Query psy10896
Match_columns 302
No_of_seqs 201 out of 399
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 21:12:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3589|consensus 99.7 8.9E-18 1.9E-22 151.5 7.4 89 212-302 29-117 (221)
2 cd04450 DEP_RGS7-like DEP (Dis 99.6 3.3E-16 7.2E-21 124.0 4.5 58 15-74 31-88 (88)
3 smart00224 GGL G protein gamma 99.2 9.1E-12 2E-16 94.0 5.0 46 202-247 2-63 (63)
4 cd04439 DEP_1_P-Rex DEP (Dishe 99.2 1.2E-11 2.7E-16 97.6 3.9 52 14-68 30-81 (81)
5 smart00049 DEP Domain found in 99.1 1.1E-10 2.3E-15 88.7 4.3 55 14-70 22-77 (77)
6 cd00068 GGL G protein gamma su 99.0 3.8E-10 8.1E-15 83.7 4.9 28 214-241 29-57 (57)
7 cd04445 DEP_PLEK1 DEP (Disheve 99.0 3.4E-10 7.4E-15 92.7 4.1 53 14-68 33-95 (99)
8 PF00610 DEP: Domain found in 99.0 4.7E-10 1E-14 84.6 4.0 53 14-68 19-74 (74)
9 cd04443 DEP_GPR155 DEP (Dishev 98.8 2.6E-09 5.6E-14 84.8 3.8 52 14-68 32-83 (83)
10 cd04438 DEP_dishevelled DEP (D 98.7 1.3E-08 2.8E-13 81.0 4.4 50 14-68 31-82 (84)
11 cd04448 DEP_PIKfyve DEP (Dishe 98.6 5.1E-08 1.1E-12 76.9 4.3 51 14-67 30-80 (81)
12 PF00631 G-gamma: GGL domain; 98.5 5.5E-08 1.2E-12 73.8 1.5 46 200-247 3-68 (68)
13 cd04449 DEP_DEPDC5-like DEP (D 98.4 2E-07 4.4E-12 73.4 4.1 52 14-68 31-83 (83)
14 cd04371 DEP DEP domain, named 98.4 4.1E-07 9E-12 69.1 4.3 52 14-67 30-81 (81)
15 cd04442 DEP_1_DEP6 DEP (Dishev 98.1 3.3E-06 7.3E-11 67.1 4.3 53 14-68 30-82 (82)
16 cd04441 DEP_2_DEP6 DEP (Dishev 98.0 9.2E-06 2E-10 65.1 4.4 52 14-68 34-85 (85)
17 cd04437 DEP_Epac DEP (Dishevel 97.7 5.3E-05 1.2E-09 64.7 4.5 59 14-75 32-91 (125)
18 cd04440 DEP_2_P-Rex DEP (Dishe 97.6 6.9E-05 1.5E-09 61.2 4.3 53 14-69 39-91 (93)
19 cd04444 DEP_PLEK2 DEP (Disheve 97.3 0.00013 2.9E-09 61.1 2.5 54 14-69 33-97 (109)
20 cd04446 DEP_DEPDC4 DEP (Dishev 96.5 0.0029 6.3E-08 51.9 3.7 54 14-67 29-95 (95)
21 cd04447 DEP_BRCC3 DEP (Disheve 96.3 0.0035 7.5E-08 51.4 3.2 52 14-68 31-92 (92)
22 KOG4119|consensus 96.1 0.0096 2.1E-07 46.7 4.4 42 198-239 13-63 (71)
23 cd04436 DEP_fRgd2 DEP (Disheve 94.2 0.034 7.4E-07 44.9 2.3 34 14-49 31-64 (84)
24 KOG3571|consensus 81.6 1.1 2.3E-05 46.9 2.6 36 14-51 424-460 (626)
25 KOG3590|consensus 79.1 1.6 3.6E-05 44.9 3.0 43 260-302 109-151 (602)
26 PF08784 RPA_C: Replication pr 64.9 9.3 0.0002 30.4 3.7 33 16-51 65-97 (102)
27 PF13308 YARHG: YARHG domain 62.5 6 0.00013 31.1 2.2 53 35-117 24-79 (81)
28 KOG3590|consensus 58.2 4.4 9.4E-05 41.9 0.9 39 264-302 316-354 (602)
29 PF03942 DTW: DTW domain; Int 37.8 14 0.00029 33.1 0.6 55 118-176 120-175 (203)
30 smart00400 ZnF_CHCC zinc finge 36.8 27 0.00058 25.1 1.9 24 13-39 30-53 (55)
31 PF05542 DUF760: Protein of un 36.7 21 0.00046 28.4 1.5 50 1-51 10-73 (86)
32 PF13592 HTH_33: Winged helix- 33.1 31 0.00067 25.3 1.8 33 15-51 7-39 (60)
33 smart00182 CULLIN Cullin. 28.5 70 0.0015 26.8 3.4 34 85-120 11-44 (142)
34 PF12568 DUF3749: Acetyltransf 28.0 25 0.00053 30.6 0.6 38 7-48 83-120 (128)
35 PF12076 Wax2_C: WAX2 C-termin 24.3 42 0.0009 30.5 1.4 26 87-118 15-40 (164)
36 KOG4578|consensus 24.3 57 0.0012 33.1 2.4 45 5-51 54-100 (421)
37 PF07438 DUF1514: Protein of u 23.5 72 0.0016 25.0 2.3 30 88-118 35-64 (66)
38 PF12923 RRP7: Ribosomal RNA-p 23.5 40 0.00087 28.7 1.1 11 109-119 103-113 (131)
39 PF09868 DUF2095: Uncharacteri 21.4 78 0.0017 27.6 2.4 28 17-47 82-109 (128)
No 1
>KOG3589|consensus
Probab=99.72 E-value=8.9e-18 Score=151.46 Aligned_cols=89 Identities=27% Similarity=0.393 Sum_probs=82.4
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCCCCCCCccccccccccCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchh
Q psy10896 212 KIYINYYEQYCEYDPFFTPTELANPWLTDNPEFWDEEKQAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGEN 291 (302)
Q Consensus 212 ~~li~y~eqy~~~Dp~Ls~~~psNPWisDd~~~W~~n~~~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeEN 291 (302)
...+.+..++..+|++.+.+ .|||+.+....|....+++.|+.++|.+|+.||++||+|+.|+..|..||++|||+||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~w~~sf~~L~~~~~G~~~F~~fLk~e~Seen 106 (221)
