Query psy10896
Match_columns 302
No_of_seqs 201 out of 399
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 21:12:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pbi_A Regulator of G-protein 100.0 2E-103 5E-108 769.3 13.9 269 14-302 53-338 (424)
2 1fqi_A RGS9, regulator of G-pr 99.6 1.8E-16 6.2E-21 132.3 2.3 60 243-302 1-61 (147)
3 2a72_A Regulator of G-protein 99.4 6.8E-14 2.3E-18 116.3 2.7 52 251-302 2-53 (146)
4 2cso_A Pleckstrin; DEP domain, 99.4 1.2E-13 4E-18 116.2 4.1 56 14-71 49-114 (127)
5 2af0_A Regulator of G-protein 99.4 2.2E-14 7.7E-19 119.0 -0.5 52 251-302 12-63 (146)
6 2dlv_A RGS18, regulator of G-p 99.4 8.4E-14 2.9E-18 114.4 2.9 52 251-302 4-55 (140)
7 2ihd_A RGS8, regulator of G-pr 99.4 9.9E-14 3.4E-18 117.2 2.4 60 241-302 16-75 (155)
8 1cmz_A Protein (GAIP (G-alpha 99.4 1.1E-13 3.7E-18 115.6 2.2 52 251-302 9-60 (152)
9 1zv4_X RGS17, regulator of G-p 99.4 1.3E-13 4.4E-18 117.0 2.7 52 251-302 22-73 (158)
10 2crp_A RGS5, regulator of G-pr 99.4 2E-13 6.8E-18 114.0 2.9 52 251-302 14-65 (150)
11 1dk8_A Axin; alpha-helix, PI-h 99.3 2.2E-13 7.4E-18 112.8 2.9 50 252-302 3-52 (147)
12 2jm5_A RGS18, regulator of G-p 99.3 1.7E-13 5.9E-18 114.6 2.1 50 253-302 2-51 (151)
13 3c7l_A Regulator of G-protein 99.3 2.6E-13 8.8E-18 111.9 2.8 50 253-302 9-58 (137)
14 2dlr_A RGS10, regulator of G-p 99.3 1.4E-13 4.7E-18 114.8 0.6 52 251-302 4-55 (149)
15 2oj4_A RGS3, regulator of G-pr 99.3 2.5E-13 8.6E-18 109.4 2.1 46 257-302 2-47 (127)
16 2bv1_A Regulator of G-protein 99.3 1.2E-13 4.1E-18 114.7 0.0 52 251-302 11-62 (145)
17 2ihb_B Regulator of G-protein 99.3 2.3E-13 7.9E-18 114.1 1.7 52 251-302 20-71 (153)
18 2ebz_A RGS12, regulator of G-p 99.3 1.4E-13 4.6E-18 115.8 0.0 51 252-302 5-55 (155)
19 1uhw_A Pleckstrin; three-helix 99.3 2.1E-12 7.3E-17 106.1 4.0 55 14-70 39-103 (109)
20 1agr_E RGS4; GI-alpha-1, hydro 99.2 1.2E-12 4E-17 116.5 1.9 52 251-302 48-99 (205)
21 1v3f_A Pleckstrin 2; three-hel 99.1 5.1E-11 1.8E-15 98.6 4.4 55 15-71 40-105 (120)
22 1fsh_A Dishevelled-1; three-he 98.9 9.5E-10 3.3E-14 89.0 4.2 50 15-68 53-103 (105)
23 2ysr_A DEP domain-containing p 98.5 1.1E-07 3.8E-12 77.0 4.2 54 15-70 43-105 (105)
24 1got_G GT-gamma; complex (GTP- 98.4 5.2E-08 1.8E-12 75.0 1.7 40 199-238 17-72 (73)
25 3ml6_A Chimeric complex betwee 98.1 1.4E-06 4.6E-11 84.2 3.7 52 14-69 40-92 (385)
26 3v5w_G G gamma-I, guanine nucl 96.7 0.0015 5E-08 50.9 4.4 39 200-238 14-68 (77)
27 2ost_A Putative endonuclease; 69.6 1 3.5E-05 38.8 0.2 56 34-90 11-93 (151)
28 1jlp_A PSI-conotoxin PIIIF; mu 50.9 5.9 0.0002 24.4 1.2 12 158-169 10-21 (26)
29 3mjj_A Predicted acetamidase/f 46.5 9.7 0.00033 35.8 2.5 38 4-44 234-271 (301)
30 2ii1_A Acetamidase; 10172637, 43.8 11 0.00039 35.2 2.5 37 5-44 233-269 (301)
31 2f4l_A Acetamidase, putative; 42.1 12 0.0004 35.2 2.3 37 5-44 235-271 (297)
32 3b9t_A Twin-arginine transloca 35.0 17 0.00059 36.3 2.4 38 4-44 419-456 (484)
33 1z67_A Hypothetical protein S4 30.6 24 0.00082 29.7 2.2 30 6-38 65-94 (135)
34 1as5_A Conotoxin Y-PIIIE; neur 28.3 22 0.00076 22.0 1.2 12 158-169 10-21 (26)
35 1jmt_B Splicing factor U2AF 65 26.2 22 0.00076 22.6 0.9 14 154-169 7-20 (28)
36 4gbs_A Putative lipoprotein; P 21.7 31 0.0011 29.4 1.3 25 46-70 152-177 (200)
No 1
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-103 Score=769.32 Aligned_cols=269 Identities=39% Similarity=0.772 Sum_probs=256.8
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCC-cccccCCCcccccccCcccCCCCCCCCCchHHHHHHH
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEH-VLTVKNDNTFYRFQTPYFWPSNCWEPENTDYAVYLCK 92 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~-~l~lk~D~t~YRFQtPYfWpS~~w~p~~~DYAIYL~K 92 (302)
.|.|+|+|||+|+++++ +||+|||++|++|||||||.|| .|++|||+|||||||||||||++|+|+|+||||||||
T Consensus 53 ~Gsd~V~WL~~~~~~~~---~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~py~wps~~w~~~~~dyaiyl~k 129 (424)
T 2pbi_A 53 TGGDVLQWITQRLWISN---LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPAEDTDYAIYLAK 129 (424)
