RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10896
(302 letters)
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 128
Score = 65.8 bits (160), Expect = 4e-14
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 254 ISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+S +K+WA SL+ L+ G F FL E+S EN+ FW + +EY
Sbjct: 1 VSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEY 48
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 138
Score = 65.0 bits (158), Expect = 1e-13
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+ R++RWAF+ EL++DP GR F FL KEFSGENL FWEA ++
Sbjct: 7 TKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDL 53
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 64.2 bits (156), Expect = 2e-13
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 254 ISARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+S +W S +LL G + FT+FL EFS EN++FW A +++
Sbjct: 1 VSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDF 48
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 61.2 bits (148), Expect = 2e-12
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 261 RWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
+WA SL LL D G F FL +E + L FW A +
Sbjct: 11 KWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGF 51
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 128
Score = 60.4 bits (146), Expect = 4e-12
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 255 SARRIKRWAFSLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
S ++ WA S +L+ P GR F FL E+S EN+ FW A +E
Sbjct: 2 SPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEEL 48
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 50.4 bits (120), Expect = 9e-09
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 265 SLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
S LL G F FL EFS ENL+FW A +E+
Sbjct: 1 SFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEF 37
>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 49.8 bits (119), Expect = 4e-08
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 265 SLQELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQEY 301
L++L P F +++ + L F+ + Y
Sbjct: 8 DLEKLKSRPAHLGVFLRYIFSQADPSPLLFYLCAEVY 44
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 157
Score = 46.9 bits (111), Expect = 3e-07
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 257 RRIKRWAFSLQELLKDPLGRDHFTKFLDKEFS--GENLKFWEAVQEY 301
R + +++ LG F F K ++F+E +++Y
Sbjct: 18 YLEDRGEVTFEKIFSQKLGYLLFRDFCLKHLEEAKPLVEFYEEIKKY 64
>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 115
Score = 43.4 bits (102), Expect = 3e-06
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 35 EALHIAHLMASHGYLFPIEEHVLT----------VKNDNTFYRFQTPYFWPSN 77
E L IA + + GYL P + + + N + FY F F+
Sbjct: 61 EGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDSGFFCEE 113
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma
chain {Cow (Bos taurus) [TaxId: 9913]}
Length = 54
Score = 35.8 bits (83), Expect = 3e-04
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 16/53 (30%)
Query: 201 LEAIKKEITSLKI---------------YINYYEQYCEYDPFFTP-TELANPW 237
+ +K + LK+ + Y E + + DP TP NP+
Sbjct: 2 IAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF 54
>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 120
Score = 36.5 bits (84), Expect = 8e-04
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 11/52 (21%)
Query: 35 EALHIAHLMASHGYLFPIEEHVLTV-----------KNDNTFYRFQTPYFWP 75
EA+ +A ++ +L P+ + + Y F Y
Sbjct: 58 EAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAESYKKK 109
>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 34.9 bits (80), Expect = 0.003
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 34 AEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRFQTPYFWPSNCWEPE 82
+A+ + ++ G L +++ ++ FYRF + E
Sbjct: 59 TQAVGMWQVLLEDGVLNHVDQE-RHFQDKYLFYRFLDDEREDAPLPTEE 106
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 26.9 bits (59), Expect = 3.3
Identities = 12/102 (11%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 58 TVKNDNTFYRFQTPYFWPSNCWE-PENTDYAVYLCKRTMQNKTRLELADYEAENLALLQK 116
V+ + T+Y + + + P + + V ++ + E D + + ++
Sbjct: 41 IVELNFTYYTQPSWRSFVQMLRKTPPDFYFTVKTP-GSVTHVLWKEGKDPKEDMENFTRQ 99
Query: 117 M----FSRKWEFIFMQAEAQSKVDKKRDKLERKVLDSQERAF 154
+ ++ + Q K +K + K+ +S
Sbjct: 100 IEPLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYPYEL 141
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 127
Score = 25.6 bits (56), Expect = 4.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 35 EALHIAHLMASHGYLFPIEEHVLTV 59
A+H AHL+ HG + ++E LT+
Sbjct: 15 LAIHTAHLIQPHGLVVVLQEPDLTI 39
>d1s6la2 d.357.1.2 (A:81-212) Alkylmercury lyase MerB {Escherichia
coli [TaxId: 562]}
Length = 132
Score = 25.6 bits (56), Expect = 4.9
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 222 CEYDPFFTPTELANPWLTDNPEF 244
C + FF A W + +
Sbjct: 79 CCHVHFFASVPTAEDWASKHQGL 101
>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes
sloani pacificus) [TaxId: 6634]}
Length = 75
Score = 24.6 bits (53), Expect = 5.8
Identities = 8/60 (13%), Positives = 14/60 (23%)
Query: 34 AEALHIAHLMASHGYLFPIEEHVLTVKNDNTFYRFQTPYFWPSNCWEPENTDYAVYLCKR 93
AE + + E T Y P ++ A +L +
Sbjct: 14 AELCRFVLAAHGEEFTDRVVEMADWPNLKATMYSNAMPVLDIDGTKMSQSMCIARHLARE 73
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 26.1 bits (57), Expect = 6.4
Identities = 10/76 (13%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 199 SHLEAIKKEITSLKIYINYYEQYCEYDPFFTPTELANPWLTDNPEFWDEEKQAKEISARR 258
+ ++ + + L+ Y++Y + + E+ + P+ W+E ++A+ + R
Sbjct: 6 NRIQDLTERSDVLRGYLDYDAKKERLE------EVNA--ELEQPDVWNEPERAQALGKER 57
Query: 259 --IKRWAFSLQELLKD 272
++ +L ++ +
Sbjct: 58 SSLEAVVDTLDQMKQG 73
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 24.4 bits (53), Expect = 8.4
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 126 FMQAEAQSKVDKKRDKLERKVLDSQERA 153
+Q +K KR L K+ +RA
Sbjct: 45 LLQVLKGTKESSKRCVLRTKISGYMDRA 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.410
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,167,340
Number of extensions: 54071
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 21
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)