Query psy1090
Match_columns 169
No_of_seqs 119 out of 1261
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 21:26:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 1.4E-37 4.9E-42 254.3 13.8 160 1-169 256-416 (800)
2 1z3i_X Similar to RAD54-like; 100.0 7.3E-36 2.5E-40 239.4 13.0 154 2-169 81-241 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 4.1E-35 1.4E-39 229.1 11.2 141 2-169 58-198 (500)
4 3dmq_A RNA polymerase-associat 100.0 4.7E-30 1.6E-34 213.2 10.5 148 2-169 172-327 (968)
5 1wp9_A ATP-dependent RNA helic 99.9 4.2E-24 1.4E-28 165.0 12.0 140 2-165 25-172 (494)
6 1rif_A DAR protein, DNA helica 99.9 1.2E-21 4.1E-26 142.8 9.7 132 2-161 130-265 (282)
7 2fwr_A DNA repair protein RAD2 99.8 7E-21 2.4E-25 147.7 12.2 121 2-162 110-232 (472)
8 2fz4_A DNA repair protein RAD2 99.8 1.3E-20 4.5E-25 134.2 11.2 122 3-164 111-234 (237)
9 3tbk_A RIG-I helicase domain; 99.8 1.2E-20 4E-25 148.4 10.8 143 2-165 21-181 (555)
10 4a2p_A RIG-I, retinoic acid in 99.8 1.7E-20 5.7E-25 147.7 11.4 142 2-165 24-183 (556)
11 2oca_A DAR protein, ATP-depend 99.8 9.6E-21 3.3E-25 148.2 8.1 131 2-160 130-264 (510)
12 4a2q_A RIG-I, retinoic acid in 99.8 4.6E-20 1.6E-24 151.2 12.3 142 2-165 265-424 (797)
13 2ykg_A Probable ATP-dependent 99.8 9E-20 3.1E-24 147.4 11.9 141 2-163 30-188 (696)
14 4a2w_A RIG-I, retinoic acid in 99.8 4E-20 1.4E-24 153.6 8.8 143 2-166 265-425 (936)
15 3h1t_A Type I site-specific re 99.8 1.7E-20 5.8E-25 149.2 6.3 133 3-166 201-349 (590)
16 4gl2_A Interferon-induced heli 99.8 5E-20 1.7E-24 148.9 6.5 141 2-163 24-196 (699)
17 1t6n_A Probable ATP-dependent 99.8 4E-18 1.4E-22 119.8 11.2 140 2-161 53-203 (220)
18 2gxq_A Heat resistant RNA depe 99.8 5E-18 1.7E-22 118.1 11.4 138 2-160 40-187 (207)
19 3b6e_A Interferon-induced heli 99.8 1E-18 3.5E-23 122.1 6.4 134 2-157 50-216 (216)
20 2pl3_A Probable ATP-dependent 99.8 1.5E-17 5.2E-22 118.0 12.1 137 2-160 64-214 (236)
21 1hv8_A Putative ATP-dependent 99.7 9.8E-18 3.4E-22 125.5 10.5 138 2-161 46-191 (367)
22 2oxc_A Probable ATP-dependent 99.7 2E-17 6.9E-22 117.1 11.3 137 2-160 63-210 (230)
23 1xti_A Probable ATP-dependent 99.7 2.7E-17 9.3E-22 124.3 12.1 140 2-161 47-197 (391)
24 1q0u_A Bstdead; DEAD protein, 99.7 1.1E-17 3.7E-22 117.6 7.9 142 2-165 43-197 (219)
25 1vec_A ATP-dependent RNA helic 99.7 7.4E-17 2.5E-21 112.1 11.9 138 2-160 42-189 (206)
26 3oiy_A Reverse gyrase helicase 99.7 6E-17 2.1E-21 123.6 12.4 141 2-164 38-209 (414)
27 3ber_A Probable ATP-dependent 99.7 7.3E-17 2.5E-21 115.6 11.6 138 2-160 82-229 (249)
28 1wrb_A DJVLGB; RNA helicase, D 99.7 1.1E-16 3.8E-21 114.7 11.7 138 2-160 62-221 (253)
29 1qde_A EIF4A, translation init 99.7 8.3E-17 2.8E-21 113.3 10.6 137 2-160 53-198 (224)
30 3bor_A Human initiation factor 99.7 7.8E-17 2.7E-21 114.6 9.8 139 2-160 69-216 (237)
31 3eiq_A Eukaryotic initiation f 99.7 1.1E-16 3.9E-21 121.7 10.6 139 2-160 79-226 (414)
32 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 7.1E-17 2.4E-21 134.6 9.6 134 2-161 302-441 (1038)
33 2j0s_A ATP-dependent RNA helic 99.7 2.4E-16 8.2E-21 120.0 11.8 138 2-160 76-222 (410)
34 1fuu_A Yeast initiation factor 99.7 1.1E-16 3.8E-21 120.9 9.4 137 2-160 60-205 (394)
35 1s2m_A Putative ATP-dependent 99.7 3.8E-16 1.3E-20 118.4 12.1 138 2-160 60-206 (400)
36 2eyq_A TRCF, transcription-rep 99.7 4.7E-16 1.6E-20 131.4 13.0 136 1-163 625-766 (1151)
37 2z0m_A 337AA long hypothetical 99.7 7.7E-16 2.6E-20 114.0 11.9 133 2-161 33-173 (337)
38 1gm5_A RECG; helicase, replica 99.7 3.2E-16 1.1E-20 127.6 10.2 136 1-163 390-531 (780)
39 3iuy_A Probable ATP-dependent 99.7 7.6E-16 2.6E-20 108.7 10.8 138 2-160 59-210 (228)
40 3ly5_A ATP-dependent RNA helic 99.7 1E-15 3.5E-20 110.4 11.6 138 2-160 93-244 (262)
41 2db3_A ATP-dependent RNA helic 99.6 3.8E-15 1.3E-19 114.6 11.9 138 2-160 95-248 (434)
42 3fe2_A Probable ATP-dependent 99.6 4.1E-15 1.4E-19 106.0 11.0 138 2-160 68-219 (242)
43 3dkp_A Probable ATP-dependent 99.6 3.3E-15 1.1E-19 106.5 10.5 138 2-159 68-221 (245)
44 2i4i_A ATP-dependent RNA helic 99.6 7.4E-15 2.5E-19 111.8 11.9 138 2-160 54-222 (417)
45 3pey_A ATP-dependent RNA helic 99.6 8E-16 2.7E-20 116.1 6.3 134 2-160 46-189 (395)
46 3fht_A ATP-dependent RNA helic 99.6 3E-15 1E-19 113.7 8.3 135 2-160 66-212 (412)
47 3fho_A ATP-dependent RNA helic 99.6 3.5E-15 1.2E-19 116.8 8.9 136 2-160 160-303 (508)
48 3sqw_A ATP-dependent RNA helic 99.5 5.4E-14 1.8E-18 111.7 11.3 138 3-160 63-225 (579)
49 2xgj_A ATP-dependent RNA helic 99.5 5.1E-14 1.8E-18 117.7 10.8 126 2-159 103-234 (1010)
50 3i5x_A ATP-dependent RNA helic 99.5 7E-14 2.4E-18 110.5 11.1 138 3-160 114-276 (563)
51 1oyw_A RECQ helicase, ATP-depe 99.5 2.7E-14 9.3E-19 112.2 8.1 139 2-166 42-192 (523)
52 4ddu_A Reverse gyrase; topoiso 99.5 1.7E-13 6E-18 115.4 12.6 141 2-164 95-266 (1104)
53 4a4z_A Antiviral helicase SKI2 99.5 1.4E-13 4.8E-18 115.0 11.4 128 2-159 56-189 (997)
54 2v1x_A ATP-dependent DNA helic 99.5 9.2E-14 3.1E-18 110.5 9.3 137 2-162 61-214 (591)
55 2zj8_A DNA helicase, putative 99.5 6.8E-14 2.3E-18 113.7 7.9 132 2-159 41-180 (720)
56 3fmp_B ATP-dependent RNA helic 99.5 3.5E-14 1.2E-18 110.3 5.8 134 3-160 134-279 (479)
57 3fmo_B ATP-dependent RNA helic 99.5 4.9E-14 1.7E-18 103.5 6.3 135 2-160 133-279 (300)
58 2p6r_A Afuhel308 helicase; pro 99.5 9.2E-14 3.1E-18 112.6 7.1 132 2-159 42-183 (702)
59 2va8_A SSO2462, SKI2-type heli 99.5 1.7E-13 5.7E-18 111.3 8.3 133 2-159 48-186 (715)
60 3l9o_A ATP-dependent RNA helic 99.4 5.2E-13 1.8E-17 112.6 10.7 126 2-159 201-332 (1108)
61 1gku_B Reverse gyrase, TOP-RG; 99.3 6.4E-12 2.2E-16 105.7 9.6 136 2-161 73-228 (1054)
62 2v6i_A RNA helicase; membrane, 99.3 6.5E-12 2.2E-16 96.5 8.6 126 3-161 5-137 (431)
63 4f92_B U5 small nuclear ribonu 99.2 1.6E-10 5.6E-15 101.0 11.9 133 2-158 944-1093(1724)
64 2z83_A Helicase/nucleoside tri 99.1 1.6E-10 5.6E-15 89.4 8.6 126 3-161 24-156 (459)
65 2jlq_A Serine protease subunit 99.1 2.7E-10 9.2E-15 88.0 8.9 125 4-161 23-154 (451)
66 1yks_A Genome polyprotein [con 99.1 5.9E-10 2E-14 85.8 9.3 126 3-161 11-143 (440)
67 3o8b_A HCV NS3 protease/helica 99.0 5.2E-10 1.8E-14 89.6 8.0 123 3-160 235-362 (666)
68 3llm_A ATP-dependent RNA helic 99.0 9.9E-10 3.4E-14 77.7 8.6 138 3-167 79-227 (235)
69 2wv9_A Flavivirin protease NS2 99.0 2.5E-10 8.7E-15 92.0 5.8 126 3-161 244-376 (673)
70 4f92_B U5 small nuclear ribonu 99.0 9.3E-10 3.2E-14 96.3 8.8 133 2-158 97-254 (1724)
71 2whx_A Serine protease/ntpase/ 99.0 2E-09 6.8E-14 86.1 9.0 126 3-161 189-321 (618)
72 2vl7_A XPD; helicase, unknown 98.8 2.1E-08 7E-13 79.1 8.3 54 3-63 29-83 (540)
73 3crv_A XPD/RAD3 related DNA he 98.8 1.8E-08 6.2E-13 79.6 7.7 57 3-64 25-84 (551)
74 2ipc_A Preprotein translocase 98.6 3.8E-07 1.3E-11 74.9 10.2 127 2-167 94-236 (997)
75 3rc3_A ATP-dependent RNA helic 98.6 2E-07 7E-12 75.2 8.2 118 3-157 158-280 (677)
76 2xau_A PRE-mRNA-splicing facto 98.5 2.5E-07 8.6E-12 75.8 8.3 139 3-165 112-257 (773)
77 1nkt_A Preprotein translocase 98.4 1.2E-06 3.9E-11 72.0 9.7 106 2-133 126-244 (922)
78 1tf5_A Preprotein translocase 98.4 9.3E-07 3.2E-11 72.3 8.9 106 2-133 98-216 (844)
79 2fsf_A Preprotein translocase 98.4 8.8E-07 3E-11 72.4 8.0 106 2-133 89-207 (853)
80 4b3f_X DNA-binding protein smu 98.1 5.2E-06 1.8E-10 66.8 7.2 48 3-52 208-256 (646)
81 3e1s_A Exodeoxyribonuclease V, 98.0 4.2E-05 1.4E-09 60.8 10.0 114 3-163 207-320 (574)
82 2gk6_A Regulator of nonsense t 97.9 0.0001 3.4E-09 59.2 11.2 148 4-161 199-376 (624)
83 1w36_D RECD, exodeoxyribonucle 97.8 0.00016 5.4E-09 57.9 10.0 44 119-164 261-304 (608)
84 2j9r_A Thymidine kinase; TK1, 97.8 0.00018 6.1E-09 49.9 8.6 34 5-40 33-66 (214)
85 2wjy_A Regulator of nonsense t 97.8 0.0002 6.9E-09 59.0 10.2 148 4-161 375-552 (800)
86 2xzl_A ATP-dependent helicase 97.7 0.00043 1.5E-08 57.1 11.8 147 4-161 379-554 (802)
87 2orw_A Thymidine kinase; TMTK, 97.7 7.7E-05 2.6E-09 50.6 6.3 34 4-39 7-40 (184)
88 2b8t_A Thymidine kinase; deoxy 97.6 0.00014 5E-09 50.8 6.6 35 4-40 16-50 (223)
89 3upu_A ATP-dependent DNA helic 97.5 0.00083 2.8E-08 51.9 10.3 39 4-43 49-87 (459)
90 3jux_A Protein translocase sub 97.5 0.00082 2.8E-08 54.7 10.4 59 2-63 90-152 (822)
91 1xx6_A Thymidine kinase; NESG, 97.5 0.00038 1.3E-08 47.5 7.1 34 4-39 12-45 (191)
92 3vkw_A Replicase large subunit 97.5 0.00022 7.6E-09 54.7 6.3 106 5-161 166-272 (446)
93 2orv_A Thymidine kinase; TP4A 97.3 0.0011 3.6E-08 46.6 7.5 34 5-40 24-57 (234)
94 3e2i_A Thymidine kinase; Zn-bi 97.2 0.002 6.8E-08 44.7 8.0 34 5-40 33-66 (219)
95 1w4r_A Thymidine kinase; type 96.9 0.0028 9.7E-08 43.2 6.1 33 5-39 25-57 (195)
96 1l8q_A Chromosomal replication 96.8 0.0073 2.5E-07 44.2 8.8 38 121-158 99-140 (324)
97 1c4o_A DNA nucleotide excision 96.8 0.0026 8.8E-08 51.4 6.5 54 4-62 32-86 (664)
98 4a15_A XPD helicase, ATP-depen 96.6 0.0032 1.1E-07 50.5 5.5 61 3-64 25-88 (620)
99 3eie_A Vacuolar protein sortin 96.6 0.0045 1.5E-07 45.4 5.9 22 2-23 53-74 (322)
100 2z4s_A Chromosomal replication 96.5 0.021 7.3E-07 43.8 9.6 34 3-36 133-166 (440)
101 2o0j_A Terminase, DNA packagin 96.5 0.032 1.1E-06 42.1 10.3 126 5-161 183-316 (385)
102 3lfu_A DNA helicase II; SF1 he 96.4 0.03 1E-06 44.8 10.4 49 4-52 26-77 (647)
103 3syl_A Protein CBBX; photosynt 96.4 0.0025 8.6E-08 46.2 3.7 25 3-27 70-94 (309)
104 2d7d_A Uvrabc system protein B 96.3 0.01 3.6E-07 47.9 6.9 53 5-62 37-90 (661)
105 3cpe_A Terminase, DNA packagin 96.1 0.04 1.4E-06 43.9 9.2 130 5-161 183-316 (592)
106 2qby_B CDC6 homolog 3, cell di 96.0 0.011 3.9E-07 44.0 5.4 37 123-159 136-174 (384)
107 2qp9_X Vacuolar protein sortin 95.6 0.014 4.8E-07 43.5 4.4 23 2-24 86-108 (355)
108 3u61_B DNA polymerase accessor 95.4 0.035 1.2E-06 40.5 6.0 42 120-161 105-148 (324)
109 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.015 5.2E-07 42.7 3.6 22 2-23 47-68 (322)
110 3bos_A Putative DNA replicatio 95.2 0.035 1.2E-06 38.2 5.3 16 120-135 104-119 (242)
111 3dm5_A SRP54, signal recogniti 94.9 0.065 2.2E-06 41.2 6.4 31 5-37 105-135 (443)
112 3kl4_A SRP54, signal recogniti 94.8 0.079 2.7E-06 40.6 6.6 32 4-37 101-132 (433)
113 3vfd_A Spastin; ATPase, microt 94.5 0.04 1.4E-06 41.4 4.4 37 2-43 150-186 (389)
114 1njg_A DNA polymerase III subu 94.5 0.11 3.9E-06 35.4 6.5 22 3-24 48-69 (250)
115 2zan_A Vacuolar protein sortin 94.4 0.022 7.7E-07 43.7 2.7 22 2-23 169-190 (444)
116 3h4m_A Proteasome-activating n 94.3 0.016 5.6E-07 41.4 1.7 21 2-22 53-73 (285)
117 1sxj_D Activator 1 41 kDa subu 94.0 0.042 1.4E-06 40.3 3.6 23 3-25 61-83 (353)
118 3io5_A Recombination and repai 93.6 0.34 1.2E-05 35.7 7.5 41 4-44 32-72 (333)
119 1a5t_A Delta prime, HOLB; zinc 93.6 0.46 1.6E-05 34.8 8.5 23 4-26 28-50 (334)
120 1sxj_B Activator 1 37 kDa subu 93.2 0.13 4.3E-06 37.2 4.9 40 120-159 107-147 (323)
121 2v1u_A Cell division control p 93.2 0.22 7.5E-06 36.8 6.2 23 3-25 47-69 (387)
122 3te6_A Regulatory protein SIR3 93.1 0.94 3.2E-05 33.2 9.3 24 3-26 48-71 (318)
123 2zr9_A Protein RECA, recombina 92.9 0.16 5.6E-06 37.7 5.0 40 4-45 65-104 (349)
124 2q6t_A DNAB replication FORK h 92.7 0.15 5.1E-06 39.1 4.8 46 3-49 203-248 (444)
125 2gno_A DNA polymerase III, gam 92.7 0.5 1.7E-05 34.4 7.3 14 120-133 82-95 (305)
126 3hjh_A Transcription-repair-co 92.7 0.17 5.9E-06 39.3 5.1 50 5-60 19-69 (483)
127 1sxj_A Activator 1 95 kDa subu 92.6 0.19 6.6E-06 39.3 5.4 21 3-23 80-100 (516)
128 1r6b_X CLPA protein; AAA+, N-t 92.5 0.46 1.6E-05 38.9 7.6 23 3-25 210-232 (758)
129 1zu4_A FTSY; GTPase, signal re 92.1 0.64 2.2E-05 34.0 7.3 30 7-38 112-141 (320)
130 4a15_A XPD helicase, ATP-depen 91.9 0.063 2.1E-06 43.1 1.9 38 96-134 174-218 (620)
131 1jr3_A DNA polymerase III subu 91.8 0.39 1.3E-05 35.4 6.0 21 4-24 42-62 (373)
132 2zts_A Putative uncharacterize 91.7 0.41 1.4E-05 33.1 5.7 49 3-52 33-81 (251)
133 2dr3_A UPF0273 protein PH0284; 91.2 0.45 1.5E-05 32.8 5.5 46 4-51 27-72 (247)
134 1byi_A Dethiobiotin synthase; 91.0 0.26 8.8E-06 33.7 4.1 33 4-38 6-38 (224)
135 1qvr_A CLPB protein; coiled co 91.0 0.33 1.1E-05 40.4 5.3 25 2-26 193-217 (854)
136 2w58_A DNAI, primosome compone 91.0 0.24 8.2E-06 33.3 3.8 32 3-36 57-88 (202)
137 2r8r_A Sensor protein; KDPD, P 90.1 0.26 8.8E-06 34.4 3.3 42 3-46 9-52 (228)
138 4b4t_J 26S protease regulatory 90.1 0.12 4.1E-06 39.3 1.8 42 2-48 184-225 (405)
139 3bh0_A DNAB-like replicative h 89.9 0.62 2.1E-05 33.9 5.4 46 3-50 71-116 (315)
140 2qgz_A Helicase loader, putati 89.8 0.33 1.1E-05 35.3 3.9 33 2-36 154-187 (308)
141 2px0_A Flagellar biosynthesis 89.6 2.8 9.4E-05 30.3 8.6 31 6-37 111-141 (296)
142 3u4q_B ATP-dependent helicase/ 89.5 0.44 1.5E-05 41.0 5.0 49 5-53 6-55 (1166)
143 4b4t_M 26S protease regulatory 88.9 0.13 4.4E-06 39.5 1.2 40 2-46 217-256 (434)
144 4b4t_L 26S protease subunit RP 88.7 0.13 4.3E-06 39.6 1.0 41 2-47 217-257 (437)
145 1g3q_A MIND ATPase, cell divis 88.5 0.53 1.8E-05 32.3 4.1 33 4-38 7-39 (237)
146 3fwy_A Light-independent proto 88.4 0.49 1.7E-05 34.6 4.0 27 9-37 57-83 (314)
147 4dzz_A Plasmid partitioning pr 88.0 0.68 2.3E-05 30.9 4.3 42 4-47 6-49 (206)
148 3zq6_A Putative arsenical pump 87.9 0.55 1.9E-05 34.3 4.0 33 4-38 18-50 (324)
149 1cp2_A CP2, nitrogenase iron p 87.6 0.52 1.8E-05 33.1 3.7 29 7-37 8-36 (269)
150 3t15_A Ribulose bisphosphate c 87.6 0.24 8.2E-06 35.7 1.9 35 2-41 38-72 (293)
151 2w0m_A SSO2452; RECA, SSPF, un 87.5 1.8 6.1E-05 29.3 6.3 44 4-49 27-70 (235)
152 3q9l_A Septum site-determining 87.5 0.66 2.3E-05 32.3 4.1 32 4-37 7-38 (260)
153 2ph1_A Nucleotide-binding prot 87.3 0.68 2.3E-05 32.6 4.1 32 4-37 23-54 (262)
154 2r2a_A Uncharacterized protein 87.2 0.33 1.1E-05 33.0 2.3 40 120-159 87-133 (199)
155 4b4t_I 26S protease regulatory 87.2 0.17 5.8E-06 38.7 0.9 42 2-48 218-259 (437)
156 1hyq_A MIND, cell division inh 87.1 0.69 2.3E-05 32.4 4.0 32 4-37 7-38 (263)
157 2afh_E Nitrogenase iron protei 87.1 0.66 2.3E-05 33.1 4.0 29 7-37 9-37 (289)
158 3end_A Light-independent proto 87.1 0.66 2.2E-05 33.4 4.0 29 7-37 48-76 (307)
159 2oze_A ORF delta'; para, walke 87.1 0.66 2.2E-05 33.2 4.0 38 7-46 44-83 (298)
160 4b4t_H 26S protease regulatory 87.1 0.19 6.6E-06 38.8 1.2 40 2-46 245-284 (467)
161 3ec2_A DNA replication protein 86.7 0.81 2.8E-05 30.0 4.0 23 3-25 41-63 (180)
162 4b4t_K 26S protease regulatory 86.6 0.2 6.9E-06 38.3 1.0 40 2-46 208-247 (428)
163 4a1f_A DNAB helicase, replicat 86.4 1.4 4.7E-05 32.6 5.4 45 3-49 49-93 (338)
164 3kjh_A CO dehydrogenase/acetyl 86.4 0.36 1.2E-05 33.3 2.2 30 6-37 6-35 (254)
165 2zpa_A Uncharacterized protein 86.1 1.8 6.1E-05 35.1 6.2 33 120-157 255-287 (671)
166 3of5_A Dethiobiotin synthetase 86.1 0.9 3.1E-05 31.5 4.1 25 4-28 9-33 (228)
167 3bgw_A DNAB-like replicative h 85.9 0.95 3.2E-05 34.7 4.5 45 3-49 200-244 (444)
168 3cmu_A Protein RECA, recombina 85.9 1.3 4.6E-05 40.4 5.8 40 3-44 1430-1469(2050)
169 3qxc_A Dethiobiotin synthetase 85.9 0.96 3.3E-05 31.7 4.2 31 4-36 26-56 (242)
170 3cio_A ETK, tyrosine-protein k 85.8 0.86 2.9E-05 32.9 4.0 31 5-37 110-140 (299)
171 1xp8_A RECA protein, recombina 85.7 0.94 3.2E-05 33.9 4.2 41 4-46 78-118 (366)
172 3bfv_A CAPA1, CAPB2, membrane 85.6 0.95 3.3E-05 32.2 4.1 31 5-37 88-118 (271)
173 2xj4_A MIPZ; replication, cell 85.2 1.1 3.7E-05 32.0 4.3 42 4-47 9-53 (286)
174 1wcv_1 SOJ, segregation protei 84.9 0.81 2.8E-05 32.0 3.5 32 4-37 11-42 (257)
175 2r62_A Cell division protease 84.8 0.75 2.6E-05 32.3 3.3 22 2-23 46-67 (268)
176 3ug7_A Arsenical pump-driving 84.7 0.97 3.3E-05 33.4 3.9 32 4-37 30-61 (349)
177 3fgn_A Dethiobiotin synthetase 84.2 1.4 4.6E-05 31.1 4.3 33 4-38 31-63 (251)
178 3iqw_A Tail-anchored protein t 83.9 0.77 2.6E-05 33.9 3.1 41 4-46 20-62 (334)
179 1vma_A Cell division protein F 83.9 2.9 9.9E-05 30.4 6.1 32 5-38 109-140 (306)
180 3cmu_A Protein RECA, recombina 83.8 2.1 7E-05 39.2 6.1 41 4-46 736-776 (2050)
181 3cwq_A Para family chromosome 83.5 1.1 3.8E-05 30.4 3.6 42 4-48 5-48 (209)
182 3la6_A Tyrosine-protein kinase 83.2 1.1 3.9E-05 32.1 3.7 32 4-37 97-128 (286)
183 3ea0_A ATPase, para family; al 83.0 0.94 3.2E-05 31.2 3.1 33 4-37 9-41 (245)
184 1u94_A RECA protein, recombina 82.8 1.4 4.7E-05 32.8 4.1 39 3-43 66-104 (356)
185 2woj_A ATPase GET3; tail-ancho 82.7 1.1 3.6E-05 33.3 3.4 34 6-39 24-57 (354)
186 1jbk_A CLPB protein; beta barr 82.7 0.71 2.4E-05 30.1 2.3 24 3-26 46-69 (195)
187 3k9g_A PF-32 protein; ssgcid, 82.2 1.2 4.3E-05 31.2 3.5 39 4-45 32-72 (267)
188 2r6a_A DNAB helicase, replicat 82.1 3.4 0.00012 31.6 6.1 46 3-49 206-251 (454)
189 1uaa_A REP helicase, protein ( 82.1 2.9 9.8E-05 33.7 6.0 50 4-53 19-71 (673)
190 3pg5_A Uncharacterized protein 81.2 1.4 4.9E-05 32.7 3.7 32 4-37 6-37 (361)
191 2chg_A Replication factor C sm 81.1 1.6 5.5E-05 29.1 3.7 23 3-25 41-63 (226)
192 2woo_A ATPase GET3; tail-ancho 81.1 1.4 4.9E-05 32.2 3.6 32 4-37 23-54 (329)
193 3io3_A DEHA2D07832P; chaperone 81.0 1.9 6.5E-05 32.0 4.2 42 5-46 23-66 (348)
194 2qz4_A Paraplegin; AAA+, SPG7, 80.7 0.85 2.9E-05 31.7 2.2 21 3-23 42-62 (262)
195 2xxa_A Signal recognition part 80.1 2.1 7.3E-05 32.7 4.4 31 7-38 107-137 (433)
196 3cf0_A Transitional endoplasmi 80.1 1.1 3.8E-05 32.2 2.7 40 2-46 51-90 (301)
197 2p65_A Hypothetical protein PF 79.6 0.7 2.4E-05 30.1 1.4 23 3-25 46-68 (187)
198 1ihu_A Arsenical pump-driving 79.4 2 6.9E-05 34.0 4.2 32 4-37 12-43 (589)
199 1d2n_A N-ethylmaleimide-sensit 79.0 1 3.5E-05 31.7 2.2 21 3-23 67-87 (272)
200 3hr8_A Protein RECA; alpha and 79.0 2.4 8.3E-05 31.5 4.2 39 4-44 65-103 (356)
201 3n70_A Transport activator; si 78.6 0.99 3.4E-05 28.6 1.8 18 3-20 27-44 (145)
202 3d8b_A Fidgetin-like protein 1 78.6 0.72 2.5E-05 34.2 1.3 35 2-41 119-153 (357)
203 2cvh_A DNA repair and recombin 78.1 2.8 9.6E-05 28.1 4.1 41 4-49 24-66 (220)
204 1q57_A DNA primase/helicase; d 77.9 2 7E-05 33.3 3.7 46 3-49 245-290 (503)
205 3fkq_A NTRC-like two-domain pr 77.8 2.6 8.8E-05 31.4 4.1 32 4-37 148-179 (373)
206 1lv7_A FTSH; alpha/beta domain 77.3 1.3 4.4E-05 30.9 2.3 21 2-22 47-67 (257)
207 1ofh_A ATP-dependent HSL prote 76.9 1.5 5.2E-05 31.2 2.6 21 3-23 53-73 (310)
208 2c9o_A RUVB-like 1; hexameric 76.9 1.3 4.3E-05 34.0 2.3 38 2-42 65-102 (456)
209 3igf_A ALL4481 protein; two-do 76.8 1.4 4.8E-05 33.1 2.4 39 6-46 8-47 (374)
210 1tue_A Replication protein E1; 76.8 1.1 3.8E-05 30.8 1.7 22 3-24 61-82 (212)
211 4fcw_A Chaperone protein CLPB; 76.4 1.9 6.6E-05 30.7 3.1 22 3-24 50-71 (311)
212 1g5t_A COB(I)alamin adenosyltr 76.4 2.8 9.5E-05 28.4 3.6 53 114-166 114-170 (196)
213 3co5_A Putative two-component 76.3 0.63 2.2E-05 29.5 0.4 17 3-19 30-46 (143)
214 1e9r_A Conjugal transfer prote 75.8 2.8 9.6E-05 31.7 3.9 36 3-40 56-91 (437)
215 2bjv_A PSP operon transcriptio 75.1 2.6 9E-05 29.4 3.4 19 3-21 32-50 (265)
216 2v3c_C SRP54, signal recogniti 74.6 2.2 7.4E-05 32.7 3.0 32 5-38 104-135 (432)
217 2r2a_A Uncharacterized protein 74.2 1.8 6.1E-05 29.3 2.2 21 3-23 8-28 (199)
218 3ez2_A Plasmid partition prote 74.2 3.4 0.00012 30.9 4.0 34 4-37 113-150 (398)
219 2eyq_A TRCF, transcription-rep 73.5 6 0.0002 34.3 5.7 50 5-60 22-72 (1151)
220 3b9p_A CG5977-PA, isoform A; A 73.2 1.6 5.6E-05 31.0 1.9 21 2-22 56-76 (297)
221 3uk6_A RUVB-like 2; hexameric 73.0 1.5 5E-05 32.3 1.7 22 3-24 73-94 (368)
222 1g5t_A COB(I)alamin adenosyltr 72.6 4.4 0.00015 27.4 3.9 31 5-37 33-63 (196)
223 4ag6_A VIRB4 ATPase, type IV s 72.2 6.1 0.00021 29.4 5.0 42 3-46 38-79 (392)
224 2qen_A Walker-type ATPase; unk 71.8 3 0.0001 30.1 3.1 38 121-158 129-173 (350)
225 3tqf_A HPR(Ser) kinase; transf 71.2 1.5 5.3E-05 29.3 1.3 21 2-22 18-38 (181)
226 1nlf_A Regulatory protein REPA 71.2 11 0.00038 26.4 6.0 46 4-50 34-88 (279)
227 1cr0_A DNA primase/helicase; R 70.9 9.1 0.00031 27.1 5.5 42 4-46 39-80 (296)
228 1yrb_A ATP(GTP)binding protein 70.7 3.8 0.00013 28.4 3.4 31 4-37 18-48 (262)
229 1ojl_A Transcriptional regulat 70.7 2.8 9.7E-05 30.2 2.7 20 2-21 27-46 (304)
230 1hqc_A RUVB; extended AAA-ATPa 70.2 2.5 8.6E-05 30.3 2.4 22 2-23 40-61 (324)
231 1um8_A ATP-dependent CLP prote 69.6 2.3 7.9E-05 31.5 2.1 21 3-23 75-95 (376)
232 3hws_A ATP-dependent CLP prote 69.5 2.3 8E-05 31.3 2.1 33 2-39 53-85 (363)
233 1ls1_A Signal recognition part 69.5 5.9 0.0002 28.5 4.2 30 7-38 105-134 (295)
234 2j37_W Signal recognition part 69.3 5.9 0.0002 31.0 4.4 31 6-38 107-137 (504)
235 2yvu_A Probable adenylyl-sulfa 68.9 7 0.00024 25.5 4.2 22 4-25 17-38 (186)
236 1pjr_A PCRA; DNA repair, DNA r 68.8 7 0.00024 31.9 4.9 49 4-52 28-79 (724)
237 1j8m_F SRP54, signal recogniti 68.5 4.6 0.00016 29.1 3.4 31 6-38 104-134 (297)
238 2ffh_A Protein (FFH); SRP54, s 68.4 5.8 0.0002 30.3 4.1 31 6-38 104-134 (425)
239 3pfi_A Holliday junction ATP-d 68.3 2.9 0.0001 30.3 2.4 20 2-21 57-76 (338)
240 2r44_A Uncharacterized protein 67.9 1.8 6.2E-05 31.4 1.2 21 2-22 48-68 (331)
241 1v5w_A DMC1, meiotic recombina 67.5 8.5 0.00029 28.2 4.8 38 4-41 126-167 (343)
242 3bs4_A Uncharacterized protein 67.3 13 0.00044 26.3 5.5 47 5-53 26-72 (260)
243 3eaq_A Heat resistant RNA depe 67.3 25 0.00086 23.5 8.7 37 26-64 27-64 (212)
244 3pxg_A Negative regulator of g 67.3 2.5 8.7E-05 32.5 2.0 24 3-26 204-227 (468)
245 2hjv_A ATP-dependent RNA helic 67.1 21 0.00073 22.6 8.5 37 26-64 31-68 (163)
246 1xjc_A MOBB protein homolog; s 66.8 8.6 0.00029 25.3 4.2 23 5-27 9-31 (169)
247 2qmh_A HPR kinase/phosphorylas 66.7 2.4 8.2E-05 29.0 1.5 20 3-22 37-56 (205)
248 3b9q_A Chloroplast SRP recepto 66.5 16 0.00056 26.3 6.0 32 5-38 105-136 (302)
249 1n0w_A DNA repair protein RAD5 65.3 4.3 0.00015 27.6 2.7 37 4-40 28-68 (243)
250 2ehv_A Hypothetical protein PH 65.3 19 0.00064 24.4 6.0 40 4-45 34-74 (251)
251 2z43_A DNA repair and recombin 65.2 7.3 0.00025 28.3 4.0 38 4-41 111-152 (324)
252 1ixz_A ATP-dependent metallopr 64.7 3.4 0.00012 28.6 2.1 21 2-22 51-71 (254)
253 4ag6_A VIRB4 ATPase, type IV s 64.6 1.1 3.9E-05 33.4 -0.4 15 120-134 262-276 (392)
254 1iqp_A RFCS; clamp loader, ext 64.1 3.5 0.00012 29.5 2.1 22 3-24 49-70 (327)
255 3trf_A Shikimate kinase, SK; a 63.5 4.8 0.00016 26.2 2.6 19 3-21 8-26 (185)
256 1u0j_A DNA replication protein 63.4 3.7 0.00013 29.3 2.0 21 3-23 107-127 (267)
257 3e70_C DPA, signal recognition 62.8 10 0.00035 27.7 4.4 31 5-37 134-164 (328)
258 1ihu_A Arsenical pump-driving 62.6 8.1 0.00028 30.6 4.1 31 4-36 331-361 (589)
259 1sxj_C Activator 1 40 kDa subu 62.4 5 0.00017 29.2 2.7 23 3-25 49-71 (340)
260 1g8p_A Magnesium-chelatase 38 62.3 2.3 8E-05 30.8 0.9 20 3-22 48-67 (350)
261 3vaa_A Shikimate kinase, SK; s 62.1 5.3 0.00018 26.5 2.6 20 3-22 28-47 (199)
262 3auy_A DNA double-strand break 61.5 3.8 0.00013 30.4 1.9 18 4-21 29-48 (371)
263 2qby_A CDC6 homolog 1, cell di 61.2 8.6 0.00029 28.0 3.8 24 3-26 48-71 (386)
264 3ez9_A Para; DNA binding, wing 61.0 4.9 0.00017 30.1 2.5 34 4-37 116-153 (403)
265 3hu3_A Transitional endoplasmi 60.7 4.1 0.00014 31.7 2.0 20 2-21 240-259 (489)
266 1tf7_A KAIC; homohexamer, hexa 60.4 15 0.00051 28.6 5.2 45 4-50 285-329 (525)
267 2ce7_A Cell division protein F 60.1 4.7 0.00016 31.3 2.3 21 2-22 51-71 (476)
268 2kjq_A DNAA-related protein; s 60.1 4 0.00014 26.0 1.6 22 4-25 40-61 (149)
269 1iy2_A ATP-dependent metallopr 59.9 4.7 0.00016 28.4 2.1 21 2-22 75-95 (278)
270 2chq_A Replication factor C sm 59.6 5.5 0.00019 28.3 2.4 22 3-24 41-62 (319)
271 3hjn_A DTMP kinase, thymidylat 58.7 13 0.00043 24.9 4.0 29 7-37 7-35 (197)
272 2fna_A Conserved hypothetical 58.7 5.2 0.00018 28.9 2.2 39 121-159 138-180 (357)
273 2ze6_A Isopentenyl transferase 58.7 6.4 0.00022 27.5 2.6 19 4-22 5-23 (253)
274 3lw7_A Adenylate kinase relate 58.6 3.9 0.00013 26.1 1.4 17 4-20 5-21 (179)
275 1wp9_A ATP-dependent RNA helic 58.6 53 0.0018 24.3 9.0 52 10-63 341-393 (494)
276 2iut_A DNA translocase FTSK; n 58.6 11 0.00039 29.9 4.2 38 3-40 217-256 (574)
277 1knx_A Probable HPR(Ser) kinas 58.0 3.4 0.00012 30.1 1.1 21 2-22 149-169 (312)
278 3cf2_A TER ATPase, transitiona 57.9 3.4 0.00012 34.3 1.2 40 2-46 513-552 (806)
279 2vhj_A Ntpase P4, P4; non- hyd 57.4 6.2 0.00021 29.1 2.4 20 4-23 127-146 (331)
280 2x8a_A Nuclear valosin-contain 57.0 5.3 0.00018 28.3 2.0 20 2-21 46-65 (274)
281 3pxi_A Negative regulator of g 57.0 9.1 0.00031 31.3 3.6 22 3-24 524-545 (758)
282 3a8t_A Adenylate isopentenyltr 56.7 5.5 0.00019 29.4 2.0 21 3-23 43-63 (339)
283 3pxi_A Negative regulator of g 56.5 5 0.00017 32.9 2.0 23 2-24 203-225 (758)
284 3nbx_X ATPase RAVA; AAA+ ATPas 56.3 3.7 0.00013 32.1 1.1 19 3-21 44-62 (500)
285 1sxj_E Activator 1 40 kDa subu 56.3 11 0.00038 27.3 3.7 41 120-160 134-175 (354)
286 1fuk_A Eukaryotic initiation f 56.2 36 0.0012 21.6 8.9 37 26-64 26-63 (165)
287 3kb2_A SPBC2 prophage-derived 56.0 7.6 0.00026 24.7 2.5 17 4-20 5-21 (173)
288 1kht_A Adenylate kinase; phosp 55.8 8 0.00027 25.1 2.6 20 4-23 7-26 (192)
289 3p32_A Probable GTPase RV1496/ 55.7 13 0.00044 27.4 3.9 31 5-37 84-114 (355)
290 2og2_A Putative signal recogni 55.7 15 0.00052 27.2 4.3 31 5-37 162-192 (359)
291 2jaq_A Deoxyguanosine kinase; 55.1 7.5 0.00026 25.5 2.4 20 3-22 3-22 (205)
292 1g41_A Heat shock protein HSLU 54.9 6.2 0.00021 30.3 2.1 21 2-22 52-72 (444)
293 1via_A Shikimate kinase; struc 54.9 8.5 0.00029 24.8 2.6 19 3-21 7-25 (175)
294 3iij_A Coilin-interacting nucl 54.8 8.3 0.00029 24.9 2.6 19 3-21 14-32 (180)
295 1odf_A YGR205W, hypothetical 3 54.5 10 0.00035 27.2 3.1 21 4-24 35-55 (290)
296 3pvs_A Replication-associated 54.4 6.1 0.00021 30.3 2.0 20 3-22 53-72 (447)
297 2rb4_A ATP-dependent RNA helic 54.4 40 0.0014 21.6 8.6 43 20-64 24-67 (175)
298 1rj9_A FTSY, signal recognitio 54.2 15 0.0005 26.6 3.9 32 5-38 107-138 (304)
299 3sr0_A Adenylate kinase; phosp 53.9 7.9 0.00027 26.2 2.4 20 2-21 2-21 (206)
300 1ak2_A Adenylate kinase isoenz 53.7 8 0.00027 26.4 2.4 20 3-22 19-38 (233)
301 2pt5_A Shikimate kinase, SK; a 53.4 8.4 0.00029 24.5 2.4 18 3-20 3-20 (168)
302 1zuh_A Shikimate kinase; alpha 52.8 9.5 0.00032 24.3 2.6 17 4-20 11-27 (168)
303 3u4q_A ATP-dependent helicase/ 52.5 8.9 0.0003 33.4 2.9 36 4-39 27-66 (1232)
304 3t61_A Gluconokinase; PSI-biol 52.4 9.4 0.00032 25.2 2.6 18 3-20 21-38 (202)
305 1fnn_A CDC6P, cell division co 52.4 8.8 0.0003 28.1 2.6 22 3-24 47-68 (389)
306 2iyv_A Shikimate kinase, SK; t 52.3 9.6 0.00033 24.7 2.6 19 3-21 5-23 (184)
307 3a4m_A L-seryl-tRNA(SEC) kinas 52.0 19 0.00066 25.0 4.2 21 3-23 7-27 (260)
308 3cf2_A TER ATPase, transitiona 51.8 4.6 0.00016 33.5 1.0 20 2-21 240-259 (806)
309 1qvr_A CLPB protein; coiled co 51.7 11 0.00037 31.4 3.2 23 3-25 591-613 (854)
310 1ko7_A HPR kinase/phosphatase; 51.6 5.6 0.00019 29.1 1.3 21 2-22 146-166 (314)
311 2obn_A Hypothetical protein; s 51.6 18 0.00063 26.8 4.1 34 4-39 157-190 (349)
312 1qhx_A CPT, protein (chloramph 51.4 9.6 0.00033 24.5 2.4 18 3-20 6-23 (178)
313 2ius_A DNA translocase FTSK; n 51.4 19 0.00065 28.2 4.4 38 3-40 170-209 (512)
314 3fb4_A Adenylate kinase; psych 51.3 9.1 0.00031 25.6 2.4 18 3-20 3-20 (216)
315 3cmw_A Protein RECA, recombina 51.0 14 0.00047 33.5 3.8 40 3-44 735-774 (1706)
316 1t5i_A C_terminal domain of A 50.9 46 0.0016 21.3 9.1 38 25-64 26-64 (172)
317 2rhm_A Putative kinase; P-loop 50.7 8.3 0.00028 25.1 2.0 18 4-21 9-26 (193)
318 1ry6_A Internal kinesin; kines 50.3 5.1 0.00017 29.9 1.0 13 7-19 92-104 (360)
319 1in4_A RUVB, holliday junction 50.2 9.8 0.00033 27.7 2.5 21 3-23 54-74 (334)
320 1e6c_A Shikimate kinase; phosp 50.0 11 0.00038 24.0 2.6 19 3-21 5-23 (173)
321 1e4v_A Adenylate kinase; trans 49.7 7.9 0.00027 26.0 1.8 19 3-21 3-21 (214)
322 3cm0_A Adenylate kinase; ATP-b 49.7 11 0.00039 24.3 2.6 18 4-21 8-25 (186)
323 1tev_A UMP-CMP kinase; ploop, 49.2 12 0.0004 24.3 2.6 17 4-20 7-23 (196)
324 1nks_A Adenylate kinase; therm 49.0 9.4 0.00032 24.7 2.1 21 4-24 5-25 (194)
325 2eyu_A Twitching motility prot 48.8 21 0.00072 25.0 4.0 22 4-25 29-50 (261)
326 3exa_A TRNA delta(2)-isopenten 48.7 9.9 0.00034 27.9 2.3 20 4-23 7-26 (322)
327 3sqw_A ATP-dependent RNA helic 48.7 95 0.0033 24.3 8.8 37 28-64 286-324 (579)
328 3cmw_A Protein RECA, recombina 48.5 16 0.00054 33.1 3.8 40 3-44 386-425 (1706)
329 1ly1_A Polynucleotide kinase; 48.5 11 0.00036 24.2 2.3 17 4-20 6-22 (181)
330 2yhs_A FTSY, cell division pro 48.5 22 0.00074 27.8 4.2 31 5-37 298-328 (503)
331 3dl0_A Adenylate kinase; phosp 48.4 9.9 0.00034 25.4 2.2 19 2-20 2-20 (216)
332 2ewv_A Twitching motility prot 48.4 20 0.00068 26.7 4.0 23 4-26 140-162 (372)
333 1aky_A Adenylate kinase; ATP:A 48.4 12 0.00041 25.1 2.6 19 3-21 7-25 (220)
334 1vc3_B L-aspartate-alpha-decar 48.4 7.4 0.00025 23.0 1.3 38 94-133 54-91 (96)
335 2dhr_A FTSH; AAA+ protein, hex 48.2 8.5 0.00029 30.0 2.0 21 2-22 66-86 (499)
336 3foz_A TRNA delta(2)-isopenten 47.9 11 0.00038 27.5 2.4 20 4-23 14-33 (316)
337 3crm_A TRNA delta(2)-isopenten 47.9 11 0.00038 27.6 2.4 20 3-22 8-27 (323)
338 3nwn_A Kinesin-like protein KI 47.8 4.6 0.00016 30.1 0.4 13 7-19 112-124 (359)
339 1f2t_A RAD50 ABC-ATPase; DNA d 47.7 12 0.00042 23.6 2.4 13 4-16 27-39 (149)
340 1zp6_A Hypothetical protein AT 47.6 5.9 0.0002 25.9 0.9 14 4-17 13-26 (191)
341 1v8k_A Kinesin-like protein KI 47.5 5.9 0.0002 30.1 1.0 13 7-19 162-174 (410)
342 1f9v_A Kinesin-like protein KA 47.3 6.4 0.00022 29.2 1.1 13 7-19 92-104 (347)
343 1qf9_A UMP/CMP kinase, protein 47.2 10 0.00035 24.6 2.0 17 4-20 10-26 (194)
344 1y63_A LMAJ004144AAA protein; 47.1 12 0.00041 24.4 2.4 18 3-20 13-30 (184)
345 3uie_A Adenylyl-sulfate kinase 46.9 13 0.00044 24.6 2.6 22 4-25 29-50 (200)
346 2c95_A Adenylate kinase 1; tra 46.4 11 0.00037 24.6 2.1 18 4-21 13-30 (196)
347 2bdt_A BH3686; alpha-beta prot 46.3 7.8 0.00027 25.3 1.3 17 4-20 6-22 (189)
348 3d3q_A TRNA delta(2)-isopenten 46.1 10 0.00035 28.0 2.0 20 4-23 11-30 (340)
349 2i1q_A DNA repair and recombin 46.0 9.5 0.00033 27.5 1.9 20 4-23 102-121 (322)
350 1w36_B RECB, exodeoxyribonucle 45.5 16 0.00056 31.6 3.5 39 120-161 377-418 (1180)
351 3k1j_A LON protease, ATP-depen 45.4 20 0.00067 28.6 3.7 20 3-22 63-82 (604)
352 1x88_A Kinesin-like protein KI 45.3 5.4 0.00018 29.7 0.5 13 7-19 96-108 (359)
353 1rz3_A Hypothetical protein rb 45.0 26 0.00087 23.2 3.8 19 5-23 27-45 (201)
354 2h58_A Kinesin-like protein KI 44.9 5.4 0.00019 29.3 0.4 13 7-19 88-100 (330)
355 2cdn_A Adenylate kinase; phosp 44.6 14 0.00047 24.4 2.4 19 3-21 23-41 (201)
356 3pzx_A Formate--tetrahydrofola 44.6 37 0.0013 26.7 4.9 33 10-44 71-103 (557)
357 3fht_A ATP-dependent RNA helic 44.3 89 0.003 22.7 7.6 41 22-64 258-299 (412)
358 1p9r_A General secretion pathw 44.3 14 0.00047 28.1 2.6 21 4-24 171-191 (418)
359 1bg2_A Kinesin; motor protein, 44.3 5.6 0.00019 29.2 0.4 13 7-19 85-97 (325)
360 1t5c_A CENP-E protein, centrom 44.2 5.6 0.00019 29.5 0.4 13 7-19 85-97 (349)
361 3i5x_A ATP-dependent RNA helic 44.2 1.1E+02 0.0037 23.7 8.8 50 15-64 323-375 (563)
362 3jvv_A Twitching mobility prot 44.1 14 0.00048 27.3 2.6 23 4-26 127-149 (356)
363 1jjv_A Dephospho-COA kinase; P 44.0 8.8 0.0003 25.4 1.3 14 4-17 6-19 (206)
364 2pbr_A DTMP kinase, thymidylat 44.0 15 0.00053 23.7 2.6 21 4-24 4-24 (195)
365 2v54_A DTMP kinase, thymidylat 44.0 9 0.00031 25.2 1.4 17 4-20 8-24 (204)
366 4a0g_A Adenosylmethionine-8-am 44.0 12 0.00041 31.2 2.3 24 4-27 39-62 (831)
367 3cob_A Kinesin heavy chain-lik 43.9 5.9 0.0002 29.6 0.5 13 7-19 87-99 (369)
368 1lkx_A Myosin IE heavy chain; 43.9 15 0.00051 30.0 2.8 26 3-28 97-122 (697)
369 3t0q_A AGR253WP; kinesin, alph 43.9 7.6 0.00026 28.8 1.0 12 7-18 93-104 (349)
370 1gvn_B Zeta; postsegregational 43.7 13 0.00044 26.5 2.2 19 3-21 36-54 (287)
371 2heh_A KIF2C protein; kinesin, 43.7 7 0.00024 29.4 0.9 13 7-19 142-154 (387)
372 2plr_A DTMP kinase, probable t 43.7 16 0.00054 24.1 2.6 20 4-23 8-27 (213)
373 1w5s_A Origin recognition comp 43.7 17 0.00058 26.8 3.0 20 6-25 58-77 (412)
374 2f1r_A Molybdopterin-guanine d 43.3 8.4 0.00029 25.2 1.1 21 6-26 8-28 (171)
375 2vvg_A Kinesin-2; motor protei 43.2 6 0.0002 29.4 0.4 13 7-19 97-109 (350)
376 1goj_A Kinesin, kinesin heavy 43.2 6 0.0002 29.4 0.4 13 7-19 88-100 (355)
377 1ypw_A Transitional endoplasmi 43.1 18 0.00063 29.9 3.3 23 2-24 513-535 (806)
378 3qks_A DNA double-strand break 43.0 15 0.00052 24.5 2.4 14 4-17 27-40 (203)
379 2wbe_C Bipolar kinesin KRP-130 42.9 6.1 0.00021 29.6 0.4 13 7-19 108-120 (373)
380 1zak_A Adenylate kinase; ATP:A 42.8 14 0.00047 24.9 2.2 19 3-21 8-26 (222)
381 1oyw_A RECQ helicase, ATP-depe 42.8 1.2E+02 0.004 23.6 8.9 36 28-65 234-270 (523)
382 2z0h_A DTMP kinase, thymidylat 42.6 20 0.00067 23.3 2.9 21 4-24 4-24 (197)
383 4hlc_A DTMP kinase, thymidylat 42.6 17 0.00059 24.4 2.6 24 1-24 1-26 (205)
384 3lre_A Kinesin-like protein KI 42.6 6.3 0.00022 29.3 0.5 13 7-19 113-125 (355)
385 3qf7_A RAD50; ABC-ATPase, ATPa 42.5 15 0.0005 27.3 2.4 28 119-146 302-331 (365)
386 1knq_A Gluconate kinase; ALFA/ 42.5 17 0.00058 23.2 2.6 17 4-20 12-28 (175)
387 4eun_A Thermoresistant glucoki 42.5 17 0.00059 24.0 2.6 17 4-20 33-49 (200)
388 2xb4_A Adenylate kinase; ATP-b 42.5 15 0.00053 24.8 2.4 19 3-21 3-21 (223)
389 1uhe_A Aspartate 1-decarboxyla 42.4 8.1 0.00028 22.9 0.8 39 93-133 51-89 (97)
390 2rep_A Kinesin-like protein KI 42.3 6.3 0.00021 29.6 0.4 13 7-19 123-135 (376)
391 3eph_A TRNA isopentenyltransfe 42.2 13 0.00043 28.3 2.0 21 4-24 6-26 (409)
392 2bwj_A Adenylate kinase 5; pho 42.2 14 0.00047 24.1 2.1 17 4-20 16-32 (199)
393 2j41_A Guanylate kinase; GMP, 42.0 9.9 0.00034 25.0 1.3 16 4-19 10-25 (207)
394 1w9i_A Myosin II heavy chain; 42.0 15 0.00053 30.3 2.6 24 3-26 175-198 (770)
395 2qor_A Guanylate kinase; phosp 41.9 16 0.00056 24.2 2.4 18 4-21 16-33 (204)
396 3b6u_A Kinesin-like protein KI 41.9 6.4 0.00022 29.5 0.4 13 7-19 109-121 (372)
397 3gbj_A KIF13B protein; kinesin 41.8 6.6 0.00023 29.2 0.5 13 7-19 100-112 (354)
398 3bfn_A Kinesin-like protein KI 41.7 6.6 0.00023 29.6 0.5 13 7-19 106-118 (388)
399 2zfi_A Kinesin-like protein KI 41.7 6.5 0.00022 29.4 0.4 13 7-19 97-109 (366)
400 4etp_A Kinesin-like protein KA 41.7 11 0.00037 28.6 1.6 12 7-18 148-159 (403)
401 3umf_A Adenylate kinase; rossm 41.7 18 0.0006 24.7 2.6 18 4-21 33-50 (217)
402 3f9v_A Minichromosome maintena 41.6 8.2 0.00028 30.8 1.0 16 2-17 329-344 (595)
403 1r6b_X CLPA protein; AAA+, N-t 41.5 15 0.00051 30.0 2.6 22 3-24 491-512 (758)
404 1kag_A SKI, shikimate kinase I 41.5 15 0.0005 23.4 2.1 15 3-17 7-21 (173)
405 3be4_A Adenylate kinase; malar 41.3 13 0.00045 25.0 1.9 18 4-21 9-26 (217)
406 2v26_A Myosin VI; calmodulin-b 41.3 16 0.00055 30.3 2.6 24 3-26 143-166 (784)
407 4ehx_A Tetraacyldisaccharide 4 41.2 10 0.00036 27.6 1.4 16 10-25 48-63 (315)
408 2y65_A Kinesin, kinesin heavy 41.2 6.7 0.00023 29.3 0.4 13 7-19 92-104 (365)
409 3i32_A Heat resistant RNA depe 40.9 97 0.0033 22.1 8.3 37 26-64 24-61 (300)
410 3tau_A Guanylate kinase, GMP k 40.8 16 0.00055 24.4 2.3 17 4-20 12-28 (208)
411 2jgn_A DBX, DDX3, ATP-dependen 40.7 73 0.0025 20.7 7.0 35 29-65 45-80 (185)
412 1kgd_A CASK, peripheral plasma 40.5 18 0.00062 23.5 2.4 17 4-20 9-25 (180)
