BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1090
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis
thaliana GN=PKL PE=1 SV=1
Length = 1384
Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 8/159 (5%)
Query: 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYG 63
++ D K+ + IA + EE L P+L++ PLS L NWE EF +AP + V Y+G
Sbjct: 295 ILADEMGLGKTIQSIALLASLFEEN-LIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFG 353
Query: 64 NAIERKALQSEALSLPTIKV------PAKKGKTKKQISLKLPLILVTTPQIIENDFGFLK 117
A R ++ L + + KQ +K +L+T+ ++I D LK
Sbjct: 354 TAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFD-VLLTSYEMINLDSAVLK 412
Query: 118 KITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
I W C+IVDEGH +KNK SKL LT + ++LLTG
Sbjct: 413 PIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTG 451
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5
PE=2 SV=1
Length = 1954
Score = 86.3 bits (212), Expect = 9e-17, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
DT++ D K+ + I F + +E + P L+ PLS + NWE EF +AP V
Sbjct: 720 DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVT 779
Query: 61 YYGNAIERKALQSEALSLP--TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKK 118
Y G+ R ++ S I+ K + KK++ +K +L+T+ ++I D L
Sbjct: 780 YTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFH-VLLTSYELITIDQAILGS 838
Query: 119 ITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
I W C++VDE H +KN +SK L + + +K+LLTG
Sbjct: 839 IEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 876
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4
PE=1 SV=1
Length = 1915
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
DT++ D K+ + F + +E + P L+ PLS + NWE EF +AP + V
Sbjct: 739 DTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVT 798
Query: 61 YYGNAIERKALQSEALSLP--TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKK 118
Y G+ R ++ S I+ K + KK+ S+K +L+T+ ++I D L
Sbjct: 799 YVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFH-VLLTSYELITIDMAILGS 857
Query: 119 ITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
I W C+IVDE H +KN +SK L K+LLTG
Sbjct: 858 IDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTG 895
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4
PE=1 SV=2
Length = 1912
Score = 83.6 bits (205), Expect = 5e-16, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
DT++ D K+ + F + +E + P L+ PLS + NWE EF +AP + V
Sbjct: 746 DTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVT 805
Query: 61 YYGNAIERKALQSEALSLP--TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKK 118
Y G+ R ++ S I+ K + KK+ S+K +L+T+ ++I D L
Sbjct: 806 YVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFH-VLLTSYELITIDMAILGS 864
Query: 119 ITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
I W C+IVDE H +KN +SK L K+LLTG
Sbjct: 865 IDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTG 902
>sp|Q86WJ1|CHD1L_HUMAN Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens
GN=CHD1L PE=1 SV=2
Length = 897
Score = 83.6 bits (205), Expect = 6e-16, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 19/154 (12%)
Query: 4 VIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTVKYY 62
++ D K+ + IA F + E P LI+CPLSVL+NW+ E ++FAP + V Y
Sbjct: 68 ILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYA 127
Query: 63 GNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWN 122
G+ ER LQ + K++ +L+TT +I D FLK W+
Sbjct: 128 GDKEERACLQQD---------------LKQESRFH---VLLTTYEICLKDASFLKSFPWS 169
Query: 123 CIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
++VDE H +KN+ S L L+ F +LLTG
Sbjct: 170 VLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTG 203
>sp|P31380|FUN30_YEAST ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FUN30 PE=1 SV=1
Length = 1131
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 20/159 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
M ++ D K+ +VI+FF + + P+L+V P S L NW EF+KFAP ++
Sbjct: 591 MSCILADDMGLGKTCQVISFFAYLKQINEPGPHLVVVPSSTLENWLREFQKFAPALKIEP 650
Query: 61 YYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIEN---DFGFLK 117
YYG+ ER+ L+ + GK ++VTT + D FLK
Sbjct: 651 YYGSLQEREELRD--------ILERNAGKYD---------VIVTTYNLAAGNKYDVSFLK 693
Query: 118 KITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
+N ++ DEGH +KN S+ KL +RA F++LLTG
Sbjct: 694 NRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTG 732
>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus
GN=Chd1l PE=2 SV=1
Length = 900
Score = 83.2 bits (204), Expect = 7e-16, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 32 PNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTIKVPAKKGKTK 91