T KOG3589|consen 29 ITRESTLTRLARNDRRISNP--GAPSTLKSLASGKGLEPLELPSREEVESWAKSFEKLLADEAGRAVFAEFLKSEFSEEN 106 (221)
T ss_pred HHhHHHhhccccccccccCC--CCCCCCCchhhhcccccccCCCHHHHHHHHHhHHHHhhChhhHHHHHHHHHHHhhHhH
Confidence 33788888999999998877 9999999999997776677999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccC
Q psy10896 292 LKFWEAVQEYT 302 (302)
Q Consensus 292 L~FWlAcE~~K 302 (302)
|+||+|||+||
T Consensus 107 i~FW~ace~~k 117 (221)
T KOG3589|consen 107 LEFWLACEEFK 117 (221)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 2
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=99.62 E-value=3.3e-16 Score=124.02 Aligned_cols=58 Identities=38% Similarity=0.634 Sum_probs=54.6
Q ss_pred cCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCcccccCCCcccccccCccc
Q psy10896 15 CPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRFQTPYFW 74 (302)
Q Consensus 15 ~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRFQtPYfW 74 (302)
|-|+|+|||++..+.+ .+||+++|++|+.+|||+||.+|...++|++++||||+||||
T Consensus 31 G~~~v~WL~~~~~~~~--~~EA~~~~~~ll~~gli~~V~~~~~~~~~~~~~yr~~~~Y~~ 88 (88)
T cd04450 31 GKAIVQWLMDCTDVVD--PSEALEIAALFVKYGLITPVSDHRSLLKPDETLYRFQAPYFW 88 (88)
T ss_pred hHHHHHHHHHCCCCCC--HHHHHHHHHHHHHCCCEEEecCCcccccCCCceEeccccccC
Confidence 6789999999999877 799999999999999999999996669999999999999998
No 3
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=99.24 E-value=9.1e-12 Score=94.02 Aligned_cols=46 Identities=30% Similarity=0.608 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHH---------------HHHHhhhhccCCCCCCCCCCC-CCCCCCCcccccc
Q psy10896 202 EAIKKEITSLKI---------------YINYYEQYCEYDPFFTPTELA-NPWLTDNPEFWDE 247 (302)
Q Consensus 202 ~~~~~ei~~~~~---------------li~y~eqy~~~Dp~Ls~~~ps-NPWisDd~~~W~~ 247 (302)
+.++++|+.|+. |++||+|+..+|||++|+.|+ |||++|+.++|.+
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~~~~~DP~l~g~~~~~NP~~~dk~~c~~l 63 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAEEDPLLTGPPPSKNPFIEDKTSCWIL 63 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHcCCCCCCCcCCCCCCCCCCCCCCCCcCcC
Confidence 456666666665 999999999999999999998 9999999999974
No 4
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=99.20 E-value=1.2e-11 Score=97.56 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=48.1
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCcccccCCCccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRF 68 (302)
.|-|+|+||+++..+++ .+||++||++|+.+|||.||.|+.. +|||++||||
T Consensus 30 ~GselVdWL~~~~~~~~--r~eAv~lg~~Ll~~G~i~HV~~~h~-FkD~~~fYrF 81 (81)
T cd04439 30 LGNEFVSWLLEIGEISK--PEEGVNLGQALLENGIIHHVSDKHQ-FKNEQVLYRF 81 (81)
T ss_pred EhHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCCCC-EecCCeEEeC
Confidence 57899999999999987 6899999999999999999999743 9999999999
No 5
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=99.08 E-value=1.1e-10 Score=88.71 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=50.4
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccC-CcccccCCCccccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEE-HVLTVKNDNTFYRFQT 70 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d-~~l~lk~D~t~YRFQt 70 (302)
.|.|+|+||+++..+.+ .+||++||+.|..+|||.||++ +..+++|++.+||||+
T Consensus 22 ~G~e~v~wL~~~~~~~~--r~eA~~l~~~ll~~g~i~~v~~~~~~~F~d~~~~Yrf~~ 77 (77)
T smart00049 22 TGSELVDWLMDNLEIID--REEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKALYRFTT 77 (77)
T ss_pred EcHHHHHHHHHcCCcCC--HHHHHHHHHHHHHCCCEEEeCCCCcCccccCCEEEEeCC
Confidence 47799999999999876 6899999999999999999998 7888999999999984
No 6
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=99.02 E-value=3.8e-10 Score=83.72 Aligned_cols=28 Identities=36% Similarity=0.758 Sum_probs=26.5
Q ss_pred HHHHhhhhccCCCCCCCCC-CCCCCCCCC
Q psy10896 214 YINYYEQYCEYDPFFTPTE-LANPWLTDN 241 (302)
Q Consensus 214 li~y~eqy~~~Dp~Ls~~~-psNPWisDd 241 (302)
|++||+|+..+||||+|+. ++|||++|+
T Consensus 29 l~~y~e~~~~~Dpll~g~~~~~NP~~~~~ 57 (57)
T cd00068 29 LLKYCEQNAENDPLLTGPPSPSNPWIEKK 57 (57)
T ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCCCCc
Confidence 9999999999999999988 899999875
No 7
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=98.99 E-value=3.4e-10 Score=92.74 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=43.7
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCc----------ccccCCCccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHV----------LTVKNDNTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~----------l~lk~D~t~YRF 68 (302)
.|.|+|+||+++..++. .+||+|||++|+.+|||||+.|.+ .-+.+-.-||+|
T Consensus 33 tGsdVVdWLv~~~~v~~--r~EAl~las~Ll~eGyL~P~gd~sk~a~~~~~~~~fld~~~aly~f 95 (99)
T cd04445 33 TGSCVIDWLVSNQSVRN--RQEGLMLASSLLNEGYLQPAGDTSKNAADGLAENPFLDNPDAFYYF 95 (99)
T ss_pred cccHHHHHHHHhhcccc--hHHHHHHHHHHHHcCCeeecCccchhHhhccccccccCCccceeec
Confidence 47899999999999985 589999999999999999998762 123334567877
No 8
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=98.97 E-value=4.7e-10 Score=84.60 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=45.7
Q ss_pred hcCchHHHHhhhcc--ccCCchhhHhHHHHHHHHccceeeccCCcccccCC-Cccccc
Q psy10896 14 LCPKSLLYLQINIV--WSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKND-NTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l~--~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D-~t~YRF 68 (302)
.|.|+|+|||+++. +.+ .+||++||+.|..+|||.||.++.-.++|+ +++|||
T Consensus 19 ~G~e~v~WL~~~~~~~~~~--r~eA~~l~q~Ll~~g~i~~v~~~~~~F~d~~~~~Yrf 74 (74)
T PF00610_consen 19 TGSEAVDWLMDNFEGFVRD--REEAVQLGQELLDHGFIEHVSDKSKQFKDSKNSLYRF 74 (74)
T ss_dssp EHHHHHHHHHHTSCTSTSS--HHHHHHHHHHHHHCTSEEESSSSSHSS-SSSSSEEEE
T ss_pred EhHHHHHHHHHhccccccC--HHHHHHHHHHHHHCCCEEECCCCCCCEECCCCcEEEC
Confidence 46799999999874 545 689999999999999999999997558888 999998
No 9
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=98.83 E-value=2.6e-09 Score=84.81 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=47.1
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCcccccCCCccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRF 68 (302)
.|-|+|+||+++..+.+ .+||++||+.|...|||.+|.+ ...++|+++||||
T Consensus 32 ~GselVdWL~~~~~~~s--R~eAv~lg~~Ll~~G~i~HV~~-~~~F~D~~~~YrF 83 (83)
T cd04443 32 CGCDLVSWLIEVGLAQD--RGEAVLYGRRLLQGGVLQHITN-EHHFRDENLLYRF 83 (83)
T ss_pred cHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCC-CcCEecCCeeEeC
Confidence 57899999999877776 6899999999999999999986 5699999999998
No 10
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=98.72 E-value=1.3e-08 Score=80.95 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=43.8
Q ss_pred hcCchHHHHhhhcc-ccCCchhhHhHHHHHHHHccceeeccC-CcccccCCCccccc
Q psy10896 14 LCPKSLLYLQINIV-WSDWFTAEALHIAHLMASHGYLFPIEE-HVLTVKNDNTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l~-~~~~~~~EAlHl~~ll~~~GYifPi~d-~~l~lk~D~t~YRF 68 (302)
.|-|+|+||++++. +++ .+||+++|++|+++|||+++.+ |... |+.+|+|
T Consensus 31 ~GsdlVdWL~~~~~~~~~--R~eAv~~g~~Ll~~G~i~HV~~~h~F~---d~~yy~~ 82 (84)
T cd04438 31 IGSDLVDWLLSHVEGLTD--RREARKYASSLLKLGYIRHTVNKITFS---EQCYYVF 82 (84)
T ss_pred cchHHHHHHHHhCCCCCC--HHHHHHHHHHHHHCCcEEecCCCcccc---CCeEEec
Confidence 68899999999995 677 6899999999999999999887 4553 6799998
No 11
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=98.59 E-value=5.1e-08 Score=76.88 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=46.2
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCcccccCCCcccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYR 67 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YR 67 (302)
.|-|+|+||+++..+.+ .+||+++|+.|+.+|||.||.++. .++|+..|||
T Consensus 30 ~GselVdWL~~~~~~~~--R~eAv~~gq~Ll~~g~i~hV~~~~-~F~D~~~~Yr 80 (81)
T cd04448 30 LGKELVNWLIRQGKAAT--RVQAIAIGQALLDAGWIECVSDDD-LFRDEYALYK 80 (81)
T ss_pred ChHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCCC-ccccCccccC
Confidence 57899999999987776 689999999999999999999875 8899999997
No 12
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=98.46 E-value=5.5e-08 Score=73.85 Aligned_cols=46 Identities=28% Similarity=0.580 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHH---------------HHHHhhhhccCCCCCCCC-CCC----CCCCCCCcccccc