413 1np6_A Molybdopterin-guanine d 40.4 25 0.00085 23.0 3.1 21 5-25 11-31 (174)
414 2owm_A Nckin3-434, related to 40.4 7.1 0.00024 30.0 0.5 13 7-19 144-156 (443)
415 1ny5_A Transcriptional regulat 40.3 28 0.00095 25.9 3.7 15 3-17 163-177 (387)
416 3plx_B Aspartate 1-decarboxyla 40.2 8.9 0.00031 22.9 0.8 39 93-133 52-90 (102)
417 2nr8_A Kinesin-like protein KI 40.1 7.1 0.00024 29.1 0.4 13 7-19 111-123 (358)
418 4anj_A Unconventional myosin-V 39.9 16 0.00054 31.4 2.5 25 3-27 147-171 (1052)
419 3tqc_A Pantothenate kinase; bi 39.9 30 0.001 25.2 3.7 13 5-17 97-109 (321)
420 2hf9_A Probable hydrogenase ni 39.7 32 0.0011 22.9 3.7 20 5-24 43-62 (226)
421 3dc4_A Kinesin-like protein NO 39.3 11 0.00039 27.8 1.4 31 135-165 288-321 (344)
422 1w7j_A Myosin VA; motor protei 39.2 18 0.00061 30.0 2.6 26 3-28 159-184 (795)
423 1uf9_A TT1252 protein; P-loop, 39.0 9.5 0.00033 25.0 0.9 14 4-17 12-25 (203)
424 1m7g_A Adenylylsulfate kinase; 39.0 20 0.00069 23.8 2.6 21 4-24 29-49 (211)
425 1kk8_A Myosin heavy chain, str 38.9 18 0.00062 30.2 2.6 25 3-27 172-196 (837)
426 3m6a_A ATP-dependent protease 38.7 17 0.0006 28.5 2.4 21 3-23 111-131 (543)
427 3dmp_A Uracil phosphoribosyltr 38.6 86 0.0029 21.4 5.6 54 3-59 132-187 (217)
428 2pez_A Bifunctional 3'-phospho 38.6 22 0.00074 22.9 2.6 20 4-23 9-28 (179)
429 4db1_A Myosin-7; S1DC, cardiac 38.4 19 0.00065 29.9 2.6 24 3-26 174-197 (783)
430 2g0t_A Conserved hypothetical 38.2 24 0.0008 26.2 2.9 33 5-39 175-207 (350)
431 1vht_A Dephospho-COA kinase; s 38.2 13 0.00043 25.0 1.4 14 4-17 8-21 (218)
432 1pqh_A Aspartate 1-decarboxyla 38.1 13 0.00046 23.5 1.4 41 92-134 93-133 (143)
433 2p67_A LAO/AO transport system 38.1 37 0.0013 24.7 4.0 20 6-25 62-81 (341)
434 4gp7_A Metallophosphoesterase; 37.5 13 0.00046 23.9 1.4 14 4-17 13-26 (171)
435 2oap_1 GSPE-2, type II secreti 37.5 11 0.00038 29.4 1.1 20 3-22 263-282 (511)
436 1ukz_A Uridylate kinase; trans 37.3 21 0.00071 23.5 2.4 17 4-20 19-35 (203)
437 3ake_A Cytidylate kinase; CMP 37.2 23 0.0008 23.2 2.6 17 4-20 6-22 (208)
438 2wwf_A Thymidilate kinase, put 37.0 18 0.00062 23.9 2.0 21 4-24 14-34 (212)
439 3u06_A Protein claret segregat 37.0 8.2 0.00028 29.3 0.3 13 7-19 146-158 (412)
440 1s2m_A Putative ATP-dependent 36.9 1.2E+02 0.0041 22.0 8.9 40 23-64 251-291 (400)
441 2ga8_A Hypothetical 39.9 kDa p 36.9 22 0.00076 26.5 2.6 19 3-21 27-45 (359)
442 3tlx_A Adenylate kinase 2; str 36.9 23 0.00079 24.3 2.6 19 3-21 32-50 (243)
443 4a14_A Kinesin, kinesin-like p 36.7 13 0.00046 27.4 1.4 13 7-19 91-103 (344)
444 2p5t_B PEZT; postsegregational 36.5 11 0.00039 26.1 1.0 18 4-21 36-53 (253)
445 1ye8_A Protein THEP1, hypothet 36.4 23 0.00078 23.2 2.4 25 119-143 98-122 (178)
446 1jr3_D DNA polymerase III, del 36.1 38 0.0013 24.4 3.8 38 120-157 76-115 (343)
447 2vli_A Antibiotic resistance p 35.7 13 0.00046 23.8 1.2 17 4-20 9-25 (183)
448 2dfs_A Myosin-5A; myosin-V, in 35.5 22 0.00074 30.7 2.6 25 3-27 159-183 (1080)
449 3euj_A Chromosome partition pr 35.4 16 0.00055 28.4 1.7 11 119-129 413-423 (483)
450 3lda_A DNA repair protein RAD5 35.3 19 0.00066 27.1 2.1 38 4-41 182-223 (400)
451 2ycu_A Non muscle myosin 2C, a 35.0 21 0.00071 30.5 2.4 25 3-27 149-173 (995)
452 4a74_A DNA repair and recombin 35.0 17 0.00057 24.3 1.6 19 4-22 29-47 (231)
453 1suy_C CIIABD, circadian clock 35.0 9.9 0.00034 16.9 0.3 13 153-165 5-17 (34)
454 3nwj_A ATSK2; P loop, shikimat 34.6 26 0.00088 24.5 2.6 18 3-20 51-68 (250)
455 2if2_A Dephospho-COA kinase; a 34.5 12 0.00042 24.6 0.9 14 4-17 5-18 (204)
456 1nij_A Hypothetical protein YJ 34.5 30 0.001 24.9 3.0 13 4-16 8-20 (318)
457 1zd8_A GTP:AMP phosphotransfer 34.4 20 0.00067 24.2 1.9 17 4-20 11-27 (227)
458 3l0o_A Transcription terminati 34.0 37 0.0013 25.9 3.4 20 5-24 180-199 (427)
459 1g8x_A Myosin II heavy chain f 33.6 20 0.00069 30.7 2.1 24 3-26 175-198 (1010)
460 1nn5_A Similar to deoxythymidy 33.5 22 0.00076 23.4 2.0 21 4-24 13-33 (215)
461 3a00_A Guanylate kinase, GMP k 33.5 16 0.00053 23.9 1.2 14 4-17 5-18 (186)
462 3tr0_A Guanylate kinase, GMP k 33.2 27 0.00093 22.8 2.4 16 4-19 11-26 (205)
463 2j0s_A ATP-dependent RNA helic 33.1 1.4E+02 0.0048 21.7 7.6 37 26-64 272-309 (410)
464 1ypw_A Transitional endoplasmi 33.0 20 0.00067 29.8 2.0 20 2-21 240-259 (806)
465 1cke_A CK, MSSA, protein (cyti 32.6 31 0.0011 23.0 2.7 15 4-18 9-23 (227)
466 3kta_A Chromosome segregation 32.1 20 0.00068 23.1 1.6 14 4-17 30-43 (182)
467 3c8u_A Fructokinase; YP_612366 32.1 30 0.001 23.0 2.5 16 5-20 27-42 (208)
468 2c45_A Aspartate 1-decarboxyla 31.9 14 0.00048 23.3 0.7 39 94-134 78-116 (139)
469 4h1g_A Maltose binding protein 31.8 14 0.00049 30.1 0.9 31 135-165 664-697 (715)
470 3pey_A ATP-dependent RNA helic 30.8 1.5E+02 0.0051 21.3 7.1 44 19-64 232-276 (395)
471 1i84_S Smooth muscle myosin he 30.8 24 0.00082 30.7 2.2 25 3-27 172-196 (1184)
472 2bbw_A Adenylate kinase 4, AK4 30.5 34 0.0012 23.4 2.6 16 4-19 31-46 (246)
473 3ice_A Transcription terminati 30.2 69 0.0024 24.4 4.3 19 4-22 178-196 (422)
474 2grj_A Dephospho-COA kinase; T 29.8 34 0.0012 22.7 2.5 15 5-19 17-31 (192)
475 3ney_A 55 kDa erythrocyte memb 29.6 34 0.0012 22.9 2.4 18 4-21 23-40 (197)
476 3qkt_A DNA double-strand break 29.1 33 0.0011 24.9 2.4 16 120-135 272-287 (339)
477 4tmk_A Protein (thymidylate ki 29.1 82 0.0028 21.2 4.3 23 6-28 9-31 (213)
478 1uj2_A Uridine-cytidine kinase 29.0 29 0.00098 23.9 2.0 17 4-20 26-42 (252)
479 2i4i_A ATP-dependent RNA helic 28.7 1.7E+02 0.0058 21.3 8.1 36 28-65 274-310 (417)
480 3aez_A Pantothenate kinase; tr 28.6 73 0.0025 22.9 4.2 14 120-133 194-207 (312)
481 4e22_A Cytidylate kinase; P-lo 28.6 23 0.00079 24.5 1.5 15 4-18 31-45 (252)
482 2f6r_A COA synthase, bifunctio 28.5 18 0.00061 25.6 0.9 15 4-18 79-93 (281)
483 2qt1_A Nicotinamide riboside k 28.4 24 0.00082 23.3 1.5 13 5-17 26-38 (207)
484 2dyk_A GTP-binding protein; GT 28.4 31 0.0011 21.2 2.0 17 4-20 5-21 (161)
485 3lv8_A DTMP kinase, thymidylat 28.4 46 0.0016 22.9 3.0 23 5-27 32-54 (236)
486 1c9k_A COBU, adenosylcobinamid 28.0 83 0.0028 20.7 4.0 41 6-52 5-46 (180)
487 2i3b_A HCR-ntpase, human cance 27.7 35 0.0012 22.5 2.2 29 118-146 103-131 (189)
488 2ck3_A ATP synthase subunit al 27.5 60 0.002 25.5 3.7 22 5-26 167-188 (510)
489 1pzn_A RAD51, DNA repair and r 27.3 30 0.001 25.4 2.0 37 5-41 136-176 (349)
490 4eaq_A DTMP kinase, thymidylat 26.9 43 0.0015 22.8 2.6 20 4-23 30-49 (229)
491 1ex7_A Guanylate kinase; subst 26.7 42 0.0014 22.2 2.4 14 4-17 5-18 (186)
492 2p6n_A ATP-dependent RNA helic 26.7 1.4E+02 0.0046 19.5 8.4 33 30-64 54-87 (191)
493 2v9p_A Replication protein E1; 26.6 35 0.0012 24.7 2.2 30 5-39 131-160 (305)
494 1lvg_A Guanylate kinase, GMP k 26.6 45 0.0015 22.0 2.6 15 4-18 8-22 (198)
495 4akg_A Glutathione S-transfera 26.4 23 0.00079 33.7 1.4 19 2-20 647-665 (2695)
496 1p5z_B DCK, deoxycytidine kina 26.2 25 0.00087 24.3 1.3 14 4-17 28-41 (263)
497 3oug_A Aspartate 1-decarboxyla 26.1 21 0.00072 21.7 0.8 33 94-129 81-113 (114)
498 1q3t_A Cytidylate kinase; nucl 26.1 44 0.0015 22.6 2.5 15 4-18 20-34 (236)
499 2wsm_A Hydrogenase expression/ 25.8 37 0.0013 22.4 2.1 20 4-23 34-53 (221)
500 2h92_A Cytidylate kinase; ross 25.8 37 0.0013 22.5 2.1 16 3-18 6-21 (219)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=254.33 Aligned_cols=160 Identities=28% Similarity=0.434 Sum_probs=138.2
Q ss_pred CCccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecCcchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCC
Q psy1090 1 MDTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLP 79 (169)
Q Consensus 1 ~g~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (169)
.||||+|+||+|||+++++++..+... ...+|+|||||.+++.||.+|+.+|+|++++..++|....+..+....+...
T Consensus 256 ~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~ 335 (800)
T 3mwy_W 256 DNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTN 335 (800)
T ss_dssp CCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSC
T ss_pred CCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhcc
Confidence 379999999999999999999877644 5568999999999999999999999999999999999988877666554321
Q ss_pred CcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhccccccEEEEeccCC
Q psy1090 80 TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYY 159 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~lT~TP~ 159 (169)
.. ........+++ +++||+.+.++...+....|++||+||||++||..++.++++..+++++||+|||||+
T Consensus 336 ~~--------~~~~~~~~~dv-vitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPi 406 (800)
T 3mwy_W 336 PR--------AKGKKTMKFNV-LLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPL 406 (800)
T ss_dssp C-------------CCCCCSE-EEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCC
T ss_pred cc--------ccccccccCCE-EEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcC
Confidence 11 01112256788 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhccC
Q psy1090 160 PNKWSKQCTL 169 (169)
Q Consensus 160 ~n~~~el~~l 169 (169)
+|++.|||+|
T Consensus 407 qN~l~el~~l 416 (800)
T 3mwy_W 407 QNNIKELAAL 416 (800)
T ss_dssp SSCSHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999999974
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.3e-36 Score=239.36 Aligned_cols=154 Identities=21% Similarity=0.331 Sum_probs=124.4
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCC-----CCceEEEecCcchHHHHHHHHHhCCC-ceEEEEeC-CHHHHHHHHHh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQA-----LEPNLIVCPLSVLNNWEAEFRKFAPF-VRTVKYYG-NAIERKALQSE 74 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~-----~~~~Liv~P~~~l~qW~~e~~~~~~~-~~~~~~~g-~~~~~~~~~~~ 74 (169)
||||+||||+|||+++++++..+...+. .+++|||||.+++.||.+|+.+|.|. ..++.+++ ..+........
T Consensus 81 g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (644)
T 1z3i_X 81 GCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVN 160 (644)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHH
T ss_pred CeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHH
Confidence 6899999999999999999988776542 35799999999999999999999864 55555554 43332222111
Q ss_pred hhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhccccccEEEE
Q psy1090 75 ALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLL 154 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~l 154 (169)
...... .....++ +++||+.+..+...+....|+++|+||||++||+.++.++++..+++++||+|
T Consensus 161 ~~~~~~-------------~~~~~~v-vi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~L 226 (644)
T 1z3i_X 161 FISQQG-------------MRIPTPI-LIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLI 226 (644)
T ss_dssp HHCCCS-------------SCCSCCE-EEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEE
T ss_pred HHHhcC-------------CCCCCcE-EEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEE
Confidence 111000 0134567 99999999998888888999999999999999999999999999999999999
Q ss_pred eccCCCCCchhhccC
Q psy1090 155 TGWYYPNKWSKQCTL 169 (169)
Q Consensus 155 T~TP~~n~~~el~~l 169 (169)
||||++|++.|||+|
T Consensus 227 TgTPiqN~l~El~sl 241 (644)
T 1z3i_X 227 SGTPIQNDLLEYFSL 241 (644)
T ss_dssp CSSCSGGGGGGCHHH
T ss_pred ecCcccCCHHHHHHH
Confidence 999999999999975
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.1e-35 Score=229.09 Aligned_cols=141 Identities=30% Similarity=0.539 Sum_probs=124.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCCc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTI 81 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (169)
||+|+|+||+|||+++++++..+...+..+++|||||.+++.||.+|+.+|.|+.++..++|.... .
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~~~~v~~~~g~~~~------~------- 124 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSK------I------- 124 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCTTSCEEECSSSTTS------C-------
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCCCceEEEEecCchh------c-------
Confidence 789999999999999999998888777778999999999999999999999999999888876521 0
Q ss_pred ccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhccccccEEEEeccCCCC
Q psy1090 82 KVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYPN 161 (169)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~lT~TP~~n 161 (169)
.....++ +++||+.+.++.. +....|+++|+||||+++|..++.++++..++++++++|||||++|
T Consensus 125 ------------~~~~~~i-vi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n 190 (500)
T 1z63_A 125 ------------KLEDYDI-ILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIEN 190 (500)
T ss_dssp ------------CGGGSSE-EEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTT
T ss_pred ------------cccCCcE-EEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCC
Confidence 0145677 9999999987765 6677999999999999999999999999999999999999999999
Q ss_pred CchhhccC
Q psy1090 162 KWSKQCTL 169 (169)
Q Consensus 162 ~~~el~~l 169 (169)
++.|||++
T Consensus 191 ~~~el~~l 198 (500)
T 1z63_A 191 KVDDLWSI 198 (500)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999864
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=4.7e-30 Score=213.18 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=118.1
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCCc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTI 81 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (169)
+++|+|+||+|||+++++++......+..+++|||||.+++.||..|+.+++ +..+.++++............ .
T Consensus 172 ~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~v~~~~~~~~~~~~~~~----~- 245 (968)
T 3dmq_A 172 RVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFALFDDERYAEAQHDAYN----P- 245 (968)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCEECCHHHHHHHHHTTCS----S-
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCEEEEccchhhhhhhhccc----c-
Confidence 6899999999999999999988888887889999999999999999998887 677777766543321111000 0
Q ss_pred ccccccCCccccccCCCCeEEEecHHHHHhch---hccccccccEEEEeCCcccCCcccHH---HHHHhcc--ccccEEE
Q psy1090 82 KVPAKKGKTKKQISLKLPLILVTTPQIIENDF---GFLKKITWNCIIVDEGHSVKNKKSKL---SIKLTAL--RATFKVL 153 (169)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~---~~~~~~~~~~vi~DEah~~k~~~~~~---~~~~~~l--~~~~~~~ 153 (169)
....++ +++||+.+.++. ..+....|+++|+||||++++..++. ++.+..+ +++++|+
T Consensus 246 -------------~~~~dI-vI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~ 311 (968)
T 3dmq_A 246 -------------FDTEQL-VICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLL 311 (968)
T ss_dssp -------------STTCSE-EEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEE
T ss_pred -------------cccCCE-EEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEE
Confidence 145677 999999997754 34566789999999999999876553 7777776 6788999
Q ss_pred EeccCCCCCchhhccC
Q psy1090 154 LTGWYYPNKWSKQCTL 169 (169)
Q Consensus 154 lT~TP~~n~~~el~~l 169 (169)
|||||++|++.|+|++
T Consensus 312 LTATPi~n~~~el~sl 327 (968)
T 3dmq_A 312 LTATPEQLGMESHFAR 327 (968)
T ss_dssp SCSSCSSSCSSCTHHH
T ss_pred EEcCCccCCHHHHHHH
Confidence 9999999999999863
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=4.2e-24 Score=164.96 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=103.1
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhcC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFA--PFVRTVKYYGNAIERKALQSEALSL 78 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~ 78 (169)
+++++++||+|||++++.++..... +..+++|||||. .++.||.+++.+|. +...+..++|.......... .
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~--~-- 99 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKA--W-- 99 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHH--H--
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhh--c--
Confidence 5799999999999999998876655 446789999998 78899999999998 55688888887544322111 1
Q ss_pred CCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcccHHHH--HHh-ccccccEEE
Q psy1090 79 PTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKKSKLSI--KLT-ALRATFKVL 153 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~~~~~~--~~~-~l~~~~~~~ 153 (169)
...++ +++||+.+.+... .+...+|+++|+||||++++....... .+. ..+..++++
T Consensus 100 -----------------~~~~i-vv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 100 -----------------ARAKV-IVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp -----------------HHCSE-EEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEE
T ss_pred -----------------cCCCE-EEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEE
Confidence 23456 9999999987544 445568999999999999865332221 111 235788999
Q ss_pred EeccCCCCCchh
Q psy1090 154 LTGWYYPNKWSK 165 (169)
Q Consensus 154 lT~TP~~n~~~e 165 (169)
|||||. |+..+
T Consensus 162 lTaTp~-~~~~~ 172 (494)
T 1wp9_A 162 LTASPG-STPEK 172 (494)
T ss_dssp EESCSC-SSHHH
T ss_pred EecCCC-CCcHH
Confidence 999999 44333
No 6
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=1.2e-21 Score=142.84 Aligned_cols=132 Identities=19% Similarity=0.170 Sum_probs=94.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhcC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALSL 78 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 78 (169)
+++|+++||+|||.+++.++......+ .+++||++|. .++.||.+++.+|.. ...+....+......
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~--------- 199 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD--------- 199 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHC-SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---------
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---------
Confidence 368899999999999988776655433 4589999997 788999999999963 334444444321110
Q ss_pred CCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhcc-ccccEEEEecc
Q psy1090 79 PTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTAL-RATFKVLLTGW 157 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l-~~~~~~~lT~T 157 (169)
......++ +++||+.+.+.... ....++++|+||||++.++ .....+..+ +..++++||||
T Consensus 200 --------------~~~~~~~I-~v~T~~~l~~~~~~-~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSAT 261 (282)
T 1rif_A 200 --------------KYKNDAPV-VVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGS 261 (282)
T ss_dssp --------------CCCTTCSE-EEECHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSS
T ss_pred --------------hhccCCcE-EEEchHHHHhhHHH-HHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCC
Confidence 01145666 99999998776432 2247899999999999753 445566666 68899999999
Q ss_pred CCCC
Q psy1090 158 YYPN 161 (169)
Q Consensus 158 P~~n 161 (169)
|..+
T Consensus 262 p~~~ 265 (282)
T 1rif_A 262 LRDG 265 (282)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 9644
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.85 E-value=7e-21 Score=147.68 Aligned_cols=121 Identities=21% Similarity=0.213 Sum_probs=95.7
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhcCC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVR-TVKYYGNAIERKALQSEALSLP 79 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 79 (169)
+++|+++||+|||.+++..+... ..++||+||. .++.||.+++.+| +.. +..++|...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~v~~~~g~~~------------- 169 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRIK------------- 169 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG--CGGGEEEBSSSCB-------------
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhC--CCcceEEECCCcC-------------
Confidence 37899999999999988877654 4689999999 8889999999995 556 777766532
Q ss_pred CcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhccccccEEEEeccCC
Q psy1090 80 TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYY 159 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~lT~TP~ 159 (169)
...++ +++||+.+......+. ..|+++|+||||++.++.. ...+..+++.++++|||||.
T Consensus 170 ----------------~~~~I-vv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~--~~~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 170 ----------------ELKPL-TVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESY--VQIAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp ----------------CCCSE-EEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTT--HHHHHTCCCSEEEEEESCCC
T ss_pred ----------------CcCCE-EEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHH--HHHHHhcCCCeEEEEecCcc
Confidence 23456 9999999887665442 3599999999999987654 34566678899999999999
Q ss_pred CCC
Q psy1090 160 PNK 162 (169)
Q Consensus 160 ~n~ 162 (169)
+++
T Consensus 230 ~~~ 232 (472)
T 2fwr_A 230 RED 232 (472)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 8
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=1.3e-20 Score=134.20 Aligned_cols=122 Identities=21% Similarity=0.206 Sum_probs=91.2
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVR-TVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
+++..++|+|||.+++.++... .+++||++|. .++.||.+++.+| +.. +..+.|...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~--~~~~v~~~~g~~~-------------- 169 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF--GEEYVGEFSGRIK-------------- 169 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGG--CGGGEEEESSSCB--------------
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhC--CCCeEEEEeCCCC--------------
Confidence 6788999999999988776542 4689999998 7788999999985 455 666666532
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhccccccEEEEeccCCC
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYP 160 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~lT~TP~~ 160 (169)
...++ +++||+.+......+. ..|+++|+||+|++.+.. ..+.+..++..++++|||||.+
T Consensus 170 ---------------~~~~i-~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~LSATp~r 230 (237)
T 2fz4_A 170 ---------------ELKPL-TVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLGLTATFER 230 (237)
T ss_dssp ---------------CCCSE-EEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCCSEEEEEEESCC-
T ss_pred ---------------CcCCE-EEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccCCEEEEEecCCCC
Confidence 23456 9999999887665442 358999999999997643 3455566788999999999998
Q ss_pred CCch
Q psy1090 161 NKWS 164 (169)
Q Consensus 161 n~~~ 164 (169)
++-.
T Consensus 231 ~D~~ 234 (237)
T 2fz4_A 231 EDGR 234 (237)
T ss_dssp ----
T ss_pred CCCC
Confidence 8644
No 9
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.84 E-value=1.2e-20 Score=148.41 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=102.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCC---CCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQA---LEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEA 75 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~---~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~ 75 (169)
+++++++||+|||++++..+........ ..++|||+|. .+..||.+++.++++ +..+..++|............
T Consensus 21 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 100 (555)
T 3tbk_A 21 NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII 100 (555)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh
Confidence 5789999999999998888776665544 6789999998 888999999999875 678888888764332211111
Q ss_pred hcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--c-ccccccEEEEeCCcccCCcccHHHHHHhcc------
Q psy1090 76 LSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--L-KKITWNCIIVDEGHSVKNKKSKLSIKLTAL------ 146 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~-~~~~~~~vi~DEah~~k~~~~~~~~~~~~l------ 146 (169)
...++ +++|++.+.+.... + .-..++++|+||||++.+...........+
T Consensus 101 --------------------~~~~i-~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 101 --------------------EDNDI-IILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp --------------------HHCSE-EEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred --------------------cCCCE-EEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 33556 99999998765432 2 234689999999999987654222111222
Q ss_pred ---ccccEEEEeccCCCCCchh
Q psy1090 147 ---RATFKVLLTGWYYPNKWSK 165 (169)
Q Consensus 147 ---~~~~~~~lT~TP~~n~~~e 165 (169)
....+++|||||.+++..+
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~ 181 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKT 181 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCS
T ss_pred ccCCCCeEEEEecCcccCcccc
Confidence 2357999999998876444
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.84 E-value=1.7e-20 Score=147.74 Aligned_cols=142 Identities=16% Similarity=0.144 Sum_probs=100.0
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCC---CCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQA---LEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEA 75 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~---~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~ 75 (169)
+++++++||+|||++++..+........ ..++||++|. .+..||.+++.++++ +.++..++|............
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI 103 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh
Confidence 4789999999999998887776665544 5789999998 788999999999976 678888888764332222111
Q ss_pred hcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--c-ccccccEEEEeCCcccCCcccHHHHHH-hcc-----
Q psy1090 76 LSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--L-KKITWNCIIVDEGHSVKNKKSKLSIKL-TAL----- 146 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~-~~~~~~~vi~DEah~~k~~~~~~~~~~-~~l----- 146 (169)
...++ +++|++.+.+.... + ....++++|+||||++.+... ....+ ..+
T Consensus 104 --------------------~~~~i-~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 104 --------------------EDSDI-IVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFN 161 (556)
T ss_dssp --------------------HHCSE-EEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHHHHHC
T ss_pred --------------------CCCCE-EEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHHhhhc
Confidence 33556 99999998865432 2 334689999999999987654 22222 211
Q ss_pred ---ccccEEEEeccCCCCCchh
Q psy1090 147 ---RATFKVLLTGWYYPNKWSK 165 (169)
Q Consensus 147 ---~~~~~~~lT~TP~~n~~~e 165 (169)
+...+++|||||.+++..+
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~ 183 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKN 183 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSS
T ss_pred ccCCCCeEEEEeCCcccCchhh
Confidence 2367999999998766443
No 11
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.83 E-value=9.6e-21 Score=148.20 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=95.3
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHhhhcC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKF--APFVRTVKYYGNAIERKALQSEALSL 78 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~ 78 (169)
+++|+++||+|||.+++..+......+ .+++||++|. .+..||.+++.+| .+...+....|.......
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 200 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------- 200 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHHHC-SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG--------
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHhCC-CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc--------
Confidence 579999999999999987766555433 3599999998 6788999999998 455566666654322111
Q ss_pred CCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhcc-ccccEEEEecc
Q psy1090 79 PTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTAL-RATFKVLLTGW 157 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l-~~~~~~~lT~T 157 (169)
.....++ +++|++.+.+.... .-.+++++|+||||++.+ ......+..+ ++..+++||||
T Consensus 201 ---------------~~~~~~I-~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~--~~~~~il~~~~~~~~~l~lSAT 261 (510)
T 2oca_A 201 ---------------YKNDAPV-VVGTWQTVVKQPKE-WFSQFGMMMNDECHLATG--KSISSIISGLNNCMFKFGLSGS 261 (510)
T ss_dssp ---------------GCTTCSE-EEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCH--HHHHHHGGGCTTCCEEEEEESC
T ss_pred ---------------cccCCcE-EEEeHHHHhhchhh-hhhcCCEEEEECCcCCCc--ccHHHHHHhcccCcEEEEEEeC
Confidence 1155677 99999998765322 224789999999999975 3344455666 67789999999
Q ss_pred CCC
Q psy1090 158 YYP 160 (169)
Q Consensus 158 P~~ 160 (169)
|..
T Consensus 262 p~~ 264 (510)
T 2oca_A 262 LRD 264 (510)
T ss_dssp GGG
T ss_pred CCC
Confidence 943
No 12
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.83 E-value=4.6e-20 Score=151.20 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=101.1
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCC---CCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQA---LEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEA 75 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~---~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~ 75 (169)
+++++++||+|||++++..+........ .+++|||||. .++.||.+++.++++ +.++..++|............
T Consensus 265 ~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 344 (797)
T 4a2q_A 265 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI 344 (797)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh
Confidence 5789999999999998888776666544 6789999997 688999999999986 788888888764433222211
Q ss_pred hcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--c-ccccccEEEEeCCcccCCcccHHHHHHhcc------
Q psy1090 76 LSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--L-KKITWNCIIVDEGHSVKNKKSKLSIKLTAL------ 146 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~-~~~~~~~vi~DEah~~k~~~~~~~~~~~~l------ 146 (169)
...++ +++|++.+.+.... + .-..++++|+||||++.+... ....+..+
T Consensus 345 --------------------~~~~I-vv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 345 --------------------EDSDI-IVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFN 402 (797)
T ss_dssp --------------------HTCSE-EEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHHHHHHT
T ss_pred --------------------CCCCE-EEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHHHHhhc
Confidence 44566 99999998765432 2 234689999999999987654 22222221
Q ss_pred ---ccccEEEEeccCCCCCchh
Q psy1090 147 ---RATFKVLLTGWYYPNKWSK 165 (169)
Q Consensus 147 ---~~~~~~~lT~TP~~n~~~e 165 (169)
....+++|||||.+++..+
T Consensus 403 ~~~~~~~~l~lSATp~~~~~~~ 424 (797)
T 4a2q_A 403 SASQLPQILGLTASVGVGNAKN 424 (797)
T ss_dssp TCCCCCEEEEEESCCCCTTCCS
T ss_pred cCCCCCeEEEEcCCcccccccc
Confidence 2367999999998765443
No 13
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.82 E-value=9e-20 Score=147.37 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=99.9
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCC---CceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQAL---EPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEA 75 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~---~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~ 75 (169)
+++++++||+|||++++..+......... +++||++|. .+..||.+++.++.+ +.++..++|....+.......
T Consensus 30 ~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 109 (696)
T 2ykg_A 30 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV 109 (696)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc
Confidence 57899999999999988777655544432 689999997 888999999999986 678888887643321111111
Q ss_pred hcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--c-ccccccEEEEeCCcccCCcccHHHHHHhcc------
Q psy1090 76 LSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--L-KKITWNCIIVDEGHSVKNKKSKLSIKLTAL------ 146 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~-~~~~~~~vi~DEah~~k~~~~~~~~~~~~l------ 146 (169)
...++ +++|++.+.+.... + ....++++|+||||++.+...........+
T Consensus 110 --------------------~~~~I-iv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~ 168 (696)
T 2ykg_A 110 --------------------ENNDI-IILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGG 168 (696)
T ss_dssp --------------------HTCSE-EEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTT
T ss_pred --------------------cCCCE-EEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcc
Confidence 34566 99999999775442 2 344789999999999987653222221111
Q ss_pred ---ccccEEEEeccCCCCCc
Q psy1090 147 ---RATFKVLLTGWYYPNKW 163 (169)
Q Consensus 147 ---~~~~~~~lT~TP~~n~~ 163 (169)
....+++|||||..++.
T Consensus 169 ~~~~~~~il~LTATp~~~~~ 188 (696)
T 2ykg_A 169 SSGPLPQVIGLTASVGVGDA 188 (696)
T ss_dssp CCSCCCEEEEEESCCCCSSC
T ss_pred cCCCCCeEEEEeCccccCcc
Confidence 45789999999986543
No 14
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.81 E-value=4e-20 Score=153.57 Aligned_cols=143 Identities=16% Similarity=0.140 Sum_probs=100.1
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCC---CCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQA---LEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEA 75 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~---~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~ 75 (169)
+++++++||+|||++++..+........ .+++|||+|. .++.||.+++.++++ +.++..++|............
T Consensus 265 ~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~ 344 (936)
T 4a2w_A 265 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI 344 (936)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc
Confidence 5789999999999998877765544433 5789999997 688999999999986 788888888764432211111
Q ss_pred hcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--c-ccccccEEEEeCCcccCCcccHHHHHHhcc------
Q psy1090 76 LSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--L-KKITWNCIIVDEGHSVKNKKSKLSIKLTAL------ 146 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~-~~~~~~~vi~DEah~~k~~~~~~~~~~~~l------ 146 (169)
...++ +++|++.+.+.... + ....++++|+||||++.+... ....+..+
T Consensus 345 --------------------~~~~I-vI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 345 --------------------EDSDI-IVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFN 402 (936)
T ss_dssp --------------------HHCSE-EEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHT
T ss_pred --------------------cCCCE-EEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHHHHhhc
Confidence 33566 99999999865432 2 233689999999999987654 23222222
Q ss_pred ---ccccEEEEeccCCCCCchhh
Q psy1090 147 ---RATFKVLLTGWYYPNKWSKQ 166 (169)
Q Consensus 147 ---~~~~~~~lT~TP~~n~~~el 166 (169)
....+++|||||.+++..++
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l 425 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNI 425 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSH
T ss_pred cCCCcCeEEEecCCcccccchhH
Confidence 23679999999988765443
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.81 E-value=1.7e-20 Score=149.23 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=82.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhC-------CCCceEEEecC-cchHHHH-HHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQ-------ALEPNLIVCPL-SVLNNWE-AEFRKFAPFVRTVKYYGNAIERKALQS 73 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~-------~~~~~Liv~P~-~~l~qW~-~e~~~~~~~~~~~~~~g~~~~~~~~~~ 73 (169)
++++++||+|||++++.++..+...+ ..+++||+||. .+..||. +++..|.+.... ..+..