T ss_dssp EHHHHHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECCGGGSCCSSCCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCh---HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCCcccCcccCCCcchhHHHHHHHH
Confidence 47899999999999977 8999999999999999999997 8999999999999999999999999999999999999
Q ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhcChhhhhhhhhhchhhheecCCCCCCCCccccch
Q psy10896 93 RTMQNKTRLELADYEAENLALLQKMFSRKWEFIFMQAEAQSKVDKKRDKLERKVLDSQERAFWDVHRPMPGCINTTEVDM 172 (302)
Q Consensus 93 R~~rnk~rl~L~dyE~E~l~~L~k~~~~kWdfI~mQAeeQ~r~~K~R~K~dR~v~dsQErAfW~VhRPppg~~n~~e~~~ 172 (302)
|+||||| .|+|||+|+|++|+|.++|+|+||+|||++|+|++|+|||+||+|+||||||||+||||||||+|+||+|+
T Consensus 130 r~~~~~~--~l~~~e~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~ 207 (424)
T 2pbi_A 130 RNIKKKG--ILEEYEKENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGL 207 (424)
T ss_dssp HHHTSSS--CCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCS
T ss_pred hhhhhcC--CcchhHHHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCcccccccc
Confidence 9999999 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCccccccccCCCcccccccHHHHHHHHHHHHH---------------HHHHhhhhccCCCCCCCCCCCCCC
Q psy10896 173 KKVDTKKNKTSSTIKTMKSDLSSTCVSHLEAIKKEITSLKI---------------YINYYEQYCEYDPFFTPTELANPW 237 (302)
Q Consensus 173 ~k~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ei~~~~~---------------li~y~eqy~~~Dp~Ls~~~psNPW 237 (302)
.|..+. ...+++|.+.++++|+.|+. |++||+||.+|||||+||.++|||
T Consensus 208 ~~~~~~---------------~~~~~~~~~~~r~~veqLk~~l~~~rikvS~~~e~l~~y~e~~~~~DPll~g~~~sNPw 272 (424)
T 2pbi_A 208 DRVTNP---------------NEVKKQTVTAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLPSNPW 272 (424)
T ss_dssp CBSSCT---------------TCCCCCCHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHGGGCHHHHCCSSCCHH
T ss_pred ccccCc---------------cccccccHHHHHHHHHHHHHHhcccceeHHHHHHHHHHHHHhhccCCCccccCCCCCCC
Confidence 885531 23457799999999999996 999999999999999999999999
Q ss_pred CCCCccccccccc-cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 238 LTDNPEFWDEEKQ-AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 238 isDd~~~W~~n~~-~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
++||+++|+++++ +..||..+|.+|+.||+.||.||.|+..|++||++|||+|||.||+|||+||
T Consensus 273 ~~~d~~~w~~~~~~~~~pt~~~v~~w~~sle~LL~dp~g~~~F~~FL~~e~s~EnL~Fwlave~fk 338 (424)
T 2pbi_A 273 ITDDTQFWDLNAKLVEIPTKMRVERWAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLK 338 (424)
T ss_dssp HHCCTHHHHHTCTTCSSCBHHHHHHTTTCHHHHHHSHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCCCccceeccCCCCCCCCHHHHhhhhcCHHHHHCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 9999999999987 8899999999999999999999999999999999999999999999999985
No 2
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=99.60 E-value=1.8e-16 Score=132.28 Aligned_cols=60 Identities=48% Similarity=1.000 Sum_probs=51.4
Q ss_pred cccccccc-cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 243 EFWDEEKQ-AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 243 ~~W~~n~~-~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
+||++|++ +..||.++|.+|+.||+.||.||.|+..|++||++|||+|||.||++|++||
T Consensus 1 ~~w~~~~~~~~~p~~~~~~~w~~sl~~iL~~p~g~~~F~~FL~~e~~~enl~Fw~~ve~~k 61 (147)
T 1fqi_A 1 QFWDLNAKLVDIPTKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLK 61 (147)
T ss_dssp -------CCCCCCCHHHHHHTTTCHHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 58999998 7899999999999999999999999999999999999999999999999885
No 3
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A
Probab=99.40 E-value=6.8e-14 Score=116.33 Aligned_cols=52 Identities=56% Similarity=1.064 Sum_probs=49.9
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
+..||.++|.+|+.||+.||.||.|+..|++||++|+|+|||.||++|++||
T Consensus 2 ~~~~~~~~~~~w~~sl~~iL~~p~g~~~F~~Fl~~e~~~Enl~Fw~~ve~~k 53 (146)
T 2a72_A 2 MKEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLK 53 (146)
T ss_dssp CCCCCHHHHHHGGGCHHHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999986
No 4