P L++CPLSVL+NW+ E +FAP + V Y G+ ER LQ + V
Sbjct: 91 PFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDLRQESGFHV-------- 142
Query: 92 KQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFK 151
L+TT +I D FLK +W+ + VDE H +KN+ S L L+ A F+
Sbjct: 143 ----------LLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFR 192
Query: 152 VLLTG 156
+LLTG
Sbjct: 193 LLLTG 197
>sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus
GN=CHD1L PE=2 SV=1
Length = 897
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 19/154 (12%)
Query: 4 VIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTVKYY 62
++ D K+ + IA F + E P LI+CPLSVL+NW+ E +FAP + V Y
Sbjct: 70 ILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYA 129
Query: 63 GNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWN 122
G+ +R LQ + K++ +L+TT +I D FLK W+
Sbjct: 130 GDKDKRACLQQD---------------LKQESRFH---VLLTTYEICLKDASFLKSFPWS 171
Query: 123 CIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
++VDE H +KN+ S L L+ F +LLTG
Sbjct: 172 VLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTG 205
>sp|O74842|FFT2_SCHPO ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft2 PE=1 SV=1
Length = 1284
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 20/159 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
+ ++ D K+ +V+AFF ++E+ P+L+V P S L NW E +F P +R
Sbjct: 569 LSGILADEMGLGKTCQVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELARFCPSLRVEP 628
Query: 61 YYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIEN---DFGFLK 117
YYG+ ER ++ EA+ IK ILVTT Q+ N D FLK
Sbjct: 629 YYGSQQERANIR-EAIEENEIKYD----------------ILVTTYQLATNNKEDRSFLK 671
Query: 118 KITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
++ + DEGH +KN+ S+ L L A F++LLTG
Sbjct: 672 HQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTG 710
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3
PE=1 SV=3
Length = 2000
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
DT++ D K+ + I F + +E + P L+ PLS + NWE EF+ +AP V
Sbjct: 756 DTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVT 815
Query: 61 YYGNAIERKALQSEALSLP--TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKK 118
Y G+ R ++ S IK K K K++ +K +L+T+ ++I D L
Sbjct: 816 YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-VLLTSYELITIDQAALGS 874
Query: 119 ITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
I W C++VDE H +KN +SK L + K+LLTG
Sbjct: 875 IRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 912
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 21/158 (13%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + I+ + E + + P L++ PLS L+NW +EF K+AP +RT+
Sbjct: 786 LNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTI 845
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
+ G+ ERKA Q++ + G+ +++TT + I + L K+
Sbjct: 846 SFKGSPNERKAKQAK----------IRAGEFD---------VVLTTFEYIIKERALLSKV 886
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTG 156
W +I+DEGH +KN +SKLS+ L T A ++++LTG
Sbjct: 887 KWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTG 924
>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf22 PE=1 SV=2
Length = 1680
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 21/158 (13%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IAF +IE++ + P LI+ PLS L NW EF K+AP V+ +
Sbjct: 888 LNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKI 947
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G RK LQS QI +L+TT + I D L +I
Sbjct: 948 AYKGPPQLRKTLQS-------------------QIRSSNFNVLLTTFEYIIKDRPLLSRI 988
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTG 156
W +I+DEGH +KN +SKL+ L T + ++++LTG
Sbjct: 989 KWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTG 1026
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2
Length = 821
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
++ ++ D K+ + IA +I+ P L+ PLS L NW AEF++F P + T+
Sbjct: 225 INGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTLL 284
Query: 61 YYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKIT 120
Y+G +R+ L K K+Q +L++ ++VT+ +I D L+
Sbjct: 285 YHGTREDRRKLV--------------KNIHKRQGTLQIHPVVVTSFEIAMRDQNALQHCY 330
Query: 121 WNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYPNKWSKQCTL 169
W +IVDEGH +KN K +L +L A K+LLTG N S+ +L
Sbjct: 331 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSL 379
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mot1 PE=1 SV=4
Length = 1953
Score = 77.0 bits (188), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 21/125 (16%)