T Consensus 201 ~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~--~~~~~-------- 270 (590)
T 3h1t_A 201 SLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARHK--IEGGK-------- 270 (590)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTCSSEEE--CCC----------
T ss_pred eEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcchhhhh--hhccC--------
Confidence 68999999999999998888777665 66899999995 7778999 788877643221 11110
Q ss_pred hhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhch------hccccccccEEEEeCCcccCCcc-cHHHHHHhcc
Q psy1090 74 EALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDF------GFLKKITWNCIIVDEGHSVKNKK-SKLSIKLTAL 146 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~------~~~~~~~~~~vi~DEah~~k~~~-~~~~~~~~~l 146 (169)
.....++ +++||+.+.... ..+....|+++|+||||++.+.. +.....+..+
T Consensus 271 --------------------~~~~~~I-~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~ 329 (590)
T 3h1t_A 271 --------------------VVKSREI-YFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYF 329 (590)
T ss_dssp --------------------CCSSCSE-EEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHS
T ss_pred --------------------CCCCCcE-EEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhC
Confidence 0145567 999999987642 23334568999999999997643 3334555667
Q ss_pred ccccEEEEeccCCCCCchhh
Q psy1090 147 RATFKVLLTGWYYPNKWSKQ 166 (169)
Q Consensus 147 ~~~~~~~lT~TP~~n~~~el 166 (169)
+...+++|||||..+...++
T Consensus 330 ~~~~~l~lTATP~~~~~~~~ 349 (590)
T 3h1t_A 330 EPAFQIGMTATPLREDNRDT 349 (590)
T ss_dssp TTSEEEEEESSCSCTTTHHH
T ss_pred CcceEEEeccccccccchhH
Confidence 77899999999998765543
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.80 E-value=5e-20 Score=148.91 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=95.9
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCC----CCceEEEecC-cchHHH-HHHHHHhCCC-ceEEEEeCCHHHHHHHHHh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQA----LEPNLIVCPL-SVLNNW-EAEFRKFAPF-VRTVKYYGNAIERKALQSE 74 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~----~~~~Liv~P~-~~l~qW-~~e~~~~~~~-~~~~~~~g~~~~~~~~~~~ 74 (169)
+++++++||+|||++++..+......+. .+++|||+|. .++.|| .+++.++.+. ..+..++|...........
T Consensus 24 ~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~ 103 (699)
T 4gl2_A 24 NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEV 103 (699)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhh
Confidence 5789999999999998887765544332 3789999997 578899 9999999865 8888888865432211111
Q ss_pred hhcCCCcccccccCCccccccCCCCeEEEecHHHHHhch--------hccccccccEEEEeCCcccCCccc--HHHH-HH
Q psy1090 75 ALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDF--------GFLKKITWNCIIVDEGHSVKNKKS--KLSI-KL 143 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~--------~~~~~~~~~~vi~DEah~~k~~~~--~~~~-~~ 143 (169)
. ...++ +++|++.+.+.. ..+....|+++|+||||++..... .... .+
T Consensus 104 ~--------------------~~~~I-lv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 104 V--------------------KSCDI-IISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp H--------------------HSCSE-EEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred h--------------------cCCCE-EEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 1 44566 999999998644 223445789999999998754321 1111 11
Q ss_pred hc-c-------------ccccEEEEeccCCCCCc
Q psy1090 144 TA-L-------------RATFKVLLTGWYYPNKW 163 (169)
Q Consensus 144 ~~-l-------------~~~~~~~lT~TP~~n~~ 163 (169)
.. + ....+++|||||..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~ 196 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGA 196 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSC
T ss_pred HhhhcccccccccccCCCCCEEEEeccccccccc
Confidence 11 1 44679999999998744
No 17
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=4e-18 Score=119.78 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=93.3
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCC-CCceEEEecC-cchHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQA-LEPNLIVCPL-SVLNNWEAEFRKFA---PFVRTVKYYGNAIERKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~-~~~~Liv~P~-~~l~qW~~e~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 76 (169)
++++..++|+|||..++..+........ ..++||++|. .+..||.++++++. ++.++..+.|.............
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 132 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc
Confidence 4688999999999887766554433322 3489999998 77889999999886 46788888876443332222111
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCccc---HHHHHHhccc-ccc
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKKS---KLSIKLTALR-ATF 150 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~~---~~~~~~~~l~-~~~ 150 (169)
...++ +++|++.+..... .+.-..++++|+||||++..... .....+..++ ...
T Consensus 133 -------------------~~~~i-~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~ 192 (220)
T 1t6n_A 133 -------------------NCPHI-VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ 192 (220)
T ss_dssp -------------------SCCSE-EEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSE
T ss_pred -------------------CCCCE-EEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCe
Confidence 34566 9999998865432 22234688999999998854211 1122233343 567
Q ss_pred EEEEeccCCCC
Q psy1090 151 KVLLTGWYYPN 161 (169)
Q Consensus 151 ~~~lT~TP~~n 161 (169)
.+++||||..+
T Consensus 193 ~i~~SAT~~~~ 203 (220)
T 1t6n_A 193 VMMFSATLSKE 203 (220)
T ss_dssp EEEEESCCCTT
T ss_pred EEEEEeecCHH
Confidence 89999999654
No 18
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.77 E-value=5e-18 Score=118.06 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=93.5
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh----CCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE----QALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~----~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 76 (169)
++++..++|+|||.+++..+...... +...++||++|. .+..||.+++.++.+..++..+.|............
T Consensus 40 ~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 118 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL- 118 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH-
T ss_pred CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh-
Confidence 46888999999998865554433321 234579999998 778899999999998888888777544332222211
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc--cHHHHHHhccc-cccE
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK--SKLSIKLTALR-ATFK 151 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l~-~~~~ 151 (169)
...++ +++|++.+.+... .+.-..++++|+||||++.... ......+..++ ....
T Consensus 119 -------------------~~~~i-~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 178 (207)
T 2gxq_A 119 -------------------RGADA-VVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 178 (207)
T ss_dssp -------------------HCCSE-EEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEE
T ss_pred -------------------CCCCE-EEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeE
Confidence 34566 9999988865432 2233468999999999875432 22233334443 4568
Q ss_pred EEEeccCCC
Q psy1090 152 VLLTGWYYP 160 (169)
Q Consensus 152 ~~lT~TP~~ 160 (169)
+++||||..
T Consensus 179 i~~SAT~~~ 187 (207)
T 2gxq_A 179 LLFSATLPS 187 (207)
T ss_dssp EEECSSCCH
T ss_pred EEEEEecCH
Confidence 999999854
No 19
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=122.14 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=83.4
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh----CCCCceEEEecC-cchHH-HHHHHHHhCC-CceEEEEeCCHHHHHHHHHh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE----QALEPNLIVCPL-SVLNN-WEAEFRKFAP-FVRTVKYYGNAIERKALQSE 74 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~----~~~~~~Liv~P~-~~l~q-W~~e~~~~~~-~~~~~~~~g~~~~~~~~~~~ 74 (169)
++++..++|+|||+.++..+...... ....++||+||. .+..| |.+++.++.+ ...+..+.|...........
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 129 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEV 129 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhh
Confidence 47889999999999988777655433 225689999998 56678 9899998874 46677666654322111110
Q ss_pred hhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--------cccccccEEEEeCCcccCCcccHHHHHHhcc
Q psy1090 75 ALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--------LKKITWNCIIVDEGHSVKNKKSKLSIKLTAL 146 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--------~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l 146 (169)
. ...++ +++|++.+...... +....++++|+||||++...... ...+..+
T Consensus 130 ~--------------------~~~~i-~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~-~~~~~~~ 187 (216)
T 3b6e_A 130 V--------------------KSCDI-IISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY-NNIMRHY 187 (216)
T ss_dssp H--------------------HHCSE-EEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH-HHHHHHH
T ss_pred c--------------------cCCCE-EEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH-HHHHHHH
Confidence 0 23456 99999998765433 22357899999999998643222 2221111
Q ss_pred ------------------ccccEEEEecc
Q psy1090 147 ------------------RATFKVLLTGW 157 (169)
Q Consensus 147 ------------------~~~~~~~lT~T 157 (169)
...+.++||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 34678999998
No 20
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=118.04 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=91.9
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-----CCCCceEEEecC-cchHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-----QALEPNLIVCPL-SVLNNWEAEFRKFAPF--VRTVKYYGNAIERKALQS 73 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-----~~~~~~Liv~P~-~~l~qW~~e~~~~~~~--~~~~~~~g~~~~~~~~~~ 73 (169)
++++..++|+|||+.++..+...... ....++||++|. .+..||.+++.++... ..+..+.|..........
T Consensus 64 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 143 (236)
T 2pl3_A 64 DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER 143 (236)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh
Confidence 46889999999999866554433322 234579999998 7788999999998743 677777776543322221
Q ss_pred hhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc---cccccccEEEEeCCcccCCcc--cHHHHHHhccc-
Q psy1090 74 EALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF---LKKITWNCIIVDEGHSVKNKK--SKLSIKLTALR- 147 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~---~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l~- 147 (169)
. ...++ +++|++.+...... +....++++|+||||++.+.+ ......+..++
T Consensus 144 ~---------------------~~~~i-iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~ 201 (236)
T 2pl3_A 144 I---------------------NNINI-LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 201 (236)
T ss_dssp H---------------------TTCSE-EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT
T ss_pred C---------------------CCCCE-EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC
Confidence 1 34566 99999998654432 233478899999999876433 23334445554
Q ss_pred cccEEEEeccCCC
Q psy1090 148 ATFKVLLTGWYYP 160 (169)
Q Consensus 148 ~~~~~~lT~TP~~ 160 (169)
....+++|||+..
T Consensus 202 ~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 202 KRQTLLFSATQTK 214 (236)
T ss_dssp TSEEEEEESSCCH
T ss_pred CCeEEEEEeeCCH
Confidence 4558999999854
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.74 E-value=9.8e-18 Score=125.47 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=95.2
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhcC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALSL 78 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 78 (169)
++++..++|+|||.+++..+......+...++||++|. .+..||.+++.++.+ ...+....|...........
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---- 121 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---- 121 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH----
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc----
Confidence 36788999999999887766655444456689999998 677899999999874 45666666654433322211
Q ss_pred CCcccccccCCccccccCCCCeEEEecHHHHHhchhc--cccccccEEEEeCCcccCCccc--HHHHHHhcc-ccccEEE
Q psy1090 79 PTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--LKKITWNCIIVDEGHSVKNKKS--KLSIKLTAL-RATFKVL 153 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~~~~~~~~vi~DEah~~k~~~~--~~~~~~~~l-~~~~~~~ 153 (169)
...++ +++|++.+.+.... +...+++++|+||||++.+... .....+..+ +....++
T Consensus 122 -----------------~~~~i-iv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~ 183 (367)
T 1hv8_A 122 -----------------KNANI-VVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILL 183 (367)
T ss_dssp -----------------HTCSE-EEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEE
T ss_pred -----------------CCCCE-EEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEE
Confidence 23456 99999998765432 2334789999999999865442 122333334 4567799
Q ss_pred EeccCCCC
Q psy1090 154 LTGWYYPN 161 (169)
Q Consensus 154 lT~TP~~n 161 (169)
+||||..+
T Consensus 184 ~SAT~~~~ 191 (367)
T 1hv8_A 184 FSATMPRE 191 (367)
T ss_dssp ECSSCCHH
T ss_pred EeeccCHH
Confidence 99999754
No 22
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.74 E-value=2e-17 Score=117.06 Aligned_cols=137 Identities=12% Similarity=0.144 Sum_probs=92.2
Q ss_pred CccccCCCCCcHHHHHHHH-HHHHHHhCCCCceEEEecC-cchHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAF-FCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFA---PFVRTVKYYGNAIERKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~-i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 76 (169)
++++..++|+|||+..+.. +..+...+...++||++|. .+..||.+++.++. ++.++..+.|...........
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 140 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-- 140 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT--
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc--
Confidence 4688999999999885443 3333333445689999998 78889999999986 367788888764433222111
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc---cHHHHHHhccc-ccc
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK---SKLSIKLTALR-ATF 150 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~---~~~~~~~~~l~-~~~ 150 (169)
...++ +++|++.+..... .+....++++|+||||++...+ ......+..++ ...
T Consensus 141 -------------------~~~~I-iv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~ 200 (230)
T 2oxc_A 141 -------------------KKCHI-AVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQ 200 (230)
T ss_dssp -------------------TSCSE-EEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCE
T ss_pred -------------------cCCCE-EEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCe
Confidence 34566 9999999865432 2223467899999999985432 22223344554 456
Q ss_pred EEEEeccCCC
Q psy1090 151 KVLLTGWYYP 160 (169)
Q Consensus 151 ~~~lT~TP~~ 160 (169)
.+++|||+-.
T Consensus 201 ~l~lSAT~~~ 210 (230)
T 2oxc_A 201 MLAVSATYPE 210 (230)
T ss_dssp EEEEESCCCH
T ss_pred EEEEEeccCH
Confidence 8999999753
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.73 E-value=2.7e-17 Score=124.26 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=94.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecC-cchHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPL-SVLNNWEAEFRKFA---PFVRTVKYYGNAIERKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~-~~l~qW~~e~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 76 (169)
++++..++|+|||++++..+...... ....++||+||. .+..||.+++.++. |+.++..+.|.............
T Consensus 47 ~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 126 (391)
T 1xti_A 47 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 126 (391)
T ss_dssp CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc
Confidence 47889999999998876665544332 234589999998 77889999999886 46788888876543332222111
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--cccccccEEEEeCCcccCCcccHH--H-HHHhcc-cccc
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--LKKITWNCIIVDEGHSVKNKKSKL--S-IKLTAL-RATF 150 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~~~~~~~~vi~DEah~~k~~~~~~--~-~~~~~l-~~~~ 150 (169)
...++ +++|++.+...... +....++++|+||||++....... . ..+... ....
T Consensus 127 -------------------~~~~i-iv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 186 (391)
T 1xti_A 127 -------------------NCPHI-VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ 186 (391)
T ss_dssp -------------------SCCSE-EEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSE
T ss_pred -------------------CCCCE-EEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCce
Confidence 34566 99999998754322 233578999999999987532211 1 222233 3566
Q ss_pred EEEEeccCCCC
Q psy1090 151 KVLLTGWYYPN 161 (169)
Q Consensus 151 ~~~lT~TP~~n 161 (169)
.+++||||..+
T Consensus 187 ~i~~SAT~~~~ 197 (391)
T 1xti_A 187 VMMFSATLSKE 197 (391)
T ss_dssp EEEEESSCCST
T ss_pred EEEEEeeCCHH
Confidence 89999999754
No 24
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.72 E-value=1.1e-17 Score=117.57 Aligned_cols=142 Identities=16% Similarity=0.150 Sum_probs=91.7
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHH-hCCCCceEEEecC-cchHHHHHHHHHhCC------CceEEEEeCCHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIE-EQALEPNLIVCPL-SVLNNWEAEFRKFAP------FVRTVKYYGNAIERKALQS 73 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~-~~~~~~~Liv~P~-~~l~qW~~e~~~~~~------~~~~~~~~g~~~~~~~~~~ 73 (169)
++++..++|+|||..++..+..... .+...++||++|. .+..||.+++.++.. ...+..+.|..........
T Consensus 43 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 122 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK 122 (219)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH
Confidence 4678999999999886554433322 2334589999998 777899999988864 4566666665433221100
Q ss_pred hhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc--cHHHHHHhccc-c
Q psy1090 74 EALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK--SKLSIKLTALR-A 148 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l~-~ 148 (169)
.....++ +++|++.+..... .+....++++|+||||++...+ ......+..++ .
T Consensus 123 --------------------~~~~~~I-iv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 181 (219)
T 1q0u_A 123 --------------------LNVQPHI-VIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKD 181 (219)
T ss_dssp --------------------CSSCCSE-EEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred --------------------cCCCCCE-EEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcc
Confidence 0135667 9999988875432 2223467899999999876432 22333444553 4
Q ss_pred ccEEEEeccCCCCCchh
Q psy1090 149 TFKVLLTGWYYPNKWSK 165 (169)
Q Consensus 149 ~~~~~lT~TP~~n~~~e 165 (169)
...+++|||+. +.+.+
T Consensus 182 ~~~l~~SAT~~-~~~~~ 197 (219)
T 1q0u_A 182 LQMLVFSATIP-EKLKP 197 (219)
T ss_dssp CEEEEEESCCC-GGGHH
T ss_pred cEEEEEecCCC-HHHHH
Confidence 56899999984 44444
No 25
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.72 E-value=7.4e-17 Score=112.09 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=91.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHH-hCCCCceEEEecC-cchHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIE-EQALEPNLIVCPL-SVLNNWEAEFRKFAP---FVRTVKYYGNAIERKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~-~~~~~~~Liv~P~-~~l~qW~~e~~~~~~---~~~~~~~~g~~~~~~~~~~~~~ 76 (169)
++++..++|+|||..++..+..... .....++||++|. .+..||.+++.++.. +..+....|............
T Consensus 42 ~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 120 (206)
T 1vec_A 42 DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD- 120 (206)
T ss_dssp CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT-
T ss_pred CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC-
Confidence 4688899999999876654443322 2334579999998 677899999988863 567777777654443322211
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCccc--HHHHHHhccc-cccE
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKKS--KLSIKLTALR-ATFK 151 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~~--~~~~~~~~l~-~~~~ 151 (169)
...++ +++|++.+..... ...-..++++|+||||++...+- .....+..++ ....
T Consensus 121 -------------------~~~~i-~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~ 180 (206)
T 1vec_A 121 -------------------DTVHV-VIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 180 (206)
T ss_dssp -------------------SCCSE-EEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEE
T ss_pred -------------------CCCCE-EEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceE
Confidence 45667 9999998865433 12234678999999998765332 1122333443 5678
Q ss_pred EEEeccCCC
Q psy1090 152 VLLTGWYYP 160 (169)
Q Consensus 152 ~~lT~TP~~ 160 (169)
+++|||+..
T Consensus 181 l~~SAT~~~ 189 (206)
T 1vec_A 181 LLYSATFPL 189 (206)
T ss_dssp EEEESCCCH
T ss_pred EEEEeeCCH
Confidence 999999953
No 26
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.72 E-value=6e-17 Score=123.64 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=96.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC-CceEEEEeCCHHH---HHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP-FVRTVKYYGNAIE---RKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~-~~~~~~~~g~~~~---~~~~~~~~~ 76 (169)
+.++..++|+|||+.++..+.... ....++||++|. .+..||.+++.++.+ +.++..++|.... .........
T Consensus 38 ~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~ 115 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE 115 (414)
T ss_dssp CEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc
Confidence 468889999999995554443332 445789999998 778899999999875 6788888876543 111221111
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCC-------------cccH-HHHH
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKN-------------KKSK-LSIK 142 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~-------------~~~~-~~~~ 142 (169)
+..++ +++|++.+.+....+....++++|+||||++.. .... ....
T Consensus 116 -------------------~~~~I-iv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i 175 (414)
T 3oiy_A 116 -------------------DDYHI-LVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 175 (414)
T ss_dssp -------------------TCCSE-EEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred -------------------CCCCE-EEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHH
Confidence 44677 999999998776666666899999999997632 2222 2222
Q ss_pred Hhcc------------ccccEEEEeccCCCCCch
Q psy1090 143 LTAL------------RATFKVLLTGWYYPNKWS 164 (169)
Q Consensus 143 ~~~l------------~~~~~~~lT~TP~~n~~~ 164 (169)
+..+ .....+++||||.++...
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 176 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred HHhcccchhhhhcccCCCceEEEEecCCCcchhH
Confidence 2222 445788999997776554
No 27
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.72 E-value=7.3e-17 Score=115.60 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=92.9
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
+.++..++|+|||.+++..+...... ....++||++|. .+..||.+++.++.. +..+..+.|............
T Consensus 82 ~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 159 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA-- 159 (249)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH--
T ss_pred CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc--
Confidence 46788999999998866555443333 334579999998 677899999998864 566777777544332222211
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchhc---cccccccEEEEeCCcccCCcc--cHHHHHHhccc-cccE
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF---LKKITWNCIIVDEGHSVKNKK--SKLSIKLTALR-ATFK 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~---~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l~-~~~~ 151 (169)
...++ +++|++.+.+.... +.-..++++|+||||++.+.+ ......+..++ ....
T Consensus 160 ------------------~~~~I-~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~ 220 (249)
T 3ber_A 160 ------------------KKPHI-IIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 220 (249)
T ss_dssp ------------------TCCSE-EEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEE
T ss_pred ------------------CCCCE-EEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeE
Confidence 45677 99999998664432 223467899999999876432 22234444553 5668
Q ss_pred EEEeccCCC
Q psy1090 152 VLLTGWYYP 160 (169)
Q Consensus 152 ~~lT~TP~~ 160 (169)
+++|||+..
T Consensus 221 l~~SAT~~~ 229 (249)
T 3ber_A 221 FLFSATMTK 229 (249)
T ss_dssp EEEESSCCH
T ss_pred EEEeccCCH
Confidence 999999864
No 28
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.71 E-value=1.1e-16 Score=114.74 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=90.0
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhC----------CCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQ----------ALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIER 68 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~----------~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~ 68 (169)
++++..++|+|||+.++..+....... ...++||++|. .+..||.+++.++.. ...+....|.....
T Consensus 62 ~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 141 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 141 (253)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSH
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHH
Confidence 467889999999988765554433321 12479999998 778899999998864 35666666654333
Q ss_pred HHHHHhhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--cccccccEEEEeCCcccCCcc--cHHHHHHh
Q psy1090 69 KALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--LKKITWNCIIVDEGHSVKNKK--SKLSIKLT 144 (169)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~~~~~~~~vi~DEah~~k~~~--~~~~~~~~ 144 (169)
....... ...++ +++|++.+...... +.-..++++|+||||++...+ ......+.
T Consensus 142 ~~~~~~~--------------------~~~~I-vv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~ 200 (253)
T 1wrb_A 142 SQIREVQ--------------------MGCHL-LVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIE 200 (253)
T ss_dssp HHHHHHS--------------------SCCSE-EEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhC--------------------CCCCE-EEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHh
Confidence 3222211 45677 99999998754332 223457899999999875432 22333344
Q ss_pred cc--c---cccEEEEeccCCC
Q psy1090 145 AL--R---ATFKVLLTGWYYP 160 (169)
Q Consensus 145 ~l--~---~~~~~~lT~TP~~ 160 (169)
.+ . ....+++||||-.
T Consensus 201 ~~~~~~~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 201 ESNMPSGINRQTLMFSATFPK 221 (253)
T ss_dssp SSCCCCGGGCEEEEEESSCCH
T ss_pred hccCCCCCCcEEEEEEEeCCH
Confidence 32 2 3458999999854
No 29
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.71 E-value=8.3e-17 Score=113.27 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=86.7
Q ss_pred CccccCCCCCcHHHHHH-HHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVI-AFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i-~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
++++..++|+|||.+.+ .++..+.......++||++|. .+..||.+++.++.+ +..+..+.|..........
T Consensus 53 ~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---- 128 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---- 128 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC--------------
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc----
Confidence 46889999999998844 333333333445689999998 677899999999874 4566666665433221111
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCccc--HHHHHHhcc-ccccEE
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKKS--KLSIKLTAL-RATFKV 152 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~~--~~~~~~~~l-~~~~~~ 152 (169)
....++ +++|++.+..... .+....++++|+||||++...+. .....+..+ +....+
T Consensus 129 -----------------~~~~~i-iv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i 190 (224)
T 1qde_A 129 -----------------LRDAQI-VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 190 (224)
T ss_dssp -----------------CTTCSE-EEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEE
T ss_pred -----------------CCCCCE-EEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEE
Confidence 023567 9999998865432 22234678999999998754322 222333344 345689
Q ss_pred EEeccCCC
Q psy1090 153 LLTGWYYP 160 (169)
Q Consensus 153 ~lT~TP~~ 160 (169)
++|||+..
T Consensus 191 ~lSAT~~~ 198 (224)
T 1qde_A 191 LLSATMPN 198 (224)
T ss_dssp EEESSCCH
T ss_pred EEEeecCH
Confidence 99999864
No 30
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.70 E-value=7.8e-17 Score=114.55 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=86.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
++++..++|+|||..++..+...... ....++||++|. .+..||.+++.++.. +..+....|............
T Consensus 69 ~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-- 146 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ-- 146 (237)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHh--
Confidence 46889999999998865544433222 234589999998 778899999999874 455555565443322211110
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCc--ccHHHHHHhccc-cccEE
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNK--KSKLSIKLTALR-ATFKV 152 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~--~~~~~~~~~~l~-~~~~~ 152 (169)
....++ +++|++.+..... .+....++++|+||||++... .......+..++ ....+
T Consensus 147 -----------------~~~~~I-lv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i 208 (237)
T 3bor_A 147 -----------------AEAPHI-VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 208 (237)
T ss_dssp ------------------CCCSE-EEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEE
T ss_pred -----------------cCCCCE-EEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEE
Confidence 033677 9999988765432 223346889999999987432 233344445553 45679
Q ss_pred EEeccCCC
Q psy1090 153 LLTGWYYP 160 (169)
Q Consensus 153 ~lT~TP~~ 160 (169)
++|||+..
T Consensus 209 ~~SAT~~~ 216 (237)
T 3bor_A 209 LLSATMPT 216 (237)
T ss_dssp EECSSCCH
T ss_pred EEEEecCH
Confidence 99999964
No 31
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=121.70 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=93.7
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
++++..++|+|||++++..+...... ....++||++|. .+..||.+++.++.. +..+....|.............
T Consensus 79 ~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (414)
T 3eiq_A 79 DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM- 157 (414)
T ss_dssp CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTT-
T ss_pred CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhc-
Confidence 46889999999999876655544333 245689999998 677899999998863 4555555555444333332211
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--cccccccEEEEeCCcccCCcc--cHHHHHHhcc-ccccEE
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--LKKITWNCIIVDEGHSVKNKK--SKLSIKLTAL-RATFKV 152 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l-~~~~~~ 152 (169)
...++ +++|++.+.+.... +....++++|+||||++.+.. ......+..+ .....+
T Consensus 158 ------------------~~~~i-iv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i 218 (414)
T 3eiq_A 158 ------------------EAPHI-IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 218 (414)
T ss_dssp ------------------TCCSE-EEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEE
T ss_pred ------------------CCCCE-EEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEE
Confidence 44566 99999887654332 334468899999999875433 2333444455 456679
Q ss_pred EEeccCCC
Q psy1090 153 LLTGWYYP 160 (169)
Q Consensus 153 ~lT~TP~~ 160 (169)
+|||||..
T Consensus 219 ~~SAT~~~ 226 (414)
T 3eiq_A 219 LLSATMPS 226 (414)
T ss_dssp EECSCCCH
T ss_pred EEEEecCH
Confidence 99999964
No 32
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.69 E-value=7.1e-17 Score=134.61 Aligned_cols=134 Identities=17% Similarity=0.079 Sum_probs=87.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
+|++.+.+|+|||++++.++..+...+...++|||||. .+..||.+++.+|.+.. + .+... ...+.....
T Consensus 302 ~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~-v---~~~~s-~~~l~~~L~---- 372 (1038)
T 2w00_A 302 GGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS-V---NGSEN-TAGLKRNLD---- 372 (1038)
T ss_dssp SEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTTSTTC-S---SSSCC-CHHHHHHHH----
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHhcccc-c---ccccC-HHHHHHHhc----
Confidence 47999999999999986665433222334689999995 78889999999987541 1 11111 111111100
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhchhc---c-ccccccEEEEeCCcccCCcccHHHHHH-hccccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF---L-KKITWNCIIVDEGHSVKNKKSKLSIKL-TALRATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~---~-~~~~~~~vi~DEah~~k~~~~~~~~~~-~~l~~~~~~~lT 155 (169)
....++ +++|++.+...... + .-..++++|+||||++.. ....+.+ ..++...+++||
T Consensus 373 --------------~~~~~I-iVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~~~~I~~~~p~a~~lgfT 435 (1038)
T 2w00_A 373 --------------KDDNKI-IVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEAQKNLKKKFKRYYQFGFT 435 (1038)
T ss_dssp --------------CSSCCE-EEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHHHHHHHHHCSSEEEEEEE
T ss_pred --------------CCCCCE-EEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHHHHHHHHhCCcccEEEEe
Confidence 034566 99999998764321 1 112678999999999753 2223333 456778999999
Q ss_pred ccCCCC
Q psy1090 156 GWYYPN 161 (169)
Q Consensus 156 ~TP~~n 161 (169)
|||...
T Consensus 436 ATP~~~ 441 (1038)
T 2w00_A 436 GTPIFP 441 (1038)
T ss_dssp SSCCCS
T ss_pred CCcccc
Confidence 999964
No 33
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.69 E-value=2.4e-16 Score=119.97 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=93.4
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHH-hCCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIE-EQALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~-~~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
++++..++|+|||.+++..+..... .....++||++|. .+..||.+++.++.. +..+....|............
T Consensus 76 ~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 153 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD-- 153 (410)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH--
T ss_pred CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh--
Confidence 4788999999999887765544332 2345689999998 678899999999874 456666666544433332221
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCccc--HHHHHHhcc-ccccEE
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKKS--KLSIKLTAL-RATFKV 152 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~~--~~~~~~~~l-~~~~~~ 152 (169)
...++ +++|++.+..... .+....++++|+||||++.+... .....+..+ .....+
T Consensus 154 ------------------~~~~i-vv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 214 (410)
T 2j0s_A 154 ------------------YGQHV-VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 214 (410)
T ss_dssp ------------------HCCSE-EEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEE
T ss_pred ------------------cCCCE-EEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEE
Confidence 33456 9999988765432 23345689999999998876442 222333344 356789
Q ss_pred EEeccCCC
Q psy1090 153 LLTGWYYP 160 (169)
Q Consensus 153 ~lT~TP~~ 160 (169)
++||||..
T Consensus 215 ~~SAT~~~ 222 (410)
T 2j0s_A 215 LISATLPH 222 (410)
T ss_dssp EEESCCCH
T ss_pred EEEcCCCH
Confidence 99999964
No 34
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.68 E-value=1.1e-16 Score=120.95 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=91.5
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHH-hCCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIE-EQALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~-~~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
++++..++|+|||++++..+..... .....++||++|. .+..||.+++.++.+ +.++..+.|...........
T Consensus 60 ~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 136 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL--- 136 (394)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH---
T ss_pred CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc---
Confidence 4688999999999886544443322 2345689999998 777899999999874 46677777754433222211
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc--cHHHHHHhcc-ccccEE
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK--SKLSIKLTAL-RATFKV 152 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l-~~~~~~ 152 (169)
...++ +++|++.+.+... .+....++++|+||||++.... ......+..+ +....+
T Consensus 137 ------------------~~~~i-~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i 197 (394)
T 1fuu_A 137 ------------------RDAQI-VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 197 (394)
T ss_dssp ------------------HHCSE-EEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEE
T ss_pred ------------------CCCCE-EEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEE
Confidence 22455 9999999865433 2334578999999999874332 2223333344 456689
Q ss_pred EEeccCCC
Q psy1090 153 LLTGWYYP 160 (169)
Q Consensus 153 ~lT~TP~~ 160 (169)
++||||..
T Consensus 198 ~~SAT~~~ 205 (394)
T 1fuu_A 198 LLSATMPN 205 (394)
T ss_dssp EECSSCCH
T ss_pred EEEEecCH
Confidence 99999964
No 35
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.68 E-value=3.8e-16 Score=118.45 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=92.7
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhC-CCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQ-ALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~-~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
++++..++|+|||++++..+....... ...++||++|. .+..||.+++.++.+ +..+....|............
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 137 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLN-- 137 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTT--
T ss_pred CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhc--
Confidence 468899999999988766655433322 34589999998 677899999999875 466777777655443332211
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCccc-HHHHHH-hcc-ccccEE
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKKS-KLSIKL-TAL-RATFKV 152 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~~-~~~~~~-~~l-~~~~~~ 152 (169)
...++ +++|++.+.+... ...-..++++|+||||++..... .....+ ..+ .....+
T Consensus 138 ------------------~~~~I-vv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i 198 (400)
T 1s2m_A 138 ------------------ETVHI-LVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL 198 (400)
T ss_dssp ------------------SCCSE-EEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEE
T ss_pred ------------------CCCCE-EEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEE
Confidence 45667 9999998865432 22234689999999998765321 112222 233 356689
Q ss_pred EEeccCCC
Q psy1090 153 LLTGWYYP 160 (169)
Q Consensus 153 ~lT~TP~~ 160 (169)
++|||+..
T Consensus 199 ~lSAT~~~ 206 (400)
T 1s2m_A 199 LFSATFPL 206 (400)
T ss_dssp EEESCCCH
T ss_pred EEEecCCH
Confidence 99999864
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.67 E-value=4.7e-16 Score=131.42 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=93.0
Q ss_pred CCccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc-chHHHHHHHHHhCCC--ceEEEEeCC--HHHHHHHHHhh
Q psy1090 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS-VLNNWEAEFRKFAPF--VRTVKYYGN--AIERKALQSEA 75 (169)
Q Consensus 1 ~g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~--~~~~~~~g~--~~~~~~~~~~~ 75 (169)
|+++++.+||+|||..++..+..... ...+++|+||.. +..||.+++.++++. .++..+.+. .+++.......
T Consensus 625 ~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l 702 (1151)
T 2eyq_A 625 MDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 702 (1151)
T ss_dssp CEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 35799999999999887754433333 236899999985 677999999988753 456666653 22222222211
Q ss_pred hcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhccc-cccEEEE
Q psy1090 76 LSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALR-ATFKVLL 154 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l~-~~~~~~l 154 (169)
.. +..++ +++|++.+.+... -.+++++|+||+|++. ......++.++ ....++|
T Consensus 703 ~~------------------g~~dI-vV~T~~ll~~~~~---~~~l~lvIiDEaH~~g---~~~~~~l~~l~~~~~vl~l 757 (1151)
T 2eyq_A 703 AE------------------GKIDI-LIGTHKLLQSDVK---FKDLGLLIVDEEHRFG---VRHKERIKAMRANVDILTL 757 (1151)
T ss_dssp HT------------------TCCSE-EEECTHHHHSCCC---CSSEEEEEEESGGGSC---HHHHHHHHHHHTTSEEEEE
T ss_pred hc------------------CCCCE-EEECHHHHhCCcc---ccccceEEEechHhcC---hHHHHHHHHhcCCCCEEEE
Confidence 11 56777 9999998865432 3478999999999974 33445555553 4578999
Q ss_pred eccCCCCCc
Q psy1090 155 TGWYYPNKW 163 (169)
Q Consensus 155 T~TP~~n~~ 163 (169)
||||.++..
T Consensus 758 SATp~p~~l 766 (1151)
T 2eyq_A 758 TATPIPRTL 766 (1151)
T ss_dssp ESSCCCHHH
T ss_pred cCCCChhhH
Confidence 999987654
No 37
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.67 E-value=7.7e-16 Score=114.00 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=89.7
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhcC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALSL 78 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 78 (169)
++++..++|+|||+.++..+.. . ..++||++|. .+..||.+++.++.+ +..+..+.|...........
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~---~--~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 103 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE---L--GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---- 103 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH---H--TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH----
T ss_pred CEEEEcCCCCcHHHHHHHHHHh---h--cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc----
Confidence 4788999999999887665543 1 4689999998 677899999998874 45666677654433322211
Q ss_pred CCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcccH--HHHHHhccc-cccEEE
Q psy1090 79 PTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKKSK--LSIKLTALR-ATFKVL 153 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~~~--~~~~~~~l~-~~~~~~ 153 (169)
...++ +++|++.+.+... .+....++++|+||||++.+.... ....+..+. ....++
T Consensus 104 -----------------~~~~i-~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (337)
T 2z0m_A 104 -----------------RNADI-VVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGL 165 (337)
T ss_dssp -----------------TTCSE-EEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEE
T ss_pred -----------------CCCCE-EEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEE
Confidence 33566 9999999876432 223457899999999987654321 122233343 344567
Q ss_pred EeccCCCC
Q psy1090 154 LTGWYYPN 161 (169)
Q Consensus 154 lT~TP~~n 161 (169)
+||||..+
T Consensus 166 ~SAT~~~~ 173 (337)
T 2z0m_A 166 FSATIPEE 173 (337)
T ss_dssp EESCCCHH
T ss_pred EeCcCCHH
Confidence 89999654
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.66 E-value=3.2e-16 Score=127.59 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=93.0
Q ss_pred CCccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHH--HHHHhh
Q psy1090 1 MDTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERK--ALQSEA 75 (169)
Q Consensus 1 ~g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~--~~~~~~ 75 (169)
|++++..++|+|||..++..+......+ ..++|++|. .+..||.+++.++++ +.++..++|...... ......
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~g--~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l 467 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEAG--FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGL 467 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHHT--SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHH
Confidence 4678999999999998876665544443 689999998 567799999999875 577888887643322 222111
Q ss_pred hcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhc-cccccEEEE
Q psy1090 76 LSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTA-LRATFKVLL 154 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~-l~~~~~~~l 154 (169)
. .+..++ +++|++.+.+... -.+++++|+||+|++... .+ ..+.. ......++|
T Consensus 468 ~------------------~g~~~I-vVgT~~ll~~~~~---~~~l~lVVIDEaHr~g~~--qr-~~l~~~~~~~~vL~m 522 (780)
T 1gm5_A 468 R------------------NGQIDV-VIGTHALIQEDVH---FKNLGLVIIDEQHRFGVK--QR-EALMNKGKMVDTLVM 522 (780)
T ss_dssp H------------------SSCCCE-EEECTTHHHHCCC---CSCCCEEEEESCCCC--------CCCCSSSSCCCEEEE
T ss_pred h------------------cCCCCE-EEECHHHHhhhhh---ccCCceEEecccchhhHH--HH-HHHHHhCCCCCEEEE
Confidence 1 155777 9999988865332 347799999999997422 11 11111 245779999
Q ss_pred eccCCCCCc
Q psy1090 155 TGWYYPNKW 163 (169)
Q Consensus 155 T~TP~~n~~ 163 (169)
||||.++..
T Consensus 523 SATp~p~tl 531 (780)
T 1gm5_A 523 SATPIPRSM 531 (780)
T ss_dssp ESSCCCHHH
T ss_pred eCCCCHHHH
Confidence 999987544
No 39
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.66 E-value=7.6e-16 Score=108.69 Aligned_cols=138 Identities=13% Similarity=0.168 Sum_probs=87.4
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-------CCCCceEEEecC-cchHHHHHHHHHhC-CCceEEEEeCCHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-------QALEPNLIVCPL-SVLNNWEAEFRKFA-PFVRTVKYYGNAIERKALQ 72 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-------~~~~~~Liv~P~-~~l~qW~~e~~~~~-~~~~~~~~~g~~~~~~~~~ 72 (169)
++++..++|+|||+.++..+...... ....++||++|. .+..||.+++.++. ++..+....|.........
T Consensus 59 ~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE 138 (228)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH
Confidence 46788999999998866544332221 234579999998 67789999999985 4667777666544332222
Q ss_pred HhhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc--cHHHHHHhccc-
Q psy1090 73 SEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK--SKLSIKLTALR- 147 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l~- 147 (169)
... ...++ +++|++.+..... .+.-..++++|+||||++...+ ......+..++
T Consensus 139 ~~~--------------------~~~~i-iv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~ 197 (228)
T 3iuy_A 139 DIS--------------------KGVDI-IIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP 197 (228)
T ss_dssp HHH--------------------SCCSE-EEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS
T ss_pred Hhc--------------------CCCCE-EEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc
Confidence 111 44677 9999998865332 2223457899999999875432 22233344443
Q ss_pred cccEEEEeccCCC
Q psy1090 148 ATFKVLLTGWYYP 160 (169)
Q Consensus 148 ~~~~~~lT~TP~~ 160 (169)
....+++|||+..
T Consensus 198 ~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 198 DRQTVMTSATWPD 210 (228)
T ss_dssp SCEEEEEESCCCH
T ss_pred CCeEEEEEeeCCH
Confidence 4567999999754
No 40
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=110.39 Aligned_cols=138 Identities=13% Similarity=0.128 Sum_probs=89.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-----CCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-----QALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQS 73 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-----~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~ 73 (169)
+.++..++|+|||..++..+...... ....++||++|. .+..||.+++.++.. ...+....|..........
T Consensus 93 ~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 172 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 172 (262)
T ss_dssp CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH
T ss_pred cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH
Confidence 46889999999998865544433322 124579999998 777899999999874 3455666665443332222
Q ss_pred hhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc---cccccccEEEEeCCcccCCcc--cHHHHHHhccc-
Q psy1090 74 EALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF---LKKITWNCIIVDEGHSVKNKK--SKLSIKLTALR- 147 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~---~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l~- 147 (169)
.. ...++ +++|++.+...... +.-..++++|+||||++...+ ......+..++
T Consensus 173 ~~--------------------~~~~I-iv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~ 231 (262)
T 3ly5_A 173 LG--------------------NGINI-IVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 231 (262)
T ss_dssp HH--------------------HCCSE-EEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS
T ss_pred hc--------------------CCCCE-EEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC
Confidence 11 33566 99999888654322 223457899999999865432 22233334443
Q ss_pred cccEEEEeccCCC
Q psy1090 148 ATFKVLLTGWYYP 160 (169)
Q Consensus 148 ~~~~~~lT~TP~~ 160 (169)
....+++|||+..
T Consensus 232 ~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 232 RRQTMLFSATQTR 244 (262)
T ss_dssp SSEEEEECSSCCH
T ss_pred CCeEEEEEecCCH
Confidence 4568999999864
No 41
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.62 E-value=3.8e-15 Score=114.57 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=91.2
Q ss_pred CccccCCCCCcHHHHHHHHHH-HHHHhC-----CCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC-KIIEEQ-----ALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQ 72 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~-~~~~~~-----~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~ 72 (169)
+.++..++|+|||+..+..+. .+.... ...++||++|. .+..||.+++.++.. ..++...+|.........
T Consensus 95 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 174 (434)
T 2db3_A 95 DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE 174 (434)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH
Confidence 467889999999987665444 333322 13479999998 678899999999873 456666666544333222
Q ss_pred HhhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc--cHHHHHHhcc--
Q psy1090 73 SEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK--SKLSIKLTAL-- 146 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l-- 146 (169)
... ...++ +++|++.+.+... .+.-..++++|+||||++...+ ....+.+..+
T Consensus 175 ~l~--------------------~~~~I-vv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~ 233 (434)
T 2db3_A 175 CIT--------------------RGCHV-VIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM 233 (434)
T ss_dssp HHT--------------------TCCSE-EEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS
T ss_pred Hhh--------------------cCCCE-EEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC
Confidence 211 45677 9999999876433 2223467899999999986543 2223333332
Q ss_pred -ccccEEEEeccCCC
Q psy1090 147 -RATFKVLLTGWYYP 160 (169)
Q Consensus 147 -~~~~~~~lT~TP~~ 160 (169)
.....+++|||+..
T Consensus 234 ~~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 234 RPEHQTLMFSATFPE 248 (434)
T ss_dssp CSSCEEEEEESCCCH
T ss_pred CCCceEEEEeccCCH
Confidence 34668999999853
No 42
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.62 E-value=4.1e-15 Score=105.95 Aligned_cols=138 Identities=10% Similarity=0.077 Sum_probs=89.7
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh------CCCCceEEEecC-cchHHHHHHHHHhC--CCceEEEEeCCHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE------QALEPNLIVCPL-SVLNNWEAEFRKFA--PFVRTVKYYGNAIERKALQ 72 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~------~~~~~~Liv~P~-~~l~qW~~e~~~~~--~~~~~~~~~g~~~~~~~~~ 72 (169)
+.++..++|+|||+..+..+...... .....+||++|. .+..||.+++.++. .+..+...+|.........
T Consensus 68 ~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 147 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 147 (242)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH
Confidence 46788899999998866554443332 224579999998 67789999988875 3567777776544333222
Q ss_pred HhhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc--cHHHHHHhcc-c
Q psy1090 73 SEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK--SKLSIKLTAL-R 147 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l-~ 147 (169)
... ...++ +++|++.+..... .+.-..++++|+||||++...+ ......+..+ +
T Consensus 148 ~~~--------------------~~~~I-~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~ 206 (242)
T 3fe2_A 148 DLE--------------------RGVEI-CIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 206 (242)
T ss_dssp HHH--------------------HCCSE-EEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS
T ss_pred Hhc--------------------CCCCE-EEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc
Confidence 221 34566 9999988865432 1223467899999999875432 2223334445 3
Q ss_pred cccEEEEeccCCC
Q psy1090 148 ATFKVLLTGWYYP 160 (169)
Q Consensus 148 ~~~~~~lT~TP~~ 160 (169)
....+++|||+..
T Consensus 207 ~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 207 DRQTLMWSATWPK 219 (242)
T ss_dssp SCEEEEEESCCCH
T ss_pred cceEEEEEeecCH
Confidence 4568999999743
No 43
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=106.50 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=85.5
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh--CCCCceEEEecC-cchHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE--QALEPNLIVCPL-SVLNNWEAEFRKFAPF--VRTVKYYGNAIERKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~--~~~~~~Liv~P~-~~l~qW~~e~~~~~~~--~~~~~~~g~~~~~~~~~~~~~ 76 (169)
++++..++|+|||+.++..+...... ....++||++|. .+..||.+++.++... ..+....|...... ..