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=99.40 E-value=1.2e-13 Score=116.23 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=50.1
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccC----------CcccccCCCcccccccC
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEE----------HVLTVKNDNTFYRFQTP 71 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d----------~~l~lk~D~t~YRFQtP 71 (302)
.|-|+|+||++++.+.+ .+||+|||++|+.||||+||.| ..+.+++|++|||||..
T Consensus 49 ~GsdlVdWLl~~~~~~s--R~EAv~lg~~Ll~~G~i~hV~d~s~~~~~~~~~~~f~dd~~~lYrF~~~ 114 (127)
T 2cso_A 49 TGNCVIDWLVSNQSVRN--RQEGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDS 114 (127)
T ss_dssp EHHHHHHHHHHTTSCSS--HHHHHHHHHHHHHHTSSEEESHHHHHHHHSSCSCCCCCCTTCEEECSSS
T ss_pred echHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCeEEeCccccccccccccccceecCCCcEEEecCC
Confidence 36799999999998877 7899999999999999999953 37888999999999986
No 5
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=99.39 E-value=2.2e-14 Score=119.02 Aligned_cols=52 Identities=31% Similarity=0.639 Sum_probs=49.9
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
+..||.++|.+|+.||+.+|.||.|+..|++||++|||+|||.||++|++||
T Consensus 12 ~~~~s~~~~~~w~~sl~~iL~~p~g~~~F~~Fl~~e~s~Enl~Fw~~ve~~k 63 (146)
T 2af0_A 12 SMKPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFK 63 (146)
T ss_dssp HTSCCHHHHHHTTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999999999999999999875
No 6
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=8.4e-14 Score=114.37 Aligned_cols=52 Identities=35% Similarity=0.670 Sum_probs=50.0
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
...||.++|.+|+.||++||.||.|+..|++||++|+|+|||.||++|++||
T Consensus 4 ~~~~~~~~~~~w~~sl~~iL~~~~~~~~F~~Fl~~e~s~enl~Fw~~ve~~k 55 (140)
T 2dlv_A 4 GSSGSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFK 55 (140)
T ss_dssp CCCCCHHHHHHHTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhHHHHHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999999999986
No 7
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=99.38 E-value=9.9e-14 Score=117.18 Aligned_cols=60 Identities=37% Similarity=0.658 Sum_probs=47.3
Q ss_pred CccccccccccCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 241 NPEFWDEEKQAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 241 d~~~W~~n~~~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
++.||.-. ++.||.++|.+|+.||+.||.||.|+..|++||++|+|+|||.||++|++||
T Consensus 16 ~~~~~~~~--~~~~s~~~~~~w~~sl~~iL~dp~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk 75 (155)
T 2ihd_A 16 ENLYFQSM--LKRLSTEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFK 75 (155)
T ss_dssp --------------CHHHHHHTTSCHHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHT
T ss_pred cceeeeCC--CCCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 44566533 5689999999999999999999999999999999999999999999999986
No 8
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=99.37 E-value=1.1e-13 Score=115.62 Aligned_cols=52 Identities=37% Similarity=0.691 Sum_probs=48.2
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
+..||.++|.+|+.||+.||.||.|+..|++||++|||+|||.||++|++||
T Consensus 9 ~~~p~~~~~~~~~~sl~~iL~~p~~~~~F~~Fl~~e~s~Enl~Fw~~ve~~k 60 (152)
T 1cmz_A 9 GGIPSPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELK 60 (152)
T ss_dssp ---CCHHHHHHHTTCSHHHHSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHhhHHHHHCChHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999986
No 9
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=99.37 E-value=1.3e-13 Score=116.99 Aligned_cols=52 Identities=33% Similarity=0.713 Sum_probs=50.1
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
+..||.++|.+|+.+|+.||+||.|+..|++||++|||+|||.||++|++||
T Consensus 22 ~~~~~~~~~~~w~~sl~~iL~dp~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk 73 (158)
T 1zv4_X 22 SMNPTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLK 73 (158)
T ss_dssp TSSCCHHHHHHHTTCHHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhHHHHhCCHHHHHHHHHHHHHccCHhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999885
No 10