Q psy10896 200 HLEAIKKEITSLKI---------------YINYYEQYCEYDPFFTPT-ELA----NPWLTDNPEFWDE 247 (302)
Q Consensus 200 t~~~~~~ei~~~~~---------------li~y~eqy~~~Dp~Ls~~-~ps----NPWisDd~~~W~~ 247 (302)
+.+.+++||+.|+. |++||+ ..+||||+++ .|+ |||+.++...|.|
T Consensus 3 ~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~--~~~DPll~~~~~p~~~~~NPw~~~~~~C~il 68 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELERERIKVSKACKELIEYCE--STPDPLLPGPWGPPSSSSNPWIEKDGCCWIL 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH--GTC-HHHHT--SS--GGGSTTCC-STHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc--CCCCceeCCCCCCCCccCCCCcCCCCCeeeC
Confidence 45677778877776 999999 9999999999 666 9999998777753
No 13
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=98.44 E-value=2e-07 Score=73.37 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=46.3
Q ss_pred hcCchHHHHhhhcc-ccCCchhhHhHHHHHHHHccceeeccCCcccccCCCccccc
Q psy10896 14 LCPKSLLYLQINIV-WSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l~-~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRF 68 (302)
.|-|+|.||++++. +.+ .+||+++|+.|...|||.++++ .-.++|+..|||+
T Consensus 31 ~G~e~VdWL~~~~~~~~~--r~eAv~lgq~Ll~~g~I~hv~~-~~~F~d~~~~Yr~ 83 (83)
T cd04449 31 IGSEAVSWLINNFEDVDT--REEAVELGQELMNEGLIEHVSG-RHPFLDGFYFYYI 83 (83)
T ss_pred EhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHCCCEEecCC-CCCccCCCEeEeC
Confidence 47899999999987 766 6899999999999999999997 4578999999986
No 14
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=98.37 E-value=4.1e-07 Score=69.07 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=44.3
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCcccccCCCcccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYR 67 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YR 67 (302)
.|.|+|+||++++...+ .+||+.+|+.|..+|||.++.+..-.+.|++.+||
T Consensus 30 ~G~e~v~WL~~~~~~~~--r~ea~~~~~~ll~~g~i~~v~~~~~~F~d~~~~Y~ 81 (81)
T cd04371 30 TGSELVDWLLDNLEAIT--REEAVELGQALLKHGLIHHVSDDKHTFRDSYALYR 81 (81)
T ss_pred EcHHHHHHHHHhCCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccccCCeecC
Confidence 37899999999999766 68999999999999999999974445666678875
No 15
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=98.10 E-value=3.3e-06 Score=67.14 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=46.8
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCcccccCCCccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRF 68 (302)
.|-|.|.||+++..+.+ .+||+.+|+.|...|+|=+|.+.-..++|+..||||
T Consensus 30 ~GselVdWL~~~~~~~s--R~eAv~lgq~Ll~~gvi~HV~~~h~~F~D~~~fYrF 82 (82)
T cd04442 30 VGKELIDWLIEHKEASD--RETAIKIMQKLLDHSIIHHVCDEHKEFKDAKLFYRF 82 (82)
T ss_pred EcHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEeccCCcCceeCCceeeeC
Confidence 47799999999987766 689999999999999999997644568999999998
No 16
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=97.97 E-value=9.2e-06 Score=65.14 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=46.0
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCcccccCCCccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRF 68 (302)
.|-|.|+||+++..+.+ .+||+.+|+.|...|+|=.|.+. -.++|+..||||
T Consensus 34 ~GsElVdWL~~~~~~~s--R~eAv~lgq~Ll~~gii~HV~~~-h~F~D~~~fYrF 85 (85)
T cd04441 34 VGSEFIDWLLQEGEAES--RREAVQLCRRLLEHGIIQHVSNK-HHFFDSNLLYQF 85 (85)
T ss_pred EchHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCC-CCccCCCeeeeC
Confidence 47799999999987766 78999999999999999998843 288999999998
No 17
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=97.67 E-value=5.3e-05 Score=64.66 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=49.0
Q ss_pred hcCchHHHHhhhcc-ccCCchhhHhHHHHHHHHccceeeccCCcccccCCCcccccccCcccC
Q psy10896 14 LCPKSLLYLQINIV-WSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRFQTPYFWP 75 (302)
Q Consensus 14 ~~~~iv~WL~~~l~-~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRFQtPYfWp 75 (302)