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 142 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK-----KF 142 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT-----TT
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH-----Hh
Confidence 46788999999998865554443332 223479999998 6778999999998753 34444443322111 00
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc----cccccccEEEEeCCcccCCcc-----cHHHHHHhcc-
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF----LKKITWNCIIVDEGHSVKNKK-----SKLSIKLTAL- 146 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~----~~~~~~~~vi~DEah~~k~~~-----~~~~~~~~~l- 146 (169)
.. ......++ +++|++.+...... +.-..++++|+||||++.... ......+..+
T Consensus 143 ~~--------------~~~~~~~I-~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~ 207 (245)
T 3dkp_A 143 GP--------------KSSKKFDI-LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT 207 (245)
T ss_dssp ST--------------TSCCCCCE-EEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC
T ss_pred hh--------------hhcCCCCE-EEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC
Confidence 00 01155677 99999988654322 233467899999999875421 1122222232
Q ss_pred -ccccEEEEeccCC
Q psy1090 147 -RATFKVLLTGWYY 159 (169)
Q Consensus 147 -~~~~~~~lT~TP~ 159 (169)
.....++||||+.
T Consensus 208 ~~~~~~~~~SAT~~ 221 (245)
T 3dkp_A 208 SHKVRRAMFSATFA 221 (245)
T ss_dssp CTTCEEEEEESSCC
T ss_pred CCCcEEEEEeccCC
Confidence 3456899999984
No 44
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.61 E-value=7.4e-15 Score=111.85 Aligned_cols=138 Identities=16% Similarity=0.189 Sum_probs=90.0
Q ss_pred CccccCCCCCcHHHHHHHHH-HHHHHhCC------------------CCceEEEecC-cchHHHHHHHHHhC--CCceEE
Q psy1090 2 DTVIPDPTRYRKSGKVIAFF-CKIIEEQA------------------LEPNLIVCPL-SVLNNWEAEFRKFA--PFVRTV 59 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i-~~~~~~~~------------------~~~~Liv~P~-~~l~qW~~e~~~~~--~~~~~~ 59 (169)
++++..++|+|||+..+..+ ..+...+. ...+||++|. .+..||.+++.++. .+.++.
T Consensus 54 ~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 133 (417)
T 2i4i_A 54 DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 133 (417)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEE
Confidence 46789999999998765443 33333221 1469999998 77889999999886 356777
Q ss_pred EEeCCHHHHHHHHHhhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhc--cccccccEEEEeCCcccCCcc-
Q psy1090 60 KYYGNAIERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--LKKITWNCIIVDEGHSVKNKK- 136 (169)
Q Consensus 60 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~~~~~~~~vi~DEah~~k~~~- 136 (169)
.++|............ ...++ +++|++.+.+.... +.-..++++|+||||++...+
T Consensus 134 ~~~g~~~~~~~~~~~~--------------------~~~~I-~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~ 192 (417)
T 2i4i_A 134 VVYGGADIGQQIRDLE--------------------RGCHL-LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGF 192 (417)
T ss_dssp EECSSSCHHHHHHHHT--------------------TCCSE-EEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTC
T ss_pred EEECCCCHHHHHHHhh--------------------CCCCE-EEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCc
Confidence 7777654433332221 44567 99999998764332 233467899999999875433
Q ss_pred cHHHHHH-hc--cc---cccEEEEeccCCC
Q psy1090 137 SKLSIKL-TA--LR---ATFKVLLTGWYYP 160 (169)
Q Consensus 137 ~~~~~~~-~~--l~---~~~~~~lT~TP~~ 160 (169)
......+ .. +. ....+++||||..
T Consensus 193 ~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~ 222 (417)
T 2i4i_A 193 EPQIRRIVEQDTMPPKGVRHTMMFSATFPK 222 (417)
T ss_dssp HHHHHHHHTSSSCCCBTTBEEEEEESCCCH
T ss_pred HHHHHHHHHhccCCCcCCcEEEEEEEeCCH
Confidence 1122222 22 21 3568999999954
No 45
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.60 E-value=8e-16 Score=116.11 Aligned_cols=134 Identities=10% Similarity=0.152 Sum_probs=87.4
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
++++..++|+|||++++..+...... +...++||++|. .+..||.+++.++.. ........+......
T Consensus 46 ~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 117 (395)
T 3pey_A 46 NMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-------- 117 (395)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------
Confidence 46889999999999877665543332 345689999998 577899999998863 344444443321100
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcccH--HHH-HHhcc-ccccE
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKKSK--LSI-KLTAL-RATFK 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~~~--~~~-~~~~l-~~~~~ 151 (169)
.....++ +++|++.+..... .+.-.+++++|+||||++.+.... ... ....+ +....
T Consensus 118 ----------------~~~~~~i-iv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (395)
T 3pey_A 118 ----------------KQINAQV-IVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQL 180 (395)
T ss_dssp ----------------SCBCCSE-EEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEE
T ss_pred ----------------ccCCCCE-EEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEE
Confidence 0135677 9999999865432 223346899999999987642221 122 22233 34568
Q ss_pred EEEeccCCC
Q psy1090 152 VLLTGWYYP 160 (169)
Q Consensus 152 ~~lT~TP~~ 160 (169)
+++||||..
T Consensus 181 i~~SAT~~~ 189 (395)
T 3pey_A 181 VLFSATFAD 189 (395)
T ss_dssp EEEESCCCH
T ss_pred EEEEecCCH
Confidence 999999964
No 46
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.59 E-value=3e-15 Score=113.68 Aligned_cols=135 Identities=10% Similarity=0.127 Sum_probs=87.0
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecC-cchHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPL-SVLNNWEAEFRKFA---PFVRTVKYYGNAIERKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~-~~l~qW~~e~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 76 (169)
+.++..++|+|||+.++..+...... ....++||++|. .+..||.+.+.++. ++..+....+......
T Consensus 66 ~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 138 (412)
T 3fht_A 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------- 138 (412)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------
T ss_pred eEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------
Confidence 36888999999998876554433332 334489999998 57789988888775 4556665554322110
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchh---ccccccccEEEEeCCcccCCc--ccHHH-HHHhcc-ccc
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG---FLKKITWNCIIVDEGHSVKNK--KSKLS-IKLTAL-RAT 149 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~---~~~~~~~~~vi~DEah~~k~~--~~~~~-~~~~~l-~~~ 149 (169)
......++ +++|++.+..... .+.-..++++|+||||++... ..... .....+ ...
T Consensus 139 ----------------~~~~~~~i-vv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 201 (412)
T 3fht_A 139 ----------------GQKISEQI-VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 201 (412)
T ss_dssp ----------------TCCCCCSE-EEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTC
T ss_pred ----------------hhcCCCCE-EEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCc
Confidence 00134567 9999999876442 233357899999999987431 12222 223333 345
Q ss_pred cEEEEeccCCC
Q psy1090 150 FKVLLTGWYYP 160 (169)
Q Consensus 150 ~~~~lT~TP~~ 160 (169)
..+++||||..
T Consensus 202 ~~i~~SAT~~~ 212 (412)
T 3fht_A 202 QMLLFSATFED 212 (412)
T ss_dssp EEEEEESCCCH
T ss_pred eEEEEEeecCH
Confidence 68999999864
No 47
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.59 E-value=3.5e-15 Score=116.82 Aligned_cols=136 Identities=10% Similarity=0.125 Sum_probs=84.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLP 79 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (169)
+.++..++|+|||.+++..+...... ....++||++|. .+..||.+++.++.....+....+.........
T Consensus 160 ~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 232 (508)
T 3fho_A 160 NMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA------- 232 (508)
T ss_dssp CEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-----------------
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc-------
Confidence 36889999999999876655544333 334589999998 578899999999875443332222211110000
Q ss_pred CcccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc--cHHHH-HHhccc-cccEEE
Q psy1090 80 TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK--SKLSI-KLTALR-ATFKVL 153 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~--~~~~~-~~~~l~-~~~~~~ 153 (169)
....++ +++|++.+..... .+....++++|+||||++.... ..... ....++ ....++
T Consensus 233 ---------------~~~~~I-vv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~ 296 (508)
T 3fho_A 233 ---------------KIDAQI-VIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVL 296 (508)
T ss_dssp ---------------CCCCSE-EEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEE
T ss_pred ---------------cCCCCE-EEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEE
Confidence 034567 9999998765332 2233468999999999876422 12222 233343 455799
Q ss_pred EeccCCC
Q psy1090 154 LTGWYYP 160 (169)
Q Consensus 154 lT~TP~~ 160 (169)
|||||-.
T Consensus 297 lSAT~~~ 303 (508)
T 3fho_A 297 FSATFSE 303 (508)
T ss_dssp EESCCST
T ss_pred EeCCCCH
Confidence 9999963
No 48
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=5.4e-14 Score=111.69 Aligned_cols=138 Identities=15% Similarity=0.095 Sum_probs=88.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCC-----CCceEEEecC-cchHHHHHHHHHhC------CCceEEEEeCCHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQA-----LEPNLIVCPL-SVLNNWEAEFRKFA------PFVRTVKYYGNAIERKA 70 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~-----~~~~Liv~P~-~~l~qW~~e~~~~~------~~~~~~~~~g~~~~~~~ 70 (169)
.++..++|+|||+..+..+........ ..++|||+|. .+..||.+++.++. +...+....|.......
T Consensus 63 vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 142 (579)
T 3sqw_A 63 VIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA 142 (579)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH
T ss_pred EEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHH
Confidence 577899999999886655443333321 2379999998 67789999998864 34556666665444333
Q ss_pred HHHhhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhcc---ccccccEEEEeCCcccCCccc--HHHHHHhc
Q psy1090 71 LQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFL---KKITWNCIIVDEGHSVKNKKS--KLSIKLTA 145 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~---~~~~~~~vi~DEah~~k~~~~--~~~~~~~~ 145 (169)
...... ...++ +++|++.+....... .-..++++|+||||++....- .....+..
T Consensus 143 ~~~l~~-------------------~~~~I-lV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~ 202 (579)
T 3sqw_A 143 MNKMNK-------------------LRPNI-VIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 202 (579)
T ss_dssp HHHHHH-------------------HCCSE-EEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred HHHHhc-------------------CCCCE-EEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHH
Confidence 332211 34567 999999986543321 223578999999999865431 11112222
Q ss_pred c---c-----cccEEEEeccCCC
Q psy1090 146 L---R-----ATFKVLLTGWYYP 160 (169)
Q Consensus 146 l---~-----~~~~~~lT~TP~~ 160 (169)
+ . ....+++|||+..
T Consensus 203 l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 203 LNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp HHHHCSSCTTCCEEEEEESSCCT
T ss_pred hhhhhcccccCceEEEEeccCCh
Confidence 2 1 3468999999874
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.1e-14 Score=117.69 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=87.1
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
+.+++.++|+|||+.+...+...... ..++|+++|. .+..||.+++.++++ .+..++|.....
T Consensus 103 ~vLV~apTGSGKTlva~lai~~~l~~--g~rvL~l~PtkaLa~Q~~~~l~~~~~--~vglltGd~~~~------------ 166 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDITIN------------ 166 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHHS--CEEEECSSCEEC------------
T ss_pred CEEEECCCCCChHHHHHHHHHHHhcc--CCeEEEECChHHHHHHHHHHHHHHhC--CEEEEeCCCccC------------
Confidence 46889999999999875544443333 3689999997 778899999998875 556666643211
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhchh--ccccccccEEEEeCCcccCCcc--cHHHHHHhcc-ccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG--FLKKITWNCIIVDEGHSVKNKK--SKLSIKLTAL-RATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~--~~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l-~~~~~~~lT 155 (169)
...++ +++|++.+.+... ...-.+++++|+||+|++.+.. ......+..+ .....++||
T Consensus 167 ---------------~~~~I-vV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LS 230 (1010)
T 2xgj_A 167 ---------------PDAGC-LVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLS 230 (1010)
T ss_dssp ---------------TTCSE-EEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred ---------------CCCCE-EEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEc
Confidence 33566 9999998865322 1222378899999999997642 2223334444 356789999
Q ss_pred ccCC
Q psy1090 156 GWYY 159 (169)
Q Consensus 156 ~TP~ 159 (169)
||+.
T Consensus 231 ATi~ 234 (1010)
T 2xgj_A 231 ATIP 234 (1010)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9964
No 50
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.52 E-value=7e-14 Score=110.53 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=87.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCC-----CCceEEEecC-cchHHHHHHHHHhC------CCceEEEEeCCHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQA-----LEPNLIVCPL-SVLNNWEAEFRKFA------PFVRTVKYYGNAIERKA 70 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~-----~~~~Liv~P~-~~l~qW~~e~~~~~------~~~~~~~~~g~~~~~~~ 70 (169)
.++..++|+|||+.++..+........ ..++||++|. .+..||.+++.++. +...+....|.......
T Consensus 114 ~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 193 (563)
T 3i5x_A 114 VIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA 193 (563)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH
T ss_pred EEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH
Confidence 577899999999886655444333322 2379999997 77789999998863 33456666665444333
Q ss_pred HHHhhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhcc---ccccccEEEEeCCcccCCccc-HHHH-HHhc
Q psy1090 71 LQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFL---KKITWNCIIVDEGHSVKNKKS-KLSI-KLTA 145 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~---~~~~~~~vi~DEah~~k~~~~-~~~~-~~~~ 145 (169)
...... ...++ +++|++.+....... .-..++++|+||||++....- .... .+..
T Consensus 194 ~~~~~~-------------------~~~~I-iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~ 253 (563)
T 3i5x_A 194 MNKMNK-------------------LRPNI-VIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 253 (563)
T ss_dssp HHHHHH-------------------HCCSE-EEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred HHHHhc-------------------CCCCE-EEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHh
Confidence 332211 45567 999999886543321 123578999999998765431 1111 1122
Q ss_pred c--------ccccEEEEeccCCC
Q psy1090 146 L--------RATFKVLLTGWYYP 160 (169)
Q Consensus 146 l--------~~~~~~~lT~TP~~ 160 (169)
+ .....+++||||..
T Consensus 254 l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 254 LNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp HHHHCSSCTTCCEEEEEESSCCT
T ss_pred hhhccccCccCceEEEEEccCCH
Confidence 2 13458999999974
No 51
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.52 E-value=2.7e-14 Score=112.16 Aligned_cols=139 Identities=16% Similarity=0.069 Sum_probs=90.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHH--HHHHHHhhhcC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIE--RKALQSEALSL 78 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~ 78 (169)
++++..++|+|||+.++..+. . . .+.+|||+|. .++.||.+++.++ +.....+++.... .........
T Consensus 42 d~lv~apTGsGKTl~~~lp~l--~-~--~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~~~-- 112 (523)
T 1oyw_A 42 DCLVVMPTGGGKSLCYQIPAL--L-L--NGLTVVVSPLISLMKDQVDQLQAN--GVAAACLNSTQTREQQLEVMTGCR-- 112 (523)
T ss_dssp CEEEECSCHHHHHHHHHHHHH--H-S--SSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHH--
T ss_pred CEEEECCCCcHHHHHHHHHHH--H-h--CCCEEEECChHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHh--
Confidence 467889999999976543322 1 1 3689999998 7788999999987 4566666664332 221111111
Q ss_pred CCcccccccCCccccccCCCCeEEEecHHHHHhc--hhccccccccEEEEeCCcccCCcccH---HHHHHh----ccccc
Q psy1090 79 PTIKVPAKKGKTKKQISLKLPLILVTTPQIIEND--FGFLKKITWNCIIVDEGHSVKNKKSK---LSIKLT----ALRAT 149 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~--~~~~~~~~~~~vi~DEah~~k~~~~~---~~~~~~----~l~~~ 149 (169)
.+..++ +++|++.+... .+.+...+++++|+||||++...+.. .+..+. .+...
T Consensus 113 ----------------~~~~~i-lv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~ 175 (523)
T 1oyw_A 113 ----------------TGQIRL-LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175 (523)
T ss_dssp ----------------HTCCSE-EEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTS
T ss_pred ----------------cCCCCE-EEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCC
Confidence 155677 99999998543 23344568899999999998654321 122232 33456
Q ss_pred cEEEEeccCCCCCchhh
Q psy1090 150 FKVLLTGWYYPNKWSKQ 166 (169)
Q Consensus 150 ~~~~lT~TP~~n~~~el 166 (169)
..++|||||..+...|+
T Consensus 176 ~~i~lSAT~~~~~~~~i 192 (523)
T 1oyw_A 176 PFMALTATADDTTRQDI 192 (523)
T ss_dssp CEEEEESCCCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHH
Confidence 78999999987655444
No 52
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.51 E-value=1.7e-13 Score=115.39 Aligned_cols=141 Identities=14% Similarity=0.164 Sum_probs=95.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhC-CCceEEEEeCCHHH---HHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFA-PFVRTVKYYGNAIE---RKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~-~~~~~~~~~g~~~~---~~~~~~~~~ 76 (169)
+.++..++|+|||...+..+.... .....+||++|. .+..|+.+++.++. .+.++..++|.... .........
T Consensus 95 dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~ 172 (1104)
T 4ddu_A 95 SFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE 172 (1104)
T ss_dssp CEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC
Confidence 467888999999995554444433 344689999998 67789999999976 35688888875433 222222111
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcc-------------cH-HHHH
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKK-------------SK-LSIK 142 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~-------------~~-~~~~ 142 (169)
+..++ +++|++.+.+....+....++++|+||||++.... .. ....
T Consensus 173 -------------------g~~~I-lV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 173 -------------------DDYHI-LVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp -------------------SCCSE-EEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred -------------------CCCCE-EEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 44677 99999999776665555689999999999865321 11 1222
Q ss_pred Hhcc------------ccccEEEEeccCCCCCch
Q psy1090 143 LTAL------------RATFKVLLTGWYYPNKWS 164 (169)
Q Consensus 143 ~~~l------------~~~~~~~lT~TP~~n~~~ 164 (169)
+..+ .....+++||||....+.
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~ 266 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 266 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSST
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHH
Confidence 2222 345689999998776654
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.50 E-value=1.4e-13 Score=115.01 Aligned_cols=128 Identities=14% Similarity=0.051 Sum_probs=89.3
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
+.++..++|+|||+.+...+..... ...++||++|. .+..||.+++.+++++..+..++|....
T Consensus 56 ~vlv~apTGsGKTlv~~~~i~~~~~--~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~------------- 120 (997)
T 4a4z_A 56 SVFVAAHTSAGKTVVAEYAIAMAHR--NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI------------- 120 (997)
T ss_dssp EEEEECCTTSCSHHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-------------
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-------------
Confidence 3678999999999875544444332 23679999997 6778999999998877888888875421
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhchhc--cccccccEEEEeCCcccCCc--ccHHHHHHhccc-cccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--LKKITWNCIIVDEGHSVKNK--KSKLSIKLTALR-ATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~~~~~~~~vi~DEah~~k~~--~~~~~~~~~~l~-~~~~~~lT 155 (169)
....++ +++|++.+.+.... ..-.+++++|+||||++.+. .......+..++ ....++||
T Consensus 121 --------------~~~~~I-lV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLS 185 (997)
T 4a4z_A 121 --------------NPDANC-LIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLS 185 (997)
T ss_dssp --------------CTTSSE-EEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEE
T ss_pred --------------CCCCCE-EEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEc
Confidence 144566 99999988654321 12246899999999998653 233444555554 46789999
Q ss_pred ccCC
Q psy1090 156 GWYY 159 (169)
Q Consensus 156 ~TP~ 159 (169)
|||.
T Consensus 186 AT~~ 189 (997)
T 4a4z_A 186 ATVP 189 (997)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9985
No 54
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.49 E-value=9.2e-14 Score=110.53 Aligned_cols=137 Identities=19% Similarity=0.165 Sum_probs=87.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHH--HHHHHhhhcC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIER--KALQSEALSL 78 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~ 78 (169)
++++..++|+|||+..+..+.. ..+.+|||+|. .++.||.+.+.++ +..+..++|..... .........
T Consensus 61 d~lv~~pTGsGKTl~~~lpal~-----~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~- 132 (591)
T 2v1x_A 61 EVFLVMPTGGGKSLCYQLPALC-----SDGFTLVICPLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVN- 132 (591)
T ss_dssp CEEEECCTTSCTTHHHHHHHHT-----SSSEEEEECSCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHC-
T ss_pred CEEEEECCCChHHHHHHHHHHH-----cCCcEEEEeCHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhc-
Confidence 3678899999999765433321 24689999997 7888999999988 56666666653322 211111100
Q ss_pred CCcccccccCCccccccCCCCeEEEecHHHHHhc---hhcc----ccccccEEEEeCCcccCCccc-------HHHHHHh
Q psy1090 79 PTIKVPAKKGKTKKQISLKLPLILVTTPQIIEND---FGFL----KKITWNCIIVDEGHSVKNKKS-------KLSIKLT 144 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~---~~~~----~~~~~~~vi~DEah~~k~~~~-------~~~~~~~ 144 (169)
.....++ +++|++.+... .+.+ ....++++|+||||++...+. .......
T Consensus 133 ---------------~~~~~~I-lv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~ 196 (591)
T 2v1x_A 133 ---------------KNSELKL-IYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKR 196 (591)
T ss_dssp ---------------TTCCCCE-EEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHH
T ss_pred ---------------ccCCCCE-EEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHH
Confidence 0156677 99999987532 1211 233789999999999765321 1112223
Q ss_pred ccccccEEEEeccCCCCC
Q psy1090 145 ALRATFKVLLTGWYYPNK 162 (169)
Q Consensus 145 ~l~~~~~~~lT~TP~~n~ 162 (169)
.++....++|||||....
T Consensus 197 ~~~~~~ii~lSAT~~~~v 214 (591)
T 2v1x_A 197 QFPNASLIGLTATATNHV 214 (591)
T ss_dssp HCTTSEEEEEESSCCHHH
T ss_pred hCCCCcEEEEecCCCHHH
Confidence 345667899999997653
No 55
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.48 E-value=6.8e-14 Score=113.69 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=87.4
Q ss_pred CccccCCCCCcHHHHHHHH-HHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhcC
Q psy1090 2 DTVIPDPTRYRKSGKVIAF-FCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP-FVRTVKYYGNAIERKALQSEALSL 78 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~-i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~ 78 (169)
+.+++.++|+|||.++... +..+... .+++++++|. .+..||.+++.++.+ +.++...+|.......
T Consensus 41 ~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-------- 110 (720)
T 2zj8_A 41 NALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE-------- 110 (720)
T ss_dssp EEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG--------
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc--------
Confidence 3678999999999987444 4343323 3689999997 777899999977653 5677777774321110
Q ss_pred CCcccccccCCccccccCCCCeEEEecHHHHHhchhccc--cccccEEEEeCCcccCCcc-cH-HHHHHhccc-cccEEE
Q psy1090 79 PTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLK--KITWNCIIVDEGHSVKNKK-SK-LSIKLTALR-ATFKVL 153 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~--~~~~~~vi~DEah~~k~~~-~~-~~~~~~~l~-~~~~~~ 153 (169)
.....++ +++|++.+......-. -.+++++|+||+|.+.... .. ....+..++ ....++
T Consensus 111 ---------------~~~~~~I-iv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~ 174 (720)
T 2zj8_A 111 ---------------WLGKYDI-IIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIG 174 (720)
T ss_dssp ---------------GGGGCSE-EEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEE
T ss_pred ---------------ccCCCCE-EEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEE
Confidence 0145667 9999988865332211 2367899999999886421 22 222333343 577899
Q ss_pred EeccCC
Q psy1090 154 LTGWYY 159 (169)
Q Consensus 154 lT~TP~ 159 (169)
||||+-
T Consensus 175 lSATl~ 180 (720)
T 2zj8_A 175 LSATIG 180 (720)
T ss_dssp EECCCS
T ss_pred EcCCcC
Confidence 999985
No 56
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.48 E-value=3.5e-14 Score=110.32 Aligned_cols=134 Identities=11% Similarity=0.164 Sum_probs=83.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHh-CCCCceEEEecC-cchHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhc
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEE-QALEPNLIVCPL-SVLNNWEAEFRKFA---PFVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~-~~~~~~Liv~P~-~~l~qW~~e~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
.++..++|+|||...+..+...... +...++||++|. .+..||.+.+.++. +...+....+......
T Consensus 134 ~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 205 (479)
T 3fmp_B 134 LIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------- 205 (479)
T ss_dssp EEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT--------
T ss_pred EEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc--------
Confidence 5788999999998865444332222 333479999998 66778877776654 4566655554322100
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchh---ccccccccEEEEeCCcccCCccc--HHHHHH-hcc-cccc
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG---FLKKITWNCIIVDEGHSVKNKKS--KLSIKL-TAL-RATF 150 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~---~~~~~~~~~vi~DEah~~k~~~~--~~~~~~-~~l-~~~~ 150 (169)
......++ +++|++.+..... .+.-..++++|+||+|++..... .....+ ..+ ....
T Consensus 206 ---------------~~~~~~~I-vv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~ 269 (479)
T 3fmp_B 206 ---------------GQKISEQI-VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269 (479)
T ss_dssp ---------------TCCCCCSE-EEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSE
T ss_pred ---------------cccCCCCE-EEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccce
Confidence 00133466 9999999866442 23334789999999998753211 122222 333 3456
Q ss_pred EEEEeccCCC
Q psy1090 151 KVLLTGWYYP 160 (169)
Q Consensus 151 ~~~lT~TP~~ 160 (169)
.+++||||..
T Consensus 270 ~i~~SAT~~~ 279 (479)
T 3fmp_B 270 MLLFSATFED 279 (479)
T ss_dssp EEEEESCCCH
T ss_pred EEEEeCCCCH
Confidence 8999999964
No 57
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.48 E-value=4.9e-14 Score=103.48 Aligned_cols=135 Identities=8% Similarity=0.105 Sum_probs=84.8
Q ss_pred CccccCCCCCcHHHHHHHH-HHHHHHhCCCCceEEEecC-cchHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhh
Q psy1090 2 DTVIPDPTRYRKSGKVIAF-FCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFA---PFVRTVKYYGNAIERKALQSEAL 76 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~-i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 76 (169)
+.++..++|+|||...+.. +..+...+....+||++|. .+..|+.+.+.++. ++..+....|......
T Consensus 133 ~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~------- 205 (300)
T 3fmo_B 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------- 205 (300)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-------
T ss_pred eEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-------
Confidence 3577889999999875533 3333222333479999998 67789888888775 4566666655432110
Q ss_pred cCCCcccccccCCccccccCCCCeEEEecHHHHHhchh---ccccccccEEEEeCCcccCCcc---cHHHHHHhccc-cc
Q psy1090 77 SLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG---FLKKITWNCIIVDEGHSVKNKK---SKLSIKLTALR-AT 149 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~---~~~~~~~~~vi~DEah~~k~~~---~~~~~~~~~l~-~~ 149 (169)
......++ +++|++.+..... .+.-...+++|+||||++-... ......+..++ ..
T Consensus 206 ----------------~~~~~~~I-lV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~ 268 (300)
T 3fmo_B 206 ----------------GQKISEQI-VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 268 (300)
T ss_dssp ----------------TCCCCCSE-EEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTC
T ss_pred ----------------hhcCCCCE-EEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCC
Confidence 00144567 9999999865442 2223467899999999875311 11222233343 45
Q ss_pred cEEEEeccCCC
Q psy1090 150 FKVLLTGWYYP 160 (169)
Q Consensus 150 ~~~~lT~TP~~ 160 (169)
..+++|||+-.
T Consensus 269 q~i~~SAT~~~ 279 (300)
T 3fmo_B 269 QMLLFSATFED 279 (300)
T ss_dssp EEEEEESCCCH
T ss_pred EEEEEeccCCH
Confidence 68899999864
No 58
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.46 E-value=9.2e-14 Score=112.63 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=87.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhcCC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP-FVRTVKYYGNAIERKALQSEALSLP 79 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (169)
+.+++.++|+|||.++...+...... .+++++++|. .+..||.++++++.+ +.++...+|......
T Consensus 42 ~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~---------- 109 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRD---------- 109 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCS----------
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcch----------
Confidence 46889999999999886555443332 4689999998 577899999976654 567777777432110
Q ss_pred CcccccccCCccccccCCCCeEEEecHHHHHhchhccc--cccccEEEEeCCcccCCcc--cHHHHHHhcc----ccccE
Q psy1090 80 TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLK--KITWNCIIVDEGHSVKNKK--SKLSIKLTAL----RATFK 151 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~--~~~~~~vi~DEah~~k~~~--~~~~~~~~~l----~~~~~ 151 (169)
......++ +++|++.+......-. -.+++++|+||+|.+.... ......+..+ +....
T Consensus 110 -------------~~~~~~~I-iv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~i 175 (702)
T 2p6r_A 110 -------------EHLGDCDI-IVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRV 175 (702)
T ss_dssp -------------SCSTTCSE-EEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEE
T ss_pred -------------hhccCCCE-EEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceE
Confidence 00145677 9999988765332211 2367899999999986522 2222222223 35678
Q ss_pred EEEeccCC
Q psy1090 152 VLLTGWYY 159 (169)
Q Consensus 152 ~~lT~TP~ 159 (169)
++||||+-
T Consensus 176 i~lSATl~ 183 (702)
T 2p6r_A 176 IGLSATAP 183 (702)
T ss_dssp EEEECCCT
T ss_pred EEECCCcC
Confidence 99999985
No 59
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.45 E-value=1.7e-13 Score=111.31 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=87.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc-chHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhcCC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS-VLNNWEAEFRKFAP-FVRTVKYYGNAIERKALQSEALSLP 79 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (169)
+.+++.++|+|||.++...+...... ..+++++++|.. +..||.++++++.+ +.++...+|.......
T Consensus 48 ~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--------- 117 (715)
T 2va8_A 48 RLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--------- 117 (715)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG---------
T ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh---------
Confidence 46889999999999986555433332 246899999984 77899999976653 5667666664221100
Q ss_pred CcccccccCCccccccCCCCeEEEecHHHHHhchhcc--ccccccEEEEeCCcccCCcc-c-HHHHHHhccccccEEEEe
Q psy1090 80 TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFL--KKITWNCIIVDEGHSVKNKK-S-KLSIKLTALRATFKVLLT 155 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~--~~~~~~~vi~DEah~~k~~~-~-~~~~~~~~l~~~~~~~lT 155 (169)
.....++ +++|++.+......- .-.+++++|+||+|.+.+.. . .....+..++..+.++||
T Consensus 118 --------------~~~~~~I-iv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lS 182 (715)
T 2va8_A 118 --------------WLKNYDI-IITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALS 182 (715)
T ss_dssp --------------GGGGCSE-EEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEE
T ss_pred --------------hcCCCCE-EEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEc
Confidence 0135667 999998876533221 12367899999999976422 1 122233345567899999
Q ss_pred ccCC
Q psy1090 156 GWYY 159 (169)
Q Consensus 156 ~TP~ 159 (169)
|||-
T Consensus 183 ATl~ 186 (715)
T 2va8_A 183 ATIS 186 (715)
T ss_dssp SCCT
T ss_pred CCCC
Confidence 9985
No 60
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.44 E-value=5.2e-13 Score=112.59 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=86.3
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
+.+++.++|+|||+++...+...... .+++||++|. .+..||.+++.+++. .+..++|....
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~~--~VglltGd~~~------------- 263 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDITI------------- 263 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHTS--SEEEECSSCBC-------------
T ss_pred CEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHHHhC--CccEEeCcccc-------------
Confidence 46889999999998876555544433 4689999998 677899999999875 45556664321
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhchhc--cccccccEEEEeCCcccCCcc--cHHHHHHhcc-ccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF--LKKITWNCIIVDEGHSVKNKK--SKLSIKLTAL-RATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~--~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l-~~~~~~~lT 155 (169)
....++ +++|++.+.+.... ..-.++++||+||||++.... ......+..+ .....++||
T Consensus 264 --------------~~~~~I-lV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lS 328 (1108)
T 3l9o_A 264 --------------NPDAGC-LVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLS 328 (1108)
T ss_dssp --------------CCSCSE-EEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred --------------CCCCCE-EEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEc
Confidence 144667 99999887653321 112267899999999986532 2222333444 356789999
Q ss_pred ccCC
Q psy1090 156 GWYY 159 (169)
Q Consensus 156 ~TP~ 159 (169)
||+.
T Consensus 329 ATip 332 (1108)
T 3l9o_A 329 ATIP 332 (1108)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 9943
No 61
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.31 E-value=6.4e-12 Score=105.73 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=89.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCC--c----eEEEEeCCHHHHHHHH-H
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPF--V----RTVKYYGNAIERKALQ-S 73 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~--~----~~~~~~g~~~~~~~~~-~ 73 (169)
+.++..++|+|||..++..+.... ....++||++|. .+..|+.++++++.+. . .+..++|......... .
T Consensus 73 dvlv~apTGSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~ 150 (1054)
T 1gku_B 73 SFAATAPTGVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFM 150 (1054)
T ss_dssp CEECCCCBTSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHH
Confidence 468889999999974444444333 334689999998 6778999999988753 3 5667777543322111 1
Q ss_pred hhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhcc-------
Q psy1090 74 EALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTAL------- 146 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l------- 146 (169)
... ...++ +++|++.+.+....+. .++++|+||||++.+........+..+
T Consensus 151 ~~l-------------------~~~~I-lV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~ 208 (1054)
T 1gku_B 151 QNL-------------------RNFKI-VITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLK 208 (1054)
T ss_dssp HSG-------------------GGCSE-EEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETT
T ss_pred hhc-------------------cCCCE-EEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCcchhhh
Confidence 111 12666 9999999987666544 788999999999776433333333323
Q ss_pred -----ccccEEEEeccCCCC
Q psy1090 147 -----RATFKVLLTGWYYPN 161 (169)
Q Consensus 147 -----~~~~~~~lT~TP~~n 161 (169)
.....+++|||+...
T Consensus 209 ~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 209 TKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp TTEEEECCSSEEEECCCCSC
T ss_pred hhhcccCCceEEEEecCCCc
Confidence 123468889888765
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.31 E-value=6.5e-12 Score=96.52 Aligned_cols=126 Identities=12% Similarity=0.029 Sum_probs=71.5
Q ss_pred ccccCCCCCcHHHHH-HHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 3 TVIPDPTRYRKSGKV-IAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 3 ~iL~de~G~GKT~~~-i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
.++..++|+|||..+ +.++...... ..+++|++|. .+..|+.+.+. +..+....|......
T Consensus 5 ~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~~~----------- 67 (431)
T 2v6i_A 5 TVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQSER----------- 67 (431)
T ss_dssp EEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT----TSCEEEC-------------------
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccccC-----------
Confidence 578899999999987 4444344333 3589999998 45568777665 444444333211100
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhc-hhccccccccEEEEeCCcccCCccc-HHHHHHhcc---ccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIEND-FGFLKKITWNCIIVDEGHSVKNKKS-KLSIKLTAL---RATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~-~~~~~~~~~~~vi~DEah~~k~~~~-~~~~~~~~l---~~~~~~~lT 155 (169)
.....+ .+.+...+.+. .....-.+++++|+||+|++ +... .....+..+ .....++||
T Consensus 68 --------------~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~S 131 (431)
T 2v6i_A 68 --------------TGNEIV-DFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMT 131 (431)
T ss_dssp ---------------CCCSE-EEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred --------------CCCceE-EEEchHHHHHHHhcCccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEe
Confidence 022223 44455554332 12212246799999999997 3222 122222222 357789999
Q ss_pred ccCCCC
Q psy1090 156 GWYYPN 161 (169)
Q Consensus 156 ~TP~~n 161 (169)
|||...
T Consensus 132 AT~~~~ 137 (431)
T 2v6i_A 132 ATPPGT 137 (431)
T ss_dssp SSCTTC
T ss_pred CCCCcc
Confidence 999854
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.19 E-value=1.6e-10 Score=100.97 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=86.4
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHH-hCC--CceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRK-FAP--FVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~-~~~--~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
+.+++-++|+|||+.+.-.+.....++..+++++++|. .+..|-.+++.+ |.+ +.++..++|.........
T Consensus 944 nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~----- 1018 (1724)
T 4f92_B 944 NVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLL----- 1018 (1724)
T ss_dssp CEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHH-----
T ss_pred cEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhc-----
Confidence 46788999999999876555544555556789999997 677776777754 433 567888888765433221
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHHhchhccc----cccccEEEEeCCcccCCcccHHHHHH-hc-------
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLK----KITWNCIIVDEGHSVKNKKSKLSIKL-TA------- 145 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~----~~~~~~vi~DEah~~k~~~~~~~~~~-~~------- 145 (169)
...++ +++|++.+........ -.+.+++|+||+|.+..........+ ..
T Consensus 1019 ------------------~~~~I-iV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~ 1079 (1724)
T 4f92_B 1019 ------------------GKGNI-IISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQ 1079 (1724)
T ss_dssp ------------------HHCSE-EEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHT
T ss_pred ------------------CCCCE-EEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhh
Confidence 33456 9999998743222111 12568999999999875433322221 11
Q ss_pred c-ccccEEEEeccC
Q psy1090 146 L-RATFKVLLTGWY 158 (169)
Q Consensus 146 l-~~~~~~~lT~TP 158 (169)
. +..+.++||||-
T Consensus 1080 ~~~~~riI~lSATl 1093 (1724)
T 4f92_B 1080 IERPIRIVALSSSL 1093 (1724)
T ss_dssp TSSCCEEEEEESCB
T ss_pred cCCCceEEEEeCCC
Confidence 2 234678999995
No 64
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.13 E-value=1.6e-10 Score=89.40 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=70.0
Q ss_pred ccccCCCCCcHHHHH-HHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 3 TVIPDPTRYRKSGKV-IAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 3 ~iL~de~G~GKT~~~-i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
.++..++|+|||.+. +.++..+... ..++||++|. .+..|+.+++. +..+....+.....
T Consensus 24 vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~----g~~v~~~~~~~~~~------------ 85 (459)
T 2z83_A 24 TVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR----GLPVRYQTSAVQRE------------ 85 (459)
T ss_dssp EEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT----TSCEEECC------------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc----CceEeEEecccccC------------
Confidence 577899999999984 4444444332 3689999998 56778888876 22222111110000
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhc-hhccccccccEEEEeCCcccCCcccHHH----HHHhccccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIEND-FGFLKKITWNCIIVDEGHSVKNKKSKLS----IKLTALRATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~-~~~~~~~~~~~vi~DEah~~k~~~~~~~----~~~~~l~~~~~~~lT 155 (169)
......+ .+.+...+.+. .....-.+++++|+||||+.. ...... ...........++||
T Consensus 86 -------------~t~~~~i-~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~S 150 (459)
T 2z83_A 86 -------------HQGNEIV-DVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMT 150 (459)
T ss_dssp ---------------CCCSE-EEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred -------------CCCCcEE-EEEchHHHHHHhhccccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEE
Confidence 0022233 45555554332 222223367999999999852 111111 111122456789999
Q ss_pred ccCCCC
Q psy1090 156 GWYYPN 161 (169)
Q Consensus 156 ~TP~~n 161 (169)
|||..+
T Consensus 151 AT~~~~ 156 (459)
T 2z83_A 151 ATPPGT 156 (459)
T ss_dssp SSCTTC
T ss_pred cCCCcc
Confidence 999754
No 65
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.11 E-value=2.7e-10 Score=87.99 Aligned_cols=125 Identities=13% Similarity=0.106 Sum_probs=71.0
Q ss_pred cccCCCCCcHHHHH-HHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCCc
Q psy1090 4 VIPDPTRYRKSGKV-IAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTI 81 (169)
Q Consensus 4 iL~de~G~GKT~~~-i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (169)
++..++|+|||... +.++...... ..++||++|. .+..|+.+++. +..+. +......
T Consensus 23 lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~~~~~-------------- 81 (451)
T 2jlq_A 23 IMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVK-------------- 81 (451)
T ss_dssp EECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTCS--------------
T ss_pred EEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc----Cceee-eeecccc--------------
Confidence 67789999999874 4444443332 3689999998 56678887774 22221 1110000
Q ss_pred ccccccCCccccccCCCCeEEEecHHHHHhchhc-cccccccEEEEeCCcccCCcccHHHH-HHh---ccccccEEEEec
Q psy1090 82 KVPAKKGKTKKQISLKLPLILVTTPQIIENDFGF-LKKITWNCIIVDEGHSVKNKKSKLSI-KLT---ALRATFKVLLTG 156 (169)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~-~~~~~~~~vi~DEah~~k~~~~~~~~-~~~---~l~~~~~~~lT~ 156 (169)
........+ .+.|.+.+.+.... ..-.+++++|+||||++ +....... .+. .......++|||
T Consensus 82 ----------~~~~~~~~i-~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SA 149 (451)
T 2jlq_A 82 ----------SDHTGREIV-DLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTA 149 (451)
T ss_dssp ----------CCCCSSCCE-EEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred ----------ccCCCCceE-EEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEcc
Confidence 001134445 66777766543322 12236799999999987 22222111 111 113567899999
Q ss_pred cCCCC
Q psy1090 157 WYYPN 161 (169)
Q Consensus 157 TP~~n 161 (169)
||...
T Consensus 150 T~~~~ 154 (451)
T 2jlq_A 150 TPPGS 154 (451)
T ss_dssp SCTTC
T ss_pred CCCcc
Confidence 99654
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.07 E-value=5.9e-10 Score=85.83 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=68.7
Q ss_pred ccccCCCCCcHHHHHH-HHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 3 TVIPDPTRYRKSGKVI-AFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i-~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
.++..++|+|||..++ .++..+... ...+||++|. .+..|+.+++..+ .+. +.+..-. .
T Consensus 11 vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~----~v~-~~~~~~~----------~-- 71 (440)
T 1yks_A 11 TVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL----DVK-FHTQAFS----------A-- 71 (440)
T ss_dssp EEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS----CEE-EESSCCC----------C--
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC----CeE-Eecccce----------e--
Confidence 6788999999998863 444433332 3589999998 5667888888643 222 1111000 0
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHh-chhccccccccEEEEeCCcccCCcccHHH-HHHhc---cccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIEN-DFGFLKKITWNCIIVDEGHSVKNKKSKLS-IKLTA---LRATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~-~~~~~~~~~~~~vi~DEah~~k~~~~~~~-~~~~~---l~~~~~~~lT 155 (169)
.. ....-+ -..+...+.. ......-.+++++|+||+|++ +...... ..+.. ......++||
T Consensus 72 -----------v~-Tp~~l~-~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~S 137 (440)
T 1yks_A 72 -----------HG-SGREVI-DAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMT 137 (440)
T ss_dssp -----------CC-CSSCCE-EEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred -----------cc-CCccce-eeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEe
Confidence 00 011111 2223333322 112212246789999999998 2221111 11111 1356789999
Q ss_pred ccCCCC
Q psy1090 156 GWYYPN 161 (169)
Q Consensus 156 ~TP~~n 161 (169)
|||..+
T Consensus 138 AT~~~~ 143 (440)
T 1yks_A 138 ATPPGT 143 (440)
T ss_dssp SSCTTC
T ss_pred CCCCch
Confidence 999765
No 67
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.04 E-value=5.2e-10 Score=89.60 Aligned_cols=123 Identities=23% Similarity=0.145 Sum_probs=75.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCCc
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTI 81 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (169)
.++.-++|+|||......+. +. ..++||++|. .+..|+.+.+.+.. +..+....|...
T Consensus 235 vlv~ApTGSGKT~a~~l~ll---~~--g~~vLVl~PTReLA~Qia~~l~~~~-g~~vg~~vG~~~--------------- 293 (666)
T 3o8b_A 235 AHLHAPTGSGKSTKVPAAYA---AQ--GYKVLVLNPSVAATLGFGAYMSKAH-GIDPNIRTGVRT--------------- 293 (666)
T ss_dssp EEEECCTTSCTTTHHHHHHH---HT--TCCEEEEESCHHHHHHHHHHHHHHH-SCCCEEECSSCE---------------
T ss_pred EEEEeCCchhHHHHHHHHHH---HC--CCeEEEEcchHHHHHHHHHHHHHHh-CCCeeEEECcEe---------------
Confidence 46778999999966554332 22 3489999998 55568888776655 233333333311
Q ss_pred ccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccH-HHHHHhccc---cccEEEEecc
Q psy1090 82 KVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSK-LSIKLTALR---ATFKVLLTGW 157 (169)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~-~~~~~~~l~---~~~~~~lT~T 157 (169)
.....++ ++.|++.+.++ ..+...+++++|+||+|.+...... ....+..+. ....+++|||
T Consensus 294 ------------~~~~~~I-lV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT 359 (666)
T 3o8b_A 294 ------------ITTGAPV-TYSTYGKFLAD-GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATAT 359 (666)
T ss_dssp ------------ECCCCSE-EEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred ------------ccCCCCE-EEECcHHHHhC-CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCC
Confidence 0155677 99999988543 2334447899999999876421111 122223332 2236778999
Q ss_pred CCC
Q psy1090 158 YYP 160 (169)
Q Consensus 158 P~~ 160 (169)
|..