Query: 32 PNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTIKVPAKKGKTK 91
P+LIVCP ++ +W+ E +APF++ Y G ER ++S+
Sbjct: 1420 PSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSK----------------- 1462
Query: 92 KQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFK 151
+K ++VT+ I ND L KI WN ++DEGH +KN ++KL+ + +LR+ +
Sbjct: 1463 ----MKKSDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHR 1518
Query: 152 VLLTG 156
++L+G
Sbjct: 1519 LILSG 1523
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
++ ++ D K+ + IA +I+ P L+ PLS L NW AEF++F P + T+
Sbjct: 242 INGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTML 301
Query: 61 YYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKIT 120
Y+G ER+ L + K++ +L++ +++T+ +I D L+
Sbjct: 302 YHGTQEERQKLV--------------RNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCY 347
Query: 121 WNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYPNKWSKQCTL 169
W +IVDEGH +KN K +L +L A K+LLTG N S+ +L
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSL 396
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + I F +I P LI+ PLS + NWE EFR + + + Y
Sbjct: 481 NCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTE-MNAIVY 539
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ I R+ +Q + + G K + ++TT ++I D LKKI W
Sbjct: 540 HGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHV-------VITTFEMILADCPELKKIHW 592
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
+C+I+DE H +KN+ KL L + KVLLTG
Sbjct: 593 SCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTG 627
>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
PE=1 SV=2
Length = 2897
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + I F +I+ P LI+ PLS + NWE EFR + + V Y
Sbjct: 880 NCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTD-INVVVY 938
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ I R+ +Q + + +G + Q ++TT ++I G L I W
Sbjct: 939 HGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQA-------IITTFEMILGGCGELNAIEW 991
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+I+DE H +KNK KL L + KVLLTG
Sbjct: 992 RCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTG 1026
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 22/132 (16%)
Query: 25 IEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTIKVP 84
+E +AL P+LI+CP S+ +WE EF ++APF++ V Y G PT+++
Sbjct: 1328 VESRAL-PSLIICPPSLTGHWENEFDQYAPFLKVVVYAGG--------------PTVRLT 1372
Query: 85 AKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLT 144
+ L I+VT+ + ND L K +N ++DEGH +KN +SKL+ +
Sbjct: 1373 LRP-------QLSDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVK 1425
Query: 145 ALRATFKVLLTG 156
+ A +++LTG
Sbjct: 1426 EITANHRLILTG 1437
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + I F +I+ P LI+ PLS + NWE EFR + + V Y
Sbjct: 879 NCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTD-INVVVY 937
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ I R+ +Q + + +G + Q ++TT ++I G L I W
Sbjct: 938 HGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQA-------IITTFEMILGGCGELNAIDW 990
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+I+DE H +KNK KL L + KVLLTG
Sbjct: 991 RCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTG 1025
>sp|Q7ZU90|CHD1L_DANRE Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio
GN=chd1l PE=2 SV=1
Length = 1026
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 32 PNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTIKVPAKKGKTK 91
P L++CPL+VL NW E +F P + + Y G+ +R LQ S P V
Sbjct: 86 PFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNLKSDPRFHV-------- 137
Query: 92 KQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFK 151
L+TT ++ D +LK W ++VDE H +KN++S L L F+
Sbjct: 138 ----------LLTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFR 187
Query: 152 VLLTG 156
VLLTG
Sbjct: 188 VLLTG 192
>sp|Q5ARK3|SWR1_EMENI Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2
Length = 1698
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 19/157 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKI-IEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IA + +E P+L+V P SV+ NWE EF+K+ P + +
Sbjct: 844 INGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIM 903
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
YYGN ER+ K + + +L+T+ Q++ D LK+
Sbjct: 904 TYYGNQEERRQ------------------KRRGWMDDNSWNVLITSYQLVLQDQQVLKRR 945
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
+W+ +I+DE H++KN +S+ L R ++LLTG
Sbjct: 946 SWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTG 982
>sp|Q4WAS9|SWR1_ASPFU Helicase swr1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293
