WAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
W S LL G F FL EFS ENL+FW A +E+
Sbjct: 18 WRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEF 57
>pdb|1EMU|A Chain A, Structure Of The Axin Rgs-Homologous Domain In Complex
With A Samp Repeat From Apc
Length = 132
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 261 RWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+WA SL LL D G F FL +E + L FW A +
Sbjct: 5 KWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGF 45
>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
Length = 147
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 261 RWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+WA SL LL D G F FL +E + L FW A +
Sbjct: 11 KWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGF 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,815,577
Number of Sequences: 62578
Number of extensions: 341978
Number of successful extensions: 719
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 33
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)