T Consensus 360 ~~~ 362 (666)
T 3o8b_A 360 PPG 362 (666)
T ss_dssp CTT
T ss_pred CCc
Confidence 864
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.04 E-value=9.9e-10 Score=77.71 Aligned_cols=138 Identities=13% Similarity=0.002 Sum_probs=75.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHH-HHhCC--CCceEEEecCc-chHHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHhh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI-IEEQA--LEPNLIVCPLS-VLNNWEAEFRKFAPF---VRTVKYYGNAIERKALQSEA 75 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~-~~~~~--~~~~Liv~P~~-~l~qW~~e~~~~~~~---~~~~~~~g~~~~~~~~~~~~ 75 (169)
.++..++|+|||......+... ...+. ...+++++|.. +..|..+.+.+.... ..+.. . ..
T Consensus 79 ~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~-~-~~---------- 146 (235)
T 3llm_A 79 VIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGY-S-VR---------- 146 (235)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEE-E-ET----------
T ss_pred EEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEE-e-ec----------
Confidence 4678899999997655444332 22222 23688888984 445666666654421 11110 0 00
Q ss_pred hcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHh----ccccccE
Q psy1090 76 LSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLT----ALRATFK 151 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~----~l~~~~~ 151 (169)
..........++ +++|.+.+.+.... .-.+++++|+||+|...-........++ .......
T Consensus 147 -------------~~~~~~~~~~~I-vv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 211 (235)
T 3llm_A 147 -------------FESILPRPHASI-MFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRI 211 (235)
T ss_dssp -------------TEEECCCSSSEE-EEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEE
T ss_pred -------------hhhccCCCCCeE-EEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeE
Confidence 000000134556 88998777654432 1246789999999973111111111222 2244568
Q ss_pred EEEeccCCCCCchhhc
Q psy1090 152 VLLTGWYYPNKWSKQC 167 (169)
Q Consensus 152 ~~lT~TP~~n~~~el~ 167 (169)
+++|||+-.+.+.+.|
T Consensus 212 il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 212 VLMSATIDTSMFCEYF 227 (235)
T ss_dssp EEEECSSCCHHHHHHT
T ss_pred EEEecCCCHHHHHHHc
Confidence 9999999876655544
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.03 E-value=2.5e-10 Score=91.96 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=69.4
Q ss_pred ccccCCCCCcHHHHH-HHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 3 TVIPDPTRYRKSGKV-IAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 3 ~iL~de~G~GKT~~~-i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
.++..++|+|||..+ +.++..+.. ....+||++|. .+..|+.+.+..+. .. +....-.. .
T Consensus 244 vlv~apTGSGKTl~~ll~il~~l~~--~~~~~lilaPTr~La~Q~~~~l~~~~--i~---~~~~~l~~---------v-- 305 (673)
T 2wv9_A 244 TVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLAPTRVVAAEMAEALRGLP--VR---YLTPAVQR---------E-- 305 (673)
T ss_dssp EEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTSC--CE---ECCC---C---------C--
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEccHHHHHHHHHHHHhcCC--ee---eecccccc---------c--
Confidence 578899999999885 444444333 23689999998 56678888887542 11 11110000 0
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHH-hchhccccccccEEEEeCCcccCCccc-HHHHHHhcc---ccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIE-NDFGFLKKITWNCIIVDEGHSVKNKKS-KLSIKLTAL---RATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~-~~~~~~~~~~~~~vi~DEah~~k~~~~-~~~~~~~~l---~~~~~~~lT 155 (169)
.....-+ -+.+...+. .......-.+++++|+||+|++. ... .....+..+ .....++||
T Consensus 306 -------------~tp~~ll-~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~-~~~~~~~~~l~~~~~~~~~~vl~~S 370 (673)
T 2wv9_A 306 -------------HSGNEIV-DVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD-PASIAARGYIATRVEAGEAAAIFMT 370 (673)
T ss_dssp -------------CCSCCCE-EEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC-HHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred -------------CCHHHHH-HHHHhhhhHHHHhcccccccceEEEEeCCcccC-ccHHHHHHHHHHhccccCCcEEEEc
Confidence 0011222 333333332 22222223468999999999982 111 111222222 456789999
Q ss_pred ccCCCC
Q psy1090 156 GWYYPN 161 (169)
Q Consensus 156 ~TP~~n 161 (169)
|||..+
T Consensus 371 AT~~~~ 376 (673)
T 2wv9_A 371 ATPPGT 376 (673)
T ss_dssp SSCTTC
T ss_pred CCCChh
Confidence 999754
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.00 E-value=9.3e-10 Score=96.31 Aligned_cols=133 Identities=15% Similarity=0.096 Sum_probs=81.0
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHh---------CCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCCHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEE---------QALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGNAIERK 69 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~---------~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~~~~~~ 69 (169)
+.+++-++|+|||+.+.-.+.....+ ....++|+|+|. ++..|-.++|.+.+. +.++..++|+.....
T Consensus 97 N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~ 176 (1724)
T 4f92_B 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCK 176 (1724)
T ss_dssp CEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCC
T ss_pred cEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCc
Confidence 35778899999998876544433322 123479999997 777777788865442 567777777532110
Q ss_pred HHHHhhhcCCCcccccccCCccccccCCCCeEEEecHHHHHhchhcc----ccccccEEEEeCCcccCCcccHHHHHH--
Q psy1090 70 ALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFL----KKITWNCIIVDEGHSVKNKKSKLSIKL-- 143 (169)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~----~~~~~~~vi~DEah~~k~~~~~~~~~~-- 143 (169)
+.....++ +++|++.+..-.... .-...+++|+||+|.+.++-......+
T Consensus 177 -----------------------~~~~~~~I-lVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~ 232 (1724)
T 4f92_B 177 -----------------------EEISATQI-IVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVA 232 (1724)
T ss_dssp -----------------------TTGGGCSE-EEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHH
T ss_pred -----------------------cccCCCCE-EEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHH
Confidence 00145677 999999864321110 012568999999998864322222211
Q ss_pred ------hcc-ccccEEEEeccC
Q psy1090 144 ------TAL-RATFKVLLTGWY 158 (169)
Q Consensus 144 ------~~l-~~~~~~~lT~TP 158 (169)
... .....++||||.
T Consensus 233 rl~~~~~~~~~~~riI~LSATl 254 (1724)
T 4f92_B 233 RAIRNIEMTQEDVRLIGLSATL 254 (1724)
T ss_dssp HHHHHHHHHTCCCEEEEEECSC
T ss_pred HHHHHHHhCCCCCcEEEEeccc
Confidence 112 234689999995
No 71
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.97 E-value=2e-09 Score=86.12 Aligned_cols=126 Identities=14% Similarity=0.127 Sum_probs=72.7
Q ss_pred ccccCCCCCcHHHHH-HHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 3 TVIPDPTRYRKSGKV-IAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 3 ~iL~de~G~GKT~~~-i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
.++..++|+|||... +.++..+.. ...++||++|. .+..|+.+++.. ..+. +.+.... .
T Consensus 189 vlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~~----~~v~-~~~~~l~----------~-- 249 (618)
T 2whx_A 189 TIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRG----LPIR-YQTPAVK----------S-- 249 (618)
T ss_dssp EEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT----SCEE-ECCTTSS----------C--
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhcC----Ccee-Eecccce----------e--
Confidence 578899999999884 555555443 23589999998 566788877752 2222 2221100 0
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhch-hccccccccEEEEeCCcccCCcccH-HHHHH-hcc--ccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIENDF-GFLKKITWNCIIVDEGHSVKNKKSK-LSIKL-TAL--RATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~-~~~~~~~~~~vi~DEah~~k~~~~~-~~~~~-~~l--~~~~~~~lT 155 (169)
.......+ .+.+...+.+.. ....-.+++++|+||||++ +.... ....+ ..+ .....++||
T Consensus 250 ------------~~tp~~~i-~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 250 ------------DHTGREIV-DLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp ------------CCCSSSCE-EEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred ------------ccCCCceE-EEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEE
Confidence 00123333 556666554322 1212346899999999997 22211 11222 222 346789999
Q ss_pred ccCCCC
Q psy1090 156 GWYYPN 161 (169)
Q Consensus 156 ~TP~~n 161 (169)
|||...
T Consensus 316 AT~~~~ 321 (618)
T 2whx_A 316 ATPPGS 321 (618)
T ss_dssp SSCTTC
T ss_pred CCCchh
Confidence 999654
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.78 E-value=2.1e-08 Score=79.14 Aligned_cols=54 Identities=15% Similarity=0.002 Sum_probs=36.8
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeC
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYG 63 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g 63 (169)
+++...+|+|||+..+..+.. . ..+++|++|+ .+..|+.+++.++ ..++....|
T Consensus 29 ~~~~a~TGtGKT~~~l~~~~~---~--~~~~~~~~~t~~l~~q~~~~~~~l--~~~~~~l~g 83 (540)
T 2vl7_A 29 LLLNAKPGLGKTVFVEVLGMQ---L--KKKVLIFTRTHSQLDSIYKNAKLL--GLKTGFLIG 83 (540)
T ss_dssp EEEECCTTSCHHHHHHHHHHH---H--TCEEEEEESCHHHHHHHHHHHGGG--TCCEEEC--
T ss_pred EEEEcCCCCcHHHHHHHHHHh---C--CCcEEEEcCCHHHHHHHHHHHHhc--CCcEEEecC
Confidence 577889999999765443321 1 3689999998 5677999999875 344444443
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.76 E-value=1.8e-08 Score=79.63 Aligned_cols=57 Identities=12% Similarity=0.027 Sum_probs=41.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCC--CceEEEEeCC
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAP--FVRTVKYYGN 64 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~--~~~~~~~~g~ 64 (169)
+++...+|+|||+..+.-+.. ...+++|++|. .+..|+.+++.++.. +.++....|.
T Consensus 25 ~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr 84 (551)
T 3crv_A 25 VALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGK 84 (551)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCH
T ss_pred EEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccc
Confidence 467789999999877654433 24689999998 566799999987743 4566665553
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.57 E-value=3.8e-07 Score=74.90 Aligned_cols=127 Identities=10% Similarity=0.000 Sum_probs=75.4
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcch-H---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVL-N---NWEAEFRKFAPFVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l-~---qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
|-|....+|.|||+.+...+...... ...++||+|+.-+ . +|...+-++. ++.+....|...... +...
T Consensus 94 G~IaeakTGeGKTLvf~Lp~~L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~l-GLsv~~i~Gg~~~~~--r~~a-- 166 (997)
T 2ipc_A 94 GKIAEMKTGEGKTLVATLAVALNALT--GKGVHVVTVNDYLARRDAEWMGPVYRGL-GLSVGVIQHASTPAE--RRKA-- 166 (997)
T ss_dssp TSEEECCSTHHHHHHHHHHHHHHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHTT-TCCEEECCTTCCHHH--HHHH--
T ss_pred CceeeccCCCchHHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHH--HHHH--
Confidence 34556789999998654333211222 3479999999654 3 4666666666 677777776433221 1111
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHH-----hch----hccccc---cccEEEEeCCcccCCcccHHHHHHhc
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIE-----NDF----GFLKKI---TWNCIIVDEGHSVKNKKSKLSIKLTA 145 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~-----~~~----~~~~~~---~~~~vi~DEah~~k~~~~~~~~~~~~ 145 (169)
...|| ++.|+..+. ... +.+... +..++|+||+|.+-....
T Consensus 167 ------------------y~~DI-vyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDea-------- 219 (997)
T 2ipc_A 167 ------------------YLADV-TYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEA-------- 219 (997)
T ss_dssp ------------------HTSSE-EEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSST--------
T ss_pred ------------------cCCCE-EEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCC--------
Confidence 33566 888887763 221 122233 678999999996432221
Q ss_pred cccccEEEEeccCCCCCchhhc
Q psy1090 146 LRATFKVLLTGWYYPNKWSKQC 167 (169)
Q Consensus 146 l~~~~~~~lT~TP~~n~~~el~ 167 (169)
..-+++|| |.+.. .++|
T Consensus 220 ---rtPLIISg-p~~~~-~~lY 236 (997)
T 2ipc_A 220 ---RTPLIISG-PAEKA-TDLY 236 (997)
T ss_dssp ---TSCEEEEE-SCSSC-HHHH
T ss_pred ---CCCeeeeC-CCccc-hHHH
Confidence 22388999 76655 4444
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.56 E-value=2e-07 Score=75.15 Aligned_cols=118 Identities=11% Similarity=0.043 Sum_probs=71.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCCc
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTI 81 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (169)
.++.-++|+|||..++..+. .. +..++++|. .+..|..+++.+. +..+...+|.... ...+
T Consensus 158 vlv~apTGSGKT~~al~~l~---~~---~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~---------iv~T- 219 (677)
T 3rc3_A 158 IFHSGPTNSGKTYHAIQKYF---SA---KSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERV---------TVQP- 219 (677)
T ss_dssp EEEECCTTSSHHHHHHHHHH---HS---SSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEE---------CCST-
T ss_pred EEEEcCCCCCHHHHHHHHHH---hc---CCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeE---------EecC-
Confidence 37788999999985443332 22 345999998 5667888888876 5566666665332 0000
Q ss_pred ccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcc--cHHHHHHhccc--cccEEEEecc
Q psy1090 82 KVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKK--SKLSIKLTALR--ATFKVLLTGW 157 (169)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~--~~~~~~~~~l~--~~~~~~lT~T 157 (169)
.....++ +..|.+.+.. ...++++|+||+|++.+.. ......+..+. ....+++|||
T Consensus 220 ------------pGr~~~i-l~~T~e~~~l------~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 220 ------------NGKQASH-VSCTVEMCSV------TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp ------------TCCCCSE-EEEEGGGCCS------SSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred ------------CCcccce-eEecHhHhhh------cccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 0023455 7777655321 2467999999999985432 22234444443 3455677777
No 76
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.54 E-value=2.5e-07 Score=75.82 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=72.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhC-CCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCC
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQ-ALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPT 80 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~-~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (169)
.++..++|+|||.+.-.++....... ....+++++|.. +..|+.+.+.... +..+....|... .+
T Consensus 112 vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~-~~~v~~~vG~~i--------~~---- 178 (773)
T 2xau_A 112 MVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEM-DVKLGEEVGYSI--------RF---- 178 (773)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHT-TCCBTTTEEEEE--------TT----
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHh-CCchhheeccee--------cc----
Confidence 47889999999984333322211111 134588999984 4557776665543 111110001000 00
Q ss_pred cccccccCCccccccCCCCeEEEecHHHHHhchh-ccccccccEEEEeCCcc-cCCccc--HHHHHHhc-cccccEEEEe
Q psy1090 81 IKVPAKKGKTKKQISLKLPLILVTTPQIIENDFG-FLKKITWNCIIVDEGHS-VKNKKS--KLSIKLTA-LRATFKVLLT 155 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~-~~~~~~~~~vi~DEah~-~k~~~~--~~~~~~~~-l~~~~~~~lT 155 (169)
........++ ++.|.+.+.+... ...-.+++++|+||+|. .-+... ...+.+.. .+....++||
T Consensus 179 ----------~~~~~~~~~I-~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~S 247 (773)
T 2xau_A 179 ----------ENKTSNKTIL-KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMS 247 (773)
T ss_dssp ----------EEECCTTCSE-EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ----------ccccCCCCCE-EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 0001145566 8888888765432 12234789999999995 221111 11122222 2345689999
Q ss_pred ccCCCCCchh
Q psy1090 156 GWYYPNKWSK 165 (169)
Q Consensus 156 ~TP~~n~~~e 165 (169)
||+-.+.+.+
T Consensus 248 AT~~~~~l~~ 257 (773)
T 2xau_A 248 ATLDAEKFQR 257 (773)
T ss_dssp SCSCCHHHHH
T ss_pred ccccHHHHHH
Confidence 9995444433
No 77
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.44 E-value=1.2e-06 Score=71.99 Aligned_cols=106 Identities=14% Similarity=0.036 Sum_probs=66.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc-ch---HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS-VL---NNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~-~l---~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
|.|....+|.|||+.+..-+...... ...++||+|+. +. .+|...+.+|. ++.+....|....... ...
T Consensus 126 G~Iaem~TGeGKTLa~~LP~~l~aL~--g~~v~VvTpTreLA~Qdae~m~~l~~~l-GLsv~~i~gg~~~~~r--~~~-- 198 (922)
T 1nkt_A 126 GNVAEMKTGEGKTLTCVLPAYLNALA--GNGVHIVTVNDYLAKRDSEWMGRVHRFL-GLQVGVILATMTPDER--RVA-- 198 (922)
T ss_dssp TEEEECCTTSCHHHHTHHHHHHHHTT--TSCEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHHH--HHH--
T ss_pred CCEEEecCCCccHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHH--HHh--
Confidence 45667889999998654332211112 34799999984 43 35888888887 7888777664332111 111
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHH-----Hhch----hccccccccEEEEeCCcccC
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQII-----ENDF----GFLKKITWNCIIVDEGHSVK 133 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~-----~~~~----~~~~~~~~~~vi~DEah~~k 133 (169)
..+|| ++.|+..+ .... +.+...++.++|+|||+++-
T Consensus 199 ------------------y~~DI-vygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 199 ------------------YNADI-TYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp ------------------HHSSE-EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred ------------------cCCCE-EEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 23466 88887776 3332 23444578899999999865
No 78
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.43 E-value=9.3e-07 Score=72.26 Aligned_cols=106 Identities=8% Similarity=-0.033 Sum_probs=66.5
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc-chH---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS-VLN---NWEAEFRKFAPFVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~-~l~---qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
|.|-...+|.|||+.+..-+..... ....++||+|+. +.. +|...+.+|. ++.+....|..........
T Consensus 98 G~Iaea~TGeGKTlaf~LP~~l~aL--~g~~vlVltptreLA~qd~e~~~~l~~~l-gl~v~~i~gg~~~~~r~~~---- 170 (844)
T 1tf5_A 98 GNIAEMKTGEGKTLTSTLPVYLNAL--TGKGVHVVTVNEYLASRDAEQMGKIFEFL-GLTVGLNLNSMSKDEKREA---- 170 (844)
T ss_dssp TSEEECCTTSCHHHHHHHHHHHHHT--TSSCEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTSCHHHHHHH----
T ss_pred CCEEEccCCcHHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHh----
Confidence 4466788999999865433321111 234799999984 443 4777777776 7787776665332211111
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHH-----Hhch----hccccccccEEEEeCCcccC
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQII-----ENDF----GFLKKITWNCIIVDEGHSVK 133 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~-----~~~~----~~~~~~~~~~vi~DEah~~k 133 (169)
..++| ++.|+..+ .... ..+...+..++|+|||+++-
T Consensus 171 ------------------~~~dI-v~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 171 ------------------YAADI-TYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp ------------------HHSSE-EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred ------------------cCCCE-EEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 23466 88888777 4432 23444578899999999864
No 79
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.39 E-value=8.8e-07 Score=72.35 Aligned_cols=106 Identities=10% Similarity=-0.082 Sum_probs=65.3
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc-chH---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS-VLN---NWEAEFRKFAPFVRTVKYYGNAIERKALQSEALS 77 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~-~l~---qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 77 (169)
|.|-...+|+|||+.+..-+..... ....++|++|+. +.. +|...+.++. ++.+....|...... +...
T Consensus 89 G~Iaem~TGsGKTlaf~LP~l~~~l--~g~~vlVltPTreLA~Q~~e~~~~l~~~l-gl~v~~i~GG~~~~~--r~~~-- 161 (853)
T 2fsf_A 89 RCIAEMRTGEGKTLTATLPAYLNAL--TGKGVHVVTVNDYLAQRDAENNRPLFEFL-GLTVGINLPGMPAPA--KREA-- 161 (853)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHT--TSSCCEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHH--HHHH--
T ss_pred CeeeeecCCchHHHHHHHHHHHHHH--cCCcEEEEcCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHH--HHHh--
Confidence 3455678999999865433322122 234799999985 433 4666666666 677777776533221 1111
Q ss_pred CCCcccccccCCccccccCCCCeEEEecHHHHH-----hch----hccccccccEEEEeCCcccC
Q psy1090 78 LPTIKVPAKKGKTKKQISLKLPLILVTTPQIIE-----NDF----GFLKKITWNCIIVDEGHSVK 133 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~-----~~~----~~~~~~~~~~vi~DEah~~k 133 (169)
...+| ++.|+..+. ... ..+...+..++|+||||++-
T Consensus 162 ------------------~~~dI-vvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 162 ------------------YAADI-TYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp ------------------HHSSE-EEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred ------------------cCCCE-EEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 23566 899987762 222 22444578899999999765
No 80
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.14 E-value=5.2e-06 Score=66.85 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=37.2
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcc-hHHHHHHHHHh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSV-LNNWEAEFRKF 52 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~-l~qW~~e~~~~ 52 (169)
.++.-.+|+|||.+...++..+...+ .++|+++|++. +++..+.+...
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHHHHT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcCchHHHHHHHHHHHhc
Confidence 35677899999999988888777654 68999999854 56777777654
No 81
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.01 E-value=4.2e-05 Score=60.78 Aligned_cols=114 Identities=17% Similarity=0.013 Sum_probs=66.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCCcc
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTIK 82 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (169)
.++.-.+|+|||.++.+++..+... ..++++++|+........+.. .....- +... ..
T Consensus 207 ~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~----~~~a~T----------ih~l-l~----- 264 (574)
T 3e1s_A 207 VVLTGGPGTGKSTTTKAVADLAESL--GLEVGLCAPTGKAARRLGEVT----GRTAST----------VHRL-LG----- 264 (574)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHH----TSCEEE----------HHHH-TT-----
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEecCcHHHHHHhHhhh----cccHHH----------HHHH-Hc-----
Confidence 3567789999998887777655543 368999999876654443321 000000 0000 00
Q ss_pred cccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhccccccEEEEeccCCCCC
Q psy1090 83 VPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYPNK 162 (169)
Q Consensus 83 ~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~lT~TP~~n~ 162 (169)
... +.+. ...-...+++++|+||++.+. .......+..+....++++.|-|-|..
T Consensus 265 -------------------~~~--~~~~--~~~~~~~~~dvlIIDEasml~--~~~~~~Ll~~~~~~~~lilvGD~~QL~ 319 (574)
T 3e1s_A 265 -------------------YGP--QGFR--HNHLEPAPYDLLIVDEVSMMG--DALMLSLLAAVPPGARVLLVGDTDQLP 319 (574)
T ss_dssp -------------------EET--TEES--CSSSSCCSCSEEEECCGGGCC--HHHHHHHHTTSCTTCEEEEEECTTSCC
T ss_pred -------------------CCc--chhh--hhhcccccCCEEEEcCccCCC--HHHHHHHHHhCcCCCEEEEEecccccC
Confidence 000 0000 011123478999999999974 234445566677788999999998854
Q ss_pred c
Q psy1090 163 W 163 (169)
Q Consensus 163 ~ 163 (169)
+
T Consensus 320 ~ 320 (574)
T 3e1s_A 320 P 320 (574)
T ss_dssp C
T ss_pred C
Confidence 3
No 82
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.95 E-value=0.0001 Score=59.20 Aligned_cols=148 Identities=11% Similarity=0.198 Sum_probs=76.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcc-hHHHHHHHHHhCCCceEEEEeCCHHHH-----------HHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSV-LNNWEAEFRKFAPFVRTVKYYGNAIER-----------KAL 71 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~-l~qW~~e~~~~~~~~~~~~~~g~~~~~-----------~~~ 71 (169)
++.-.+|+|||.+...++..+.. ....++|+++|++. +.+-.+.+.+. +.+++.......+. ..+
T Consensus 199 li~GppGTGKT~~~~~~i~~l~~-~~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~~R~~~~~r~~~~~~~~~~tl~~~~ 275 (624)
T 2gk6_A 199 LIQGPPGTGKTVTSATIVYHLAR-QGNGPVLVCAPSNIAVDQLTEKIHQT--GLKVVRLCAKSREAIDSPVSFLALHNQI 275 (624)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT-SSSCCEEEEESSHHHHHHHHHHHHTT--TCCEEECCCTGGGSCCCTTTTTBHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCcHHHHHHHHHHHHhc--CCeEEeeccccchhhccchhhhhHHHHH
Confidence 56678999999998887766553 24568999999865 45555556543 34444433321110 000
Q ss_pred H---------HhhhcCCCc-ccccc---cCC-----ccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccC
Q psy1090 72 Q---------SEALSLPTI-KVPAK---KGK-----TKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVK 133 (169)
Q Consensus 72 ~---------~~~~~~~~~-~~~~~---~~~-----~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k 133 (169)
. ......... ..+.. ... .........++ +++|...+.. ..+....|+++|+|||....
T Consensus 276 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v-I~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~ 352 (624)
T 2gk6_A 276 RNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADV-ICCTCVGAGD--PRLAKMQFRSILIDESTQAT 352 (624)
T ss_dssp TSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSE-EEEETGGGGC--GGGTTCCCSEEEETTGGGSC
T ss_pred HhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCE-EEEcChhhcc--hhhhcCCCCEEEEecccccC
Confidence 0 000000000 00000 000 00011245567 6666544332 23456789999999997654
Q ss_pred CcccHHHHHHhccccccEEEEeccCCCC
Q psy1090 134 NKKSKLSIKLTALRATFKVLLTGWYYPN 161 (169)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~lT~TP~~n 161 (169)
.+. . .+..+....++++-|=|-|-
T Consensus 353 e~~--~--li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 353 EPE--C--MVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp HHH--H--HHHHTTTBSEEEEEECTTSC
T ss_pred cHH--H--HHHHHhcCCeEEEecChhcc
Confidence 332 1 22222335688888888774
No 83
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.80 E-value=0.00016 Score=57.90 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=32.9
Q ss_pred ccccEEEEeCCcccCCcccHHHHHHhccccccEEEEeccCCCCCch
Q psy1090 119 ITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYPNKWS 164 (169)
Q Consensus 119 ~~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~lT~TP~~n~~~ 164 (169)
.+++++|+|||+.+. .......+..++...+++|-|=|-|-.+.
T Consensus 261 l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~liLvGD~~QL~~V 304 (608)
T 1w36_D 261 LHLDVLVVDEASMID--LPMMSRLIDALPDHARVIFLGDRDQLASV 304 (608)
T ss_dssp CSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEEEECTTSGGGT
T ss_pred CCCCEEEEechhhCC--HHHHHHHHHhCCCCCEEEEEcchhhcCCC
Confidence 478999999999764 23345556677778899999988876553
No 84
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.77 E-value=0.00018 Score=49.89 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=25.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS 40 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~ 40 (169)
+.-+||.|||..++..+......+ .+++|+.|.-
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g--~kVli~k~~~ 66 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAK--QHAIVFKPCI 66 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTT--CCEEEEECC-
T ss_pred EECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEecc
Confidence 456899999999988876655443 6889988863
No 85
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.76 E-value=0.0002 Score=59.00 Aligned_cols=148 Identities=13% Similarity=0.211 Sum_probs=76.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcch-HHHHHHHHHhCCCceEEEEeCCHHH-----------HHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVL-NNWEAEFRKFAPFVRTVKYYGNAIE-----------RKAL 71 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l-~qW~~e~~~~~~~~~~~~~~g~~~~-----------~~~~ 71 (169)
++.-.+|+|||.+...++..+... ...++|+++|++.. .+-.+.+.+. +.+++......++ ....
T Consensus 375 lI~GppGTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~--g~~vvRlg~~~r~~i~~~~~~~tlh~~~ 451 (800)
T 2wjy_A 375 LIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT--GLKVVRLCAKSREAIDSPVSFLALHNQI 451 (800)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT--TCCEEECCCGGGGGCCCTTGGGBHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh--CcceEeecccchhhhcchhhhhhHHHHH
Confidence 566789999999988877665542 35689999999654 4555555443 3344433322111 0000
Q ss_pred H---------Hhh-hcCCCccccc---ccCCc-----cccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccC
Q psy1090 72 Q---------SEA-LSLPTIKVPA---KKGKT-----KKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVK 133 (169)
Q Consensus 72 ~---------~~~-~~~~~~~~~~---~~~~~-----~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k 133 (169)
. ... .......... ..... ........++ +++|...+.. ..+....|+++|+|||....
T Consensus 452 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~V-I~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~ 528 (800)
T 2wjy_A 452 RNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADV-ICCTCVGAGD--PRLAKMQFRSILIDESTQAT 528 (800)
T ss_dssp HTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSE-EEEETGGGGC--TTTTTCCCSEEEETTGGGSC
T ss_pred HcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCE-EEEchhhhCC--hhhhcCCCCEEEEECCCCCC
Confidence 0 000 0000000000 00000 0011134566 6666554432 23456789999999997654
Q ss_pred CcccHHHHHHhccccccEEEEeccCCCC
Q psy1090 134 NKKSKLSIKLTALRATFKVLLTGWYYPN 161 (169)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~lT~TP~~n 161 (169)
.+. ..+..+....+++|-|=|-|-
T Consensus 529 e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 529 EPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp HHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred cHH----HHHHHHhcCCeEEEecccccC
Confidence 321 122233345688888888774
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00043 Score=57.11 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=76.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcc-hHHHHHHHHHhCCCceEEEEeCCHHH-----------HHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSV-LNNWEAEFRKFAPFVRTVKYYGNAIE-----------RKAL 71 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~-l~qW~~e~~~~~~~~~~~~~~g~~~~-----------~~~~ 71 (169)
++.-.+|+|||.++...+..+... ...++|+++|++. +.+-.+.+.+. +.+++........ ....
T Consensus 379 lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~--g~~ilR~g~~~r~~i~~~~~~~tl~~~~ 455 (802)
T 2xzl_A 379 LIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL--GLKVVRLTAKSREDVESSVSNLALHNLV 455 (802)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT--TCCEEECCCGGGTTSCCTTGGGBHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh--CccEEeecccchhhhcchhhhhhHHHHH
Confidence 566789999999988877665543 3468999999865 45666666654 3344443321110 0000
Q ss_pred HH-----------hhhcCCCccc-ccccCC-----ccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCC
Q psy1090 72 QS-----------EALSLPTIKV-PAKKGK-----TKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKN 134 (169)
Q Consensus 72 ~~-----------~~~~~~~~~~-~~~~~~-----~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~ 134 (169)
.. .......... ...... .........++ +++|...+.. ..+.. .|+.+|+|||+....
T Consensus 456 ~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~V-I~~T~~~~~~--~~L~~-~fd~viIDEA~q~~e 531 (802)
T 2xzl_A 456 GRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADV-VCCTCVGAGD--KRLDT-KFRTVLIDESTQASE 531 (802)
T ss_dssp HTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSE-EEEETTGGGC--TTCCS-CCSEEEETTGGGSCH
T ss_pred HhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCE-EEechhhcCh--HHHhc-cCCEEEEECccccch
Confidence 00 0000000000 000000 00011245566 6766655432 23344 899999999987643
Q ss_pred cccHHHHHHhccccccEEEEeccCCCC
Q psy1090 135 KKSKLSIKLTALRATFKVLLTGWYYPN 161 (169)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~lT~TP~~n 161 (169)
+ . ..+..+....+++|-|=|-|-
T Consensus 532 ~--~--~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 532 P--E--CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp H--H--HHHHHTTTBSEEEEEECTTSC
T ss_pred H--H--HHHHHHhCCCEEEEEeCcccc
Confidence 2 1 122233345688888888774
No 87
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.73 E-value=7.7e-05 Score=50.60 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=25.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL 39 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~ 39 (169)
++.-.||+|||..++..+......+ .+++++.|.
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~ 40 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPK 40 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeec
Confidence 4566899999998887776554433 578888877
No 88
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.63 E-value=0.00014 Score=50.78 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=25.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS 40 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~ 40 (169)
++.-+||.|||..++..+..+...+ .+++++.|.-
T Consensus 16 litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~ 50 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKI 50 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEecc
Confidence 4567899999999988877655443 5788887753
No 89
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.54 E-value=0.00083 Score=51.86 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=29.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLN 43 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~ 43 (169)
++.-..|+|||..+.+++..+...+ ..++++++|.....
T Consensus 49 li~G~aGTGKT~ll~~~~~~l~~~~-~~~il~~a~T~~Aa 87 (459)
T 3upu_A 49 TINGPAGTGATTLTKFIIEALISTG-ETGIILAAPTHAAK 87 (459)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcC-CceEEEecCcHHHH
Confidence 5667789999988877777766554 25799999987654
No 90
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.53 E-value=0.00082 Score=54.66 Aligned_cols=59 Identities=14% Similarity=-0.101 Sum_probs=40.3
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchH----HHHHHHHHhCCCceEEEEeC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLN----NWEAEFRKFAPFVRTVKYYG 63 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~----qW~~e~~~~~~~~~~~~~~g 63 (169)
|.|.-+.+|.|||+++...+...... .+.+.||+|+.-+. +|...+-+|. ++.+.....
T Consensus 90 G~iaEM~TGEGKTLva~lp~~lnAL~--G~~vhVvT~ndyLA~rdae~m~~l~~~L-glsvg~i~~ 152 (822)
T 3jux_A 90 GKVAEMKTGEGKTLAATMPIYLNALI--GKGVHLVTVNDYLARRDALWMGPVYLFL-GLRVGVINS 152 (822)
T ss_dssp TCEEECCTTSCHHHHTHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEEEET
T ss_pred CChhhccCCCCccHHHHHHHHHHHhc--CCceEEEeccHHHHHhHHHHHHHHHHHh-CCEEEEEcC
Confidence 56777889999998754332211112 35699999986542 5888888888 677776665
No 91
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.50 E-value=0.00038 Score=47.47 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=25.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL 39 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~ 39 (169)
++--+||+|||..++..+......+ .+++++.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~g--~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIAK--QKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEec
Confidence 3456799999999888776654333 688998886
No 92
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.48 E-value=0.00022 Score=54.68 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=64.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCCccc
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTIKV 83 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 83 (169)
+.-..|+|||......+. .++.+|++|. .....|.+.+.+.. ..
T Consensus 166 I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~~----------~~------------------ 210 (446)
T 3vkw_A 166 VDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANASG----------II------------------ 210 (446)
T ss_dssp EEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTTS----------CC------------------
T ss_pred EEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhcC----------cc------------------
Confidence 455789999977655442 2578999998 55567887774221 00
Q ss_pred ccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhccccccEEEEeccCCCC
Q psy1090 84 PAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYPN 161 (169)
Q Consensus 84 ~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~lT~TP~~n 161 (169)
..... -+.|++.+..........+++.+|+||+..+- .......+...++ .++++.|=|-|-
T Consensus 211 ------------~~~~~-~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 211 ------------VATKD-NVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp ------------CCCTT-TEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ------------ccccc-eEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 01111 35666665443333333568999999999762 2333333344444 889998887764
No 93
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.31 E-value=0.0011 Score=46.55 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=25.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS 40 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~ 40 (169)
..-+||.|||..++..+.... ....+++++-|.-
T Consensus 24 ~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~~ 57 (234)
T 2orv_A 24 ILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAK 57 (234)
T ss_dssp EECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEETT
T ss_pred EECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeecC
Confidence 356799999999888766544 3347888888863
No 94
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.21 E-value=0.002 Score=44.69 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=23.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS 40 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~ 40 (169)
+.-+||.|||...+..+..+...+ .+++|+-|.-
T Consensus 33 itG~M~sGKTT~Llr~~~r~~~~g--~kvli~kp~~ 66 (219)
T 3e2i_A 33 ITGSMFSGKSEELIRRLRRGIYAK--QKVVVFKPAI 66 (219)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC-
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CceEEEEecc
Confidence 455799999988887765444333 5678887754
No 95
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.85 E-value=0.0028 Score=43.21 Aligned_cols=33 Identities=18% Similarity=0.067 Sum_probs=23.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL 39 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~ 39 (169)
+--.||+|||...+-.+......+ .+++++-|.
T Consensus 25 iyG~MgsGKTt~Ll~~i~n~~~~~--~kvl~~kp~ 57 (195)
T 1w4r_A 25 ILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYA 57 (195)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEET
T ss_pred EECCCCCcHHHHHHHHHHHHHHcC--CeEEEEccc
Confidence 456899999977776666554443 678888776
No 96
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.85 E-value=0.0073 Score=44.18 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=22.3
Q ss_pred ccEEEEeCCcccCCcccHH---HHHHhcc-ccccEEEEeccC
Q psy1090 121 WNCIIVDEGHSVKNKKSKL---SIKLTAL-RATFKVLLTGWY 158 (169)
Q Consensus 121 ~~~vi~DEah~~k~~~~~~---~~~~~~l-~~~~~~~lT~TP 158 (169)
.+++++||+|.+....... ...+..+ ....+++++++.
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5789999999986421111 1222222 345678888863
No 97
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.80 E-value=0.0026 Score=51.44 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=40.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYY 62 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~ 62 (169)
.|..-+|+|||+++..++... .+|+|||+|+ ....||++++..|+|+..+..|-
T Consensus 32 ~l~g~tgs~kt~~~a~~~~~~-----~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fp 86 (664)
T 1c4o_A 32 TLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFRELFPENAVEYFI 86 (664)
T ss_dssp EEEECTTSCHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEcCCCcHHHHHHHHHHHHh-----CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcC
Confidence 355668999999887766432 3589999998 55679999999999776555443
No 98
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.59 E-value=0.0032 Score=50.54 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=42.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhC--CCceEEEEeCC
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFA--PFVRTVKYYGN 64 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~--~~~~~~~~~g~ 64 (169)
+++...+|+|||+..+..+...... ...+++|++|+ .+..|+.+++.++. ..+++....|.
T Consensus 25 ~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 25 VALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 5778899999998876554333322 23689999998 55679999988764 25666666653
No 99
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.57 E-value=0.0045 Score=45.45 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=16.9
Q ss_pred CccccCCCCCcHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~ 23 (169)
|.+|.-++|+|||..+-++...
T Consensus 53 ~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4578889999999887666543
No 100
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.52 E-value=0.021 Score=43.79 Aligned_cols=34 Identities=6% Similarity=-0.033 Sum_probs=19.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEE
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIV 36 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv 36 (169)
.+|..++|+|||..+-++...........+++.+
T Consensus 133 lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4566778888887666665554443323344433
No 101
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.52 E-value=0.032 Score=42.11 Aligned_cols=126 Identities=9% Similarity=-0.013 Sum_probs=64.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcc-hHHHHHHHHHhC---CC-ceEEEEeCCHHHHHHHHHhhhcCC
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSV-LNNWEAEFRKFA---PF-VRTVKYYGNAIERKALQSEALSLP 79 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~-l~qW~~e~~~~~---~~-~~~~~~~g~~~~~~~~~~~~~~~~ 79 (169)
+.-.-+.|||..+.+++.+.........+++++|..- ...+.+++..+. |. ++.......
T Consensus 183 i~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~~~~~~~--------------- 247 (385)
T 2o0j_A 183 CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWN--------------- 247 (385)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSCCEEEEC---------------
T ss_pred EEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhhhhccCC---------------
Confidence 3445588999887776665444444457888888743 333445555443 21 100000000
Q ss_pred CcccccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhc-cc--cccEEEEec
Q psy1090 80 TIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTA-LR--ATFKVLLTG 156 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~-l~--~~~~~~lT~ 156 (169)
...........+.++++ +.+.+.....+++|+||+|..++. .....++.. +. ...++++..
T Consensus 248 ---------~~~I~f~nGs~i~~lsa------~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~~~kiiiiS 311 (385)
T 2o0j_A 248 ---------KGSIELDNGSSIGAYAS------SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGRRSKIIITT 311 (385)
T ss_dssp ---------SSEEEETTSCEEEEEEC------SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTTCCEEEEEE
T ss_pred ---------ccEEEeCCCCEEEEEEC------CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCCCCcEEEEe
Confidence 00000001111212332 223344567899999999998752 233444432 22 346888889
Q ss_pred cCCCC
Q psy1090 157 WYYPN 161 (169)
Q Consensus 157 TP~~n 161 (169)
||-..
T Consensus 312 TP~g~ 316 (385)
T 2o0j_A 312 TPNGL 316 (385)
T ss_dssp CCCSS
T ss_pred CCCCc
Confidence 98644
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.44 E-value=0.03 Score=44.82 Aligned_cols=49 Identities=4% Similarity=-0.010 Sum_probs=34.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhC--CCCceEEEecCcc-hHHHHHHHHHh
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQ--ALEPNLIVCPLSV-LNNWEAEFRKF 52 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~--~~~~~Liv~P~~~-l~qW~~e~~~~ 52 (169)
++.-..|+|||.+.+.-+.++...+ ...++|+++++.. ..+..+.+.+.
T Consensus 26 lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 26 LVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 3445689999999998888877654 2357999998754 44555556554
No 103
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.40 E-value=0.0025 Score=46.20 Aligned_cols=25 Identities=4% Similarity=-0.094 Sum_probs=19.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~ 27 (169)
.+|..++|+|||..+-++...+...
T Consensus 70 vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4678899999998887777665543
No 104
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.28 E-value=0.01 Score=47.92 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=40.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYY 62 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~ 62 (169)
|..-+|+|||+++..++... .+|+|||+|+ ....||++|+..|+|+..+..|-
T Consensus 37 l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fp 90 (661)
T 2d7d_A 37 LLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFV 90 (661)
T ss_dssp EEECTTSCHHHHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred EECcCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEcc
Confidence 45568999999887665432 3589999998 55679999999998765555443
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.06 E-value=0.04 Score=43.93 Aligned_cols=130 Identities=10% Similarity=0.047 Sum_probs=64.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhcCCCccc
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGNAIERKALQSEALSLPTIKV 83 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 83 (169)
+.-.-|.|||..+.+++.+.........++++.|.. ......+.+..+....... .. ... .
T Consensus 183 i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~----------------~~-~~~-~ 244 (592)
T 3cpe_A 183 CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF----------------LQ-PGI-V 244 (592)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTT----------------TS-CCE-E
T ss_pred EEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHh----------------hc-ccc-c
Confidence 444568999987766665555444445788888874 3334445555554211000 00 000 0
Q ss_pred ccccCCccccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCCcccHHHHHHhc-cc--cccEEEEeccCCC
Q psy1090 84 PAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTA-LR--ATFKVLLTGWYYP 160 (169)
Q Consensus 84 ~~~~~~~~~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~~~~~~~~~~~~-l~--~~~~~~lT~TP~~ 160 (169)
. .............+.++++ +...+.....+++|+||+|..++.. ..+.++.. +. ...++++++||-.
T Consensus 245 ~--~~~~~i~~~nGs~i~~~s~------~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~ 315 (592)
T 3cpe_A 245 E--WNKGSIELDNGSSIGAYAS------SPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNG 315 (592)
T ss_dssp E--ECSSEEEETTSCEEEEEEC------CHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCT
T ss_pred c--CCccEEEecCCCEEEEEeC------CCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCC
Confidence 0 0000000001111212221 1223334567899999999987532 34444432 22 3468889999965
Q ss_pred C
Q psy1090 161 N 161 (169)
Q Consensus 161 n 161 (169)
.
T Consensus 316 ~ 316 (592)
T 3cpe_A 316 L 316 (592)
T ss_dssp T
T ss_pred c
Confidence 4
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.98 E-value=0.011 Score=43.98 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=22.5
Q ss_pred EEEEeCCcccCCcc-cHH-HHHHhccccccEEEEeccCC
Q psy1090 123 CIIVDEGHSVKNKK-SKL-SIKLTALRATFKVLLTGWYY 159 (169)
Q Consensus 123 ~vi~DEah~~k~~~-~~~-~~~~~~l~~~~~~~lT~TP~ 159 (169)
++|+||+|.+.... ... ...+.....+.+++++++..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 89999999885432 233 33333333566777776654
No 107
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.55 E-value=0.014 Score=43.45 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=17.7
Q ss_pred CccccCCCCCcHHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~ 24 (169)
|.+|.-++|+|||..+-+++...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46788899999998877666543
No 108
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.39 E-value=0.035 Score=40.46 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=25.0
Q ss_pred cccEEEEeCCcccC-Ccc-cHHHHHHhccccccEEEEeccCCCC
Q psy1090 120 TWNCIIVDEGHSVK-NKK-SKLSIKLTALRATFKVLLTGWYYPN 161 (169)
Q Consensus 120 ~~~~vi~DEah~~k-~~~-~~~~~~~~~l~~~~~~~lT~TP~~n 161 (169)
...++++||+|.+. ... ....+.+.......+++++.++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 56789999999985 211 1112222223456778888777653
No 109
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.24 E-value=0.015 Score=42.69 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=16.5
Q ss_pred CccccCCCCCcHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~ 23 (169)
|.+|.-++|+|||..+-++...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 4577889999999877666543
No 110
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.18 E-value=0.035 Score=38.23 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=12.7
Q ss_pred cccEEEEeCCcccCCc
Q psy1090 120 TWNCIIVDEGHSVKNK 135 (169)
Q Consensus 120 ~~~~vi~DEah~~k~~ 135 (169)
..+++|+||+|.+...