/ CBS 101355 / FGSC A1100) GN=swr1 PE=3 SV=1
Length = 1695
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 19/157 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKI-IEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IA + +E + P+L+V P SV+ NWE EF+K+ P + +
Sbjct: 849 INGILADEMGLGKTIQTIALLAHLAVEHEVWGPHLVVVPTSVILNWEMEFKKWCPGFKIM 908
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
YYG+ ER+ +KG T S +L+T+ Q++ D LK+
Sbjct: 909 TYYGSIEERRQ--------------KRKGWT-DDTSWN---VLITSYQLVLQDQQVLKRR 950
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
W+ +++DE H++KN +S+ L R ++LLTG
Sbjct: 951 NWHYMVLDEAHNIKNFRSQKWQTLLTFRTRARLLLTG 987
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog
OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 2/157 (1%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
+DT++ D K+ + + F + +E P L+ PLS L NWE EF +AP +
Sbjct: 749 IDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCI 808
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G+ R ++ LS + K + K +L+T+ ++I D L I
Sbjct: 809 TYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFN-VLLTSYELISMDAACLGSI 867
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
W ++VDE H +K+ +SK L + +K+LLTG
Sbjct: 868 DWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTG 904
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IA ++E + L P LI+ PLS L+NW EF K+AP V +
Sbjct: 743 LNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKI 802
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G R++L +P + + GK +L+TT + I D L KI
Sbjct: 803 SYKGTPAMRRSL------VPQL----RSGKFN---------VLLTTYEYIIKDKHILAKI 843
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTGWYYPNK 162
W +IVDEGH +KN KL+ L T A ++LLTG NK
Sbjct: 844 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 887
>sp|O42861|FFT3_SCHPO ATP-dependent helicase fft3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft3 PE=1 SV=1
Length = 922
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYG 63
++ D K+ + IAFF ++++ P+L++ P S + NW EF KF P ++ YYG
Sbjct: 409 ILADEMGLGKTCQTIAFFSLLMDKNINGPHLVIAPASTMENWLREFAKFCPKLKIELYYG 468
Query: 64 NAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNC 123
+ +ER+ ++ S K + L + T+ + D FL+ +N
Sbjct: 469 SQVEREEIRERINS----------NKDSYNVMLTTYRLAATS----KADRLFLRNQKFNV 514
Query: 124 IIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
+ DEGH +KN+ S+ L ++ A F+VLLTG
Sbjct: 515 CVYDEGHYLKNRASERYRHLMSIPADFRVLLTG 547
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IA ++E + L P LI+ PLS L+NW EF K+AP V +
Sbjct: 748 LNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKI 807
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G R++L +P + + GK +L+TT + I D L KI
Sbjct: 808 SYKGTPAMRRSL------VPQL----RSGKFN---------VLLTTYEYIIKDKHILAKI 848
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTGWYYPNK 162
W +IVDEGH +KN KL+ L T A ++LLTG NK
Sbjct: 849 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 892
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 73.2 bits (178), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IA ++E + + P LI+ PLS L+NW EF K+AP V V
Sbjct: 773 LNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKV 832
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G+ R+A +P + + GK +L+TT + I D L KI
Sbjct: 833 SYKGSPAARRAF------VPQL----RSGKFN---------VLLTTYEYIIKDKHILAKI 873
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTGWYYPNK 162
W +IVDEGH +KN KL+ L T A ++LLTG NK
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
PE=3 SV=2
Length = 2511
Score = 73.2 bits (178), Expect = 8e-13, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + IA ++ P +I+ PLS + NWE EF + + + Y
Sbjct: 867 NCILADEMGLGKTIQSIALLSEMFSAGVQSPFMIIAPLSTITNWEREFSNWTD-MNAIVY 925
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ R+ +Q + K G K L+TT ++I +D L++I+W
Sbjct: 926 HGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDA-------LITTFEMILSDCPELREISW 978
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+++DE H +KN+ KL L L KVLLTG
Sbjct: 979 RCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTG 1013
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 72.8 bits (177), Expect = 9e-13, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 3 TVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
T++ D K+ + + F + +E P LI PLS L NWE E +AP + V Y
Sbjct: 288 TILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTY 347
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
G R ++ +S + K + Q K ++L T+ + I D FL I W
Sbjct: 348 VGGKTARAVIRKHEISFEEVTT---KTMRENQTQYKFNVML-TSYEFISVDAAFLGCIDW 403
