RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10899
(218 letters)
>gnl|CDD|218243 pfam04752, ChaC, ChaC-like protein. The ChaC protein is thought to
be associated with the putative ChaA Ca2+/H+ cation
transport protein in Escherichia coli. Its function is
not known. This family also includes homologues regions
from several other bacterial and eukaryotic proteins.
Length = 178
Score = 92.0 bits (229), Expect = 2e-23
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 20/136 (14%)
Query: 27 TRSIVWGRAFLVSGKSA---VPYLHTREGTLGGYKTSFEQFYPKDHSDQSSSSEDGLSET 83
WG A+ V G+ A + YL RE GY+T FYP+
Sbjct: 56 EEGRCWGVAYRVPGEEAEEVLEYLDVREKV-NGYETESVPFYPRLDVG------------ 102
Query: 84 SQPI--RTMMFIACPTNSMWLGEAPLHEIANQIVSCKGPSGHNAEYVLRLAIFMRENIPD 141
++P+ R ++++A P N +LG APL EIA QI + GPSG NAEY+ LA +R P+
Sbjct: 103 TEPVVLRALVYVATPKNPQYLGPAPLEEIAAQIATAVGPSGPNAEYLFNLAKHLRALGPE 162
Query: 142 AHVHDPELFTLEIMIR 157
+ D L LE ++R
Sbjct: 163 --IRDDHLEELEELVR 176
>gnl|CDD|226226 COG3703, ChaC, Uncharacterized protein involved in cation transport
[Inorganic ion transport and metabolism].
Length = 190
Score = 35.8 bits (83), Expect = 0.007
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 21/135 (15%)
Query: 31 VWGRAFLVSGK---SAVPYLHTREGTLGGYKTSFEQFYPKDHSDQSSSSEDGLSETSQPI 87
G A+ + + YL RE ++ P E G
Sbjct: 69 CEGVAYRIPEAHAEEVLEYLREREMNYTL--VYVPRWLP-------VELEGGRRVN---- 115
Query: 88 RTMMFIACPTNSMWLGEAPLHEIANQIVSCKGPSGHNAEYVLRLAIFMRENIPDAHVHDP 147
++F+ + + G+ +IA I + G SG NAEY+ +R+ + D
Sbjct: 116 -ALVFVGDRKHPQYAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTLQHLRKL----GIRDH 170
Query: 148 ELFTLEIMIRSRLKE 162
L L ++ + L E
Sbjct: 171 NLEDLLELVAALLAE 185
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and
gelsolin-like domains. Actin depolymerization
factor/cofilin-like domains are present in a family of
essential eukaryotic actin regulatory proteins; these
proteins enhance the turnover rate of actin and
interact with actin monomers as well as actin
filaments.
Length = 97
Score = 28.2 bits (63), Expect = 1.3
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 3 CLLAWSGGNSSTRTRVRYFGHILSTRSIVWGRAFLVSG 40
++W S + ++ Y + + + ++G A V
Sbjct: 56 VFISWIPDGVSIKQKMVYATNKQTLKEALFGLAVPVQI 93
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 28.9 bits (65), Expect = 1.7
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 153 EIMIRSRLKEKKIPLHVIMGEEAPSDSTSNASSSYQDDLDV---RPVSRRSFDFTARL 207
E M+ L++ +P I P +D+DV R VS+ ++ARL
Sbjct: 12 EKMLIEELEKLGLPYRKIYVPALP--LPFGERPKELEDVDVAIIRCVSQSRALYSARL 67
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 27.7 bits (62), Expect = 4.7
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 107 LHEIANQIVSCKGPSGHNAEYVLRLAIFMRENIPDAHVHDPELFTLEIMIRSRLKEKKI- 165
L +I S GP +AE +LA N+ AHV E LE++ ++ K K+
Sbjct: 117 LMRTFLEIASRGGPVMVHAERAAQLAEEAGANVHIAHVSSGE--ALELIKFAKNKGVKVT 174
Query: 166 ----PLHVIMGEEAPSDSTSNASSSYQDDLDVRPVSRRSFD 202
P H+ + +S + ++ V P R D
Sbjct: 175 CEVCPHHLFL-----DESMLRLNGAW---GKVNPPLRSKED 207
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional.
Length = 938
Score = 28.0 bits (62), Expect = 5.2
Identities = 13/67 (19%), Positives = 22/67 (32%)
Query: 74 SSSEDGLSETSQPIRTMMFIACPTNSMWLGEAPLHEIANQIVSCKGPSGHNAEYVLRLAI 133
TS R+ + + G P+ + + + SG AEY +A
Sbjct: 21 LLGTRLSRCTSDTARSSTTLLPLLRTRSTGVIPVISLQSSASATVSASGFLAEYEAHVAE 80
Query: 134 FMRENIP 140
+E I
Sbjct: 81 RAQEGIA 87
>gnl|CDD|181542 PRK08733, PRK08733, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 306
Score = 27.2 bits (60), Expect = 7.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 18 VRYFGHILSTRSIVWGRAFLVSGKSAVPYLHTREG 52
V +FGH ST + A L +G + VPY H REG
Sbjct: 213 VPFFGHPASTITATHQLARL-TGCAVVPYFHRREG 246
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.397
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,755,284
Number of extensions: 961387
Number of successful extensions: 746
Number of sequences better than 10.0: 1
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 10
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)