T Consensus 104 ~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 104 QFDLICIDDVDAVAGH 119 (242)
T ss_dssp GSSEEEEETGGGGTTC
T ss_pred CCCEEEEeccccccCC
Confidence 4578999999998643
No 111
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.93 E-value=0.065 Score=41.18 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=22.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
++-..|+|||.++..++.++...+ .++++++
T Consensus 105 ivG~~G~GKTTt~~kLA~~l~~~G--~kVllv~ 135 (443)
T 3dm5_A 105 MVGIQGSGKTTTVAKLARYFQKRG--YKVGVVC 135 (443)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred EECcCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 455699999999988887765433 5666665
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.83 E-value=0.079 Score=40.62 Aligned_cols=32 Identities=6% Similarity=-0.139 Sum_probs=22.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
++.-..|+|||.++..++..+...+ +++++++
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~ 132 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVA 132 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEe
Confidence 3456789999998888877665433 5566555
No 113
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.54 E-value=0.04 Score=41.42 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=21.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLN 43 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~ 43 (169)
+.+|.-++|+|||..+-++... ...+++.+-+..+..
T Consensus 150 ~vLL~GppGtGKT~la~aia~~-----~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAE-----SNATFFNISAASLTS 186 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH-----TTCEEEEECSCCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHh-----hcCcEEEeeHHHhhc
Confidence 4578889999999877665332 123444444444443
No 114
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.52 E-value=0.11 Score=35.38 Aligned_cols=22 Identities=5% Similarity=-0.053 Sum_probs=15.8
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
.+|.-+.|+|||..+-.+....
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3577889999997776665443
No 115
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.37 E-value=0.022 Score=43.72 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=16.6
Q ss_pred CccccCCCCCcHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~ 23 (169)
|.+|.-++|+|||..+-++...
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4577889999999877666543
No 116
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.27 E-value=0.016 Score=41.39 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=15.5
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.+|..++|+|||..+-++..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 356788999999977755543
No 117
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.042 Score=40.32 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=17.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+|..++|+|||..+-++...+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999988777766543
No 118
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.60 E-value=0.34 Score=35.68 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=30.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNN 44 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~q 44 (169)
.+.-++|+|||..++.++......+..++++.|...+.+.+
T Consensus 32 eI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 35678999999988888776665544568888888766554
No 119
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.60 E-value=0.46 Score=34.84 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=18.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
++..+.|+|||..+..++..+..
T Consensus 28 L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 28 LIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEECCCCchHHHHHHHHHHHHhC
Confidence 56789999999998888776653
No 120
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.23 E-value=0.13 Score=37.17 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=22.5
Q ss_pred cccEEEEeCCcccCCcccH-HHHHHhccccccEEEEeccCC
Q psy1090 120 TWNCIIVDEGHSVKNKKSK-LSIKLTALRATFKVLLTGWYY 159 (169)
Q Consensus 120 ~~~~vi~DEah~~k~~~~~-~~~~~~~l~~~~~~~lT~TP~ 159 (169)
+..++|+||+|.+...... ..+.+.......++++++++.
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 3678999999998532111 122222233455677766554
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.19 E-value=0.22 Score=36.79 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=17.2
Q ss_pred ccccCCCCCcHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+|.-+.|+|||..+-.+.....
T Consensus 47 vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp EEECBCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56778899999988776665543
No 122
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.94 Score=33.20 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=18.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.+|.-.+|+|||.++-.++..+..
T Consensus 48 lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 48 FYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 457788999999888777766654
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.85 E-value=0.16 Score=37.68 Aligned_cols=40 Identities=10% Similarity=-0.048 Sum_probs=28.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNW 45 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW 45 (169)
.+.-++|+|||..++.++...... .++++++.......++
T Consensus 65 ~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 65 EIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE 104 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH
Confidence 466789999998888887665543 3678888776655554
No 124
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.72 E-value=0.15 Score=39.08 Aligned_cols=46 Identities=7% Similarity=-0.115 Sum_probs=32.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEF 49 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~ 49 (169)
.+++-.+|+|||.-++.++...... ...+++++.......++...+
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHHHH
Confidence 3678899999998888777655432 245888888776666666554
No 125
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.5 Score=34.37 Aligned_cols=14 Identities=21% Similarity=0.352 Sum_probs=12.3
Q ss_pred cccEEEEeCCcccC
Q psy1090 120 TWNCIIVDEGHSVK 133 (169)
Q Consensus 120 ~~~~vi~DEah~~k 133 (169)
++.++|+||+|.+.
T Consensus 82 ~~kvviIdead~lt 95 (305)
T 2gno_A 82 TRKYVIVHDCERMT 95 (305)
T ss_dssp SSEEEEETTGGGBC
T ss_pred CceEEEeccHHHhC
Confidence 57899999999985
No 126
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.68 E-value=0.17 Score=39.33 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=36.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEE
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVK 60 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~ 60 (169)
|..-+|+|||+.+.+++.. ..+|+|||+|+ ....+|.+++..|.|+. +..
T Consensus 19 l~g~~gs~ka~~~a~l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~ 69 (483)
T 3hjh_A 19 LGELTGAACATLVAEIAER-----HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMN 69 (483)
T ss_dssp EECCCTTHHHHHHHHHHHH-----SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEE
T ss_pred EeCCCchHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEE
Confidence 4556899999877665532 24689999998 45679999999998754 443
No 127
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.64 E-value=0.19 Score=39.27 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=16.4
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|.-++|+|||..+-+++..
T Consensus 80 lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567889999999887666544
No 128
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.48 E-value=0.46 Score=38.90 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=17.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+|.-++|+|||..+-++...+.
T Consensus 210 vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHH
Confidence 56788999999987776665543
No 129
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.06 E-value=0.64 Score=34.04 Aligned_cols=30 Identities=13% Similarity=-0.076 Sum_probs=21.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 7 DPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 7 de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
...|.|||.++..++..+... .++++++.-
T Consensus 112 G~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 112 GVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp SSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 459999998887776665543 367777653
No 130
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=91.89 E-value=0.063 Score=43.08 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=25.2
Q ss_pred CCCCeEEEecHHHHHhchhc------c-ccccccEEEEeCCcccCC
Q psy1090 96 LKLPLILVTTPQIIENDFGF------L-KKITWNCIIVDEGHSVKN 134 (169)
Q Consensus 96 ~~~~ii~i~ty~~~~~~~~~------~-~~~~~~~vi~DEah~~k~ 134 (169)
...|+ |+++|+.+-...-. + ...+-.++|+||||++-+
T Consensus 174 ~~ADv-VV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADI-VIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSE-EEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hcCCE-EEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 56677 99999886543211 1 123456999999999854
No 131
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.78 E-value=0.39 Score=35.39 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=15.9
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
++..+.|+|||..+-++...+
T Consensus 42 ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 42 LFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 577899999998776665543
No 132
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.69 E-value=0.41 Score=33.06 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=32.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKF 52 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~~~~ 52 (169)
.+++-++|+|||.-++.++....... ..+++++.-.....+..+.+..+
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccCCHHHHHHHHHHc
Confidence 36788999999988887765433222 35788887766666655555443
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.17 E-value=0.45 Score=32.77 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=31.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRK 51 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~~~ 51 (169)
++.-++|+|||..++.++...... .++++++.......+..+.+..
T Consensus 27 ~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 27 LLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEHPVQVRQNMAQ 72 (247)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSCHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHHHH
Confidence 467789999998888776665443 3678888776655555555543
No 134
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=91.02 E-value=0.26 Score=33.68 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=25.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
+.+-..|.|||.+++.++..+...+ .+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G--~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT--CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcc
Confidence 4456789999999999888776554 57888765
No 135
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.01 E-value=0.33 Score=40.43 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=18.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
+.+|.-++|+|||..+-++...+..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3577889999999877777665543
No 136
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.98 E-value=0.24 Score=33.26 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=21.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEE
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIV 36 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv 36 (169)
.+|.-++|+|||..+-++....... ..+++++
T Consensus 57 ~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~ 88 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIANELAKR--NVSSLIV 88 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEE
Confidence 4677899999998877766555432 2444444
No 137
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.09 E-value=0.26 Score=34.39 Aligned_cols=42 Identities=5% Similarity=-0.065 Sum_probs=27.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEE-Ee-cCcchHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLI-VC-PLSVLNNWE 46 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Li-v~-P~~~l~qW~ 46 (169)
.++....|.|||..++.+...+...+ .++++ .+ |..-...|.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G--~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG--VRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCCTTCHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC--CCEEEEEeCCCCChhHHH
Confidence 56788899999999999888776654 34433 33 433444444
No 138
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.08 E-value=0.12 Score=39.25 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=29.9
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAE 48 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e 48 (169)
|.+|--.+|+|||..+=+++... ..+++.|..+.++..|.-|
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGGGSCSSTTH
T ss_pred ceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHHhhccccch
Confidence 77889999999998887766543 2456666667776666533
No 139
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.86 E-value=0.62 Score=33.93 Aligned_cols=46 Identities=4% Similarity=-0.099 Sum_probs=32.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFR 50 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~~ 50 (169)
.+++-.+|+|||.-++.++......+ .+++++.......+....+.
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHH
Confidence 46788999999988877766554333 68888887766666555544
No 140
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.80 E-value=0.33 Score=35.31 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=22.9
Q ss_pred CccccCCCCCcHHHHHHHHHHHHH-HhCCCCceEEE
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKII-EEQALEPNLIV 36 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~-~~~~~~~~Liv 36 (169)
+.+|..++|+|||..+.++..... ..+ .+++++
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~ 187 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLL 187 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEE
Confidence 356788999999998888777665 433 344444
No 141
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.56 E-value=2.8 Score=30.26 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=19.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
.-..|+|||.++..+...+.... ..+++++.
T Consensus 111 vG~~GsGKTTl~~~LA~~l~~~~-G~~V~lv~ 141 (296)
T 2px0_A 111 FGSTGAGKTTTLAKLAAISMLEK-HKKIAFIT 141 (296)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT-CCCEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 34579999988877766554322 24566655
No 142
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=89.53 E-value=0.44 Score=41.04 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=35.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCC-CceEEEecCcchHHHHHHHHHhC
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQAL-EPNLIVCPLSVLNNWEAEFRKFA 53 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~-~~~Liv~P~~~l~qW~~e~~~~~ 53 (169)
+.-..|+|||.+.+.-+.++...+.. .++|+++|....-+-.+.+.+..
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTP 55 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCS
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhh
Confidence 33457999999998888887766554 68999999887555555555444
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.92 E-value=0.13 Score=39.48 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=28.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
|.+|-..+|+|||..+=+++... ..+.+.|-.+.++..|.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQLVQMYI 256 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGCSSCS
T ss_pred eeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhhhhhccc
Confidence 67888999999998887766543 24566666667665554
No 144
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.66 E-value=0.13 Score=39.55 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=28.4
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEA 47 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~ 47 (169)
|.+|--.+|+|||..+=+++... ..+++.|-.+.++..|..
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~-----~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASGIVDKYIG 257 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGTCCSSSS
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehhhhccccch
Confidence 67888999999998887776543 235666666666554443
No 145
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=88.54 E-value=0.53 Score=32.30 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=25.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
+.+-.-|.|||..++.+...+...+ .++++|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG--RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC--CeEEEEeC
Confidence 4456789999999998887776543 67888764
No 146
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=88.45 E-value=0.49 Score=34.57 Aligned_cols=27 Identities=11% Similarity=-0.111 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 9 TRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 9 ~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
=|.|||.+++-+...+.+.+ +++|+|=
T Consensus 57 GGVGKTTtavNLA~aLA~~G--kkVllID 83 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSILG--KRVLQIG 83 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CccCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 48999999998887776655 5677775
No 147
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.99 E-value=0.68 Score=30.91 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=28.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe--cCcchHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC--PLSVLNNWEA 47 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~--P~~~l~qW~~ 47 (169)
+.+-.-|.|||..++.+...+...+ .++++|- |...+..|..
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~~~~~ 49 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLTNWSK 49 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHT
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHh
Confidence 3455679999999988887776543 5677776 4455556653
No 148
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.93 E-value=0.55 Score=34.34 Aligned_cols=33 Identities=12% Similarity=0.001 Sum_probs=24.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
+..-.-|.|||.++.++...+... ..++|+|-.
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~ 50 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARS--GKKTLVIST 50 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeC
Confidence 344567999999999888777654 367887764
No 149
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.65 E-value=0.52 Score=33.11 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=21.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 7 DPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 7 de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
.--|.|||..++.+...+... ..++|+|=
T Consensus 8 ~KGGvGKTT~a~nLA~~la~~--G~~VlliD 36 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLTSGLHAM--GKTIMVVG 36 (269)
T ss_dssp ECTTSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHC--CCcEEEEc
Confidence 356999999998887776643 35777753
No 150
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.64 E-value=0.24 Score=35.69 Aligned_cols=35 Identities=14% Similarity=-0.093 Sum_probs=23.3
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSV 41 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~ 41 (169)
|.+|.-++|+|||..+-+++..+ ..+++.+-...+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l 72 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGEL 72 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHh
Confidence 45677899999998877665544 245555554443
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.55 E-value=1.8 Score=29.30 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=27.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEF 49 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~ 49 (169)
.|.-+.|+|||..+..++......+ ++++++.......+....+
T Consensus 27 ~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 70 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEESRDSIIRQA 70 (235)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSSCHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEcccCHHHHHHHH
Confidence 4678899999988777765544333 5677776554444433333
No 152
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.51 E-value=0.66 Score=32.29 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=24.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.+-.-|.|||..++.+...+...+ .++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKG--KKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC--CcEEEEE
Confidence 4456789999999998887776543 5777765
No 153
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.32 E-value=0.68 Score=32.56 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=24.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.+-.-|.|||..++.+...+...+ .++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G--~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG--KKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 4456779999999998877776543 5788776
No 154
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=87.17 E-value=0.33 Score=32.99 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=23.7
Q ss_pred cccEEEEeCCcccCC---cccHHHHHHhccc----cccEEEEeccCC
Q psy1090 120 TWNCIIVDEGHSVKN---KKSKLSIKLTALR----ATFKVLLTGWYY 159 (169)
Q Consensus 120 ~~~~vi~DEah~~k~---~~~~~~~~~~~l~----~~~~~~lT~TP~ 159 (169)
.-.++|+||||.+-. ......+.+..+. ...-++|.+.|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 356899999999832 2222223444442 334678888883
No 155
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.15 E-value=0.17 Score=38.74 Aligned_cols=42 Identities=7% Similarity=0.016 Sum_probs=29.1
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAE 48 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e 48 (169)
|.+|--.+|+|||..+-+++... ..+++.+....++..|..|
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~-----~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQT-----SATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHH-----TCEEEEEESGGGCCSSSSH
T ss_pred CCceECCCCchHHHHHHHHHHHh-----CCCEEEEEHHHhhhccCch
Confidence 67888999999998887776543 2356666666666555433
No 156
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.13 E-value=0.69 Score=32.37 Aligned_cols=32 Identities=13% Similarity=-0.054 Sum_probs=24.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.+-.-|.|||..++.+...+...+ .++++|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG--HDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC--CcEEEEE
Confidence 4456789999999998887776543 5788876
No 157
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.13 E-value=0.66 Score=33.08 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=21.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 7 DPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 7 de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
.--|.|||..++.+...+...+ .++|+|=
T Consensus 9 ~KGGvGKTT~a~nLA~~La~~G--~rVlliD 37 (289)
T 2afh_E 9 GKGGIGKSTTTQNLVAALAEMG--KKVMIVG 37 (289)
T ss_dssp ECTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCcCcHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 3569999999998887776543 5677653
No 158
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.13 E-value=0.66 Score=33.42 Aligned_cols=29 Identities=10% Similarity=-0.109 Sum_probs=21.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 7 DPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 7 de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
---|.|||..++.+...+...+ .++|+|=
T Consensus 48 ~KGGvGKTT~a~nLA~~La~~G--~~VlliD 76 (307)
T 3end_A 48 GKGGIGKSTTSSNLSAAFSILG--KRVLQIG 76 (307)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 3679999999988877776543 5677764
No 159
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.10 E-value=0.66 Score=33.20 Aligned_cols=38 Identities=13% Similarity=-0.149 Sum_probs=25.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCceEEEe--cCcchHHHH
Q psy1090 7 DPTRYRKSGKVIAFFCKIIEEQALEPNLIVC--PLSVLNNWE 46 (169)
Q Consensus 7 de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~--P~~~l~qW~ 46 (169)
.--|.|||..+..+...+...+ .++|+|= |..-...|.
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G--~rVlliD~D~q~~~~~~l 83 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN--LKVLMIDKDLQATLTKDL 83 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCHHHHH
Confidence 4679999999988877666543 5777753 444444443
No 160
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.09 E-value=0.19 Score=38.81 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=28.1
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
|.+|--.+|+|||+.+=+++... ..+++.|....++..|.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~-----~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRT-----DATFIRVIGSELVQKYV 284 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGCCCSS
T ss_pred ceEeeCCCCCcHHHHHHHHHhcc-----CCCeEEEEhHHhhcccC
Confidence 67889999999998887766543 23566666666665554
No 161
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=86.66 E-value=0.81 Score=30.02 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=17.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+|.-++|+|||..+-+++..+.
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 35677899999988777766554
No 162
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.61 E-value=0.2 Score=38.32 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=27.7
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
|.+|-..+|+|||..+=+++... ..+++.|-.+.++..|.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGTCCSSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchhhcccc
Confidence 67888999999998887766543 24566666666655443
No 163
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.42 E-value=1.4 Score=32.59 Aligned_cols=45 Identities=4% Similarity=-0.023 Sum_probs=32.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEF 49 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~ 49 (169)
.+|+-.+|+|||.-++.++..... ...+++++.......|....+
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHH
Confidence 467889999999888877766554 346888888776655555444
No 164
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.38 E-value=0.36 Score=33.35 Aligned_cols=30 Identities=7% Similarity=-0.031 Sum_probs=22.2
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
.---|.|||..+..+...+...+ .++|+|=
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g--~~VlliD 35 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY--DKIYAVD 35 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC--SCEEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 44679999999988877765443 6777774
No 165
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=86.08 E-value=1.8 Score=35.13 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=20.2
Q ss_pred cccEEEEeCCcccCCcccHHHHHHhccccccEEEEecc
Q psy1090 120 TWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTGW 157 (169)
Q Consensus 120 ~~~~vi~DEah~~k~~~~~~~~~~~~l~~~~~~~lT~T 157 (169)
+.|++|+|||-.+- .....+.+. .-.+++||.|
T Consensus 255 ~~dlliVDEAAaIp--~pll~~ll~---~~~~v~~~tT 287 (671)
T 2zpa_A 255 QADWLVVDEAAAIP--APLLHQLVS---RFPRTLLTTT 287 (671)
T ss_dssp CCSEEEEETGGGSC--HHHHHHHHT---TSSEEEEEEE
T ss_pred cCCEEEEEchhcCC--HHHHHHHHh---hCCeEEEEec
Confidence 57899999999873 333222222 2236777766
No 166
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=86.07 E-value=0.9 Score=31.47 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=20.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhC
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQ 28 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~ 28 (169)
|-+.++|.|||..+++++..+.+++
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 3467899999999999988877665
No 167
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.93 E-value=0.95 Score=34.75 Aligned_cols=45 Identities=4% Similarity=-0.119 Sum_probs=32.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEF 49 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~ 49 (169)
.+++-.+|+|||.-++.++...... ..+++++.......|....+
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHH
Confidence 4678889999998888887766544 46888888776555555544
No 168
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.86 E-value=1.3 Score=40.36 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=30.2
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNN 44 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~q 44 (169)
.+|.-.+|+|||..+++++..... ...+++++...+.+.+
T Consensus 1430 vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1430 VEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCH
Confidence 567789999999999988775443 3467888888776654
No 169
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=85.85 E-value=0.96 Score=31.73 Aligned_cols=31 Identities=6% Similarity=-0.101 Sum_probs=23.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEE
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIV 36 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv 36 (169)
|-+-++|.|||..+++++..+.+++ .++..+
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G--~~V~~f 56 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACG--VKTILL 56 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCC--CceEEE
Confidence 4567899999999999988877655 334444
No 170
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.75 E-value=0.86 Score=32.94 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=23.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
.+-..|.|||.+++.+...+...+ +++|+|-
T Consensus 110 ts~kgG~GKTtva~nLA~~lA~~G--~rVLLID 140 (299)
T 3cio_A 110 TGATPDSGKTFVSSTLAAVIAQSD--QKVLFID 140 (299)
T ss_dssp EESSSSSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred ECCCCCCChHHHHHHHHHHHHhCC--CcEEEEE
Confidence 345679999999988887776543 6788775
No 171
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.66 E-value=0.94 Score=33.87 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=30.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
+++-++|+|||..++.++...... .++++++.......++.
T Consensus 78 ~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 78 EIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH
T ss_pred EEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHHH
Confidence 456789999999888887665543 35788888877666664
No 172
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=85.64 E-value=0.95 Score=32.20 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=22.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
.+-..|.|||..++.+...+...+ +++|+|-
T Consensus 88 ts~kgG~GKTt~a~nLA~~lA~~G--~rVLLID 118 (271)
T 3bfv_A 88 TSEAPGAGKSTIAANLAVAYAQAG--YKTLIVD 118 (271)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred ECCCCCCcHHHHHHHHHHHHHhCC--CeEEEEe
Confidence 345679999999988877776543 5777774
No 173
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=85.15 E-value=1.1 Score=31.99 Aligned_cols=42 Identities=7% Similarity=-0.043 Sum_probs=28.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe--c-CcchHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC--P-LSVLNNWEA 47 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~--P-~~~l~qW~~ 47 (169)
+.+-.-|.|||..+..+...+...+ .++|+|= | ...+..|..
T Consensus 9 v~s~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 9 VGNEKGGAGKSTIAVHLVTALLYGG--AKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp ECCSSSCTTHHHHHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCCCHHHHhC
Confidence 4456679999999998887776543 5677764 4 445555553
No 174
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=84.93 E-value=0.81 Score=32.02 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=23.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.+-.-|.|||..++.+...+...+ .++|+|=
T Consensus 11 v~s~kGGvGKTt~a~~LA~~la~~g--~~VlliD 42 (257)
T 1wcv_1 11 LANQKGGVGKTTTAINLAAYLARLG--KRVLLVD 42 (257)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC--CCEEEEE
Confidence 3455679999999998887776543 6788774
No 175
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.78 E-value=0.75 Score=32.27 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=17.3
Q ss_pred CccccCCCCCcHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~ 23 (169)
|.+|.-++|+|||..+-++...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5678899999999887666543
No 176
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=84.73 E-value=0.97 Score=33.42 Aligned_cols=32 Identities=16% Similarity=-0.007 Sum_probs=23.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+..---|.|||.++.++...+...+ .++|+|-
T Consensus 30 v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD 61 (349)
T 3ug7_A 30 MFGGKGGVGKTTMSAATGVYLAEKG--LKVVIVS 61 (349)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHSS--CCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 3455679999999998887776543 5777776
No 177
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=84.19 E-value=1.4 Score=31.15 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=23.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
|-+-++|.|||..+++++..+.+++ .++..+=|
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G--~~V~~fKP 63 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAG--IDVAVCKP 63 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEee
Confidence 3467899999999999988877665 34444433
No 178
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=83.94 E-value=0.77 Score=33.86 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=27.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe--cCcchHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC--PLSVLNNWE 46 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~--P~~~l~qW~ 46 (169)
+...--|.|||.++.++...+... .+++|+|- |...+..|.
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~~l 62 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhHHh
Confidence 344567999999998887666543 35777776 445555554
No 179
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.91 E-value=2.9 Score=30.36 Aligned_cols=32 Identities=6% Similarity=0.017 Sum_probs=21.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
+.-..|.|||.++..++..+... .++++++.-
T Consensus 109 ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~ 140 (306)
T 1vma_A 109 VVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAA 140 (306)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred EEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcc
Confidence 34469999998887776665443 356666653
No 180
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.82 E-value=2.1 Score=39.22 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=32.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
+|+-++|+|||.-++.++...... .++++++.-.....||.
T Consensus 736 lIaG~PG~GKTtLalqlA~~~a~~--g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 736 EIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECCCcHHHHH
Confidence 688999999998888887665432 45788888888888875
No 181
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=83.54 E-value=1.1 Score=30.35 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=29.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe--cCcchHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC--PLSVLNNWEAE 48 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~--P~~~l~qW~~e 48 (169)
+.+.--|.|||..++.+...+...+ ++++|= |...+..|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHHhcC
Confidence 3455679999999988877765443 677754 66666677653
No 182
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=83.17 E-value=1.1 Score=32.10 Aligned_cols=32 Identities=6% Similarity=-0.088 Sum_probs=23.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.+-..|.|||..+..+...+... .+++|+|=
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID 128 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQT--NKRVLLID 128 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEe
Confidence 344567999999998887776644 36787774
No 183
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=83.02 E-value=0.94 Score=31.18 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=22.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.+---|.|||..++.+...+... ...++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEE
Confidence 344567999999998887766543 135677765
No 184
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.81 E-value=1.4 Score=32.82 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=28.2
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLN 43 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~ 43 (169)
.++.-++|+|||..++.++......+ .+++++.......
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~ 104 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALD 104 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcc
Confidence 35677999999999888877655433 5788887765443
No 185
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=82.72 E-value=1.1 Score=33.34 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=23.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL 39 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~ 39 (169)
.---|.|||.++.++...+......+++|+|-..
T Consensus 24 sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 24 GGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred eCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3457999999998887776521234678887643
No 186
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.65 E-value=0.71 Score=30.06 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=18.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.+|.-+.|+|||..+-+++..+..
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 567889999999888777665543
No 187
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.20 E-value=1.2 Score=31.15 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=25.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe--cCcchHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC--PLSVLNNW 45 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~--P~~~l~qW 45 (169)
+.+---|.|||..++.+...+. . ..++|+|= |..-...|
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~--g~~VlliD~D~~~~~~~~ 72 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-K--NNKVLLIDMDTQASITSY 72 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-T--TSCEEEEEECTTCHHHHH
T ss_pred EEeCCCCchHHHHHHHHHHHHH-C--CCCEEEEECCCCCCHHHH
Confidence 4456679999999988877665 3 36777774 33433344
No 188
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.14 E-value=3.4 Score=31.65 Aligned_cols=46 Identities=7% Similarity=-0.002 Sum_probs=31.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEF 49 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~ 49 (169)
.+++-.+|+|||.-++.++....... ..+++++.......+....+
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s~~~l~~r~ 251 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMSAQQLVMRM 251 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHH
Confidence 46788999999988887776655432 35788888765555555443
No 189
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=82.07 E-value=2.9 Score=33.72 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=34.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHh-C-CCCceEEEecCc-chHHHHHHHHHhC
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEE-Q-ALEPNLIVCPLS-VLNNWEAEFRKFA 53 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~-~-~~~~~Liv~P~~-~l~qW~~e~~~~~ 53 (169)
++.-..|+|||.+.+.-+.++... + ....+|+|+.+. ...+..+.+.+..
T Consensus 19 lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 19 LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 445678999999988877777665 2 345789998764 4455666666554
No 190
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=81.21 E-value=1.4 Score=32.66 Aligned_cols=32 Identities=9% Similarity=-0.123 Sum_probs=23.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+...--|.|||.+++.+...+... ..++|+|=
T Consensus 6 v~s~KGGvGKTT~a~nLA~~LA~~--G~rVLlID 37 (361)
T 3pg5_A 6 FFNNKGGVGKTTLSTNVAHYFALQ--GKRVLYVD 37 (361)
T ss_dssp BCCSSCCHHHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 445567999999998887776553 36787774
No 191
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.06 E-value=1.6 Score=29.06 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=16.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+|.-+.|+|||..+-.+...+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 45677889999977766655443
No 192
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=81.05 E-value=1.4 Score=32.19 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=23.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+..-.-|.|||..+.++...+... ..++++|-
T Consensus 23 v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD 54 (329)
T 2woo_A 23 FVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLIS 54 (329)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 445678999999998887776644 35777764
No 193
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=80.96 E-value=1.9 Score=31.96 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=27.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec--CcchHHHH
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP--LSVLNNWE 46 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P--~~~l~qW~ 46 (169)
+..--|.|||.++.++...+......+++|+|-- .+.+..|.
T Consensus 23 ~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~ 66 (348)
T 3io3_A 23 VGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAF 66 (348)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHH
T ss_pred EeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHh
Confidence 3446799999999888777652133467777763 44455444
No 194
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.73 E-value=0.85 Score=31.72 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=16.4
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|.-++|+|||..+-++...
T Consensus 42 vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478889999999877666543
No 195
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=80.14 E-value=2.1 Score=32.71 Aligned_cols=31 Identities=16% Similarity=0.004 Sum_probs=22.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 7 DPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 7 de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
--.|.|||.++..++..+.... ..++++|.-
T Consensus 107 G~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~ 137 (433)
T 2xxa_A 107 GLQGAGKTTSVGKLGKFLREKH-KKKVLVVSA 137 (433)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTS-CCCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 4589999999998887776551 356666663
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.07 E-value=1.1 Score=32.21 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=24.2
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
|.+|.-++|+|||..+-++.... ..+.+.+-...+...|.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~-----~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWF 90 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT-----TCEEEEECHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHHh-----CCCEEEEEhHHHHhhhc
Confidence 35678899999998776655432 23455444444444443
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.63 E-value=0.7 Score=30.05 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=17.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+|.-++|+|||..+-++.....
T Consensus 46 vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 46778999999988877766544
No 198
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=79.36 E-value=2 Score=34.03 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=23.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
++.--.|.|||.++.++...+.+.+ .++|+|-
T Consensus 12 ~~sgkGGvGKTT~a~~lA~~lA~~G--~rVLlvd 43 (589)
T 1ihu_A 12 FFTGKGGVGKTSISCATAIRLAEQG--KRVLLVS 43 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEeCCCcCHHHHHHHHHHHHHHHCC--CcEEEEE
Confidence 3445679999999999887776554 5777766
No 199
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.03 E-value=1 Score=31.71 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=16.5
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|.-++|+|||..+-++...
T Consensus 67 vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 567789999999887766554
No 200
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.00 E-value=2.4 Score=31.54 Aligned_cols=39 Identities=8% Similarity=-0.078 Sum_probs=27.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNN 44 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~q 44 (169)
.+.-++|+|||..++.++...... .++++++.......+
T Consensus 65 ~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccch
Confidence 355689999998888777665443 367888887765554
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.62 E-value=0.99 Score=28.59 Aligned_cols=18 Identities=0% Similarity=-0.176 Sum_probs=14.1
Q ss_pred ccccCCCCCcHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~ 20 (169)
.+|.-|+|+|||..+-++
T Consensus 27 vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 567889999999766444
No 202
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.58 E-value=0.72 Score=34.16 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=22.3
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcc
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSV 41 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~ 41 (169)
+.+|.-++|+|||..+-++.... ..+++.+-...+
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~-----~~~~~~i~~~~l 153 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS-----GATFFSISASSL 153 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT-----TCEEEEEEGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-----CCeEEEEehHHh
Confidence 35678899999998776664432 234555544444
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.09 E-value=2.8 Score=28.09 Aligned_cols=41 Identities=7% Similarity=-0.206 Sum_probs=25.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc--chHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS--VLNNWEAEF 49 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~--~l~qW~~e~ 49 (169)
.|.-+.|+|||..+..++. .. .++++++.-.. ...+|.+..
T Consensus 24 ~i~G~~GsGKTtl~~~l~~---~~--~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 24 QVYGPYASGKTTLALQTGL---LS--GKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp EEECSTTSSHHHHHHHHHH---HH--CSEEEEEESSCCCCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH---Hc--CCcEEEEECCCCCCHHHHHHHH
Confidence 5677899999987776665 22 35677776544 334555433
No 204
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=77.93 E-value=2 Score=33.30 Aligned_cols=46 Identities=4% Similarity=-0.163 Sum_probs=32.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEF 49 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~ 49 (169)
.+++-.+|+|||.-++.++...... ...+++++.-.....|....+
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSCHHHHHHHH
T ss_pred EEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCCHHHHHHHH
Confidence 4678899999998888877655432 135888888776655655544
No 205
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=77.76 E-value=2.6 Score=31.36 Aligned_cols=32 Identities=6% Similarity=-0.173 Sum_probs=23.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.+---|.|||..++.+...+...+ .++|+|-
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g--~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMG--KKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHT--CCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCC--CCEEEEE
Confidence 3445679999999988877766543 5787776
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.29 E-value=1.3 Score=30.88 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=16.1
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.+|.-++|+|||..+-++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 457888999999977766544
No 207
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.95 E-value=1.5 Score=31.16 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=16.4
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|.-++|+|||..+-++...
T Consensus 53 vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 577889999999877666544
No 208
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.87 E-value=1.3 Score=34.04 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=24.9
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcch
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVL 42 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l 42 (169)
|.+|..++|+|||..+-++...+ +...+.+-+....+.
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l---~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQEL---GSKVPFCPMVGSEVY 102 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CTTSCEEEEEGGGGC
T ss_pred eEEEECCCcCCHHHHHHHHHHHh---CCCceEEEEeHHHHH
Confidence 46788999999998887776553 212345555444443
No 209
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=76.83 E-value=1.4 Score=33.06 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=25.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe-cCcchHHHH
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC-PLSVLNNWE 46 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~-P~~~l~qW~ 46 (169)
.---|.|||.++.++...+...+ .++|+|- |.+.+.+|.
T Consensus 8 ~gkGG~GKTt~a~~la~~la~~g--~~vllvd~~~~~l~~~~ 47 (374)
T 3igf_A 8 LGKSGVARTKIAIAAAKLLASQG--KRVLLAGLAEPVLPLLL 47 (374)
T ss_dssp ECSBHHHHHHHHHHHHHHHHHTT--CCEEEEECSCSHHHHHH
T ss_pred eCCCCCcHHHHHHHHHHHHHHCC--CCeEEEeCCCCChHHhh
Confidence 34458999999988877666543 4566554 555555543
No 210
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=76.83 E-value=1.1 Score=30.78 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=18.0
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
-++...+|+|||..+.+++..+
T Consensus 61 ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999998887765
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.44 E-value=1.9 Score=30.75 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=16.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
.+|.-++|+|||..+-++....
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 4677899999998776665544
No 212
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=76.42 E-value=2.8 Score=28.42 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=33.2
Q ss_pred hccccccccEEEEeCCccc---C-CcccHHHHHHhccccccEEEEeccCCCCCchhh
Q psy1090 114 GFLKKITWNCIIVDEGHSV---K-NKKSKLSIKLTALRATFKVLLTGWYYPNKWSKQ 166 (169)
Q Consensus 114 ~~~~~~~~~~vi~DEah~~---k-~~~~~~~~~~~~l~~~~~~~lT~TP~~n~~~el 166 (169)
..+..-.+|++|+||.-.. . -+.......+..-....-+++||--.+..+.|+
T Consensus 114 ~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 114 RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 3444568999999998431 1 123344555555566678999997665554443
No 213
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=76.28 E-value=0.63 Score=29.49 Aligned_cols=17 Identities=0% Similarity=-0.212 Sum_probs=12.9
Q ss_pred ccccCCCCCcHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIA 19 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~ 19 (169)
.+|.-|+|+|||..+-+
T Consensus 30 vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 30 VFLTGEAGSPFETVARY 46 (143)
T ss_dssp EEEEEETTCCHHHHHGG
T ss_pred EEEECCCCccHHHHHHH
Confidence 56778999999965533
No 214
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=75.75 E-value=2.8 Score=31.74 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=22.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCc
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLS 40 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~ 40 (169)
.++.-.+|+|||...-.++......+ .+++|+=|+.
T Consensus 56 ~~i~G~tGsGKs~~~~~li~~~~~~g--~~viv~Dpkg 91 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYTGLLRG--DRMVIVDPNG 91 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTT--CEEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 45667899999987544444444322 4666666764
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=75.11 E-value=2.6 Score=29.41 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=14.0
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.-++|+|||..+-++.
T Consensus 32 vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLH 50 (265)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5678899999996664443
No 216
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=74.57 E-value=2.2 Score=32.68 Aligned_cols=32 Identities=6% Similarity=-0.034 Sum_probs=22.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
+....|+|||.++..++..+...+ .++++|..
T Consensus 104 ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~ 135 (432)
T 2v3c_C 104 LVGIQGSGKTTTAAKLARYIQKRG--LKPALIAA 135 (432)
T ss_dssp EECCSSSSTTHHHHHHHHHHHHHH--CCEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 344689999999888877666543 56666653
No 217
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=74.25 E-value=1.8 Score=29.33 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=15.9
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.++.-.+|+|||..++..+..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 456778999999988776544
No 218
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=74.23 E-value=3.4 Score=30.93 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=23.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHh----CCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEE----QALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~----~~~~~~Liv~ 37 (169)
+...--|.|||.++..+...+... ....++|+|=
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 445567999999998887776542 2235676664
No 219
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=73.51 E-value=6 Score=34.26 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=35.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEE
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVK 60 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~ 60 (169)
|..-+|+|||+.+.+++. ...+|+|||+|. ....+|.+++..|. +..+..
T Consensus 22 l~G~~gs~ka~~~a~l~~-----~~~~p~lvv~~~~~~A~~l~~el~~f~-~~~V~~ 72 (1151)
T 2eyq_A 22 LGELTGAACATLVAEIAE-----RHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMN 72 (1151)
T ss_dssp BCCCCTTHHHHHHHHHHH-----SSSSEEEEEESSHHHHHHHHHHHGGGC-SSCEEE
T ss_pred EeCCchHHHHHHHHHHHH-----hhCCCEEEEeCCHHHHHHHHHHHHhhc-CCcEEE
Confidence 445689999987655432 224689999998 45679999999986 444444
No 220
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=73.18 E-value=1.6 Score=31.02 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=15.9
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
+.+|.-++|+|||..+-++..
T Consensus 56 ~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 356788999999987766543
No 221
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.96 E-value=1.5 Score=32.26 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=17.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
.+|.-++|+|||..+-++...+
T Consensus 73 vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 73 VLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999998887776554
No 222
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=72.63 E-value=4.4 Score=27.42 Aligned_cols=31 Identities=6% Similarity=-0.074 Sum_probs=22.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+-...|-|||..|+++....... ..+++|+-
T Consensus 33 v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQ 63 (196)
T 1g5t_A 33 VFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQ 63 (196)
T ss_dssp EEESSSSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 44567999999998887655543 47888884
No 223
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=72.23 E-value=6.1 Score=29.42 Aligned_cols=42 Identities=12% Similarity=-0.075 Sum_probs=27.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
.++.-.+|+|||..+-.++..... ...+++|+=|..-...+.
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~ 79 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPEREYKEMC 79 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCCSHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcCHHHHH
Confidence 467789999999776555544432 235677777765444443
No 224
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=71.80 E-value=3 Score=30.07 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=24.1
Q ss_pred ccEEEEeCCcccCC----cccHHHHHHhcc---ccccEEEEeccC
Q psy1090 121 WNCIIVDEGHSVKN----KKSKLSIKLTAL---RATFKVLLTGWY 158 (169)
Q Consensus 121 ~~~vi~DEah~~k~----~~~~~~~~~~~l---~~~~~~~lT~TP 158 (169)
.-++|+||+|.+.. ........++.+ ..+..+++||.+
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~ 173 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSE 173 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCc
Confidence 45789999999864 122334444433 246788888876
No 225
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=71.24 E-value=1.5 Score=29.25 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=17.6
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.++.-+.|+|||..+++++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467788999999999988875
No 226
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=71.24 E-value=11 Score=26.44 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=28.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhC---------CCCceEEEecCcchHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQ---------ALEPNLIVCPLSVLNNWEAEFR 50 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~---------~~~~~Liv~P~~~l~qW~~e~~ 50 (169)
+|.-+.|+|||..+..++..+. .+ ..++++++.......+....+.
T Consensus 34 ~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~ 88 (279)
T 1nlf_A 34 ALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLH 88 (279)
T ss_dssp EEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHH
Confidence 4567889999988877766443 22 1346777666555554443343
No 227
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=70.86 E-value=9.1 Score=27.13 Aligned_cols=42 Identities=7% Similarity=-0.169 Sum_probs=25.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
+|.-+.|+|||..+..++....... ..+++++.......+..
T Consensus 39 ~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~~~~~~~ 80 (296)
T 1cr0_A 39 MVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEESVEETA 80 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSSCHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcCCHHHHH
Confidence 4677899999987766655544332 23677776543333433
No 228
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=70.73 E-value=3.8 Score=28.39 Aligned_cols=31 Identities=13% Similarity=-0.126 Sum_probs=22.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
++.--.|+|||..+..++..+. . ..++++|-
T Consensus 18 ~~~GkgGvGKTTl~~~La~~l~-~--g~~v~vvd 48 (262)
T 1yrb_A 18 VFVGTAGSGKTTLTGEFGRYLE-D--NYKVAYVN 48 (262)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT-T--TSCEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHH-C--CCeEEEEe
Confidence 4566789999988888776654 3 35676665
No 229
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.73 E-value=2.8 Score=30.23 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=14.8
Q ss_pred CccccCCCCCcHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i 21 (169)
+.+|.-|+|+|||..+-++.
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHH
Confidence 35678899999997664443
No 230
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=70.24 E-value=2.5 Score=30.34 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=16.7
Q ss_pred CccccCCCCCcHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~ 23 (169)
+.+|.-++|+|||..+-++...
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3578889999999877666543
No 231
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=69.64 E-value=2.3 Score=31.51 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=16.2
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|..++|+|||..+-++...
T Consensus 75 ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567889999999877665543
No 232
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=69.52 E-value=2.3 Score=31.34 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=21.2
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL 39 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~ 39 (169)
+.+|.-++|+|||..+-++.... ..+.+.+-..
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~ 85 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL-----DVPFTMADAT 85 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechH
Confidence 35678899999998776654432 2455544433
No 233
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=69.49 E-value=5.9 Score=28.45 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=21.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 7 DPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 7 de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
-..|.|||..+..+...+... .++++++.-
T Consensus 105 g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~ 134 (295)
T 1ls1_A 105 GLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (295)
T ss_dssp CCTTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 578999998887776665443 367777664
No 234
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.30 E-value=5.9 Score=30.98 Aligned_cols=31 Identities=6% Similarity=0.008 Sum_probs=22.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
+--.|+|||.++..++.++...+ .++++|..
T Consensus 107 vG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~ 137 (504)
T 2j37_W 107 VGLQGSGKTTTCSKLAYYYQRKG--WKTCLICA 137 (504)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 34579999999888877665433 56777776
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=68.90 E-value=7 Score=25.51 Aligned_cols=22 Identities=5% Similarity=-0.149 Sum_probs=15.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~ 25 (169)
+|.-.+|+|||..+-.+...+.
T Consensus 17 ~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 17 WLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 4667799999987766555443
No 236
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=68.80 E-value=7 Score=31.87 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=32.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhC--CCCceEEEecCcc-hHHHHHHHHHh
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQ--ALEPNLIVCPLSV-LNNWEAEFRKF 52 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~--~~~~~Liv~P~~~-l~qW~~e~~~~ 52 (169)
++.-..|+|||.+...-+.++.... ....+|+|+.+.- ..+..+.+.+.
T Consensus 28 lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 28 LIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 3445689999999888888777643 3357899988643 33444444433
No 237
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=68.48 E-value=4.6 Score=29.11 Aligned_cols=31 Identities=6% Similarity=-0.255 Sum_probs=21.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
.-..|.|||..+..+...+... .++++++.-
T Consensus 104 ~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~ 134 (297)
T 1j8m_F 104 VGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGA 134 (297)
T ss_dssp ECSSCSSTTHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHC--CCeEEEEec
Confidence 3578999998887776665543 356776664
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=68.41 E-value=5.8 Score=30.29 Aligned_cols=31 Identities=10% Similarity=-0.066 Sum_probs=21.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
.-..|.|||.++..+...+... .++++++.-
T Consensus 104 ~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~ 134 (425)
T 2ffh_A 104 VGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (425)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec
Confidence 4568999998887777665533 366777663
No 239
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=68.27 E-value=2.9 Score=30.28 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=15.6
Q ss_pred CccccCCCCCcHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i 21 (169)
+.+|.-++|+|||..+-++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 35778899999998776653
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=67.93 E-value=1.8 Score=31.36 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=16.0
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
+.+|..++|+|||..+-++..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 457888999999977765543
No 241
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=67.48 E-value=8.5 Score=28.22 Aligned_cols=38 Identities=5% Similarity=-0.176 Sum_probs=25.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhC----CCCceEEEecCcc
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQ----ALEPNLIVCPLSV 41 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~----~~~~~Liv~P~~~ 41 (169)
.+.-++|+|||..++.++....... ..++++++.....
T Consensus 126 ~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 126 EAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 5778999999988877665422211 2457888877654
No 242
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=67.33 E-value=13 Score=26.29 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=33.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHhC
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFA 53 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~~~~~ 53 (169)
+.-++|+|||..++.++..-..+ ..+.+++.-.....+..+....+.
T Consensus 26 i~g~p~~~~~~l~~qfl~~g~~~--Ge~~~~~~~~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 26 HEEDASSRGKDILFYILSRKLKS--DNLVGMFSISYPLQLIIRILSRFG 72 (260)
T ss_dssp EECSGGGCHHHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHTT
T ss_pred EEeCCCccHHHHHHHHHHHHHHC--CCcEEEEEEeCCHHHHHHHHHHcC
Confidence 33488999997778887765544 368888887777777666666553
No 243
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=67.30 E-value=25 Score=23.54 Aligned_cols=37 Identities=3% Similarity=-0.030 Sum_probs=24.4
Q ss_pred HhCCCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCC
Q psy1090 26 EEQALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 26 ~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
.....+++||+|+.- ......+.+.+. +..+..++|.
