BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10901
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs6
Length = 148
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 91/125 (72%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVD 68
SF E+LKD +GRD F +FL+ EFS ENL+FW AVQ+LK PL DV + EEIW EFLA
Sbjct: 14 SFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEIWQEFLAPG 73
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSK 128
A IN+DS S+E+T +N+++ R++F+ A H+Y LMKSDSY+R+LRS+ Y+D L K
Sbjct: 74 APSAINLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLLLAKK 133
Query: 129 KKSSM 133
K S+
Sbjct: 134 KGKSL 138
>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
pdb|2A72|B Chain B, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
Length = 146
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 86/118 (72%)
Query: 12 ELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASC 71
E LKDP+GR+ F KFL+ EFS ENL+FW AV++LK P+ +VP++ +EIW EFLA A
Sbjct: 19 EALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEVPSRVQEIWQEFLAPGAPS 78
Query: 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKK 129
IN+DS+S++ T N++ P R++F+ A H+Y LMKSDSY R++RS Y++ L KK
Sbjct: 79 AINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKK 136
>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signaling 7
Length = 139
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 86/115 (74%)
Query: 12 ELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASC 71
E LKDP+GR+ F KFL+ EFS ENL+FW AV++LK P+ +VP++ +EIW EFLA A
Sbjct: 21 EALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEVPSRVQEIWQEFLAPGAPS 80
Query: 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNG 126
IN+DS+S++ T N++ P R++F+ A H+Y LMKSDSY R++RS Y++ L+G
Sbjct: 81 AINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLSG 135
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 80/118 (67%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
A +F EL++DP GR F FL KEFSGENL FWEA ++LK + V KAEEI+ FLA
Sbjct: 22 AFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLA 81
Query: 67 VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFL 124
A IN+D ++ ++T K +++P R+ D A H+Y LMK DSY+RYL+S IY++ L
Sbjct: 82 PGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEML 139
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|C Chain C, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 424
Score = 117 bits (294), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/118 (50%), Positives = 79/118 (66%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
A +F EL++DP GR F FL KEFSGENL FWEA ++LK + V KAEEI+ FLA
Sbjct: 299 AFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLA 358
Query: 67 VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFL 124
A IN+D ++ ++T K + +P R+ D A H+Y LMK DSY+RYL+S IY++ L
Sbjct: 359 PGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEML 416
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 79/118 (66%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
A +F EL++DP GR F FL KEFSGENL FWEA ++LK + V KAEEI+ FLA
Sbjct: 22 AFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLA 81
Query: 67 VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFL 124
A IN+D ++ ++T K +++P R+ D A H+Y L K DSY+RYL+S IY++ L
Sbjct: 82 PGARRWINIDGKTXDITVKGLKHPHRYVLDAAQTHIYXLXKKDSYARYLKSPIYKEXL 139
>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human)
pdb|2BV1|B Chain B, Regulator Of G-Protein Signalling 1 (Human)
pdb|2GTP|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 145
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSE 63
+Q + S +LL + G++ F FL EFS EN++FW A ++ K +P KAEEI+
Sbjct: 20 MQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKKTESDLLPCKAEEIYKA 79
Query: 64 FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
F+ DA+ IN+D R+ E T K I+ PT FD A +Y LM+ DSY R+L+SDIY +
Sbjct: 80 FVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNL 139
Query: 124 LN 125
LN
Sbjct: 140 LN 141
>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
Length = 141
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFL 65
A SF LL G F FL EFS ENL+FW A +E K A + +KA I+ EF+
Sbjct: 15 ADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFV 74
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
V A +N+D ++ E TRKN++ P+ FD A V+ LM+ DSY R+LRS +Y D L+
Sbjct: 75 DVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLS 134
Query: 126 GSKKKSS 132
S+++ S
Sbjct: 135 QSQRRLS 141
>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 18
Length = 140
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFL 65
SF +LL G + FT+FL EFS EN++FW A ++ K + KA+ I+ +F+
Sbjct: 16 GESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFI 75
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