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
++VDE H +++ +SK L+ R +K+LLTG
Sbjct: 404 AALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTG 438
>sp|Q9P793|MIT1_SCHPO Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mit1 PE=1 SV=1
Length = 1418
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYG 63
++ D K+ +VI+F + P L++ P + + NWE E +K+APF++ G
Sbjct: 578 ILADEMGLGKTVQVISFISVLFYRHKCFPVLVIVPHATVANWERELKKWAPFLQINVLVG 637
Query: 64 NAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNC 123
+ R ++ L K K +S +LV + +E + L+K W
Sbjct: 638 SEKNRSLVRDYRLI---------NQKDPKHVSTH---VLVISASNVEREISLLRKFQWKV 685
Query: 124 IIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
+IVDEG +KN +S L L+++++ FK+LLTG
Sbjct: 686 LIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTG 718
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IA ++E + + P LI+ PLS L+NW EF K+AP V V
Sbjct: 773 LNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKV 832
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G+ R+A +P + + GK +L+TT + I D L KI
Sbjct: 833 SYKGSPAARRAF------VPQL----RSGKFN---------VLLTTYEYIIKDKHILAKI 873
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTGWYYPNK 162
W +IVDEGH +KN KL+ L T A ++LLTG NK
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IA ++E + + P LI+ PLS L+NW EF K+AP V V
Sbjct: 773 LNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKV 832
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G+ R+A +P + + GK +L+TT + I D L KI
Sbjct: 833 SYKGSPAARRAF------VPQL----RSGKFN---------VLLTTYEYIIKDKHILAKI 873
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTGWYYPNK 162
W +IVDEGH +KN KL+ L T A ++LLTG NK
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
Length = 1606
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + IA ++E + + P LI+ PLS L+NW EF K+AP V V
Sbjct: 765 LNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKV 824
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G+ R+A +P + + GK +L+TT + I D L KI
Sbjct: 825 SYKGSPAARRAF------VPQL----RSGKFN---------VLLTTYEYIIKDKHILAKI 865
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTGWYYPNK 162
W +IVDEGH +KN KL+ L T A ++LLTG NK
Sbjct: 866 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 909
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7
PE=1 SV=1
Length = 2986
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + I F +I + P L++ PLS + NWE EFR + + V Y
Sbjct: 978 NCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTE-LNVVVY 1036
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ R+ +Q + + KG K ++TT ++I D L+ I W
Sbjct: 1037 HGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHA-------IITTFEMILTDCPELRNIPW 1089
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+++DE H +KN+ KL L + KVLLTG
Sbjct: 1090 RCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTG 1124
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7
PE=1 SV=3
Length = 2997
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + I F +I + P L++ PLS + NWE EFR + + V Y
Sbjct: 988 NCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTE-LNVVVY 1046
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ R+ +Q + + KG K ++TT ++I D L+ I W
Sbjct: 1047 HGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHA-------IITTFEMILTDCPELRNIPW 1099
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+++DE H +KN+ KL L + KVLLTG
Sbjct: 1100 RCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTG 1134
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7
PE=2 SV=1
Length = 3011
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + I F +I + P L++ PLS + NWE EFR + + V Y
Sbjct: 989 NCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTE-LNVVVY 1047
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ R+ +Q + + KG K ++TT ++I D L+ I W
Sbjct: 1048 HGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHA-------IITTFEMILTDCPELRNIPW 1100
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+++DE H +KN+ KL L + KVLLTG
Sbjct: 1101 RCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTG 1135
>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1
SV=2
Length = 1638
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 21/164 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIE-EQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + I+ +++ ++ + P LI+ PLS L NW EF K+AP V V
Sbjct: 792 LNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVV 851
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G+ R+ LQ++ + TK +L+TT + + D L KI
Sbjct: 852 SYKGSPQGRRLLQNQMRA------------TKFN-------VLLTTYEYVIKDKAVLAKI 892