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~ 64 (212)
T 3eaq_A 27 YVASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGD 64 (212)
T ss_dssp HHHCCSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSS
T ss_pred HhCCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECC
Confidence 344467999999974 444455555544 5677778875
No 244
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.27 E-value=2.5 Score=32.52 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=18.8
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.+|..++|+|||..+-++...+..
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHS
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 578899999999888777665543
No 245
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=67.14 E-value=21 Score=22.64 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=24.5
Q ss_pred HhCCCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCC
Q psy1090 26 EEQALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 26 ~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
.....+++||+|+.. ......+.+... +..+..++|.
T Consensus 31 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~ 68 (163)
T 2hjv_A 31 MTENPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGG 68 (163)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCC
Confidence 334457899999974 444555556544 5677888875
No 246
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=66.83 E-value=8.6 Score=25.25 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=16.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~ 27 (169)
++-..|+|||..+..++..+...
T Consensus 9 i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 9 VVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhhHhc
Confidence 44578999998777776665443
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.65 E-value=2.4 Score=28.95 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=16.4
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.++.-.+|+|||..++.++.
T Consensus 37 ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46788999999988877754
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.50 E-value=16 Score=26.26 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=20.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
|.-..|+|||...-.+...+... .+.+++..-
T Consensus 105 lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~ 136 (302)
T 3b9q_A 105 IVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAG 136 (302)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHT--TCCEEEECC
T ss_pred EEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEee
Confidence 45679999997665554444332 366776653
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=65.30 E-value=4.3 Score=27.63 Aligned_cols=37 Identities=5% Similarity=-0.147 Sum_probs=22.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhC----CCCceEEEecCc
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQ----ALEPNLIVCPLS 40 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~----~~~~~Liv~P~~ 40 (169)
.|.-+.|+|||..+..++....... ...+++.+.-..
T Consensus 28 ~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 28 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4667899999988777655322111 134566666543
No 250
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=65.28 E-value=19 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=23.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-HhCCCCceEEEecCcchHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKII-EEQALEPNLIVCPLSVLNNW 45 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~-~~~~~~~~Liv~P~~~l~qW 45 (169)
.|.-+.|+|||..+-.++.... .. ....+++.-.....+.
T Consensus 34 ~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~ 74 (251)
T 2ehv_A 34 LLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDL 74 (251)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCCHHHH
Confidence 4567899999977665553222 22 2456666555444433
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=65.23 E-value=7.3 Score=28.27 Aligned_cols=38 Identities=3% Similarity=-0.185 Sum_probs=25.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHh----CCCCceEEEecCcc
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEE----QALEPNLIVCPLSV 41 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~----~~~~~~Liv~P~~~ 41 (169)
++.-++|+|||..++.++...... +..++++++.-...
T Consensus 111 ~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred EEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 567789999998887776543211 11457788876654
No 252
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=64.68 E-value=3.4 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=15.5
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.+|.-++|+|||..+-++..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 356788999999976655543
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=64.60 E-value=1.1 Score=33.42 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.4
Q ss_pred cccEEEEeCCcccCC
Q psy1090 120 TWNCIIVDEGHSVKN 134 (169)
Q Consensus 120 ~~~~vi~DEah~~k~ 134 (169)
...++++||||.+-+
T Consensus 262 ~~~~i~iDEa~~~~~ 276 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVD 276 (392)
T ss_dssp TTCEEEETTGGGGCC
T ss_pred ccEEEEEecHHHHhC
Confidence 356899999999875
No 254
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=64.13 E-value=3.5 Score=29.47 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=16.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
.+|..+.|+|||..+-++...+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 3567788999998777666554
No 255
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=63.50 E-value=4.8 Score=26.21 Aligned_cols=19 Identities=5% Similarity=-0.185 Sum_probs=14.3
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.-.+|+|||..+-.+.
T Consensus 8 i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3567789999997776554
No 256
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=63.41 E-value=3.7 Score=29.27 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=17.0
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|..++|+|||..+.+++..
T Consensus 107 ~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 467789999999988877653
No 257
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=62.75 E-value=10 Score=27.74 Aligned_cols=31 Identities=6% Similarity=-0.100 Sum_probs=19.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.-+.|+|||.+.-.+...+... .+.++++.
T Consensus 134 lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g 164 (328)
T 3e70_C 134 FVGFNGSGKTTTIAKLANWLKNH--GFSVVIAA 164 (328)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 55679999997655554444332 35666654
No 258
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=62.60 E-value=8.1 Score=30.58 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=23.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEE
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIV 36 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv 36 (169)
+..-..|.|||..+.++...+...+ .++++|
T Consensus 331 ~~~~~~g~Gktt~a~~lA~~l~~~g--~~vllv 361 (589)
T 1ihu_A 331 MLMGKGGVGKTTMAAAIAVRLADMG--FDVHLT 361 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEecCCCCChhhHHHHHHHHHHHCC--CcEEEE
Confidence 4566789999999988887766554 567776
No 259
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.37 E-value=5 Score=29.22 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=17.8
Q ss_pred ccccCCCCCcHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+|..+.|+|||..+-++...+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 35678999999988877766553
No 260
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=62.28 E-value=2.3 Score=30.84 Aligned_cols=20 Identities=20% Similarity=0.067 Sum_probs=15.6
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.+|..++|+|||..+-++..
T Consensus 48 vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 56788999999977765544
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=62.11 E-value=5.3 Score=26.53 Aligned_cols=20 Identities=15% Similarity=-0.071 Sum_probs=14.7
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.+|.-.+|+|||..+-.+..
T Consensus 28 i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 35778899999977655543
No 262
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=61.45 E-value=3.8 Score=30.42 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=12.8
Q ss_pred cccCCCCCcHHH--HHHHHH
Q psy1090 4 VIPDPTRYRKSG--KVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~--~~i~~i 21 (169)
++..++|.|||. .||.++
T Consensus 29 vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 29 AIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 466789999994 455553
No 263
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.17 E-value=8.6 Score=28.01 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=16.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.+|.-+.|+|||..+-.++.....
T Consensus 48 vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 48 IFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 456678899999877666655443
No 264
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=60.98 E-value=4.9 Score=30.11 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=15.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHh----CCCCceEEEe
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEE----QALEPNLIVC 37 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~----~~~~~~Liv~ 37 (169)
+..---|.|||.++..+...+... ....++|+|=
T Consensus 116 v~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 116 VVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp ECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred EEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 445567999999998887766521 2235666663
No 265
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=60.66 E-value=4.1 Score=31.65 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=15.8
Q ss_pred CccccCCCCCcHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i 21 (169)
|.+|.-++|+|||..+-++.
T Consensus 240 ~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHH
Confidence 46788999999998776654
No 266
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=60.35 E-value=15 Score=28.64 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=29.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFR 50 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~~e~~ 50 (169)
.|.-+.|+|||..+..++...... ..+++.+.+.....+......
T Consensus 285 ~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~~~~l~~~~~ 329 (525)
T 1tf7_A 285 LATGATGTGKTLLVSRFVENACAN--KERAILFAYEESRAQLLRNAY 329 (525)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHH
Confidence 456789999998777666554332 346777877665555554443
No 267
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=60.09 E-value=4.7 Score=31.25 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=16.3
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.+|.-++|+|||..+=++..
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467889999999987766544
No 268
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=60.05 E-value=4 Score=26.01 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=16.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~ 25 (169)
+|.-+.|+|||..+-++.....
T Consensus 40 ~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 40 YVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp EEESSSTTTTCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4677899999977766655443
No 269
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=59.88 E-value=4.7 Score=28.42 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=15.5
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.+|.-++|+|||..+-++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 357788999999976655543
No 270
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=59.56 E-value=5.5 Score=28.31 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.2
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
.+|..+.|+|||..+-++...+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 4677899999998887776554
No 271
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=58.75 E-value=13 Score=24.90 Aligned_cols=29 Identities=7% Similarity=-0.050 Sum_probs=17.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 7 DPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 7 de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
---|+|||.++=.+...+...+ .++++.-
T Consensus 7 G~DGsGKsTq~~~L~~~L~~~g--~~v~~tr 35 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLEKRG--KKVILKR 35 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCC--CcEEEEE
Confidence 3469999988766655554433 3444443
No 272
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=58.73 E-value=5.2 Score=28.85 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=23.3
Q ss_pred ccEEEEeCCcccCCc-ccHHHHHHhcc---ccccEEEEeccCC
Q psy1090 121 WNCIIVDEGHSVKNK-KSKLSIKLTAL---RATFKVLLTGWYY 159 (169)
Q Consensus 121 ~~~vi~DEah~~k~~-~~~~~~~~~~l---~~~~~~~lT~TP~ 159 (169)
.-++|+||+|.+... .......+..+ ..+..+++||.+.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~ 180 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEM 180 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCch
Confidence 457899999997542 12222333322 2366888888763
No 273
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=58.66 E-value=6.4 Score=27.46 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=14.9
Q ss_pred cccCCCCCcHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~ 22 (169)
++.-.+|+|||..+-.+..
T Consensus 5 ~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 5678899999987766654
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.64 E-value=3.9 Score=26.05 Aligned_cols=17 Identities=18% Similarity=0.000 Sum_probs=12.4
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 5 ~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 5 LITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46778999999765433
No 275
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=58.63 E-value=53 Score=24.34 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=33.3
Q ss_pred CCcHHHHHHHHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeC
Q psy1090 10 RYRKSGKVIAFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYG 63 (169)
Q Consensus 10 G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g 63 (169)
..+|....+.++..........++||+|+. ..+....+.+... +..+..++|
T Consensus 341 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g 393 (494)
T 1wp9_A 341 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVG 393 (494)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECC
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEec
Confidence 345665555555555444567899999998 4444555555544 567778887
No 276
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=58.58 E-value=11 Score=29.94 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=27.0
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCC-C-ceEEEecCc
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQAL-E-PNLIVCPLS 40 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~-~-~~Liv~P~~ 40 (169)
.+++-.+|+|||...-+++..+...... . .++++=|+.
T Consensus 217 lLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 217 LLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred eEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 5778899999999888888777654322 2 455566775
No 277
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=58.01 E-value=3.4 Score=30.14 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=17.0
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.++.-+.|+|||..+++++.
T Consensus 149 gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467788999999988887653
No 278
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=57.91 E-value=3.4 Score=34.28 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=26.0
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWE 46 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~qW~ 46 (169)
|.+|...+|+|||..+-+++... ..+.+.+-.+.++..|.
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWF 552 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHHHTTTC
T ss_pred eEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchhhcccc
Confidence 67889999999997775554321 23455555556666664
No 279
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=57.39 E-value=6.2 Score=29.06 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=16.5
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
+|.-++|+|||..++.++..
T Consensus 127 LI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 127 IVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEECSCSSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHh
Confidence 67789999999888887654
No 280
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=57.02 E-value=5.3 Score=28.29 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=14.9
Q ss_pred CccccCCCCCcHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i 21 (169)
|.+|..+.|+|||..+=++.
T Consensus 46 GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 45678899999997665543
No 281
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=56.97 E-value=9.1 Score=31.33 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=17.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
.+|..++|+|||..+-++....
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999998887766554
No 282
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=56.74 E-value=5.5 Score=29.44 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=16.7
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|.-.+|+|||..++.++..
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 368889999999888777643
No 283
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=56.51 E-value=5 Score=32.86 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=17.8
Q ss_pred CccccCCCCCcHHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~ 24 (169)
+.+|..++|+|||..+-++...+
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 35788899999998877766554
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=56.27 E-value=3.7 Score=32.05 Aligned_cols=19 Identities=16% Similarity=0.016 Sum_probs=14.8
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|..++|+|||..+-++.
T Consensus 44 VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp EEEECCSSSSHHHHHHHGG
T ss_pred eEeecCchHHHHHHHHHHH
Confidence 5788999999997665543
No 285
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.27 E-value=11 Score=27.27 Aligned_cols=41 Identities=12% Similarity=0.364 Sum_probs=22.9
Q ss_pred cccEEEEeCCcccCCccc-HHHHHHhccccccEEEEeccCCC
Q psy1090 120 TWNCIIVDEGHSVKNKKS-KLSIKLTALRATFKVLLTGWYYP 160 (169)
Q Consensus 120 ~~~~vi~DEah~~k~~~~-~~~~~~~~l~~~~~~~lT~TP~~ 160 (169)
++.++|+||+|.+..... ...+.+.......+++++.+-..
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 678999999999632111 11222333344556666665443
No 286
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=56.24 E-value=36 Score=21.58 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=24.3
Q ss_pred HhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCC
Q psy1090 26 EEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 26 ~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
.....+++||+|+. .......+.+... +..+..++|.
T Consensus 26 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~ 63 (165)
T 1fuk_A 26 DSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSD 63 (165)
T ss_dssp HHTTCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECC
Confidence 33456789999998 4445555555543 5677778875
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=56.04 E-value=7.6 Score=24.69 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=12.7
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.--+|+|||..+=.+
T Consensus 5 ~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 5 ILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEECSSSSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 56778999999766444
No 288
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=55.75 E-value=8 Score=25.08 Aligned_cols=20 Identities=5% Similarity=-0.076 Sum_probs=14.3
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
++.-.+|+|||..+=.+...
T Consensus 7 ~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 7 VVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56778999999776555443
No 289
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=55.67 E-value=13 Score=27.38 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=20.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
+.-.+|.|||..+..++..+...+ .+++++.
T Consensus 84 i~G~~G~GKSTl~~~L~~~l~~~g--~kV~vi~ 114 (355)
T 3p32_A 84 ITGVPGVGKSTAIEALGMHLIERG--HRVAVLA 114 (355)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC--CceEEEe
Confidence 455699999988877766654332 4444444
No 290
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=55.67 E-value=15 Score=27.24 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=19.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
|.-..|+|||.+.-.+...+... .+.+++..
T Consensus 162 lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g 192 (359)
T 2og2_A 162 IVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAA 192 (359)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred EEcCCCChHHHHHHHHHhhcccc--CCEEEEec
Confidence 45679999997765554444332 36666665
No 291
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.13 E-value=7.5 Score=25.52 Aligned_cols=20 Identities=15% Similarity=-0.139 Sum_probs=14.0
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.+|.-.+|+|||..+=.+..
T Consensus 3 I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHH
Confidence 35667899999976654443
No 292
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.92 E-value=6.2 Score=30.33 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=16.1
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.+|...+|+|||..+-++..
T Consensus 52 ~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 467788999999987755544
No 293
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=54.88 E-value=8.5 Score=24.78 Aligned_cols=19 Identities=21% Similarity=-0.085 Sum_probs=14.1
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.-.+|+|||..+=.+.
T Consensus 7 i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4577889999997664443
No 294
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=54.78 E-value=8.3 Score=24.93 Aligned_cols=19 Identities=5% Similarity=-0.048 Sum_probs=14.1
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.--+|+|||..+-.+.
T Consensus 14 i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4577789999997665544
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=54.53 E-value=10 Score=27.17 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=14.1
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
.++-.+|+|||..+-.+...+
T Consensus 35 ~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 35 FFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 356789999997664444433
No 296
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.45 E-value=6.1 Score=30.28 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=15.1
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.+|.-++|+|||..+-++..
T Consensus 53 vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 47788999999977655443
No 297
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=54.36 E-value=40 Score=21.58 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCC
Q psy1090 20 FFCKIIEEQALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 20 ~i~~~~~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
.+..+......+++||+|+.. ......+.+.+. +..+..++|.
T Consensus 24 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~ 67 (175)
T 2rb4_A 24 ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGE 67 (175)
T ss_dssp HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCC
Confidence 334444445567899999984 444455555543 5677788875
No 298
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.20 E-value=15 Score=26.56 Aligned_cols=32 Identities=3% Similarity=-0.113 Sum_probs=19.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEec
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCP 38 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P 38 (169)
+.-..|+|||...-.+...+.. ..+.+++..-
T Consensus 107 lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~ 138 (304)
T 1rj9_A 107 VVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAG 138 (304)
T ss_dssp EECSTTSSHHHHHHHHHHHHHT--TTCCEEEECC
T ss_pred EECCCCCcHHHHHHHHHHHHHh--cCCEEEEEee
Confidence 4467999999766555444332 2456666653
No 299
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=53.90 E-value=7.9 Score=26.20 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=14.7
Q ss_pred CccccCCCCCcHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i 21 (169)
--+|.-.+|+||+.++--+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34677889999998775443
No 300
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=53.70 E-value=8 Score=26.39 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=14.6
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.+|.--+|+|||.++-.+..
T Consensus 19 I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35667899999987755543
No 301
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=53.44 E-value=8.4 Score=24.49 Aligned_cols=18 Identities=11% Similarity=-0.230 Sum_probs=13.1
Q ss_pred ccccCCCCCcHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~ 20 (169)
.+|.-.+|+|||..+=.+
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEESCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 456678999999766444
No 302
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=52.81 E-value=9.5 Score=24.33 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=12.6
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 11 ~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 11 VLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp EEESCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46678999999766444
No 303
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=52.49 E-value=8.9 Score=33.42 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=26.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhC----CCCceEEEecC
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQ----ALEPNLIVCPL 39 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~----~~~~~Liv~P~ 39 (169)
++.-..|+|||.+.+.=+..+...+ ....+|+++++
T Consensus 27 ~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft 66 (1232)
T 3u4q_A 27 LVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFT 66 (1232)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSS
T ss_pred EEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEecc
Confidence 4556689999998887666666553 23578999885
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=52.41 E-value=9.4 Score=25.24 Aligned_cols=18 Identities=22% Similarity=0.019 Sum_probs=13.3
Q ss_pred ccccCCCCCcHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~ 20 (169)
.+|.-.+|+|||..+=.+
T Consensus 21 I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 357788999999765444
No 305
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=52.38 E-value=8.8 Score=28.08 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=16.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
.+|.-+.|+|||..+-+++...
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999998776665443
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=52.33 E-value=9.6 Score=24.70 Aligned_cols=19 Identities=16% Similarity=-0.092 Sum_probs=13.8
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.-.+|+|||..+-.+.
T Consensus 5 I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3567789999997764443
No 307
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=51.97 E-value=19 Score=24.99 Aligned_cols=21 Identities=10% Similarity=-0.115 Sum_probs=15.2
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|..-+|+|||..+-.+...
T Consensus 7 Ivl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 356677999999877665544
No 308
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.83 E-value=4.6 Score=33.55 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=15.7
Q ss_pred CccccCCCCCcHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i 21 (169)
|.+|--.+|+|||..+=+++
T Consensus 240 GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67888999999997764443
No 309
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.67 E-value=11 Score=31.43 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=17.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+|.-++|+|||..+-++.....
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 36788999999988776665543
No 310
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=51.63 E-value=5.6 Score=29.06 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.2
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.++.-+.|.|||..+++++.
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHh
Confidence 456788999999988888765
No 311
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=51.55 E-value=18 Score=26.79 Aligned_cols=34 Identities=3% Similarity=-0.107 Sum_probs=24.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL 39 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~ 39 (169)
+.+.+++.|||.+++++...+.+.+ -.+-++.|-
T Consensus 157 v~GTD~~VGK~~ts~~L~~~l~~~G--~~a~~~~tg 190 (349)
T 2obn_A 157 TVGTDMAIGKMSTSLELHWAAKLRG--WRSKFLATG 190 (349)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHTT--CCEEEECCS
T ss_pred EcCCCccccceeHHHHHHHHHHhcC--CcEEEEecc
Confidence 4567899999999998887776665 245555554
No 312
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=51.44 E-value=9.6 Score=24.46 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=13.1
Q ss_pred ccccCCCCCcHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~ 20 (169)
.+|.--+|+|||..+=.+
T Consensus 6 i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 357778999999665443
No 313
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=51.43 E-value=19 Score=28.19 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=25.0
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCC--ceEEEecCc
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALE--PNLIVCPLS 40 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~--~~Liv~P~~ 40 (169)
.+++-.+|+|||...-+++..+......+ .++++=|+.
T Consensus 170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 46788999999988777776655443333 344444664
No 314
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=51.33 E-value=9.1 Score=25.57 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=13.4
Q ss_pred ccccCCCCCcHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~ 20 (169)
.+|.-.+|+|||..+=.+
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 456788999999766444
No 315
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.04 E-value=14 Score=33.54 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=29.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNN 44 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~q 44 (169)
.+|+-++|+|||..++.++...... .++++++.-.....|
T Consensus 735 VlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 735 VEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP 774 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCH
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHH
Confidence 4678899999999888887765543 357888776665554
No 316
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=50.91 E-value=46 Score=21.31 Aligned_cols=38 Identities=3% Similarity=-0.094 Sum_probs=25.1
Q ss_pred HHhCCCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCC
Q psy1090 25 IEEQALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 25 ~~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
......+++||+|+.. ......+.+... +..+..++|.
T Consensus 26 l~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~ 64 (172)
T 1t5i_A 26 LDVLEFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRG 64 (172)
T ss_dssp HHHSCCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTT
T ss_pred HHhCCCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECC
Confidence 3444567899999984 444555555554 5677788875
No 317
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=50.67 E-value=8.3 Score=25.09 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=13.0
Q ss_pred cccCCCCCcHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i 21 (169)
+|.--+|+|||..+=.+.
T Consensus 9 ~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 9 IVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 466679999997664443
No 318
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=50.28 E-value=5.1 Score=29.87 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=11.0
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
..+|+|||.++.+
T Consensus 92 GqTGSGKTyTM~G 104 (360)
T 1ry6_A 92 GQTGSGKTYTMLG 104 (360)
T ss_dssp CCTTSSHHHHHHB
T ss_pred CCCCCCCCEEEec
Confidence 5789999999865
No 319
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=50.20 E-value=9.8 Score=27.68 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=15.2
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|.-++|+|||..+=++...
T Consensus 54 ~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 54 VLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 467789999999766555443
No 320
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=50.02 E-value=11 Score=23.98 Aligned_cols=19 Identities=0% Similarity=-0.186 Sum_probs=13.4
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.-.+|+|||..+=.+.
T Consensus 5 I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3566789999997664443
No 321
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=49.70 E-value=7.9 Score=25.95 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=13.6
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.-.+|+|||.++=.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4566778999997765443
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.67 E-value=11 Score=24.29 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=13.1
Q ss_pred cccCCCCCcHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i 21 (169)
+|.-.+|+|||..+=.+.
T Consensus 8 ~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 8 IFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 566789999997664443
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=49.18 E-value=12 Score=24.30 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=12.7
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 7 ~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 7 FVLGGPGAGKGTQCARI 23 (196)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46678999999776444
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=49.00 E-value=9.4 Score=24.74 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=14.5
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
+|.--+|+|||..+=.+...+
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 456678999997765554443
No 325
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=48.75 E-value=21 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=15.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~ 25 (169)
.+.-++|+|||...-+++..+.
T Consensus 29 ~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 29 LVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEECSTTCSHHHHHHHHHHHHH
T ss_pred EEECCCCccHHHHHHHHHHhCC
Confidence 4677899999976655554443
No 326
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=48.70 E-value=9.9 Score=27.88 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.0
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
+++..+|+|||..+..++..
T Consensus 7 ~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 7 AIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEECCTTSCHHHHHHHHHHT
T ss_pred EEECCCcCCHHHHHHHHHHh
Confidence 57889999999888777543
No 327
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=48.70 E-value=95 Score=24.28 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=27.0
Q ss_pred CCCCceEEEecC-cchHHHHHHHHHhCC-CceEEEEeCC
Q psy1090 28 QALEPNLIVCPL-SVLNNWEAEFRKFAP-FVRTVKYYGN 64 (169)
Q Consensus 28 ~~~~~~Liv~P~-~~l~qW~~e~~~~~~-~~~~~~~~g~ 64 (169)
....++||+|+. .......+.+.+..+ +..+..++|.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~ 324 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 556789999998 445566677766544 6788888885
No 328
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=48.49 E-value=16 Score=33.15 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=29.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNN 44 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~q 44 (169)
.+++-++|+|||..++.++...... ..+++++.-.....+
T Consensus 386 ilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 386 VEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP 425 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHH
Confidence 3678899999999998887766543 357888877665544
No 329
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=48.47 E-value=11 Score=24.20 Aligned_cols=17 Identities=18% Similarity=-0.050 Sum_probs=12.8
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
++.--+|+|||..+-.+
T Consensus 6 ~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 6 LTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHH
Confidence 56778999999766444
No 330
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=48.45 E-value=22 Score=27.85 Aligned_cols=31 Identities=3% Similarity=0.005 Sum_probs=19.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEe
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVC 37 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~ 37 (169)
|.-..|+|||...-.+...+... .+.+++..
T Consensus 298 LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g 328 (503)
T 2yhs_A 298 MVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAA 328 (503)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHT--TCCEEEEC
T ss_pred EECCCcccHHHHHHHHHHHhhhc--CCeEEEec
Confidence 55678999997665554443322 36677763
No 331
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=48.45 E-value=9.9 Score=25.40 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=13.7
Q ss_pred CccccCCCCCcHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~ 20 (169)
-.+|.-.+|+|||..+=.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3467788999999766443
No 332
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=48.44 E-value=20 Score=26.66 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=16.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.+.-.+|+|||...-+++..+..
T Consensus 140 ~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 140 LVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhhcCc
Confidence 46778999999776666555443
No 333
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.44 E-value=12 Score=25.14 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=13.7
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.--+|+|||..+=.+.
T Consensus 7 I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3566789999997765443
No 334
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=48.42 E-value=7.4 Score=23.00 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=27.9
Q ss_pred ccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccC
Q psy1090 94 ISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVK 133 (169)
Q Consensus 94 ~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k 133 (169)
.....|.|++.+|..+.. +....++..++++||-.++.
T Consensus 54 l~~~GD~vII~aY~~~~~--~e~~~~~P~vV~vd~~N~i~ 91 (96)
T 1vc3_B 54 LVKPGDLVILVAYGVFDE--EEARNLKPTVVLVDERNRIL 91 (96)
T ss_dssp TCCTTCEEEEEEEEEECH--HHHTTCCCEEEEECTTCCEE
T ss_pred cCCCCCEEEEEECccCCH--HHHhcCCCEEEEECCCCCEE
Confidence 346677789999988653 34456788999999977654
No 335
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=48.20 E-value=8.5 Score=30.01 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=15.9
Q ss_pred CccccCCCCCcHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~ 22 (169)
|.+|.-++|+|||..+=++..
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 457889999999977655543
No 336
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=47.94 E-value=11 Score=27.52 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.0
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
+++-.+|+|||..+..++..
T Consensus 14 ~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 14 FLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHHh
Confidence 57889999999887776543
No 337
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=47.90 E-value=11 Score=27.60 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=15.7
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.+|.-.+|+|||..+..+..
T Consensus 8 i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46788999999987776654
No 338
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=47.79 E-value=4.6 Score=30.09 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 112 GQTGSGKTyTM~G 124 (359)
T 3nwn_A 112 GQTGAGKTYTMMG 124 (359)
T ss_dssp ESTTSSHHHHHTB
T ss_pred CCCCCCccEEeCC
Confidence 3689999999864
No 339
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=47.71 E-value=12 Score=23.64 Aligned_cols=13 Identities=23% Similarity=0.090 Sum_probs=9.9
Q ss_pred cccCCCCCcHHHH
Q psy1090 4 VIPDPTRYRKSGK 16 (169)
Q Consensus 4 iL~de~G~GKT~~ 16 (169)
++.-+.|+|||..
T Consensus 27 ~I~G~NGsGKSti 39 (149)
T 1f2t_A 27 LIIGQNGSGKSSL 39 (149)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3556899999954
No 340
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=47.58 E-value=5.9 Score=25.88 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=10.7
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
+|.-.+|+|||..+
T Consensus 13 ~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 13 LLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEECTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45668999999654
No 341
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=47.53 E-value=5.9 Score=30.10 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=11.0
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
..+|+|||.++.+
T Consensus 162 GQTGSGKTyTM~G 174 (410)
T 1v8k_A 162 GQTGSGKTHTMGG 174 (410)
T ss_dssp ESTTSSHHHHHHC
T ss_pred cCCCCCCCeEeec
Confidence 3689999999876
No 342
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=47.29 E-value=6.4 Score=29.17 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=10.6
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 92 GqTGSGKTyTM~G 104 (347)
T 1f9v_A 92 GQTGSGKTFTMLN 104 (347)
T ss_dssp CCTTSSHHHHHHS
T ss_pred CCCCCCCcEeccC
Confidence 4689999999863
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=47.23 E-value=10 Score=24.57 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=12.5
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 10 ~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 10 FVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46678999999766444
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=47.14 E-value=12 Score=24.41 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=13.1
Q ss_pred ccccCCCCCcHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~ 20 (169)
.+|.--+|+|||..+=.+
T Consensus 13 I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 357778999999665333
No 345
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=46.87 E-value=13 Score=24.58 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=15.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~ 25 (169)
+|.-.+|+|||..+=.+...+.
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999976655544443
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=46.39 E-value=11 Score=24.58 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=12.9
Q ss_pred cccCCCCCcHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i 21 (169)
+|.-.+|+|||..+=.+.
T Consensus 13 ~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 13 FVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 456679999997664443
No 347
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=46.26 E-value=7.8 Score=25.31 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=12.3
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 6 ~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 46788999999655333
No 348
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=46.09 E-value=10 Score=28.00 Aligned_cols=20 Identities=35% Similarity=0.257 Sum_probs=15.7
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
+++-.+|+|||..+..+...
T Consensus 11 ~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 11 VIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCcCcHHHHHHHHHHH
Confidence 57889999999877766544
No 349
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=45.98 E-value=9.5 Score=27.50 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=16.0
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
++.-++|+|||..++.++..
T Consensus 102 ~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 102 EFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56778999999888777654
No 350
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=45.49 E-value=16 Score=31.63 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=24.7
Q ss_pred cccEEEEeCCcccCCcccHHHHHHhccc---cccEEEEeccCCCC
Q psy1090 120 TWNCIIVDEGHSVKNKKSKLSIKLTALR---ATFKVLLTGWYYPN 161 (169)
Q Consensus 120 ~~~~vi~DEah~~k~~~~~~~~~~~~l~---~~~~~~lT~TP~~n 161 (169)
.|..+++||.|-. +...++.++.+. ....+++-|=|-|.
T Consensus 377 r~~~ilVDEfQDt---n~~Q~~il~~L~~~~~~~~l~~VGD~kQS 418 (1180)
T 1w36_B 377 RFPVAMIDEFQDT---DPQQYRIFRRIWHHQPETALLLIGDPKQA 418 (1180)
T ss_dssp HCSEEEECSGGGC---CHHHHHHHHHHHTTCTTCEEEEEECGGGC
T ss_pred CCCEEEEECCccC---CHHHHHHHHHHHcCCCCCeEEEEECCccc
Confidence 3778899998874 333455555442 34577787777654
No 351
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=45.38 E-value=20 Score=28.57 Aligned_cols=20 Identities=15% Similarity=-0.145 Sum_probs=15.2
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.+|.-+.|+|||..+-++..
T Consensus 63 vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 63 VLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHhc
Confidence 46778999999977765544
No 352
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=45.35 E-value=5.4 Score=29.70 Aligned_cols=13 Identities=15% Similarity=-0.061 Sum_probs=10.6
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 96 GqTGSGKTyTM~G 108 (359)
T 1x88_A 96 GQTGTGKTFTMEG 108 (359)
T ss_dssp ECTTSSHHHHHTB
T ss_pred CCCCCCCceEEec
Confidence 3689999998864
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=44.96 E-value=26 Score=23.18 Aligned_cols=19 Identities=16% Similarity=0.001 Sum_probs=12.8
Q ss_pred ccCCCCCcHHHHHHHHHHH
Q psy1090 5 IPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~ 23 (169)
|.-..|+|||..+-.+...
T Consensus 27 i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4567899999766444433
No 354
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=44.90 E-value=5.4 Score=29.32 Aligned_cols=13 Identities=15% Similarity=-0.038 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 88 GqTGSGKTyTm~G 100 (330)
T 2h58_A 88 GQTGAGKTYTMEG 100 (330)
T ss_dssp SSTTSSHHHHHTB
T ss_pred CCCCCCCcEEEec
Confidence 4689999998864
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=44.61 E-value=14 Score=24.37 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=13.6
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.--+|+|||..+=.+.
T Consensus 23 I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3566789999997764443
No 356
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=44.61 E-value=37 Score=26.75 Aligned_cols=33 Identities=6% Similarity=-0.017 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHHHHHhCCCCceEEEecCcchHH
Q psy1090 10 RYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLNN 44 (169)
Q Consensus 10 G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~q 44 (169)
|-|||.+++.+...+...+ +++|++.-...+..
T Consensus 71 GEGKSTtsinLA~alA~~G--kkVLLiLR~Psl~~ 103 (557)
T 3pzx_A 71 GEGKTTTSVGLTDALARLG--KRVMVCLREPSLGP 103 (557)
T ss_dssp CCCHHHHHHHHHHHHHHTT--CCEEEEECCCCSHH
T ss_pred CCCchhHHHHHHHHHHHcC--CeEEEEeCCCCccc
Confidence 8899999999987776544 67777755555554
No 357
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=44.35 E-value=89 Score=22.71 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=25.9
Q ss_pred HHHHHhCCCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCC
Q psy1090 22 CKIIEEQALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 22 ~~~~~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
..+......+++||+|+.. ......+.+.+. +..+..++|.
T Consensus 258 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~ 299 (412)
T 3fht_A 258 CNLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGE 299 (412)
T ss_dssp HHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTT
T ss_pred HHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCC
Confidence 3333444457899999984 445555556554 5567777775
No 358
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=44.32 E-value=14 Score=28.11 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=15.8
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
++.-++|+|||...-+++..+
T Consensus 171 ~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 171 LVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhhc
Confidence 477899999998776665543
No 359
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=44.31 E-value=5.6 Score=29.17 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=10.8
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 85 GqTGSGKTyTm~G 97 (325)
T 1bg2_A 85 GQTSSGKTHTMEG 97 (325)
T ss_dssp CSTTSSHHHHHTB
T ss_pred CCCCCCCceEecc
Confidence 4689999999865
No 360
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=44.23 E-value=5.6 Score=29.49 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=10.6
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 85 GqTGSGKTyTM~G 97 (349)
T 1t5c_A 85 GQTASGKTYTMMG 97 (349)
T ss_dssp ESTTSSHHHHHTB
T ss_pred cCCCCCCCeEEec
Confidence 3689999999864
No 361
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=44.22 E-value=1.1e+02 Score=23.68 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHH-hCCCCceEEEecC-cchHHHHHHHHHhCC-CceEEEEeCC
Q psy1090 15 GKVIAFFCKIIE-EQALEPNLIVCPL-SVLNNWEAEFRKFAP-FVRTVKYYGN 64 (169)
Q Consensus 15 ~~~i~~i~~~~~-~~~~~~~Liv~P~-~~l~qW~~e~~~~~~-~~~~~~~~g~ 64 (169)
...+..+..... ....+++||+|++ .......+.+.+..+ +..+..++|.
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~ 375 (563)
T 3i5x_A 323 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 375 (563)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTT
T ss_pred HHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCC
Confidence 334444433333 2556789999998 445556666666544 6788888884
No 362
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=44.08 E-value=14 Score=27.34 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=16.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
++.-.+|+|||...-+++..+..
T Consensus 127 ~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 127 LVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhcccC
Confidence 46778999999877666655543
No 363
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=44.01 E-value=8.8 Score=25.44 Aligned_cols=14 Identities=7% Similarity=-0.111 Sum_probs=10.8
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
.|.-.+|+|||..+
T Consensus 6 ~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 6 GLTGGIGSGKTTIA 19 (206)
T ss_dssp EEECSTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 46678999999654
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=43.98 E-value=15 Score=23.71 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=14.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
+|.--+|+|||..+=.+...+
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 456679999997765554433
No 365
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=43.98 E-value=9 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=12.4
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.--+|+|||..+=.+
T Consensus 8 ~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 8 VFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 46677999999766433
No 366
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=43.98 E-value=12 Score=31.18 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=19.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~ 27 (169)
|.+.++|.|||+.+.+++..+..+
T Consensus 39 I~gt~s~vGKT~vt~gL~r~l~~~ 62 (831)
T 4a0g_A 39 IWSANTSLGKTLVSTGIAASFLLQ 62 (831)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999998877665
No 367
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=43.89 E-value=5.9 Score=29.65 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=10.5
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
..+|+|||.++.+
T Consensus 87 GqTGSGKTyTM~G 99 (369)
T 3cob_A 87 GQTGSGKTFTIYG 99 (369)
T ss_dssp ECTTSSHHHHHTB
T ss_pred CCCCCCCeEeecC
Confidence 4689999998854
No 368
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=43.87 E-value=15 Score=30.03 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=19.2
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhC
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQ 28 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~ 28 (169)
.|+..|.|+|||..+=-++.++....
T Consensus 97 IiisGESGAGKTe~tK~i~~yla~~~ 122 (697)
T 1lkx_A 97 VIISGESGAGKTEASKKIMQFLTFVS 122 (697)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred EEecCCCCCCchhhHHHHHHHHHhhc
Confidence 46788999999987766666655443
No 369
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=43.85 E-value=7.6 Score=28.78 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=10.3
Q ss_pred CCCCCcHHHHHH
Q psy1090 7 DPTRYRKSGKVI 18 (169)
Q Consensus 7 de~G~GKT~~~i 18 (169)
-.+|+|||.++.
T Consensus 93 GqTGSGKTyTm~ 104 (349)
T 3t0q_A 93 GQTGSGKTYTML 104 (349)
T ss_dssp CSTTSSHHHHHH
T ss_pred CCCCCCCceEeC
Confidence 468999999985
No 370
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=43.74 E-value=13 Score=26.52 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=14.2
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|+-.+|+|||..+=.+.
T Consensus 36 ivl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp EEEECCTTSCTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3678899999997664443
No 371
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=43.71 E-value=7 Score=29.45 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=10.4
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 142 GQTGSGKTyTM~G 154 (387)
T 2heh_A 142 GQTGSGKTHTMGG 154 (387)
T ss_dssp SCTTSSHHHHHC-
T ss_pred cCCCCCCCeEecc
Confidence 4689999999876
No 372
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=43.70 E-value=16 Score=24.06 Aligned_cols=20 Identities=10% Similarity=-0.134 Sum_probs=14.2
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
++.--+|+|||..+=.+...
T Consensus 8 ~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 8 AFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 46678999999776555443
No 373
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=43.68 E-value=17 Score=26.80 Aligned_cols=20 Identities=5% Similarity=-0.160 Sum_probs=15.4
Q ss_pred cCCCCCcHHHHHHHHHHHHH
Q psy1090 6 PDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~ 25 (169)
.-+.|+|||..+-.++....
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHHHH
Confidence 78999999988777665443
No 374
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=43.30 E-value=8.4 Score=25.22 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=14.2
Q ss_pred cCCCCCcHHHHHHHHHHHHHH
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~ 26 (169)
.-+.|+|||..+-.++..+..
T Consensus 8 vG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EESCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhhh
Confidence 348899999766555555443
No 375
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=43.19 E-value=6 Score=29.37 Aligned_cols=13 Identities=15% Similarity=-0.084 Sum_probs=10.6
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 97 GqTGSGKTyTm~G 109 (350)
T 2vvg_A 97 GQTGAGKTWTMGG 109 (350)
T ss_dssp CSTTSSHHHHHTB
T ss_pred cCCCCCCCEEeec
Confidence 4689999998854
No 376
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=43.16 E-value=6 Score=29.42 Aligned_cols=13 Identities=23% Similarity=0.113 Sum_probs=10.8
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
..+|+|||.++.+
T Consensus 88 GqTGSGKTyTm~G 100 (355)
T 1goj_A 88 GQTGAGKSYTMMG 100 (355)
T ss_dssp CSTTSSHHHHHTB
T ss_pred CCCCCCcceEeec
Confidence 4689999999865
No 377
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=43.09 E-value=18 Score=29.93 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=17.5
Q ss_pred CccccCCCCCcHHHHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i~~~ 24 (169)
+.+|.-++|+|||..+=++....
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHH
T ss_pred eeEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999998776665443
No 378
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=43.05 E-value=15 Score=24.54 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=10.4
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
++.-+.|+|||...
T Consensus 27 ~I~G~NgsGKStil 40 (203)
T 3qks_A 27 LIIGQNGSGKSSLL 40 (203)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEEcCCCCCHHHHH
Confidence 45668999999543
No 379
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=42.86 E-value=6.1 Score=29.60 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 108 GqTGSGKTyTm~G 120 (373)
T 2wbe_C 108 GQTGTGKTHTMVG 120 (373)
T ss_dssp CSTTSSHHHHHTB
T ss_pred cCCCCCcceeccc
Confidence 4689999998865
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=42.83 E-value=14 Score=24.85 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=13.6
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.--+|+|||.++=.+.
T Consensus 8 I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIK 26 (222)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3566779999997765443
No 381
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=42.78 E-value=1.2e+02 Score=23.60 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=26.2
Q ss_pred CCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCH
Q psy1090 28 QALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNA 65 (169)
Q Consensus 28 ~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~ 65 (169)
...+++||.|++ .....+.+.+.+. +..+..++|..
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~--g~~~~~~h~~l 270 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGL 270 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTS
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHC--CCCEEEecCCC
Confidence 345689999997 5566777777765 56788888853
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.65 E-value=20 Score=23.31 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=14.7
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
+|.--+|+|||..+=.+...+
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 455678999998776555444
No 383
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=42.61 E-value=17 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=14.4
Q ss_pred CCcccc--CCCCCcHHHHHHHHHHHH
Q psy1090 1 MDTVIP--DPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 1 ~g~iL~--de~G~GKT~~~i~~i~~~ 24 (169)
||.+++ ---|+|||.++=.+...+
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 454433 457999998875554444
No 384
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=42.58 E-value=6.3 Score=29.28 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 113 GqTGSGKTyTm~G 125 (355)
T 3lre_A 113 GATGAGKTHTMLG 125 (355)
T ss_dssp CCTTSSHHHHHTB
T ss_pred CCCCCCceeeecc
Confidence 5789999999854
No 385
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=42.54 E-value=15 Score=27.26 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=16.7
Q ss_pred ccccEEEEeCCcccCCcccH--HHHHHhcc
Q psy1090 119 ITWNCIIVDEGHSVKNKKSK--LSIKLTAL 146 (169)
Q Consensus 119 ~~~~~vi~DEah~~k~~~~~--~~~~~~~l 146 (169)
.+.+++++||...--.+.+. ....+..+
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l 331 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKEL 331 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGG
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 36789999998764443332 23344455
No 386
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=42.53 E-value=17 Score=23.22 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=12.3
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 12 ~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEV 28 (175)
T ss_dssp EEECSTTSCHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 46778999999665433
No 387
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=42.50 E-value=17 Score=23.98 Aligned_cols=17 Identities=12% Similarity=0.002 Sum_probs=12.3
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 33 ~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 33 VVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46678999999655443
No 388
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=42.49 E-value=15 Score=24.78 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=13.7
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.--+|+|||.++=.+.
T Consensus 3 I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3567789999997764443
No 389
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=42.42 E-value=8.1 Score=22.89 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=28.2
Q ss_pred cccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccC
Q psy1090 93 QISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVK 133 (169)
Q Consensus 93 ~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k 133 (169)
......|.|++.+|..+.. +....++..++++||--++.
T Consensus 51 rl~~~GD~vII~aY~~~~~--~e~~~~~P~vV~vd~~N~i~ 89 (97)
T 1uhe_A 51 RKVAIGDVVIILAYASMNE--DEINAHKPSIVLVDEKNEIL 89 (97)
T ss_dssp GGCCTTCEEEEEEEEEECH--HHHHHCCCEEEEECTTSCEE
T ss_pred ccCCCCCEEEEEECccCCH--HHHhcCCCEEEEECCCCCEE
Confidence 3346677789999988653 33346788899999987764
No 390
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=42.29 E-value=6.3 Score=29.57 Aligned_cols=13 Identities=15% Similarity=-0.061 Sum_probs=10.8
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
..+|+|||.++.+
T Consensus 123 GqTGSGKTyTM~G 135 (376)
T 2rep_A 123 GQTGSGKTFTMEG 135 (376)
T ss_dssp CSTTSSHHHHHTB
T ss_pred CCCCCCCceEeec
Confidence 4689999999865
No 391
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=42.23 E-value=13 Score=28.31 Aligned_cols=21 Identities=33% Similarity=0.222 Sum_probs=16.2
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
+++..+|+|||..+..++..+
T Consensus 6 ~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 6 VIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEECSSSSHHHHHHHHHHHH
T ss_pred EEECcchhhHHHHHHHHHHHC
Confidence 467789999998887776543
No 392
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=42.23 E-value=14 Score=24.13 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=12.2
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 16 ~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 16 FIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 45667999999766444
No 393
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=42.05 E-value=9.9 Score=25.05 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=11.8
Q ss_pred cccCCCCCcHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIA 19 (169)
Q Consensus 4 iL~de~G~GKT~~~i~ 19 (169)
+|.-.+|+|||..+=.
