RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10899
         (218 letters)



>d2r7ca2 d.216.1.1 (A:2-143) Rotavirus NSP2 fragment, N-terminal
           domain {Simian 11 rotavirus [TaxId: 10923]}
          Length = 142

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 82  ETSQPIRTMMFIACPTNSMWLGEAPLHEIANQIVSCKGPSGHNAEYVLRLAIFMRENIPD 141
           ET    +  M I    NS+ + +A +  + +++VS +    H    V+R     +EN  D
Sbjct: 72  ETIMFTKVAMLICEALNSLKVTQANVSNVLSRVVSIR----HLENLVIR-----KENPQD 122

Query: 142 AHVHDPELFTLEIMI 156
              H  +L     +I
Sbjct: 123 ILFHSKDLLLKSTLI 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 776,102
Number of extensions: 32921
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)