RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1090
         (169 letters)



>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 230

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 27/144 (18%)

Query: 13  KSGKVIAFFCKIIEEQALEPNLIVCPLSVLNNWEAEFRKFAPFVRTVKYYGNAIERKALQ 72
           K+ + IA F    +E  L P+L++CPLSVL NWE E  KFAP +R   ++ +  + K   
Sbjct: 44  KTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLED 103

Query: 73  SEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCIIVDEGHSV 132
            +                          I++TT  ++  D   LK++ W  I++DE  ++
Sbjct: 104 YD--------------------------IILTTYAVLLRDTR-LKEVEWKYIVIDEAQNI 136

Query: 133 KNKKSKLSIKLTALRATFKVLLTG 156
           KN ++K+   +  L++ +++ LTG
Sbjct: 137 KNPQTKIFKAVKELKSKYRIALTG 160


>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 298

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 15  GK---VIAFFCKIIEEQALEPN-----LIVCPLSVLNNWEAEFRKFAPF-VRTVKYYGNA 65
           GK    I     ++++           ++V P S++ NW  E  K+    V+ V   G +
Sbjct: 91  GKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGS 150

Query: 66  IERKALQSEALSLPTIKVPAKKGKTKKQISLKLPLILVTTPQIIENDFGFLKKITWNCII 125
            +    +                   +Q       IL+ + +        L K     +I
Sbjct: 151 KDEIDSK-------------LVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVI 197

Query: 126 VDEGHSVKNKKSKLSIKLTALRATFKVLLTGWYYPNKWSKQCTL 169
            DEGH +KN  ++  + L ++ A  +VL++G    N   +  +L
Sbjct: 198 CDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSL 241


>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 206

 Score = 30.6 bits (68), Expect = 0.056
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 121 WNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
           +  +I DE H +  +      ++    A F++ LT 
Sbjct: 170 FMLLIFDEVHHLPAESYVQIAQM--SIAPFRLGLTA 203


>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
           10665]}
          Length = 282

 Score = 25.2 bits (54), Expect = 4.6
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 101 ILVTTPQIIENDFGFLKKITWNCIIVDEGHSVKNKKSKLSIKLTALRATFKVLLTG 156
           ++V T Q +           +  ++ DE H    K    SI        FK  L+G
Sbjct: 207 VVVGTWQTVVKQPKEWFS-QFGMMMNDECHLATGKSIS-SIISGLNNCMFKFGLSG 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 659,923
Number of extensions: 28815
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 6
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)