T Consensus 10 ~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 10 VLSGPSGVGKGTVRKR 25 (207)
T ss_dssp EEECSTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4667899999965533
No 394
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=42.03 E-value=15 Score=30.32 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=17.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.++..|.|+|||..+=-++.++..
T Consensus 175 IiisGESGAGKTe~tK~i~~yla~ 198 (770)
T 1w9i_A 175 LLITGESGAGKTENTKKVIQYLAS 198 (770)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcchHHHHHHHHHHHH
Confidence 467889999999876555555543
No 395
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=41.94 E-value=16 Score=24.18 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=13.1
Q ss_pred cccCCCCCcHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i 21 (169)
+|.-.+|+|||..+=.+.
T Consensus 16 ~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 16 VVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567889999996654443
No 396
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=41.90 E-value=6.4 Score=29.47 Aligned_cols=13 Identities=15% Similarity=-0.031 Sum_probs=10.6
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 109 GqTGSGKTyTM~G 121 (372)
T 3b6u_A 109 GQTGTGKTYTMEG 121 (372)
T ss_dssp ESTTSSHHHHHTB
T ss_pred cCCCCCCCEeEec
Confidence 3689999999855
No 397
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=41.85 E-value=6.6 Score=29.17 Aligned_cols=13 Identities=23% Similarity=0.120 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 100 GqTGSGKTyTm~G 112 (354)
T 3gbj_A 100 GQTGSGKSYTMMG 112 (354)
T ss_dssp ECTTSSHHHHHTB
T ss_pred CCCCCCCceEEec
Confidence 4689999999854
No 398
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=41.74 E-value=6.6 Score=29.59 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 106 GqTGSGKTyTM~G 118 (388)
T 3bfn_A 106 GPTGAGKTHTMLG 118 (388)
T ss_dssp SCTTSSHHHHHTB
T ss_pred cCCCCCCCeEeec
Confidence 4689999999854
No 399
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=41.72 E-value=6.5 Score=29.36 Aligned_cols=13 Identities=23% Similarity=0.113 Sum_probs=10.6
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 97 GqTGSGKTyTm~G 109 (366)
T 2zfi_A 97 GQTGAGKSYTMMG 109 (366)
T ss_dssp CSTTSSHHHHHTB
T ss_pred CCCCCCCceEeeC
Confidence 4689999998864
No 400
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.69 E-value=11 Score=28.56 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=10.3
Q ss_pred CCCCCcHHHHHH
Q psy1090 7 DPTRYRKSGKVI 18 (169)
Q Consensus 7 de~G~GKT~~~i 18 (169)
..+|+|||.+++
T Consensus 148 GqTGSGKTyTM~ 159 (403)
T 4etp_A 148 GQTGSGKTFTML 159 (403)
T ss_dssp SCTTSSHHHHHH
T ss_pred CCCCCCCceEeC
Confidence 468999999985
No 401
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=41.68 E-value=18 Score=24.75 Aligned_cols=18 Identities=6% Similarity=-0.023 Sum_probs=13.4
Q ss_pred cccCCCCCcHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i 21 (169)
+|.-.+|+||+.++--+.
T Consensus 33 ~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 33 FVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEECCTTCCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 466789999998775443
No 402
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=41.61 E-value=8.2 Score=30.79 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=12.9
Q ss_pred CccccCCCCCcHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKV 17 (169)
Q Consensus 2 g~iL~de~G~GKT~~~ 17 (169)
+.+|..++|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 4678889999999655
No 403
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=41.52 E-value=15 Score=29.99 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=16.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~ 24 (169)
.+|.-++|+|||..+-++....
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4678899999998876665443
No 404
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=41.50 E-value=15 Score=23.43 Aligned_cols=15 Identities=20% Similarity=0.053 Sum_probs=11.5
Q ss_pred ccccCCCCCcHHHHH
Q psy1090 3 TVIPDPTRYRKSGKV 17 (169)
Q Consensus 3 ~iL~de~G~GKT~~~ 17 (169)
.+|.-.+|+|||..+
T Consensus 7 i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 7 IFLVGPMGAGKSTIG 21 (173)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 356778999999654
No 405
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=41.33 E-value=13 Score=24.96 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=13.0
Q ss_pred cccCCCCCcHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i 21 (169)
+|.--+|+|||.++=.+.
T Consensus 9 ~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 9 ILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 456678999997765443
No 406
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=41.25 E-value=16 Score=30.29 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=17.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.|+.-|.|+|||..+=-++.++..
T Consensus 143 IiiSGESGAGKTe~tK~i~~yla~ 166 (784)
T 2v26_A 143 IIVSGESGAGKTENTKFVLRYLTE 166 (784)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCceehHHHHHHHHHh
Confidence 467889999999776655555543
No 407
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=41.23 E-value=10 Score=27.57 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=13.3
Q ss_pred CCcHHHHHHHHHHHHH
Q psy1090 10 RYRKSGKVIAFFCKII 25 (169)
Q Consensus 10 G~GKT~~~i~~i~~~~ 25 (169)
|+|||-.++.++..+.
T Consensus 48 GTGKTP~vi~L~~~L~ 63 (315)
T 4ehx_A 48 GSGKTSFVMYLADLLK 63 (315)
T ss_dssp CCSHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHh
Confidence 8999999888877654
No 408
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=41.17 E-value=6.7 Score=29.28 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=10.6
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
..+|+|||.++.+
T Consensus 92 GqTGSGKTyTm~G 104 (365)
T 2y65_A 92 GQTSSGKTHTMEG 104 (365)
T ss_dssp CSTTSSHHHHHTB
T ss_pred cCCCCCCceEEec
Confidence 4689999999854
No 409
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=40.93 E-value=97 Score=22.15 Aligned_cols=37 Identities=3% Similarity=-0.030 Sum_probs=24.0
Q ss_pred HhCCCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCC
Q psy1090 26 EEQALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 26 ~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
.....+++||+|+.- ......+.+... +..+..++|.
T Consensus 24 ~~~~~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~ 61 (300)
T 3i32_A 24 YVASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGD 61 (300)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSC
T ss_pred HhcCCCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 333467999999984 444444555443 5677788885
No 410
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=40.81 E-value=16 Score=24.39 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=12.7
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+-.+
T Consensus 12 ~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 12 VLSGPSGVGKGTVREAV 28 (208)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHH
Confidence 56788999999665444
No 411
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=40.72 E-value=73 Score=20.67 Aligned_cols=35 Identities=9% Similarity=-0.061 Sum_probs=20.8
Q ss_pred CCCceEEEecCcc-hHHHHHHHHHhCCCceEEEEeCCH
Q psy1090 29 ALEPNLIVCPLSV-LNNWEAEFRKFAPFVRTVKYYGNA 65 (169)
Q Consensus 29 ~~~~~Liv~P~~~-l~qW~~e~~~~~~~~~~~~~~g~~ 65 (169)
..+++||+|+..- .....+.+... +..+..++|..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~ 80 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDR 80 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC---
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCC
Confidence 4678999999843 44444445443 56777777743
No 412
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=40.49 E-value=18 Score=23.45 Aligned_cols=17 Identities=6% Similarity=-0.037 Sum_probs=12.4
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-..|+|||..+=.+
T Consensus 9 ~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46788999999655443
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=40.44 E-value=25 Score=23.01 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=14.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHH
Q psy1090 5 IPDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~ 25 (169)
+.-..|+|||...-.++..+.
T Consensus 11 i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 11 FAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp EECCTTSCHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHhcc
Confidence 455789999977666665543
No 414
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=40.43 E-value=7.1 Score=29.98 Aligned_cols=13 Identities=23% Similarity=0.120 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++++
T Consensus 144 GQTGSGKTyTM~G 156 (443)
T 2owm_A 144 GQTGSGKSYTMMG 156 (443)
T ss_dssp SSTTSSHHHHHTC
T ss_pred CCCCCCCCEEeec
Confidence 3689999999864
No 415
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=40.33 E-value=28 Score=25.93 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=11.9
Q ss_pred ccccCCCCCcHHHHH
Q psy1090 3 TVIPDPTRYRKSGKV 17 (169)
Q Consensus 3 ~iL~de~G~GKT~~~ 17 (169)
.++..|+|+||+..+
T Consensus 163 vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 163 VLITGESGVGKEVVA 177 (387)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred eEEecCCCcCHHHHH
Confidence 467889999999654
No 416
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=40.16 E-value=8.9 Score=22.92 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=27.4
Q ss_pred cccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccC
Q psy1090 93 QISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVK 133 (169)
Q Consensus 93 ~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k 133 (169)
+.....|.|++.+|..+.. +....++..++++||-.++.
T Consensus 52 rl~~~GD~vII~aY~~~~~--~e~~~~~P~vv~vd~~N~i~ 90 (102)
T 3plx_B 52 RLAEVGDKVIIMSYADFNE--EEAKTFKPKVVFVDENNTAT 90 (102)
T ss_dssp GGCCTTCEEEEEEEEEEEH--HHHHHCCCEEEEECTTSCEE
T ss_pred hccCCCCEEEEEEcccCCH--HHHhcCCCEEEEECCCCcEE
Confidence 3346777789999987654 33345788899999966543
No 417
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=40.12 E-value=7.1 Score=29.06 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=10.6
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 111 GqTGSGKTyTM~G 123 (358)
T 2nr8_A 111 GQTGAGKTYTMMG 123 (358)
T ss_dssp ESTTSSHHHHHTB
T ss_pred CCCCCCCceEecc
Confidence 4689999999854
No 418
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=39.90 E-value=16 Score=31.41 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=18.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~ 27 (169)
.|+..|.|+|||..+=-++.++...
T Consensus 147 IiiSGESGAGKTestK~im~yLa~~ 171 (1052)
T 4anj_A 147 IIVSGESGAGKTENTKFVLRYLTES 171 (1052)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Confidence 5788999999998776666655543
No 419
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=39.87 E-value=30 Score=25.25 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=10.4
Q ss_pred ccCCCCCcHHHHH
Q psy1090 5 IPDPTRYRKSGKV 17 (169)
Q Consensus 5 L~de~G~GKT~~~ 17 (169)
|+-..|+|||..+
T Consensus 97 I~GpsGSGKSTl~ 109 (321)
T 3tqc_A 97 IAGSVAVGKSTTS 109 (321)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 5678999999665
No 420
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=39.75 E-value=32 Score=22.86 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=13.9
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy1090 5 IPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~ 24 (169)
+.-..|+|||.....++...
T Consensus 43 ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 43 FMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 34458999997776666543
No 421
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=39.32 E-value=11 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.051 Sum_probs=17.4
Q ss_pred cccHHHHHHhcc---ccccEEEEeccCCCCCchh
Q psy1090 135 KKSKLSIKLTAL---RATFKVLLTGWYYPNKWSK 165 (169)
Q Consensus 135 ~~~~~~~~~~~l---~~~~~~~lT~TP~~n~~~e 165 (169)
.+++.++.++.. +++-.++.+-.|-..+..|
T Consensus 288 RdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~E 321 (344)
T 3dc4_A 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSE 321 (344)
T ss_dssp GGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHH
T ss_pred cccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHH
Confidence 345666666532 4455566666676655544
No 422
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=39.23 E-value=18 Score=30.05 Aligned_cols=26 Identities=4% Similarity=-0.079 Sum_probs=19.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHhC
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEEQ 28 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~~ 28 (169)
.++..|.|+|||..+=-++.++..-.
T Consensus 159 IiisGESGAGKTe~tK~i~~yla~~~ 184 (795)
T 1w7j_A 159 IIVSGESGAGKTVSAKYAMRYFATVS 184 (795)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCcchHHHHHHHHHHhhc
Confidence 46789999999987766666655433
No 423
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=39.05 E-value=9.5 Score=25.03 Aligned_cols=14 Identities=21% Similarity=-0.040 Sum_probs=10.7
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
.|.-.+|+|||..+
T Consensus 12 ~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 12 GITGNIGSGKSTVA 25 (203)
T ss_dssp EEEECTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45668999999655
No 424
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=38.97 E-value=20 Score=23.84 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=14.6
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
++.-.+|+|||..+=.+...+
T Consensus 29 ~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 29 WLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 456679999997765554444
No 425
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=38.90 E-value=18 Score=30.21 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=18.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~ 27 (169)
.++..|.|+|||..+=-++.++..-
T Consensus 172 IiiSGESGAGKTe~tK~i~~yla~~ 196 (837)
T 1kk8_A 172 CLITGESGAGKTENTKKVIMYLAKV 196 (837)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCchhhHHHHHHHHHHh
Confidence 4678899999998776666665543
No 426
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=38.74 E-value=17 Score=28.48 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=15.3
Q ss_pred ccccCCCCCcHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~ 23 (169)
.+|.-++|+|||..+-++...
T Consensus 111 vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 457789999999776555443
No 427
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=38.64 E-value=86 Score=21.42 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=32.8
Q ss_pred ccccCC-CCCcHHHHHHHHHHHHHHhCCC-CceEEEecCcchHHHHHHHHHhCCCceEE
Q psy1090 3 TVIPDP-TRYRKSGKVIAFFCKIIEEQAL-EPNLIVCPLSVLNNWEAEFRKFAPFVRTV 59 (169)
Q Consensus 3 ~iL~de-~G~GKT~~~i~~i~~~~~~~~~-~~~Liv~P~~~l~qW~~e~~~~~~~~~~~ 59 (169)
++|.|+ ..+|.|. ++.+..+...+.. +.+.++|+-.. .+=.+.+.+.+|+.+++
T Consensus 132 VilvD~~laTG~T~--~~ai~~L~~~G~pe~~I~~~~~vaa-~egl~~l~~~~P~v~i~ 187 (217)
T 3dmp_A 132 FILCDPMVATGYSA--AHAIDVLKRRGVPGERLMFLALVAA-PEGVQVFQDAHPDVKLY 187 (217)
T ss_dssp EEEECSEESSSHHH--HHHHHHHHTTTCCGGGEEEECSEEC-HHHHHHHHHHCTTCEEE
T ss_pred EEEEcCcccccHHH--HHHHHHHHHcCCCcCeEEEEEEEeC-HHHHHHHHHHCCCCEEE
Confidence 466676 5689994 4466666666643 55666665432 33345666667876644
No 428
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=38.59 E-value=22 Score=22.86 Aligned_cols=20 Identities=10% Similarity=-0.094 Sum_probs=13.7
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
+|.-.+|+|||..+=.+...
T Consensus 9 ~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 9 WLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45678999999766554443
No 429
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=38.44 E-value=19 Score=29.87 Aligned_cols=24 Identities=8% Similarity=-0.045 Sum_probs=17.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.|+.-|.|+|||..+=-++.++..
T Consensus 174 IiiSGESGAGKTe~tK~im~yla~ 197 (783)
T 4db1_A 174 ILITGESGAGKTVNTKRVIQYFAV 197 (783)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCchHHHHHHHhhhh
Confidence 467889999999876666665544
No 430
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=38.24 E-value=24 Score=26.21 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=23.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL 39 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~ 39 (169)
.+.+++.|||.++.++...+.+.+. .+-++.|.
T Consensus 175 ~GTDt~vGKt~t~~~L~~~l~~~G~--~v~~v~tg 207 (350)
T 2g0t_A 175 FGTDCVVGKRTTAVQLWERALEKGI--KAGFLATG 207 (350)
T ss_dssp EESSSSSSHHHHHHHHHHHHHHTTC--CEEEEECS
T ss_pred ecCCCCccCccHHHHHHHHHHhcCC--eEEEEccC
Confidence 4567899999999988777766652 44445554
No 431
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=38.19 E-value=13 Score=24.96 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=10.9
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
.|.-.+|+|||..+
T Consensus 8 ~i~G~~GSGKST~~ 21 (218)
T 1vht_A 8 ALTGGIGSGKSTVA 21 (218)
T ss_dssp EEECCTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 46678999999654
No 432
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=38.08 E-value=13 Score=23.54 Aligned_cols=41 Identities=5% Similarity=0.042 Sum_probs=29.8
Q ss_pred ccccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCC
Q psy1090 92 KQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKN 134 (169)
Q Consensus 92 ~~~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~ 134 (169)
.......|.|+|.+|..+.. +....++..++++||--++..
T Consensus 93 Arl~~~GD~VII~sYa~~~~--~E~~~~~P~VV~vd~~N~i~~ 133 (143)
T 1pqh_A 93 AHCASVGDIVIIASFVTMPD--EEARTWRPNVAYFEGDNEMKR 133 (143)
T ss_dssp GGTCCTTCEEEEEEEEEEEH--HHHTTCCCEEEEEETTTEECC
T ss_pred HccCCCCCEEEEEECccCCH--HHhccCCCeEEEECCCCCEEE
Confidence 33446777789999988653 344567889999999887653
No 433
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=38.08 E-value=37 Score=24.73 Aligned_cols=20 Identities=25% Similarity=0.074 Sum_probs=13.8
Q ss_pred cCCCCCcHHHHHHHHHHHHH
Q psy1090 6 PDPTRYRKSGKVIAFFCKII 25 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~ 25 (169)
.-..|.|||...-.++..+.
T Consensus 62 ~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 62 TGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp EECTTSCHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHH
Confidence 34899999977666554443
No 434
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=37.53 E-value=13 Score=23.93 Aligned_cols=14 Identities=21% Similarity=0.069 Sum_probs=10.7
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
.|.-+.|+|||..+
T Consensus 13 ~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 13 VLIGSSGSGKSTFA 26 (171)
T ss_dssp EEECCTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 35678999999554
No 435
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=37.47 E-value=11 Score=29.44 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=14.7
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~ 22 (169)
.++.-++|+|||.+.-+++.
T Consensus 263 i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 45778999999977655543
No 436
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=37.34 E-value=21 Score=23.46 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=12.2
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.-.+|+|||..+=.+
T Consensus 19 ~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 19 FVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 45678999999765333
No 437
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=37.15 E-value=23 Score=23.15 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=12.5
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
.|.-.+|+|||..+=.+
T Consensus 6 ~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 6 TIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35678999999765444
No 438
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=36.97 E-value=18 Score=23.86 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=14.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
+|.--+|+|||..+=.+...+
T Consensus 14 ~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 14 VFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 455678999997775554433
No 439
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.97 E-value=8.2 Score=29.34 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=10.7
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
..+|+|||.++.+
T Consensus 146 GqTGSGKTyTM~G 158 (412)
T 3u06_A 146 GQTGSGKTYTMDG 158 (412)
T ss_dssp SSTTSSHHHHHTE
T ss_pred cCCCCCCeeEecC
Confidence 4689999999854
No 440
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=36.90 E-value=1.2e+02 Score=22.01 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=25.8
Q ss_pred HHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCC
Q psy1090 23 KIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 23 ~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
.+......+++||+|+. ..+....+.+... +..+..++|.
T Consensus 251 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~ 291 (400)
T 1s2m_A 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHAR 291 (400)
T ss_dssp HHHHHSCCSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTT
T ss_pred HHHhhcCCCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCC
Confidence 33444556789999997 4455555666554 4567777774
No 441
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=36.89 E-value=22 Score=26.46 Aligned_cols=19 Identities=11% Similarity=0.030 Sum_probs=14.1
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.-.+|+|||..+-++.
T Consensus 27 i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 3577889999997765443
No 442
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=36.85 E-value=23 Score=24.34 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=13.9
Q ss_pred ccccCCCCCcHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i 21 (169)
.+|.-.+|+|||..+=.+.
T Consensus 32 I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3567789999997765443
No 443
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=36.67 E-value=13 Score=27.39 Aligned_cols=13 Identities=15% Similarity=-0.089 Sum_probs=10.5
Q ss_pred CCCCCcHHHHHHH
Q psy1090 7 DPTRYRKSGKVIA 19 (169)
Q Consensus 7 de~G~GKT~~~i~ 19 (169)
-.+|+|||.++.+
T Consensus 91 GqTGSGKTyTm~G 103 (344)
T 4a14_A 91 GQTGSGKTYTMGE 103 (344)
T ss_dssp SSTTSSHHHHHCC
T ss_pred cccCCCceEeecc
Confidence 4689999998743
No 444
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=36.49 E-value=11 Score=26.05 Aligned_cols=18 Identities=6% Similarity=-0.171 Sum_probs=13.2
Q ss_pred cccCCCCCcHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i 21 (169)
+|.-.+|+|||..+-.+.
T Consensus 36 ~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 36 LLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp EEESCGGGTTHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567789999997664443
No 445
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=36.40 E-value=23 Score=23.16 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=14.9
Q ss_pred ccccEEEEeCCcccCCcccHHHHHH
Q psy1090 119 ITWNCIIVDEGHSVKNKKSKLSIKL 143 (169)
Q Consensus 119 ~~~~~vi~DEah~~k~~~~~~~~~~ 143 (169)
.+.+++++||.+-..+-+....+.+
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHH
Confidence 4678999999654433333333333
No 446
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=36.13 E-value=38 Score=24.41 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=21.6
Q ss_pred cccEEEEeCCcc-cCCcccH-HHHHHhccccccEEEEecc
Q psy1090 120 TWNCIIVDEGHS-VKNKKSK-LSIKLTALRATFKVLLTGW 157 (169)
Q Consensus 120 ~~~~vi~DEah~-~k~~~~~-~~~~~~~l~~~~~~~lT~T 157 (169)
+..++|+||+|. +...... ..+.+........+++.+|
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEES
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 467999999998 7432222 2233333344555665554
No 447
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=35.69 E-value=13 Score=23.83 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=8.7
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.--+|+|||..+=.+
T Consensus 9 ~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 9 WINGPFGVGKTHTAHTL 25 (183)
T ss_dssp EEECCC----CHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 56778999999766443
No 448
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.51 E-value=22 Score=30.69 Aligned_cols=25 Identities=4% Similarity=-0.085 Sum_probs=18.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~ 27 (169)
.|+..|.|+|||..+=-++.++..-
T Consensus 159 IiisGESGAGKTe~~K~i~~yla~~ 183 (1080)
T 2dfs_A 159 IIVSGESGAGKTVSAKYAMRYFATV 183 (1080)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCccchHHHHHHHHHhh
Confidence 4678999999998876666666543
No 449
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=35.45 E-value=16 Score=28.36 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=9.6
Q ss_pred ccccEEEEeCC
Q psy1090 119 ITWNCIIVDEG 129 (169)
Q Consensus 119 ~~~~~vi~DEa 129 (169)
..+.++|+|||
T Consensus 413 ~~~rlvvlDEA 423 (483)
T 3euj_A 413 LPCRLLFLDQA 423 (483)
T ss_dssp CCCCEEEESSG
T ss_pred CceeEEEEecc
Confidence 36889999999
No 450
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=35.30 E-value=19 Score=27.11 Aligned_cols=38 Identities=11% Similarity=-0.129 Sum_probs=22.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHh---C-CCCceEEEecCcc
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKIIEE---Q-ALEPNLIVCPLSV 41 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~~~~---~-~~~~~Liv~P~~~ 41 (169)
.|.-+.|+|||..+..++...... + ..++++++.-...
T Consensus 182 ~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 182 ELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred EEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 456789999997776554332211 1 2356777776543
No 451
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=35.02 E-value=21 Score=30.51 Aligned_cols=25 Identities=4% Similarity=-0.045 Sum_probs=18.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~ 27 (169)
.|+..|.|+|||..+=-++.++...
T Consensus 149 IiisGESGAGKTe~~K~i~~yla~~ 173 (995)
T 2ycu_A 149 ILCTGESGAGKTENTKKVIQYLAHV 173 (995)
T ss_dssp EEEECBTTSSHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Confidence 4678899999998776666665543
No 452
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=34.96 E-value=17 Score=24.32 Aligned_cols=19 Identities=5% Similarity=-0.160 Sum_probs=13.3
Q ss_pred cccCCCCCcHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~ 22 (169)
.|.-+.|+|||..+..++.
T Consensus 29 ~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 29 EVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3556899999976655543
No 453
>1suy_C CIIABD, circadian clock protein KAIC; X-class four helix bundle, protein-peptide complex, circadia protein; NMR {Thermosynechococcus elongatus} PDB: 1sv1_C
Probab=34.96 E-value=9.9 Score=16.92 Aligned_cols=13 Identities=8% Similarity=0.021 Sum_probs=9.2
Q ss_pred EEeccCCCCCchh
Q psy1090 153 LLTGWYYPNKWSK 165 (169)
Q Consensus 153 ~lT~TP~~n~~~e 165 (169)
++||||.+-++.|
T Consensus 5 iisgtptrisvde 17 (34)
T 1suy_C 5 IISGTPTRISVDE 17 (34)
T ss_dssp CCCCCSSCSCCCT
T ss_pred cccCCCceEeech
Confidence 3689998766654
No 454
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=34.59 E-value=26 Score=24.46 Aligned_cols=18 Identities=6% Similarity=-0.186 Sum_probs=13.2
Q ss_pred ccccCCCCCcHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~ 20 (169)
.+|.-.+|+|||..+=.+
T Consensus 51 i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 357788999999665444
No 455
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=34.54 E-value=12 Score=24.62 Aligned_cols=14 Identities=14% Similarity=-0.035 Sum_probs=10.4
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
.|.-.+|+|||..+
T Consensus 5 ~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 5 GLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEECTTSSHHHHH
T ss_pred EEECCCCcCHHHHH
Confidence 45567999999554
No 456
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=34.47 E-value=30 Score=24.94 Aligned_cols=13 Identities=8% Similarity=-0.074 Sum_probs=9.3
Q ss_pred cccCCCCCcHHHH
Q psy1090 4 VIPDPTRYRKSGK 16 (169)
Q Consensus 4 iL~de~G~GKT~~ 16 (169)
+|.-..|+|||..
T Consensus 8 ~i~G~~GaGKTTl 20 (318)
T 1nij_A 8 LLTGFLGAGKTTL 20 (318)
T ss_dssp EEEESSSSSCHHH
T ss_pred EEEecCCCCHHHH
Confidence 3455789999944
No 457
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=34.45 E-value=20 Score=24.20 Aligned_cols=17 Identities=18% Similarity=0.003 Sum_probs=12.4
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
+|.--+|+|||..+=.+
T Consensus 11 ~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 11 VIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 56678999999766443
No 458
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=34.01 E-value=37 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=13.0
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy1090 5 IPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~ 24 (169)
+..+.|+|||..+-.++...
T Consensus 180 Ifg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 180 IVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEECTTCCHHHHHHHHHHHH
T ss_pred EecCCCCChhHHHHHHHHHH
Confidence 44467999998775444433
No 459
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=33.61 E-value=20 Score=30.66 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=17.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~ 26 (169)
.|+..|.|+|||..+=-++.++..
T Consensus 175 IiisGESGAGKTe~~K~i~~yla~ 198 (1010)
T 1g8x_A 175 LLITGESGAGKTENTKKVIQYLAS 198 (1010)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcchHHHHHHHHHHH
Confidence 467789999999876555555543
No 460
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=33.48 E-value=22 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=14.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCKI 24 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~~ 24 (169)
+|.--+|+|||..+=.+...+
T Consensus 13 ~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 13 VLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 455678999997775554443
No 461
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=33.45 E-value=16 Score=23.88 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=10.7
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
.|.-..|+|||..+
T Consensus 5 ~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 5 VISGPSGTGKSTLL 18 (186)
T ss_dssp EEESSSSSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45678999999654
No 462
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=33.18 E-value=27 Score=22.80 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=11.6
Q ss_pred cccCCCCCcHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIA 19 (169)
Q Consensus 4 iL~de~G~GKT~~~i~ 19 (169)
.|.-..|+|||..+=.
T Consensus 11 ~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 11 IISAPSGAGKTSLVRA 26 (205)
T ss_dssp EEECCTTSCHHHHHHH
T ss_pred EEECcCCCCHHHHHHH
Confidence 4667899999965433
No 463
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=33.12 E-value=1.4e+02 Score=21.73 Aligned_cols=37 Identities=11% Similarity=0.233 Sum_probs=23.9
Q ss_pred HhCCCCceEEEecCc-chHHHHHHHHHhCCCceEEEEeCC
Q psy1090 26 EEQALEPNLIVCPLS-VLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 26 ~~~~~~~~Liv~P~~-~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
.....+++||+|+.. .+....+.+.+. +..+..++|.
T Consensus 272 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~ 309 (410)
T 2j0s_A 272 DTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGD 309 (410)
T ss_dssp HHHTSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTT
T ss_pred HhcCCCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCC
Confidence 333456899999974 445555556554 5667777875
No 464
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=32.95 E-value=20 Score=29.77 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=15.0
Q ss_pred CccccCCCCCcHHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~i 21 (169)
+.+|.-++|+|||..+-++.
T Consensus 240 ~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 35778899999997665543
No 465
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.60 E-value=31 Score=22.98 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=11.3
Q ss_pred cccCCCCCcHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVI 18 (169)
Q Consensus 4 iL~de~G~GKT~~~i 18 (169)
.|.-.+|+|||..+=
T Consensus 9 ~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 9 TIDGPSGAGKGTLCK 23 (227)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 466789999996553
No 466
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=32.12 E-value=20 Score=23.07 Aligned_cols=14 Identities=21% Similarity=-0.005 Sum_probs=10.6
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
+|.-+.|+|||...
T Consensus 30 ~i~G~NGsGKStll 43 (182)
T 3kta_A 30 AIVGANGSGKSNIG 43 (182)
T ss_dssp EEEECTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45678999999553
No 467
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=32.09 E-value=30 Score=22.98 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=11.5
Q ss_pred ccCCCCCcHHHHHHHH
Q psy1090 5 IPDPTRYRKSGKVIAF 20 (169)
Q Consensus 5 L~de~G~GKT~~~i~~ 20 (169)
|.-..|+|||..+=.+
T Consensus 27 I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 27 LSGAPGSGKSTLSNPL 42 (208)
T ss_dssp EECCTTSCTHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5678999999655333
No 468
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=31.89 E-value=14 Score=23.33 Aligned_cols=39 Identities=8% Similarity=0.084 Sum_probs=27.1
Q ss_pred ccCCCCeEEEecHHHHHhchhccccccccEEEEeCCcccCC
Q psy1090 94 ISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKN 134 (169)
Q Consensus 94 ~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEah~~k~ 134 (169)
.....|.|+|.+|..+.. +....++..++++||-.++..
T Consensus 78 l~~~GD~vII~aYa~~~~--~E~~~~~P~vV~vd~~N~i~~ 116 (139)
T 2c45_A 78 LVHPGDLVILIAYATMDD--ARARTYQPRIVFVDAYNKPID 116 (139)
T ss_dssp TSCTTCEEEEEECCEEEH--HHHHSCCCEEEECCTTCC---
T ss_pred cCCCCCEEEEEECCcCCH--HHhccCCCeEEEECCCCCEEE
Confidence 346677789999988653 334567889999999887754
No 469
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=31.79 E-value=14 Score=30.08 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=17.5
Q ss_pred cccHHHHHHhc-c--ccccEEEEeccCCCCCchh
Q psy1090 135 KKSKLSIKLTA-L--RATFKVLLTGWYYPNKWSK 165 (169)
Q Consensus 135 ~~~~~~~~~~~-l--~~~~~~~lT~TP~~n~~~e 165 (169)
.+|+.++.++. | +++-.++.+-.|-..+..|
T Consensus 664 R~SkLT~lL~~slggn~~t~~i~~isp~~~~~~e 697 (715)
T 4h1g_A 664 RNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNE 697 (715)
T ss_dssp GGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHH
T ss_pred ccCHHHHHHHhhcCCCceEEEEEEECCChhhHHH
Confidence 34566666653 2 4555566666776655544
No 470
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=30.82 E-value=1.5e+02 Score=21.27 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCC
Q psy1090 19 AFFCKIIEEQALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 19 ~~i~~~~~~~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
..+..+......+++||+|+. .......+.+.+. +..+..++|.
T Consensus 232 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~ 276 (395)
T 3pey_A 232 DVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGD 276 (395)
T ss_dssp HHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTT
T ss_pred HHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCC
Confidence 334444444556789999998 4455566666654 4567777774
No 471
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=30.78 E-value=24 Score=30.70 Aligned_cols=25 Identities=4% Similarity=-0.076 Sum_probs=18.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 3 TVIPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i~~i~~~~~~ 27 (169)
.|+..|.|+|||..+=-++.++..-
T Consensus 172 i~isGeSGaGKTe~~k~~~~yla~~ 196 (1184)
T 1i84_S 172 ILCTGESGAGKTENTKKVIQYLAVV 196 (1184)
T ss_dssp EECCCSTTSSTTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCccHHHHHHHHHHHHH
Confidence 4678999999998776666665543
No 472
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=30.47 E-value=34 Score=23.37 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=11.7
Q ss_pred cccCCCCCcHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIA 19 (169)
Q Consensus 4 iL~de~G~GKT~~~i~ 19 (169)
+|.-..|+|||..+=.
T Consensus 31 ~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 31 VILGPPGSGKGTVCQR 46 (246)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4667899999965533
No 473
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=30.17 E-value=69 Score=24.44 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=12.6
Q ss_pred cccCCCCCcHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFC 22 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~ 22 (169)
.+....|+|||..+-.+..
T Consensus 178 ~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 178 LIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp EEECCSSSSHHHHHHHHHH
T ss_pred EEecCCCCChhHHHHHHHH
Confidence 3556789999976644433
No 474
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=29.83 E-value=34 Score=22.66 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=10.9
Q ss_pred ccCCCCCcHHHHHHH
Q psy1090 5 IPDPTRYRKSGKVIA 19 (169)
Q Consensus 5 L~de~G~GKT~~~i~ 19 (169)
|.-.+|+|||..+=.
T Consensus 17 ltG~~GSGKSTva~~ 31 (192)
T 2grj_A 17 VTGKIGTGKSTVCEI 31 (192)
T ss_dssp EECSTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 556799999965533
No 475
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=29.63 E-value=34 Score=22.93 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=13.3
Q ss_pred cccCCCCCcHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFF 21 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i 21 (169)
+|.-..|+|||...-.++
T Consensus 23 vl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALL 40 (197)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 577899999996554443
No 476
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=29.10 E-value=33 Score=24.95 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=11.9
Q ss_pred cccEEEEeCCcccCCc
Q psy1090 120 TWNCIIVDEGHSVKNK 135 (169)
Q Consensus 120 ~~~~vi~DEah~~k~~ 135 (169)
+.+++++||.-.--.+
T Consensus 272 ~p~~lllDEp~~~LD~ 287 (339)
T 3qkt_A 272 EISLLILDEPTPYLDE 287 (339)
T ss_dssp TTCEEEEECCCTTCCH
T ss_pred CCCEEEEECCCCCCCH
Confidence 5789999997754443
No 477
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=29.07 E-value=82 Score=21.22 Aligned_cols=23 Identities=4% Similarity=-0.188 Sum_probs=15.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhC
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQ 28 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~ 28 (169)
.--.|+|||.++-.+...+...+
T Consensus 9 eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 9 EGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHHHHcC
Confidence 44579999988866666555444
No 478
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=28.97 E-value=29 Score=23.89 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=12.3
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
.|.-.+|+|||..+=.+
T Consensus 26 ~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 26 GVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 36678999999766433
No 479
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=28.74 E-value=1.7e+02 Score=21.29 Aligned_cols=36 Identities=8% Similarity=-0.083 Sum_probs=24.1
Q ss_pred CCCCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCCH
Q psy1090 28 QALEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGNA 65 (169)
Q Consensus 28 ~~~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~~ 65 (169)
...+++||+|+. .......+.+.+. +..+..++|..
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~ 310 (417)
T 2i4i_A 274 GKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDR 310 (417)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTS
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCC
Confidence 345789999998 4455555666554 56777888743
No 480
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=28.61 E-value=73 Score=22.93 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=10.9
Q ss_pred cccEEEEeCCcccC
Q psy1090 120 TWNCIIVDEGHSVK 133 (169)
Q Consensus 120 ~~~~vi~DEah~~k 133 (169)
+.+++|+||.+.+.
T Consensus 194 ~p~ilIlDep~~~~ 207 (312)
T 3aez_A 194 HPDILILEGLNVLQ 207 (312)
T ss_dssp SCSEEEEECTTTTC
T ss_pred CCCEEEECCccccC
Confidence 56789999988764
No 481
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=28.58 E-value=23 Score=24.49 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=11.2
Q ss_pred cccCCCCCcHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVI 18 (169)
Q Consensus 4 iL~de~G~GKT~~~i 18 (169)
.|.-.+|+|||..+=
T Consensus 31 ~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 31 TVDGPSGAGKGTLCK 45 (252)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 356789999996543
No 482
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=28.53 E-value=18 Score=25.63 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=11.0
Q ss_pred cccCCCCCcHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVI 18 (169)
Q Consensus 4 iL~de~G~GKT~~~i 18 (169)
.|.-.+|+|||..+=
T Consensus 79 ~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 79 GLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEECTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 455679999996653
No 483
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=28.43 E-value=24 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=10.1
Q ss_pred ccCCCCCcHHHHH
Q psy1090 5 IPDPTRYRKSGKV 17 (169)
Q Consensus 5 L~de~G~GKT~~~ 17 (169)
+.-.+|+|||..+
T Consensus 26 i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 26 ISGVTNSGKTTLA 38 (207)
T ss_dssp EEESTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 5667899999654
No 484
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=28.40 E-value=31 Score=21.18 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=11.6
Q ss_pred cccCCCCCcHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~ 20 (169)
++.-+.|.|||...-.+
T Consensus 5 ~v~G~~~~GKSsli~~l 21 (161)
T 2dyk_A 5 VIVGRPNVGKSSLFNRL 21 (161)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 45667899999554443
No 485
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=28.39 E-value=46 Score=22.95 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=15.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHh
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEE 27 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~ 27 (169)
+.--.|+|||.++-.+...+...
T Consensus 32 ~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 32 IEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEESTTSCHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHHhc
Confidence 44567999998876666655443
No 486
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=28.02 E-value=83 Score=20.74 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=22.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecCcchH-HHHHHHHHh
Q psy1090 6 PDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPLSVLN-NWEAEFRKF 52 (169)
Q Consensus 6 ~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~~~l~-qW~~e~~~~ 52 (169)
.-..|+|||.-+..++ . . ..|.+.+++..... .|.+.+.++
T Consensus 5 ~Gg~~SGKS~~A~~la----~-~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 5 TGGARSGKSRHAEALI----G-D-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EECTTSSHHHHHHHHH----C-S-CSSEEEEECCCC------CHHHHH
T ss_pred ECCCCCcHHHHHHHHH----h-c-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 3468999996554433 2 2 35788888865433 454444444
No 487
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=27.67 E-value=35 Score=22.54 Aligned_cols=29 Identities=7% Similarity=-0.076 Sum_probs=18.6
Q ss_pred cccccEEEEeCCcccCCcccHHHHHHhcc
Q psy1090 118 KITWNCIIVDEGHSVKNKKSKLSIKLTAL 146 (169)
Q Consensus 118 ~~~~~~vi~DEah~~k~~~~~~~~~~~~l 146 (169)
..+.+++|+||+-.+-+.+.....++..+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 34689999999765544444455555544
No 488
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=27.46 E-value=60 Score=25.47 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=16.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHH
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIE 26 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~ 26 (169)
+.-+.|+|||..++..|.....
T Consensus 167 I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 167 IIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp EEESTTSSHHHHHHHHHHHTHH
T ss_pred EecCCCCCchHHHHHHHHHHHh
Confidence 4456799999998877776655
No 489
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=27.31 E-value=30 Score=25.40 Aligned_cols=37 Identities=3% Similarity=-0.174 Sum_probs=21.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHh----CCCCceEEEecCcc
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEE----QALEPNLIVCPLSV 41 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~----~~~~~~Liv~P~~~ 41 (169)
|.-+.|+|||..+..++...... +..++++.+.-...
T Consensus 136 I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 136 VFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred EECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 56689999997766655432111 01246566665443
No 490
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=26.94 E-value=43 Score=22.79 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=13.8
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
++.-..|+|||.++-.+...
T Consensus 30 ~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 30 TFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 45567899999776555443
No 491
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=26.75 E-value=42 Score=22.22 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=11.3
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
+|....|+|||...
T Consensus 5 Vi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 5 VISGPSGTGKSTLL 18 (186)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 67889999999544
No 492
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=26.73 E-value=1.4e+02 Score=19.51 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=22.9
Q ss_pred CCceEEEecC-cchHHHHHHHHHhCCCceEEEEeCC
Q psy1090 30 LEPNLIVCPL-SVLNNWEAEFRKFAPFVRTVKYYGN 64 (169)
Q Consensus 30 ~~~~Liv~P~-~~l~qW~~e~~~~~~~~~~~~~~g~ 64 (169)
.+++||+|+. ..+....+.+... +..+..++|.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~ 87 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGG 87 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCC
Confidence 4589999997 4455555666554 5677788885
No 493
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=26.62 E-value=35 Score=24.68 Aligned_cols=30 Identities=13% Similarity=-0.043 Sum_probs=18.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCceEEEecC
Q psy1090 5 IPDPTRYRKSGKVIAFFCKIIEEQALEPNLIVCPL 39 (169)
Q Consensus 5 L~de~G~GKT~~~i~~i~~~~~~~~~~~~Liv~P~ 39 (169)
|.-+.|+|||...-.++..+ .+.++..+|.
T Consensus 131 IvGpsGsGKSTLl~lL~gl~-----~G~I~~~v~q 160 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHFL-----GGSVLSFANH 160 (305)
T ss_dssp EECSSSSSHHHHHHHHHHHH-----TCEEECGGGT
T ss_pred EECCCCCcHHHHHHHHhhhc-----CceEEEEecC
Confidence 56788999996554444333 3566655554
No 494
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=26.59 E-value=45 Score=21.96 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=11.3
Q ss_pred cccCCCCCcHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVI 18 (169)
Q Consensus 4 iL~de~G~GKT~~~i 18 (169)
.|.-..|+|||...=
T Consensus 8 ~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 8 VLSGPSGAGKSTLLK 22 (198)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 467789999995543
No 495
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=26.37 E-value=23 Score=33.74 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=11.4
Q ss_pred CccccCCCCCcHHHHHHHH
Q psy1090 2 DTVIPDPTRYRKSGKVIAF 20 (169)
Q Consensus 2 g~iL~de~G~GKT~~~i~~ 20 (169)
|+.+..+.|+|||.++-++
T Consensus 647 ~~~l~GpaGtGKTe~vk~L 665 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAF 665 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred CCcccCCCCCCcHHHHHHH
Confidence 4566667777777554333
No 496
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=26.18 E-value=25 Score=24.32 Aligned_cols=14 Identities=29% Similarity=0.043 Sum_probs=10.6
Q ss_pred cccCCCCCcHHHHH
Q psy1090 4 VIPDPTRYRKSGKV 17 (169)
Q Consensus 4 iL~de~G~GKT~~~ 17 (169)
++.--+|+|||.++
T Consensus 28 ~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 28 SIEGNIAAGKSTFV 41 (263)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45567899999665
No 497
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=26.15 E-value=21 Score=21.73 Aligned_cols=33 Identities=3% Similarity=-0.109 Sum_probs=22.2
Q ss_pred ccCCCCeEEEecHHHHHhchhccccccccEEEEeCC
Q psy1090 94 ISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEG 129 (169)
Q Consensus 94 ~~~~~~ii~i~ty~~~~~~~~~~~~~~~~~vi~DEa 129 (169)
.....|.|+|.+|..+.. +.... +..++++||-
T Consensus 81 ~~~~GD~vII~ay~~~~~--~e~~~-~P~vV~vd~~ 113 (114)
T 3oug_A 81 RCEIGDQLFIISYTQVDP--TRENI-KPKLVDLKTG 113 (114)
T ss_dssp GCCTTCEEEEEEEEEECT--TSCCC-CCEEEECC--
T ss_pred ccCCCCEEEEEECCcCCH--HHHhc-CCEEEEeCCC
Confidence 346677788999988654 33445 7888899884
No 498
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=26.11 E-value=44 Score=22.62 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=11.3
Q ss_pred cccCCCCCcHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVI 18 (169)
Q Consensus 4 iL~de~G~GKT~~~i 18 (169)
.|.-.+|+|||..+=
T Consensus 20 ~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 20 AIDGPASSGKSTVAK 34 (236)
T ss_dssp EEECSSCSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 466789999996553
No 499
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=25.79 E-value=37 Score=22.45 Aligned_cols=20 Identities=10% Similarity=-0.134 Sum_probs=13.8
Q ss_pred cccCCCCCcHHHHHHHHHHH
Q psy1090 4 VIPDPTRYRKSGKVIAFFCK 23 (169)
Q Consensus 4 iL~de~G~GKT~~~i~~i~~ 23 (169)
++.-..|+|||...-.++..
T Consensus 34 ~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 34 NIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEECTTSCHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 34557899999766565544
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=25.76 E-value=37 Score=22.51 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=12.0
Q ss_pred ccccCCCCCcHHHHHH
Q psy1090 3 TVIPDPTRYRKSGKVI 18 (169)
Q Consensus 3 ~iL~de~G~GKT~~~i 18 (169)
..|.-.+|+|||..+-
T Consensus 6 i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 6 IALDGPAAAGKSTIAK 21 (219)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3567789999996653
Done!