.|-|.|+||+++.. +.+ .+||+.+|+.|...|+|=+|.+. ..++|+..||||-..|-=+
T Consensus 32 ~GsElVdWLl~~~~~v~s--R~eAv~lgq~Ll~~gvi~HV~~~-h~F~D~~~fYrF~~d~~~~ 91 (125)
T cd04437 32 VGTELVDWLLQQSPCVQS--RSQAVGMWQVLLEEGVLLHVDQE-LHFQDKYQFYRFSDDECSP 91 (125)
T ss_pred ccHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhCCCeEEeCCc-CccccCCeeEEECCccCCc
Confidence 47789999999986 555 68999999999999999998764 2788888999998765433
No 18
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=97.62 E-value=6.9e-05 Score=61.17 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=46.0
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCCcccccCCCcccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRFQ 69 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRFQ 69 (302)
.|-|.|.||+++-.+++ .+||+.+|+.|+..|.|=-|.++ -.++|+..||||=
T Consensus 39 vGsElVdWLi~~g~~~t--R~eAv~~gq~Ll~~gii~HV~~~-h~F~D~~lfYrF~ 91 (93)
T cd04440 39 PASKLVDWLLAQGDCRT--REEAVILGVGLCNNGFMHHVLEK-SEFKDEPLLFRFY 91 (93)
T ss_pred chhHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCEEecCCC-cCcCCcCeEEEEe
Confidence 47789999999966766 79999999999999999888765 4679999999994
No 19
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=97.32 E-value=0.00013 Score=61.15 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=43.0
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCC----------cccccCCC-cccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEH----------VLTVKNDN-TFYRFQ 69 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~----------~l~lk~D~-t~YRFQ 69 (302)
.|-++|.|||++..+-+ ..||+.||+.|..+|+|=||.+- .-++-||+ .+|||=
T Consensus 33 ~Gse~VDWLv~~~~~i~--R~EAv~l~q~Lmd~gli~hV~~~s~~~~~~~~~~~~f~d~s~aly~F~ 97 (109)
T cd04444 33 LGSALVDWLISNSFAAS--RLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFA 97 (109)
T ss_pred cchHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCchhhHHHHhhhhhhccccccccccCchHHHHhH
Confidence 47789999999966555 68999999999999999998732 11355665 899983
No 20
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=96.49 E-value=0.0029 Score=51.89 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=38.9
Q ss_pred hcCchHHHHhhhc------cccCCchhhHhHHHHHHHHccceeeccCC------cccccCC-Ccccc
Q psy10896 14 LCPKSLLYLQINI------VWSDWFTAEALHIAHLMASHGYLFPIEEH------VLTVKND-NTFYR 67 (302)
Q Consensus 14 ~~~~iv~WL~~~l------~~~~~~~~EAlHl~~ll~~~GYifPi~d~------~l~lk~D-~t~YR 67 (302)
.|-|+|+||++.+ +-.+.+-+||+.||+.|..+|+|=||... .-.+.|+ +.|||
T Consensus 29 ~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~gvi~~V~~~~~~~~k~~~F~D~~~~lYR 95 (95)
T cd04446 29 LGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCRVFEAVGTKVFKKKKRAVFEDSSSSLYR 95 (95)
T ss_pred chHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcCCeeeccchhccccccccccCCCcCccC
Confidence 4678899877654 11122357999999999999999999543 2356676 58887
No 21
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=96.33 E-value=0.0035 Score=51.35 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=43.4
Q ss_pred hcCchHHHHhhhc--------cccCCchhhHhHHHHHHHHccceeeccCC--cccccCCCccccc
Q psy10896 14 LCPKSLLYLQINI--------VWSDWFTAEALHIAHLMASHGYLFPIEEH--VLTVKNDNTFYRF 68 (302)
Q Consensus 14 ~~~~iv~WL~~~l--------~~~~~~~~EAlHl~~ll~~~GYifPi~d~--~l~lk~D~t~YRF 68 (302)
.|.|+|+||++.+ .++ -.+|+.|...|..+|-|=+|.+- .-.++|.+.||||
T Consensus 31 ~gsEAVDwL~~~l~~n~~fg~~vt---R~~av~l~qkll~~hVie~V~g~~~~~~FeD~~~lYRF 92 (92)
T cd04447 31 TASEAVDWLHELLRSNSNFGPEVT---RQQTVQLLKKFLKNHVIEDIKGRWGKEDLEDNNHLYRF 92 (92)
T ss_pred chHHHHHHHHHHHHhccccCCCCC---HHHHHHHHHHHHHcCCchhhccccccCccccccccccC
Confidence 4779999999998 444 47999999999999999887543 3359999999998
No 22
>KOG4119|consensus
Probab=96.08 E-value=0.0096 Score=46.71 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHHHH--------HHHHhhhhccCCCCCCC-CCCCCCCCC
Q psy10896 198 VSHLEAIKKEITSLKI--------YINYYEQYCEYDPFFTP-TELANPWLT 239 (302)
Q Consensus 198 ~~t~~~~~~ei~~~~~--------li~y~eqy~~~Dp~Ls~-~~psNPWis 239 (302)
++.++.|+.|...-+. |..|||+....||+++| |...|||..
