RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10896
(302 letters)
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 306 bits (785), Expect = e-103
Identities = 105/270 (38%), Positives = 161/270 (59%), Gaps = 4/270 (1%)
Query: 34 AEALHIAHLMASHGYLFPIEE-HVLTVKNDNTFYRFQTPYFWPSNCWEPENTDYAVYLCK 92
EA ++ + + +GY++P+++ L +K D++ YRFQTPYFWP+ W E+TDYA+YL K
Sbjct: 70 LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPAEDTDYAIYLAK 129
Query: 93 RTMQNKTRLELADYEAENLALLQKMFSRKWEFIFMQAEAQSKVDKKRDKLERKVLDSQER 152
R ++ K LE +YE EN L K + KW+F+ MQA+ Q + K+R+K +R LD QE+
Sbjct: 130 RNIKKKGILE--EYEKENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEK 187
Query: 153 AFWDVHRPMPGCINTTEVDMKKVDTKKNKTSSTIKTMKSDLSSTCVSHLEAIKKEITSLK 212
A+W VHR PG N + + +V T+ ++ ++ + + + K SL
Sbjct: 188 AYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTAVRKEIMYYQQALMRSTVKSSVSLG 247
Query: 213 IYINYYEQYCEYDPFFTPTELANPWLTDNPEFWDEEKQAKEI-SARRIKRWAFSLQELLK 271
+ Y EQ+ D + +NPW+TD+ +FWD + EI + R++RWAF+ EL++
Sbjct: 248 GIVKYSEQFSSNDAIMSGCLPSNPWITDDTQFWDLNAKLVEIPTKMRVERWAFNFSELIR 307
Query: 272 DPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
DP GR F FL KEFSGENL FWEA ++
Sbjct: 308 DPKGRQSFQYFLKKEFSGENLGFWEACEDL 337
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium, SGC,
signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B*
2bt2_A
Length = 155
Score = 74.7 bits (183), Expect = 1e-16
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 229 TPTELANPWLTDNPEFWDEEKQAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFS 288
T+N F K +S RWA S LL G F FL EFS
Sbjct: 5 HHHSSGVDLGTENLYFQ---SMLKRLSTEEATRWADSFDVLLSHKYGVAAFRAFLKTEFS 61
Query: 289 GENLKFWEAVQEY 301
ENL+FW A +E+
Sbjct: 62 EENLEFWLACEEF 74
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 73.5 bits (180), Expect = 3e-16
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 243 EFWDEEKQAKEI-SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+FWD + +I + R++RWAF+ EL++DP GR F FL KEFSGENL FWEA ++
Sbjct: 1 QFWDLNAKLVDIPTKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDL 60
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 71.9 bits (176), Expect = 9e-16
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 248 EKQAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
K +SA + +W+ SL++LL + G++ F FL EFS EN++FW A ++Y
Sbjct: 8 SKSKDVLSAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDY 61
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 70.4 bits (172), Expect = 4e-15
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 252 KEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
KE S +R+KRW F + E LKDP+GR+ F KFL+ EFS ENL+FW AV++
Sbjct: 3 KEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDL 52
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 69.6 bits (170), Expect = 7e-15
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 239 TDNPEFWDEEKQAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAV 298
+ ++ + ++ S +W SL +LL++ G F FL EFS ENL+FW A
Sbjct: 2 SSGSSGPEKPAKTQKTSLDEALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIAC 61
Query: 299 QEY 301
++Y
Sbjct: 62 EDY 64
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 149
Score = 68.5 bits (167), Expect = 2e-14
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
S + +WA SL+ LL+DP G F +FL KEFS EN+ FW A +++
Sbjct: 8 SLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDF 54
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein
signalling domain, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 68.2 bits (166), Expect = 3e-14
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+ + WA S + LL+DPLG +FT+FL KEFS EN+ FW+A + +
Sbjct: 4 EEQPVASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERF 50
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 155
Score = 68.2 bits (166), Expect = 3e-14
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
RR+ WA S + LL+DP+G +F+ FL KEFS EN+ FW+A + +
Sbjct: 8 RERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYF 54