DA +N+D + E+ +I PT SFD A + VY LM+ DSY+R+L+SDIY D ++
Sbjct: 76 QTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMS 135
Query: 126 G 126
G
Sbjct: 136 G 136
>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
pdb|2OWI|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
Length = 151
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFL 65
SF +LL G + FT+FL EFS EN++FW A ++ K + KA+ I+ +F+
Sbjct: 12 GESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFI 71
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
DA +N+D + E+ +I PT SFD A + VY LM+ DSY+R+L+SDIY D +
Sbjct: 72 QTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLME 131
Query: 126 GSKKKSS 132
G ++ +
Sbjct: 132 GRPQRPT 138
>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14
Length = 154
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEE---IWSE 63
A SF LL+DPLG +FT+FL KEFS EN+ FW+A + + +P +D A+E I+ E
Sbjct: 12 ALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQE 71
Query: 64 FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
FL+ A P+N+D R L + + P F +++LMK DSY+R+++S +YR+
Sbjct: 72 FLSSQALSPVNID-RQAWLGEEVLAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYREC 130
Query: 124 L 124
L
Sbjct: 131 L 131
>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain
Length = 127
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Query: 3 SLQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCL-PLADVPAKAEEIW 61
+L+ S +LL G F FL EFS ENL+FW A ++ K + + + +KA++I+
Sbjct: 4 ALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIF 63
Query: 62 SEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYR 121
+E++A+ A +N+DS + E T+ N+++ TR FD A ++ LM+ DSY R+LRSD+Y
Sbjct: 64 AEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYL 123
Query: 122 DFLN 125
D +N
Sbjct: 124 DLIN 127
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein
Signaling 8, Rgs8
Length = 155
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFL 65
A SF LL G F FL EFS ENL+FW A +E K A + +KA I+ EF+
Sbjct: 36 ADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFV 95
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
V A +N+D ++ E TRKN++ P+ FD A V+ LM+ DSY R+LRS +Y D L+
Sbjct: 96 DVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLS 155
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human Regulator
Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 4/119 (3%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD---VPAKAEEIWSE 63
A SF LL+DP+G +F+ FL KEFS EN+ FW+A + +P D + +A EI+S+
Sbjct: 16 AVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSK 75
Query: 64 FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
FL A+ P+N+DS++ +L + P F +++LMK DSY+R+L+S +Y++
Sbjct: 76 FLCSKATTPVNIDSQA-QLADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQE 133
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signalling 5 (Rgs 5)
Length = 150
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Query: 3 SLQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIW 61
+LQ S +LL++ G F FL EFS ENL+FW A ++ K + A + KA++I+
Sbjct: 22 ALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIY 81
Query: 62 SEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYR 121
EF+ +A +N+D + ++T KN+ P+ SFD A ++ LM+ DS R++RS+ Y+
Sbjct: 82 EEFIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQ 141
Query: 122 DFLNG 126
+ ++G
Sbjct: 142 ELISG 146
>pdb|2I59|A Chain A, Solution Structure Of Rgs10
Length = 138
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWSEFL 65
A+S LL+DP G F +FL KEFS EN+ FW A ++ K + + KA+EI+ FL
Sbjct: 12 AASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFL 71
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY 120
+ AS +NV+ +S L K +E P F +++LMK DSYSR+L+SD++
Sbjct: 72 SSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLF 125
>pdb|2DLR|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 10
Length = 149
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWSEFL 65
A+S LL+DP G F +FL KEFS EN+ FW A ++ K + + KA+EI+ FL
Sbjct: 16 AASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFL 75
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY 120
+ AS +NV+ +S L K +E P F +++LMK DSYSR+L+SD++
Sbjct: 76 SSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLF 129
>pdb|2IHB|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 153
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWSEFL 65
A+S LL+DP G F +FL KEFS EN+ FW A ++ K + + KA+EI+ FL
Sbjct: 32 AASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFL 91
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY 120
+ AS +NV+ +S L K +E P F +++LMK DSYSR+L+SD++
Sbjct: 92 SSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLF 145