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2e-13 Score=113.98 Aligned_cols=52 Identities=38% Similarity=0.712 Sum_probs=49.6
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
...||.++|.+|+.||+.||.||.|+..|++||++|||+|||.||++|++||
T Consensus 14 ~~~~s~~~~~~w~~sl~~iL~~~~g~~~F~~Fl~~e~s~Enl~Fw~~ve~yk 65 (150)
T 2crp_A 14 TQKTSLDEALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDYK 65 (150)
T ss_dssp CCCCCHHHHTHHHHCHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999885
No 11
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Probab=99.35 E-value=2.2e-13 Score=112.78 Aligned_cols=50 Identities=32% Similarity=0.514 Sum_probs=46.5
Q ss_pred CCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 252 KEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 252 ~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
..||. +|.+|+.||+.||.||.|+..|++||++|+|+|||.||++|++||
T Consensus 3 ~~~~~-~~~~w~~sl~~iL~~p~g~~~F~~FL~~e~~~enl~Fw~~ve~~k 52 (147)
T 1dk8_A 3 ASPTP-PYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFR 52 (147)
T ss_dssp CCCCC-HHHHHHHCHHHHTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCch-hHHHHHhCHHHHHCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45665 699999999999999999999999999999999999999999885
No 12
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=99.35 E-value=1.7e-13 Score=114.64 Aligned_cols=50 Identities=36% Similarity=0.729 Sum_probs=48.5
Q ss_pred CCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 253 EISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 253 ~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
.||.++|.+|+.||++||.||.|+..|++||++|+|+|||.||++|++||
T Consensus 2 ~~~~~~~~~w~~sl~~iL~~p~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk 51 (151)
T 2jm5_A 2 MVSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFK 51 (151)
T ss_dssp CCCHHHHHHHTTCHHHHHHSHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhHHHHHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999885
No 13
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=99.34 E-value=2.6e-13 Score=111.93 Aligned_cols=50 Identities=36% Similarity=0.606 Sum_probs=44.3
Q ss_pred CCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 253 EISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 253 ~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
.||..+|.+|+.||++||+||.|+..|++||++|+|+|||.||++|++||
T Consensus 9 ~~~~~~~~~w~~sl~~iL~~p~g~~~F~~Fl~~e~s~Enl~Fw~~ve~~k 58 (137)
T 3c7l_A 9 GSFSEDVLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFK 58 (137)
T ss_dssp -----CHHHHHHCHHHHTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHhHHHHHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 58888999999999999999999999999999999999999999999986
No 14
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-13 Score=114.85 Aligned_cols=52 Identities=42% Similarity=0.777 Sum_probs=49.3
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
...||.++|.+|+.+|++||.||.|+..|++||++|+|+|||.||++|++||
T Consensus 4 ~~~~~~~~~~~w~~sl~~iL~~~~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk 55 (149)
T 2dlr_A 4 GSSGSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFK 55 (149)
T ss_dssp SCCCSSCCHHHHHHCHHHHHHSHHHHHHHHHHHHHHTCTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999999999999999999885
No 15
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=99.33 E-value=2.5e-13 Score=109.41 Aligned_cols=46 Identities=39% Similarity=0.733 Sum_probs=44.3
Q ss_pred HHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 257 RRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 257 ~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
++|.+|+.||++||+||.|+..|++||++|+|+|||.||++|++||
T Consensus 2 ~~~~~w~~sl~~iL~~~~g~~~F~~Fl~~e~~~enl~Fw~~ve~~k 47 (127)
T 2oj4_A 2 EEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFK 47 (127)
T ss_dssp THHHHHTTCHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999986
No 16
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=99.33 E-value=1.2e-13 Score=114.74 Aligned_cols=52 Identities=38% Similarity=0.776 Sum_probs=49.5