T Consensus 13 k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~~DpLl~gv~~~~NPf~e 63 (71)
T KOG4119|consen 13 KKEVEQLKLEANIERIKVSKAAAELLEYCETHATEDPLLEGVPEKENPFRE 63 (71)
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCccCccccCCccccCCCcc
Confidence 3455566655544433 99999999999999998 456799964
No 23
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=94.17 E-value=0.034 Score=44.92 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=31.4
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccce
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYL 49 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYi 49 (302)
.|.+||+||++|++..+ .+.|=++|.-|+.+|||
T Consensus 31 sG~~Iv~~L~~n~~~~s--~~~aE~fGQdLv~~gfi 64 (84)
T cd04436 31 SGSEIVSWLQENMPEKD--LDAAEAFGQDLLNQGFL 64 (84)
T ss_pred cHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCchH
Confidence 46799999999999977 78999999999999999
No 24
>KOG3571|consensus
Probab=81.56 E-value=1.1 Score=46.94 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=31.7
Q ss_pred hcCchHHHHhhhc-cccCCchhhHhHHHHHHHHccceee
Q psy10896 14 LCPKSLLYLQINI-VWSDWFTAEALHIAHLMASHGYLFP 51 (302)
Q Consensus 14 ~~~~iv~WL~~~l-~~~~~~~~EAlHl~~ll~~~GYifP 51 (302)
+|-|+|+||.++. ++.+ .-||-.+|+-|.++|||=+
T Consensus 424 iGsDlVdWL~~hVeg~~~--RkeAR~yAs~lLk~g~IrH 460 (626)
T KOG3571|consen 424 IGSDLVDWLVDHVEGLHE--RKEARKYASRLLKAGYIRH 460 (626)
T ss_pred cchhHHHHHHHHhhhhhh--HHHHHHHHHHHHHhCchhh
Confidence 6889999999997 6666 5699999999999999965
No 25
>KOG3590|consensus
Probab=79.14 E-value=1.6 Score=44.86 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 260 KRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 260 ~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
.+-+.+|+.+|.|+..+..|-+||...---.=|.||+.+|.||
T Consensus 109 s~Ls~~L~~il~D~~~LSYFiQYLD~r~~L~LIKFwl~~E~FK 151 (602)
T KOG3590|consen 109 SSLSKTLEQVLHDTIVLSYFIQYLDLRRMLHLIKFWLEAESFK 151 (602)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHHHhHHHHHHHHHhhhhhh
Confidence 4679999999999999999999999888888889999999987
No 26
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=64.85 E-value=9.3 Score=30.41 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=26.7
Q ss_pred CchHHHHhhhccccCCchhhHhHHHHHHHHccceee
Q psy10896 16 PKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFP 51 (302)
Q Consensus 16 ~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifP 51 (302)
|=-|++|.++|++++ .+--..-..|+.-|+||+
T Consensus 65 Gv~v~~I~~~l~~~~---~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 65 GVHVDEIAQQLGMSE---NEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp TEEHHHHHHHSTS-H---HHHHHHHHHHHHTTSEEE
T ss_pred cccHHHHHHHhCcCH---HHHHHHHHHHHhCCeEec
Confidence 345889999998876 677777789999999999
No 27
>PF13308 YARHG: YARHG domain
Probab=62.51 E-value=6 Score=31.06 Aligned_cols=53 Identities=30% Similarity=0.616 Sum_probs=33.7
Q ss_pred hHhHHH--HHHHHccceeeccCCcccccCC-CcccccccCcccCCCCCCCCCchHHHHHHHhhhhhhcchhhhhHHHHHH
Q psy10896 35 EALHIA--HLMASHGYLFPIEEHVLTVKND-NTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKTRLELADYEAENL 111 (302)
Q Consensus 35 EAlHl~--~ll~~~GYifPi~d~~l~lk~D-~t~YRFQtPYfWpS~~w~p~~~DYAIYL~KR~~rnk~rl~L~dyE~E~l 111 (302)
+.|.++ ...|+|||+|- ..+ ..+|. +.++|=|.. . -..|.++|++++
T Consensus 24 ~~L~~~RNeiyAr~Gy~F~--------~~~l~~yF~-~~~WY~~~~-------------------~--~~~l~~~E~~ni 73 (81)
T PF13308_consen 24 EELRIARNEIYARHGYCFK--------SQDLQAYFS-SKSWYKPEY-------------------S--DSVLNEIEKANI 73 (81)
T ss_pred HHHHHHHHHHHHHcCCCCC--------CHHHHHHHc-CCCccCCCc-------------------c--cCCCCHHHHHHH
Confidence 445554 36799999987 222 24444 544444444 1 126889999999
Q ss_pred HHHHHH
Q psy10896 112 ALLQKM 117 (302)
Q Consensus 112 ~~L~k~ 117 (302)
+.|++.
