RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10899
         (218 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 30/252 (11%), Positives = 69/252 (27%), Gaps = 88/252 (34%)

Query: 25  LSTRSIVWGRAFLVSGKSA----VPY-LHTREGTLGGYKTSFEQFYPKDHSDQSSSSEDG 79
            STR +      L  G       VP         L   +  F +  P + ++  ++ +  
Sbjct: 4   YSTRPLT-----LSHGSLEHVLLVPTASFFIASQL---QEQFNKILP-EPTEGFAADD-- 52

Query: 80  LSETSQPI----RTMMFIACPT-------------------NSMWLGEAPLHEIANQIVS 116
             E + P     + + +++                       + +L    +H +A +++ 
Sbjct: 53  --EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110

Query: 117 CKGPSGHNAEYVLR--LAIFMRENIPDAHVHDPELFTLEIMIRSRLKEKKIPLHVIMG-- 172
               +    + +++  +   +    P     +  LF         + E    L  I G  
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR-------AVGEGNAQLVAIFGGQ 163

Query: 173 -------EE--------AP----------------SDSTSNASSSYQDDLDVR-----PV 196
                  EE                            +T +A   +   L++      P 
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223

Query: 197 SRRSFDFTARLP 208
           +    D+   +P
Sbjct: 224 NTPDKDYLLSIP 235



 Score = 34.6 bits (79), Expect = 0.021
 Identities = 31/179 (17%), Positives = 49/179 (27%), Gaps = 88/179 (49%)

Query: 20   YF-GHILSTRSIVWG--RAFLVSG------KSAVPYLHTREGTLGGYKTSFEQFYPKDHS 70
             F GH     S+  G   A L S       +S V  +  R G         +   P+D  
Sbjct: 1758 TFAGH-----SL--GEYAA-LASLADVMSIESLVEVVFYR-GMT------MQVAVPRD-- 1800

Query: 71   DQSSSSEDGLSETSQPIRTMMFIACPTNSM--WLGEAPLH--------------EIAN-- 112
                  E G S        M+  A     +     +  L               EI N  
Sbjct: 1801 ------ELGRSNYG-----MI--AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847

Query: 113  ----QIVSCKGPSGHNAEYVLRLAIFMRENIPDAHVHDPELFTLEIMIRSRLKEKKIPL 167
                Q V+    +G         A+              +  T  ++  + +K +KI +
Sbjct: 1848 VENQQYVA----AGDLR------AL--------------DTVT-NVL--NFIKLQKIDI 1879



 Score = 33.5 bits (76), Expect = 0.053
 Identities = 32/158 (20%), Positives = 41/158 (25%), Gaps = 51/158 (32%)

Query: 31   VWGRAFLVSGKSAVPYLHTREGTLGGYKTSFEQFYPKD---HSDQSSSSEDGLSETSQPI 87
            VW RA            H ++ T G          P +   H         G  E  + I
Sbjct: 1645 VWNRA----------DNHFKD-TYGFSILDIVINNPVNLTIH-------FGG--EKGKRI 1684

Query: 88   R----TMMFIACPTNSMWLGEAPLHEIANQIVSC--KGPSGHNAEYVLRLAIFMRENIPD 141
            R     M+F       +   E    EI     S   +   G     +L    F       
Sbjct: 1685 RENYSAMIFETIVDGKLKT-EKIFKEINEHSTSYTFRSEKG-----LLSATQF------- 1731

Query: 142  AHVHDPELFTLEIMIRSRLKEK-KIPLHVIM-----GE 173
                 P L  +E      LK K  IP          GE
Sbjct: 1732 TQ---PALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766


>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
           35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A
           {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
          Length = 1003

 Score = 29.8 bits (66), Expect = 0.73
 Identities = 9/62 (14%), Positives = 18/62 (29%)

Query: 32  WGRAFLVSGKSAVPYLHTREGTLGGYKTSFEQFYPKDHSDQSSSSEDGLSETSQPIRTMM 91
           +      S  S+ P        +  Y        P    D   S     +  + P R ++
Sbjct: 862 FTHGPSSSSSSSSPLDGIAHAGIAFYAAKLPLHLPAQEYDIPLSFVFDNATAAAPYRALL 921

Query: 92  FI 93
           ++
Sbjct: 922 YV 923


>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
           {Saccharomyces cerevisiae}
          Length = 369

 Score = 27.2 bits (61), Expect = 4.4
 Identities = 7/30 (23%), Positives = 8/30 (26%)

Query: 178 DSTSNASSSYQDDLDVRPVSRRSFDFTARL 207
                     Q+  DV   S     F AR 
Sbjct: 270 LKEFIILGGGQEAKDVTTTSANEGKFEARF 299


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0776    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,180,500
Number of extensions: 175214
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 5
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)