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
...||.++|.+|+.||+.||.||.|+..|++||++|||+|||.||++|++||
T Consensus 11 ~~~~~~~~~~~~~~sl~~iL~~p~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk 62 (145)
T 2bv1_A 11 KDVLSAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYK 62 (145)
T ss_dssp CEEEEHHHHHHTTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3569999999999999999999999999999999999999999999999885
No 17
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=99.33 E-value=2.3e-13 Score=114.12 Aligned_cols=52 Identities=42% Similarity=0.799 Sum_probs=46.1
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
+..||..+|.+|+.||+.||.||.|+..|++||++|+|+|||.||++|++||
T Consensus 20 ~~~~~~~~~~~w~~sl~~iL~dp~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk 71 (153)
T 2ihb_B 20 SSHQSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFK 71 (153)
T ss_dssp -----CHHHHHHHHCHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 5679999999999999999999999999999999999999999999999885
No 18
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-13 Score=115.76 Aligned_cols=51 Identities=43% Similarity=0.843 Sum_probs=48.5
Q ss_pred CCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 252 KEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 252 ~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
..||.++|.+|+.||++||.||.|+..|++||++|||+|||.||++|++||
T Consensus 5 ~~~~~~~~~~w~~sl~~iL~~p~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk 55 (155)
T 2ebz_A 5 SSGRERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFN 55 (155)
T ss_dssp CCSSCCCTTHHHHCHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhHHHHHCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 468888999999999999999999999999999999999999999999885
No 19
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=99.26 E-value=2.1e-12 Score=106.05 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=46.9
Q ss_pred hcCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccCC---------cccc-cCCCccccccc
Q psy10896 14 LCPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEEH---------VLTV-KNDNTFYRFQT 70 (302)
Q Consensus 14 ~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d~---------~l~l-k~D~t~YRFQt 70 (302)
.|-|+|+||++++.+++ .+||+|||++|+.+|||+||.|| .-.+ +++..|||||-
T Consensus 39 ~GselVdWLi~~~~~~~--R~EAv~lgq~Ll~~G~i~hV~d~~~~~~~~~~~~~F~D~~~~lYrF~~ 103 (109)
T 1uhw_A 39 TGSGVIDWLVSNKLVRN--RQEGLMISASLLSEGYLQPAGDLSKNAADGIAENPFLDSPDAFYYFPD 103 (109)
T ss_dssp CHHHHHHHHHHHTSSSS--HHHHHHHHHHHHHHTSSEECSSSHHHHHHHSSSCCCCCCSSCCEECTT
T ss_pred cchHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCeEEeCccccccccccccccceecCCCcEEEEcC
Confidence 36799999999998987 78999999999999999999986 2234 55569999985
No 20
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=99.25 E-value=1.2e-12 Score=116.53 Aligned_cols=52 Identities=37% Similarity=0.769 Sum_probs=48.1
Q ss_pred cCCCCHHHHhHHHHHHHHHhCCcccHHHHHHhhhhcCCchhhHHHHhhcccC
Q psy10896 251 AKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEYT 302 (302)
Q Consensus 251 ~~~pt~~~v~rWa~Sfe~LL~dp~G~~~F~~FLkkEfSeENL~FWlAcE~~K 302 (302)
...||.++|.+|+.+|+.||.||.|+..|++||++|||+|||.||++|++||
T Consensus 48 ~~~~s~~~~~~w~~sle~IL~dp~g~~~F~~FL~~e~s~EnL~Fw~ave~yk 99 (205)
T 1agr_E 48 CQRVSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYK 99 (205)
T ss_dssp ---CCHHHHHHHTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhhHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999999999885
No 21
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=99.09 E-value=5.1e-11 Score=98.64 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=48.6
Q ss_pred cCchHHHHhhhccccCCchhhHhHHHHHHHHccceeeccC----------CcccccCCC-cccccccC
Q psy10896 15 CPKSLLYLQINIVWSDWFTAEALHIAHLMASHGYLFPIEE----------HVLTVKNDN-TFYRFQTP 71 (302)
Q Consensus 15 ~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~~~GYifPi~d----------~~l~lk~D~-t~YRFQtP 71 (302)
|-|+|+||+++..+.+ .+||++||+.|+.+|||.||.+ +...++||+ +||||+..