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLTGWYYPNK 162
W +I+DEGH +KN KL+ L T A +++LLTG NK
Sbjct: 893 QWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNK 936
>sp|O13682|SWR1_SCHPO Helicase swr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=swr1 PE=3 SV=1
Length = 1288
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 19/154 (12%)
Query: 4 VIPDPTRYRKSGKVIAFFCKI-IEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYY 62
++ D K+ + IA + E++ P+LI+ P SV+ NWE EF+KF P + + YY
Sbjct: 469 ILADEMGLGKTIQTIALLAHLACEKENWGPHLIIVPTSVMLNWEMEFKKFLPGFKILTYY 528
Query: 63 GNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWN 122
GN ERK +S T V +T+ Q++ D ++ W
Sbjct: 529 GNPQERKEKRSGWYKPDTWHV------------------CITSYQLVLQDHQPFRRKKWQ 570
Query: 123 CIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
+I+DE H++KN +S+ L A ++LLTG
Sbjct: 571 YMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTG 604
>sp|Q9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1
PE=1 SV=1
Length = 764
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
++ ++ D K+ + I F + P L++ PLS L+NW E +F P + +
Sbjct: 221 LNGILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAII 280
Query: 61 YYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG-FLKKI 119
Y+G+ +R L+ + + K + K P I++T+ ++ ND L+
Sbjct: 281 YHGDKNQRDELRRKHMP--------------KTVGPKFP-IVITSYEVAMNDAKRILRHY 325
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYPNKWSKQCTL 169
W +++DEGH +KN K KL +L L+ K+LLTG N S+ +L
Sbjct: 326 PWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSL 375
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
PE=1 SV=1
Length = 2582
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + IAF ++ P L++ PLS + NWE EF + + T+ Y
Sbjct: 833 NCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTE-MNTIVY 891
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ R+ +Q + + G K L+TT ++I +D L++I W
Sbjct: 892 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA-------LITTFEMILSDCPELREIEW 944
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+I+DE H +KN+ KL L + KVLLTG
Sbjct: 945 RCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTG 979
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis
thaliana GN=At3g06400 PE=2 SV=3
Length = 1055
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + I+ + E + + P+++V P S L NW E R+F P +R V
Sbjct: 208 INGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAV 267
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
K+ GN ER+ ++ + L GK I VT+ ++ + L++
Sbjct: 268 KFLGNPEERRHIREDLLV---------AGKFD---------ICVTSFEMAIKEKTALRRF 309
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
+W II+DE H +KN+ S LS + +++L+TG
Sbjct: 310 SWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITG 346
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 21/158 (13%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALE-PNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + I+ +IE++ P L++ PLS L NW EF ++AP + +
Sbjct: 436 LNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKI 495
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G RKAL Q+ +L+TT + I D L +I
Sbjct: 496 VYKGPPQVRKALHP-------------------QVRHSNFQVLLTTYEYIIKDRPLLSRI 536
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKLTALRAT-FKVLLTG 156
W +I+DEGH +KN +SKL+ LT ++ ++++LTG
Sbjct: 537 KWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTG 574
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
PE=1 SV=5
Length = 2581
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + IAF ++ P L++ PLS + NWE EF + + T+ Y
Sbjct: 831 NCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTE-MNTIVY 889
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ R+ +Q + + G K L+TT ++I +D L++I W
Sbjct: 890 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA-------LITTFEMILSDCPELREIEW 942
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+I+DE H +KN+ KL L + KVLLTG
Sbjct: 943 RCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTG 977
>sp|Q9JIX5|CHD8_RAT Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus
GN=Chd8 PE=1 SV=2
Length = 2581
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKY 61
+ ++ D K+ + IAF ++ P L++ PLS + NWE EF + + T+ Y
Sbjct: 831 NCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTE-MNTIVY 889
Query: 62 YGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITW 121
+G+ R+ +Q + + G K L+TT ++I +D L++I W
Sbjct: 890 HGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA-------LITTFEMILSDCPELREIEW 942
Query: 122 NCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C+I+DE H +KN+ KL L + KVLLTG