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 67.3 bits (164), Expect = 5e-14
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 246 DEEKQAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+ Q+ + S + W+ + ELL G F FL EF EN++FW A +++
Sbjct: 7 NLYFQSMKPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDF 62
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 67.4 bits (164), Expect = 6e-14
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 246 DEEKQAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+ Q+ +A + W+ + +++K P GR+ F +FL E+S ENL FW A ++
Sbjct: 17 NLYFQSMNPTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDL 72
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 66.1 bits (161), Expect = 8e-14
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 256 ARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+ +W SL++LL G F FL EFS ENL+FW A +++
Sbjct: 1 SEEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDF 46
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 66.6 bits (162), Expect = 9e-14
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
S ++ WA S +L+ P GR F FL E+S EN+ FW A +E
Sbjct: 13 SPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEEL 59
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 140
Score = 66.2 bits (161), Expect = 1e-13
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
S +W S +LL G + FT+FL EFS EN++FW A +++
Sbjct: 8 SPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDF 54
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 66.6 bits (162), Expect = 1e-13
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 254 ISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+S +W S +LL G + FT+FL EFS EN++FW A +++
Sbjct: 3 VSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDF 50
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 65.8 bits (160), Expect = 2e-13
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 252 KEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
S + +WA SL+ LL+DP G F +FL KEFS EN+ FW A +++
Sbjct: 21 SHQSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDF 70
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 64.7 bits (157), Expect = 4e-13
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+WA SL LL D G F FL +E + L FW A +
Sbjct: 5 PTPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGF 51
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 63.1 bits (153), Expect = 1e-12
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+ + W S LL G F FL EFS ENL+FW A +E+
Sbjct: 11 FSEDVLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEF 57
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 60.2 bits (145), Expect = 5e-11
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 246 DEEKQAKEISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
D+ + +S +K+WA SL+ L+ G F FL E+S EN+ FW + +EY
Sbjct: 43 DKVVTCQRVSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEY 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 4e-07
Identities = 41/264 (15%), Positives = 76/264 (28%), Gaps = 82/264 (31%)
Query: 42 LMASHGYLFPIEEHVLTVKNDNTFY------RFQTPYFWPSNCWEPENTDYAVYLCKRTM 95
L SHG L EHVL V + F +F PE T+
Sbjct: 9 LTLSHGSL----EHVLLVPTASFFIASQLQEQFNK--------ILPEPTE---------- 46
Query: 96 QNKTRLELADYEAENLALLQKMFSRKWEFI-FMQAEAQSKVDKKRDKLERKVLDSQERAF 154
D L+ K F+ ++ + + + D++ L E +
Sbjct: 47 ----GFAADDEPTTPAELVGK-------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 155 W---DVH---RPMPGCINTTEVDMKKV-----DTKKNKTSSTIKTMKSDLSSTCVSHLEA 203
D+H + +TT V K++ + K S L A
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-------FRA 148
Query: 204 IKKEITSLKIY--------INYY-----EQYCEYDPFFTP-TELANPWLTDNPEFWDEEK 249
+ + + ++ + Y + Y Y + + L E
Sbjct: 149 VGEG--NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL--------SEL 198
Query: 250 QAKEISARRIKRWAFSLQELLKDP 273
+ A ++ ++ E L++P
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENP 222
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Length = 127
Score = 41.7 bits (97), Expect = 4e-05