T Consensus 40 GsdlVdWL~~~~~~~s--R~eAv~lgq~Ll~~G~i~hV~~~s~~~~~~~~~~~~f~d~~~~lYrF~~~ 105 (120)
T 1v3f_A 40 GSSLVDWLISSNFAAS--RLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAES 105 (120)
T ss_dssp HHHHHHHHHHTTSCSS--HHHHHHHHHHHHHHTSEEECSSSSCSSCCCSSCCCCCCCSSSCEEEECSS
T ss_pred hHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCeEEccccccccccccccccceecCCccEEEeChh
Confidence 6789999999988776 6899999999999999999986 656677776 99999976
No 22
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=98.88 E-value=9.5e-10 Score=89.01 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=42.9
Q ss_pred cCchHHHHhhhc-cccCCchhhHhHHHHHHHHccceeeccCCcccccCCCccccc
Q psy10896 15 CPKSLLYLQINI-VWSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRF 68 (302)
Q Consensus 15 ~~~iv~WL~~~l-~~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRF 68 (302)
|-|+|+||++++ ++.+ .+||+++|+.|+.+|||+|+.+.. +++ |+.+|||
T Consensus 53 G~dlVdWL~~~~~~~~~--r~eAv~lg~~Ll~~G~I~hv~~~~-~F~-D~~~y~f 103 (105)
T 1fsh_A 53 GADVVDWLYTHVEGFKE--RREARKYASSMLKHGFLRHTVNKI-TFS-EQCYYVF 103 (105)
T ss_dssp HHHHHHHHHHHCCCCSS--HHHHHHHHHHHHHTTTEECSSSSC-CCC-SSSCCEE
T ss_pred cHHHHHHHHHhCcCCCC--HHHHHHHHHHHHHCCcEEEcCCCC-ccc-CCCeeec
Confidence 668999999999 6777 699999999999999999997532 556 5789998
No 23
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=1.1e-07 Score=76.95 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=46.2
Q ss_pred cCchHHHHhhhc------c-ccCCchhhHhHHHHHHHHccceeeccC-C-cccccCCCccccccc
Q psy10896 15 CPKSLLYLQINI------V-WSDWFTAEALHIAHLMASHGYLFPIEE-H-VLTVKNDNTFYRFQT 70 (302)
Q Consensus 15 ~~~iv~WL~~~l------~-~~~~~~~EAlHl~~ll~~~GYifPi~d-~-~l~lk~D~t~YRFQt 70 (302)
|-|.|+||++++ + +.+ .+||++||+.|..+|+|-||.+ | ...++|++.||||.|
T Consensus 43 GsE~VdWL~~~l~~~~~fg~~~s--R~eAv~lgq~Ll~~gvi~hV~~~~~~~~F~D~~~lYrF~~ 105 (105)
T 2ysr_A 43 AGEAVDWLYDLLRNNSNFGPEVT--RQQTIQLLRKFLKNHVIEDIKGRWGSENVDDNNQLFRFPA 105 (105)
T ss_dssp HHHHHHHHHHHHHHSSSSTTTCC--HHHHHHHHHHHHHTTSSEESSCCCSCSCCCSSSCEEECCC
T ss_pred chHHHHHHHHhcccccccCccCC--HHHHHHHHHHHHHCCCeEeccCccCcccccCCCeeEEecC
Confidence 578999999983 2 333 6899999999999999999986 5 578999999999975
No 24
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=98.43 E-value=5.2e-08 Score=74.99 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHH---------------HHHHhhhhccCCCCCCCCC-CCCCCC
Q psy10896 199 SHLEAIKKEITSLKI---------------YINYYEQYCEYDPFFTPTE-LANPWL 238 (302)
Q Consensus 199 ~t~~~~~~ei~~~~~---------------li~y~eqy~~~Dp~Ls~~~-psNPWi 238 (302)
.+.+.+|++|+.||. |++||+|+..+||||+|+. ++|||+
T Consensus 17 ~~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~~~DpLl~g~~~~~NPf~ 72 (73)
T 1got_G 17 TEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFK 72 (73)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGCHHHHCCCGGGCTTC
T ss_pred ccHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCCC
Confidence 467899999999997 9999999999999999987 899996
No 25
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=98.10 E-value=1.4e-06 Score=84.22 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=43.2
Q ss_pred hcCchHHHHhhhcc-ccCCchhhHhHHHHHHHHccceeeccCCcccccCCCcccccc
Q psy10896 14 LCPKSLLYLQINIV-WSDWFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRFQ 69 (302)
Q Consensus 14 ~~~~iv~WL~~~l~-~~~~~~~EAlHl~~ll~~~GYifPi~d~~l~lk~D~t~YRFQ 69 (302)
.|-|+|+||+++++ +.+ .+||+|+|++|+.+|||.++.+-. .++ |+.+|||-
T Consensus 40 ~G~elVdWL~~~~~~~~~--R~eA~~~g~~Ll~~G~i~hv~~~~-~F~-d~~~y~f~ 92 (385)
T 3ml6_A 40 LGSDVVDWLYHHVEGFPE--RREARKYASGLLKAGLIRHTVNKI-TFS-EQCYYVFG 92 (385)
T ss_dssp EHHHHHHHHHHTCCSCSS--HHHHHHHHHHHHHHSSEEESSSCS-SCC-SSSEEEEC
T ss_pred EhHHHHHHHHHccCCCCC--HHHHHHHHHHHHhCCcEEEcCCcc-eec-CcceEEee
Confidence 36799999999985 777 689999999999999999998532 456 56789885
No 26
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=96.72 E-value=0.0015 Score=50.86 Aligned_cols=39 Identities=28% Similarity=0.551 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHH---------------HHHHhhhhccCCCCCCCC-CCCCCCC
Q psy10896 200 HLEAIKKEITSLKI---------------YINYYEQYCEYDPFFTPT-ELANPWL 238 (302)
Q Consensus 200 t~~~~~~ei~~~~~---------------li~y~eqy~~~Dp~Ls~~-~psNPWi 238 (302)
++...|+.++.|+. |+.||++....||+|+|. ...|||.