T Consensus 74 ~~i~~~ 79 (81)
T PF13308_consen 74 DLIKKY 79 (81)
T ss_pred HHHHHH
Confidence 998874
No 28
>KOG3590|consensus
Probab=58.22 E-value=4.4 Score=41.89 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=34.0
Q ss_pred HHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 264 FSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 264 ~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
.++-.+|...--+-.|.+||+++-..+-|.||++|..|+
T Consensus 316 v~laDiL~~e~aLfyF~Ey~e~~~~~~~lqFwl~adnF~ 354 (602)
T KOG3590|consen 316 VYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQ 354 (602)
T ss_pred EeHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 457778888888899999999999999999999998763
No 29
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=37.85 E-value=14 Score=33.07 Aligned_cols=55 Identities=22% Similarity=0.413 Sum_probs=44.3
Q ss_pred hccchHHHHHHHHHHhhhhhhcChhhhhhhhhhchhhheecC-CCCCCCCccccchhhhh
Q psy10896 118 FSRKWEFIFMQAEAQSKVDKKRDKLERKVLDSQERAFWDVHR-PMPGCINTTEVDMKKVD 176 (302)
Q Consensus 118 ~~~kWdfI~mQAeeQ~r~~K~R~K~dR~v~dsQErAfW~VhR-Pppg~~n~~e~~~~k~~ 176 (302)
+-.+| -||+.=++....-.+..++.+......+|+++| |.+|+.+|.|.-..=+.
T Consensus 120 iDgTW----~qA~km~~~~p~l~~lp~v~l~~~~~s~y~lRk~~~~~~lsT~EAv~~~L~ 175 (203)
T PF03942_consen 120 IDGTW----RQAKKMLRRSPWLQQLPRVSLKPSPPSFYRLRKQPKEGCLSTLEAVAYALK 175 (203)
T ss_pred ECCch----HHHHHHHhhCccccCCceeeCCCCcccceeeEecCCCCCEeHHHHHHHHHH
Confidence 44566 478887777777788889999999999999999 55899999998766544
No 30
>smart00400 ZnF_CHCC zinc finger.
Probab=36.82 E-value=27 Score=25.12 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=20.1
Q ss_pred hhcCchHHHHhhhccccCCchhhHhHH
Q psy10896 13 ALCPKSLLYLQINIVWSDWFTAEALHI 39 (302)
Q Consensus 13 ~~~~~iv~WL~~~l~~~~~~~~EAlHl 39 (302)
..+||+|+++|+-.+++- .||+..
T Consensus 30 g~gGd~i~fv~~~~~~sf---~eA~~~ 53 (55)
T smart00400 30 GAGGNVISFLMKYDKLSF---VEAVKK 53 (55)
T ss_pred CCCCCHHHHHHHHHCcCH---HHHHHH
Confidence 468999999999999964 699873
No 31
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=36.70 E-value=21 Score=28.36 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=35.0
Q ss_pred CCccchHHHHHHhhcCchHHHHhhhc----ccc---CC----chhhHhHHHHHHHH---ccceee
Q psy10896 1 MKPQESLSELSRALCPKSLLYLQINI----VWS---DW----FTAEALHIAHLMAS---HGYLFP 51 (302)
Q Consensus 1 ~~~~~~~~~~~~~~~~~iv~WL~~~l----~~~---~~----~~~EAlHl~~ll~~---~GYifP 51 (302)
++| |.++.|++-++||+++=+.++. |.- +. ...-..+||.++++ .||++-
T Consensus 10 l~p-e~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr 73 (86)
T PF05542_consen 10 LKP-ERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFLR 73 (86)
T ss_pred CCH-HHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHHH
Confidence 467 8899999999999988766554 111 11 13467889998876 688863
No 32
>PF13592 HTH_33: Winged helix-turn helix
Probab=33.08 E-value=31 Score=25.26 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=27.7
Q ss_pred cCchHHHHhhhccccCCchhhHhHHHHHHHHccceee
Q psy10896 15 CPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFP 51 (302)
Q Consensus 15 ~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifP 51 (302)
+++|.+||.+.|+|.- ---++..+|.++|+-|=
T Consensus 7 ~~~i~~~I~~~fgv~y----s~~~v~~lL~r~G~s~~ 39 (60)
T PF13592_consen 7 LKEIAAYIEEEFGVKY----SPSGVYRLLKRLGFSYQ 39 (60)
T ss_pred HHHHHHHHHHHHCCEE----cHHHHHHHHHHcCCccc
Confidence 4678999999999975 45688999999998764
No 33
>smart00182 CULLIN Cullin.
Probab=28.54 E-value=70 Score=26.77 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=27.5
Q ss_pred hHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHHhcc
Q psy10896 85 DYAVYLCKRTMQNKTRLELADYEAENLALLQKMFSR 120 (302)
Q Consensus 85 DYAIYL~KR~~rnk~rl~L~dyE~E~l~~L~k~~~~ 120 (302)
.|.-+||||.+.++. .=.|-|...+++|+..+..