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 35 EALHIAHLMASHGYLFPIEEHVLTV----------KNDNTFYRFQTPYFWPSNCWEPEN 83
E L IA + + GYL P + + N + FY F F+ P +
Sbjct: 68 EGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDSGFFCEENSGPSS 126
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Mus musculus} SCOP:
a.4.5.31 PDB: 1w4m_A
Length = 109
Score = 40.4 bits (94), Expect = 7e-05
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 35 EALHIAHLMASHGYLFPIEEHVLT----------VKNDNTFYRFQ 69
E L I+ + S GYL P + + + + FY F
Sbjct: 58 EGLMISASLLSEGYLQPAGDLSKNAADGIAENPFLDSPDAFYYFP 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 38/243 (15%), Positives = 71/243 (29%), Gaps = 63/243 (25%)
Query: 112 ALLQKMFSRKWEFIFMQAEAQSKVDKKRDKLER--KVLDSQE--RAFW-------DVHRP 160
++ + W+ DK +E VL+ E + F H P
Sbjct: 335 ESIRDGLAT-WDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 161 MPG-CI---NTTEVDMKKVDTKKNKTSSTIKTMKSDLSSTCVSHLEAIKK--EITSL-KI 213
+ + + D+ V K +K S K K S +LE K +L +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 214 YINYYEQYCEYDPF-FTPTELANPWL---------TDNPEFWDEEK---------QAKEI 254
+++Y +D P L + ++PE + + K
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 255 SARRIKRWAFSLQELLKD-PLGRDHFTK--------------FLDKEFSGENL---KFWE 296
+ S+ L+ + + FL K ENL K+ +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK--IEENLICSKYTD 566
Query: 297 AVQ 299
++
Sbjct: 567 LLR 569
Score = 30.6 bits (68), Expect = 0.81
Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 53/155 (34%)
Query: 9 ELSRALCPKSLLYLQINIVWSD--WFTAEALHIAHLMASHGYLFPIEEHVLTVKNDNTFY 66
+ + L+ + D +++ HI H H+ +++
Sbjct: 454 NIPKTFDSDDLI-----PPYLDQYFYS----HIGH-------------HLKNIEHPERMT 491
Query: 67 RFQTPYF---W----------PSNCWEPENTD------YAVYLCKRTMQNKTRL-ELAD- 105
F+ + + N Y Y+C + + + + D
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 106 --------YEAENLALLQKMFSRKWEFIFMQAEAQ 132
++ LL+ + E IF +A Q
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Mus musculus} SCOP: a.4.5.31
Length = 120
Score = 34.7 bits (79), Expect = 0.009
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 35 EALHIAHLMASHGYLFPIEEHVLTV-----------KNDNTFYRFQTPY 72
EA+ +A ++ +L P+ + + Y F Y
Sbjct: 58 EAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAESY 106
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.22
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 202 EAIKKEITSLKIY 214
+A+KK SLK+Y
Sbjct: 20 QALKKLQASLKLY 32
Score = 27.2 bits (59), Expect = 4.5
Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 248 EKQA-KEISARRIKRWA 263
EKQA K++ A +K +A
Sbjct: 18 EKQALKKLQA-SLKLYA 33
>3giw_A Protein of unknown function DUF574; rossmann-fold protein,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces
avermitilis} PDB: 3go4_A*
Length = 277
Score = 28.0 bits (62), Expect = 3.8
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 223 EYDPFFTPTELANPWLTDNPEFWDEEKQAKEISARRIKRWA 263
E + FF EL P + ++ + A I I +
Sbjct: 231 EAEEFFEGLELVEPGIVQVHKWHPDAATADGIRDEDIAMYG 271
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.8 bits (62), Expect = 5.9
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 27/119 (22%)
Query: 94 TMQNKTRLELADYEAENLALLQKMFSRKWEFIFMQAEAQSKVDKKRDKLERKVLDSQERA 153
+Q R +A E + L ++A + + K LE K++ Q +
Sbjct: 892 YLQCCYRRMMAKRELKKLK--------------IEARSVERYKKLHIGLENKIMQLQRK- 936
Query: 154 FWDVHRPMPGCINTTEVDMKKVDTKKNKTSSTIKTMKSDLSSTCVSHLEAIKKEITSLK 212
I+ + K + K N T T L S V L ++E +
Sbjct: 937 -----------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSD-VERLRMSEEEAKNAT 983
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 27.2 bits (61), Expect = 7.9
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 135 VDKKRDKLERKVLDSQERAFWDVHRPMPGCI---NTTEV 170
KL ++S H +P + NTTEV
Sbjct: 119 APCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEV 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.410
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,611,583
Number of extensions: 260665
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 37
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)