T Consensus 14 ~i~q~rk~VeQLr~Ea~i~RikVSqaaadL~~yc~~~~~~DpLl~Gvp~~~NPFk 68 (77)
T 3v5w_G 14 SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFR 68 (77)
T ss_dssp CHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHSGGGCTTTSCCCGGGCTTT
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCCC
Confidence 45566677777775 999999999999999995 4579995
No 27
>2ost_A Putative endonuclease; protein-DNA complex, restriction enzyme fold,PD-(D/E)-XK MOT homing endonuclease, group I intron, hydrolase-DNA complex; 3.10A {Synechocystis SP}
Probab=69.63 E-value=1 Score=38.85 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=44.8
Q ss_pred hhHhHHHHHHHHccc--eeeccCC---cccccCCCcccccccCccc--------------C-CC-------CCCCCCchH
Q psy10896 34 AEALHIAHLMASHGY--LFPIEEH---VLTVKNDNTFYRFQTPYFW--------------P-SN-------CWEPENTDY 86 (302)
Q Consensus 34 ~EAlHl~~ll~~~GY--ifPi~d~---~l~lk~D~t~YRFQtPYfW--------------p-S~-------~w~p~~~DY 86 (302)
+|++-++ -|..+|| ++|..|| -|++.-||-|+|-|-=|=| + ++ .-..+|.||
T Consensus 11 aE~~v~~-~l~e~Gy~Vl~P~~d~~~YDLVvd~~G~l~RIQvKta~~~~~~~~f~~d~~~~~~~~~~~~~~~Y~~~D~DF 89 (151)
T 2ost_A 11 AQQAAIM-RALKMGWGVLKPLGDRLSYDLVFDVEGILLKVQVKSSWKSEKTGNYVVDNRRTRTNRRNIVRSPYRGNDFDF 89 (151)
T ss_dssp HHHHHHH-HHHHTTCEEEEESSTTSSCSEEEEETTEEEEEEEEECEEETTTTEEEEECSEEECSSSSCEEECCCTTSCSE
T ss_pred HHHHHHH-HHHHCCcEEEeecCCCCCccEEEEeCCeEEEEEEEEEEEcCceeEEEeecceecccccccccCCcccCcccE
Confidence 5666666 5667787 7899998 7899999999999999988 3 22 466888999
Q ss_pred HHHH
Q psy10896 87 AVYL 90 (302)
Q Consensus 87 AIYL 90 (302)
|||.
T Consensus 90 aVy~ 93 (151)
T 2ost_A 90 AVAY 93 (151)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9987
No 28
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=50.89 E-value=5.9 Score=24.44 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=10.2
Q ss_pred cCCCCCCCCccc
Q psy10896 158 HRPMPGCINTTE 169 (302)
Q Consensus 158 hRPppg~~n~~e 169 (302)
-||-|||-|.+-
T Consensus 10 crpfpgcynalc 21 (26)
T 1jlp_A 10 CRPFPGCYNALC 21 (26)
T ss_dssp CCCCTTTTTSST
T ss_pred ccCCCchhhhhh
Confidence 599999999874
No 29
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=46.54 E-value=9.7 Score=35.83 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=34.0
Q ss_pred cchHHHHHHhhcCchHHHHhhhccccCCchhhHhHHHHHHH
Q psy10896 4 QESLSELSRALCPKSLLYLQINIVWSDWFTAEALHIAHLMA 44 (302)
Q Consensus 4 ~~~~~~~~~~~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~ 44 (302)
.++|.|-.|.++-+.|+||++.++++. +||..|.++-+
T Consensus 234 ~~~ld~A~r~A~~~mi~~L~~~~gls~---~eAy~llS~a~ 271 (301)
T 3mjj_A 234 AESLDKAVEIAVHDMAELFKKHTDLST---EGIATLFSITG 271 (301)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhCcCH---HHHHHHhHhhc
Confidence 468999999999999999999999987 89999988754
No 30
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=43.77 E-value=11 Score=35.24 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.4
Q ss_pred chHHHHHHhhcCchHHHHhhhccccCCchhhHhHHHHHHH
Q psy10896 5 ESLSELSRALCPKSLLYLQINIVWSDWFTAEALHIAHLMA 44 (302)
Q Consensus 5 ~~~~~~~~~~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~ 44 (302)
++|.+-.|.++-+.|+||+++++++. +||..|.++-+
T Consensus 233 ~dl~~A~r~A~~~mi~~L~~~~gls~---~eAy~llS~a~ 269 (301)
T 2ii1_A 233 ETLDAAAVQATKNMATFLANRTALSI---EEAGMLLSGAG 269 (301)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSSCCH---HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcCH---HHHHHHhHhhc