Sbjct: 943 RCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTG 977
>sp|Q6CA87|SWR1_YARLI Helicase SWR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SWR1 PE=3 SV=1
Length = 1772
Score = 70.5 bits (171), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 18/131 (13%)
Query: 26 EEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTIKVPA 85
E P+LI+ P SV+ NWE EF++FAP + + YYGN ++R+
Sbjct: 954 EHHIWGPHLIIVPTSVMLNWEMEFKRFAPGFKVMTYYGNPVQRRE--------------K 999
Query: 86 KKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTA 145
++G K+ + +T+ Q++ D ++ W+ +I+DE H++KN +S+ L
Sbjct: 1000 RRGWNKEDTW----HVCITSYQLVLQDLFAFRRKRWHYMILDEAHNIKNFRSQRWQSLLH 1055
Query: 146 LRATFKVLLTG 156
++LLTG
Sbjct: 1056 FNTVRRLLLTG 1066
>sp|Q759G7|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2
Length = 1486
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 19/154 (12%)
Query: 4 VIPDPTRYRKSGKVIAFFCKI-IEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYY 62
++ D K+ + IA + E++ P+LI+ P SVL NWE EF++FAP + + YY
Sbjct: 693 ILADEMGLGKTIQTIALLAYLACEKENWGPHLIIVPTSVLLNWEMEFKRFAPGFKVLSYY 752
Query: 63 GNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWN 122
G+ +RK ++G K L + +T+ Q++ +D K+ W
Sbjct: 753 GSPQQRKE--------------KRRGWNK----LDAFHVCITSYQLVVHDQHSFKRKKWQ 794
Query: 123 CIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
+I+DE H++KN KS L ++LLTG
Sbjct: 795 YMILDEAHNIKNFKSTRWQALLNFNTRRRLLLTG 828
>sp|G5EDG2|SMRCD_CAEEL SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 homolog
OS=Caenorhabditis elegans GN=M03C11.8 PE=3 SV=1
Length = 989
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
++ ++ D K+ +++AF + + P+LIV P S + NW EF K+ P ++ +
Sbjct: 413 LNAILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIVVPSSTIENWIGEFHKWCPSIQLLT 472
Query: 61 YYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKIT 120
YYG+ ERK L+ + K K I + L + T + +D F K +
Sbjct: 473 YYGSQDERKHLRH------------RVKKQKDHIDVILTTYNMVTSK--SDDKKFFKNFS 518
Query: 121 WNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
N +I DEGH +KN S+ L ++ K+LLTG
Sbjct: 519 LNYVIYDEGHMLKNCDSERYRGLMKVKGKKKILLTG 554
>sp|A9X4T1|CHD1_BOMMO Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1
PE=1 SV=1
Length = 1365
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 4 VIPDPTRYRKSGKVIAFFCKIIEEQAL-EPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYY 62
++ D K+ + I F + + Q L P L V PLS + W+ EF+++AP + V Y
Sbjct: 227 ILADEMGLGKTIQTICFLYYLFKSQHLYGPFLCVVPLSTMTAWQREFQQWAPDINVVTYI 286
Query: 63 GNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWN 122
G+ R ++ S + K LK IL TT +I+ D FL+ +W
Sbjct: 287 GDVSSRDIIRQFEWSFSSSK------------RLKFNAIL-TTYEILLKDRQFLRSFSWA 333
Query: 123 CIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
C++VDE H +KN S L L ++L+TG
Sbjct: 334 CLLVDEAHRLKNDDSLLYKALKEFDTNHRLLVTG 367
>sp|P43610|IRC5_YEAST Uncharacterized ATP-dependent helicase IRC5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC5 PE=3
SV=2
Length = 853
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVK 60
++ ++ D K+ + IA I E P L+ PLS L+NW EF KFAP + +K
Sbjct: 241 LNGILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLK 300
Query: 61 YYG-NAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
YYG N + ++ + + K G I++T+ +II D +
Sbjct: 301 YYGTNGYKERSAKLKNF----FKQHGGTG------------IVITSYEIILRDTDLIMSQ 344
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
W +IVDEGH +KN +L +L + + ++LLTG
Sbjct: 345 NWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTG 381
>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STH1 PE=1 SV=1
Length = 1359
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 21/158 (13%)
Query: 1 MDTVIPDPTRYRKSGKVIAFFCKIIE-EQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTV 59
++ ++ D K+ + I+ + E ++ + P L++ PLS + NW EF K+AP + T+
Sbjct: 489 LNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTI 548
Query: 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKI 119
Y G +R +LQ QI + +L+TT + I D L K
Sbjct: 549 IYKGTPNQRHSLQH-------------------QIRVGNFDVLLTTYEYIIKDKSLLSKH 589
Query: 120 TWNCIIVDEGHSVKNKKSKLSIKLTA-LRATFKVLLTG 156
W +I+DEGH +KN +SKLS ++ R +++LTG
Sbjct: 590 DWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTG 627
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,832,415
Number of Sequences: 539616
Number of extensions: 2249155
Number of successful extensions: 5260
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 4876
Number of HSP's gapped (non-prelim): 258
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)