T Consensus 11 ~Y~~~La~RLL~~~~--~~~~~E~~~i~~Lk~~~G~ 44 (142)
T smart00182 11 YYKKHLAKRLILNRS--ASDDAEENMITKLKQECGY 44 (142)
T ss_pred HHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCh
Confidence 588999999999886 3457888899999987644
No 34
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=27.98 E-value=25 Score=30.64 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHHHHhhcCchHHHHhhhccccCCchhhHhHHHHHHHHccc
Q psy10896 7 LSELSRALCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGY 48 (302)
Q Consensus 7 ~~~~~~~~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GY 48 (302)
|.|+.|.+ |+|-+|-|..-++++ .+.--++..|.++||
T Consensus 83 lee~~rq~-p~i~~w~l~~~~~~~---~~~~~~~~Fm~a~GF 120 (128)
T PF12568_consen 83 LEEVLRQL-PDIKHWWLADEGVEP---QDRAVMAAFMQACGF 120 (128)
T ss_dssp HHHHHHHS--S--EEEE--TT-S-----THHHHHHHHHHHT-
T ss_pred HHHHHHHC-CCCcEEEEecCCCcc---cchHHHHHHHHHcCc
Confidence 56777777 999999998888876 566678889999998
No 35
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=24.33 E-value=42 Score=30.46 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=18.1
Q ss_pred HHHHHHhhhhhhcchhhhhHHHHHHHHHHHHh
Q psy10896 87 AVYLCKRTMQNKTRLELADYEAENLALLQKMF 118 (302)
Q Consensus 87 AIYL~KR~~rnk~rl~L~dyE~E~l~~L~k~~ 118 (302)
|.|||+|.+|=- -| -+|.|..|++.+
T Consensus 15 A~~LC~rgv~V~---m~---~~~~y~~lk~~~ 40 (164)
T PF12076_consen 15 ALALCRRGVQVV---ML---SKERYESLKSEA 40 (164)
T ss_pred HHHHHhcCCEEE---Ee---cHHHHHHHHHHc
Confidence 679999999832 22 456677777665
No 36
>KOG4578|consensus
Probab=24.32 E-value=57 Score=33.08 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=21.7
Q ss_pred chHHHHHHhhcCchHHHHhhhccccCCchhhHhHHHHHHHH--ccceee
Q psy10896 5 ESLSELSRALCPKSLLYLQINIVWSDWFTAEALHIAHLMAS--HGYLFP 51 (302)
Q Consensus 5 ~~~~~~~~~~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~--~GYifP 51 (302)
+|.-||-||-|+|---=|.-+-+.-. -.|+..+|..-+. -|||.|
T Consensus 54 ~srCe~qRAkC~dpql~~~yrG~Ck~--C~~erk~a~eQa~k~~~vFvP 100 (421)
T KOG4578|consen 54 PSRCELQRAKCGDPQLSLKYRGSCKA--CLEERKFAREQAEKDPGVFVP 100 (421)
T ss_pred hhHHHHHHhhcCCCceeEEecCcHHH--HHHHHHHHHHhhhcCCceecc
Confidence 35567888888774222222111111 1245555543332 577777
No 37
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=23.55 E-value=72 Score=24.99 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=24.5
Q ss_pred HHHHHhhhhhhcchhhhhHHHHHHHHHHHHh
Q psy10896 88 VYLCKRTMQNKTRLELADYEAENLALLQKMF 118 (302)
Q Consensus 88 IYL~KR~~rnk~rl~L~dyE~E~l~~L~k~~ 118 (302)
.||-++..|++|--+|+|||.| +.+..|.|
T Consensus 35 ~yL~~~~v~~~g~~gl~~~~~e-~~r~~~~~ 64 (66)
T PF07438_consen 35 DYLFDQFVRDNGYEGLEEYEIE-IERIKKDF 64 (66)
T ss_pred HHHHHHHhhccCcchHHHHHHH-HHHHHHHh
Confidence 6999999999999999999865 55555544
No 38
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=23.46 E-value=40 Score=28.72 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=8.8
Q ss_pred HHHHHHHHHhc
Q psy10896 109 ENLALLQKMFS 119 (302)
Q Consensus 109 E~l~~L~k~~~ 119 (302)
+.++.|++.|.
T Consensus 103 ~~l~eLrkkFe 113 (131)
T PF12923_consen 103 NELAELRKKFE 113 (131)
T ss_pred HHHHHHHHHHH
Confidence 77888888874
No 39
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.44 E-value=78 Score=27.61 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=13.7
Q ss_pred chHHHHhhhccccCCchhhHhHHHHHHHHcc
Q psy10896 17 KSLLYLQINIVWSDWFTAEALHIAHLMASHG 47 (302)
Q Consensus 17 ~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~G 47 (302)
+||.||.++--|+. ++|--|-..|...|
T Consensus 82 EVInylek~GEIt~---e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 82 EVINYLEKRGEITP---EEAKELRSILVKKG 109 (128)
T ss_pred HHHHHHHHhCCCCH---HHHHHHHHHHHHhh
Confidence 34555555544443 45555555554444
Done!