Confidence 57889999999999999999999987 89999988763
No 31
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=42.09 E-value=12 Score=35.16 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=33.3
Q ss_pred chHHHHHHhhcCchHHHHhhhccccCCchhhHhHHHHHHH
Q psy10896 5 ESLSELSRALCPKSLLYLQINIVWSDWFTAEALHIAHLMA 44 (302)
Q Consensus 5 ~~~~~~~~~~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~ 44 (302)
++|.+-.|.++-+.|+||++.++++. +||..|.++-+
T Consensus 235 ~dl~~A~r~A~~~mi~~L~~~~gls~---~eAy~llS~a~ 271 (297)
T 2f4l_A 235 PDIEEALKEVTRETVWFIQRRKTIPF---TDAYMLASLSV 271 (297)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcCH---HHHHHHhHhhc
Confidence 57889999999999999999999987 89999988764
No 32
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=34.98 E-value=17 Score=36.27 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=33.4
Q ss_pred cchHHHHHHhhcCchHHHHhhhccccCCchhhHhHHHHHHH
Q psy10896 4 QESLSELSRALCPKSLLYLQINIVWSDWFTAEALHIAHLMA 44 (302)
Q Consensus 4 ~~~~~~~~~~~~~~iv~WL~~~l~~~~~~~~EAlHl~~ll~ 44 (302)
+++|.+-.|.++-+.|+||+++++++. +||.-|.++-+
T Consensus 419 ~~~Ld~A~r~A~~~mi~~L~~~~Gls~---~eAy~LlS~a~ 456 (484)
T 3b9t_A 419 KSSLDLALKDAFRKMRHFLMQTQNLTE---DEAVSLMSIGV 456 (484)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHhhc
Confidence 368999999999999999999999997 89998877653
No 33
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=30.58 E-value=24 Score=29.65 Aligned_cols=30 Identities=20% Similarity=0.085 Sum_probs=26.4
Q ss_pred hHHHHHHhhcCchHHHHhhhccccCCchhhHhH
Q psy10896 6 SLSELSRALCPKSLLYLQINIVWSDWFTAEALH 38 (302)
Q Consensus 6 ~~~~~~~~~~~~iv~WL~~~l~~~~~~~~EAlH 38 (302)
|-++|.+++|+|.|+.|.++++++. +||..
T Consensus 65 s~~ql~~~lG~~~l~~lA~q~Gl~~---~~~~~ 94 (135)
T 1z67_A 65 SGEQLESALGTNAVSDLGQKLGVDT---STASS 94 (135)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHTCCH---HHHHH
T ss_pred CHHHHHHHHChHHHHHHHHHHCcCH---HHHHH
Confidence 5678999999999999999999986 67664
No 34
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=28.30 E-value=22 Score=21.99 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.6
Q ss_pred cCCCCCCCCccc
Q psy10896 158 HRPMPGCINTTE 169 (302)
Q Consensus 158 hRPppg~~n~~e 169 (302)
-||-|||-|.+-
T Consensus 10 cr~~pgc~~a~c 21 (26)
T 1as5_A 10 CRRYPGCSSASC 21 (26)
T ss_dssp CCCCTTCTTCCC
T ss_pred cccCCCcchhhh
Confidence 489999998763
No 35
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=26.18 E-value=22 Score=22.56 Aligned_cols=14 Identities=50% Similarity=1.092 Sum_probs=10.8
Q ss_pred hheecCCCCCCCCccc
Q psy10896 154 FWDVHRPMPGCINTTE 169 (302)
Q Consensus 154 fW~VhRPppg~~n~~e 169 (302)
|||| ||||--++|=
T Consensus 7 ~WDv--pP~GyE~vtp 20 (28)
T 1jmt_B 7 YWDV--PPPGFEHITP 20 (28)
T ss_dssp CBTC--CCTTCTTSCH
T ss_pred ccCC--CCCCccccCH
Confidence 8998 7889776653
No 36
>4gbs_A Putative lipoprotein; PF14064 family, transport, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MLY; 2.48A {Bacteroides fragilis}
Probab=21.73 E-value=31 Score=29.41 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=20.4
Q ss_pred ccceeeccCCccccc-CCCccccccc
Q psy10896 46 HGYLFPIEEHVLTVK-NDNTFYRFQT 70 (302)
Q Consensus 46 ~GYifPi~d~~l~lk-~D~t~YRFQt 70 (302)
|.-+|++.+|+++|| .||.+|++|-
T Consensus 152 ~~~~~~~~~~vyVirtadG~YaKlq~ 177 (200)
T 4gbs_A 152 MPPIYTPSNXVYLLRMXDDTMAAIRL 177 (200)
T ss_dssp SSCEEEECCCCEEEECTTSCEEEEEE
T ss_pred CCeEEcCCCcEEEEEeCCCCEEEEEE
Confidence 445888999999998 5799999983
Done!