>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|B Chain B, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|C Chain C, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|D Chain D, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|E Chain E, Structure Of The Regulator Of G-Protein Signaling 16
Length = 161
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD-VPAKAEEIWSEFLAV 67
SF LL G F FL EFS ENL+FW A +E K + A + ++A +I+ EF+
Sbjct: 36 SFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICS 95
Query: 68 DASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+A +N+D + ELTR N++ T FD A LM+ DSY R+L+S YRD
Sbjct: 96 EAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRD 150
>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 140
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD-VPAKAEEIWSEFLAV 67
SF LL G F FL EFS ENL+FW A +E K + A + ++A +I+ EF+
Sbjct: 15 SFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICS 74
Query: 68 DASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+A +N+D + ELTR N++ T FD A LM+ DSY R+L+S YRD
Sbjct: 75 EAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRD 129
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIWSEFL 65
A S L+ G F FL E+S EN+ FW + +E K + + + KA++I++EF+
Sbjct: 60 AESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFI 119
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
+V A+ +N+DS + E T +N+ PT FD A +++LM+ DSY R+L+S Y D N
Sbjct: 120 SVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTN 179
Query: 126 GS 127
S
Sbjct: 180 PS 181
>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
pdb|1EZY|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
Length = 166
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIWSEFL 65
A S L+ G F FL E+S EN+ FW + +E K + + + KA++I++EF+
Sbjct: 14 AESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFI 73
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
+V A+ +N+DS + E T +N+ PT FD A +++LM+ DSY R+L+S Y D N
Sbjct: 74 SVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTN 133
Query: 126 GS 127
S
Sbjct: 134 PS 135
>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 142
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFL 65
+ +F ELL G F FL EFS EN++FW A ++ K + +KA +I+++F+
Sbjct: 14 SEAFDELLASKYGLAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFI 73
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+A IN+D ++ L +NI+ T F TA VY LM++DSY R+L+S+ Y+D
Sbjct: 74 EKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENDSYPRFLKSEFYQD 130
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADV-PAKAEEIWSEFL 65
A SF +L+ P GR F FL E+S EN+ FW A +ELK V KA I+ +++
Sbjct: 21 AQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYV 80
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
++ + +++DSR E K ++ P+ +FD A +Y LM DSY R+L S YR L
Sbjct: 81 SILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALLP 140
Query: 126 GSKKKSSM 133
SS+
Sbjct: 141 WVDSSSSL 148
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7L|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 137
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD-VPAKAEEIWSEFLAV 67
SF LL G F FL EFS ENL+FW A +E K + A + ++A I+ E++
Sbjct: 21 SFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRS 80
Query: 68 DASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
+A +N+D + ELT+ N++ T FD A LM+ DSY R+L+S YRD
Sbjct: 81 EAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDL 136
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|D Chain D, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 129
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD-VPAKAEEIWSEFLAV 67
SF LL G F FL EFS ENL+FW A +E K + A + ++A I+ E++
Sbjct: 13 SFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRS 72
Query: 68 DASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
+A +N+D + ELT+ N++ T FD A LM+ DSY R+L+S YRD
Sbjct: 73 EAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDL 128
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFL 65
+ +F ELL G F FL EF EN++FW A ++ K + +KA +I+++F+
Sbjct: 24 SEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFI 83
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+A IN+D ++ L +NI+ T F TA VY LM+++SY R+L S+ Y+D
Sbjct: 84 EKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQD 140
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFL 65
+ +F ELL G F FL EF EN++FW A ++ K + +KA +I+++F+
Sbjct: 15 SEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFI 74
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+A IN+D ++ L +NI+ T F TA VY LM+++SY R+L S+ Y+D
Sbjct: 75 EKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQD 131
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17
(Rgsz2)
Length = 158
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADV-PAKAEEIWSEFL 65
+ +F +++K P GR+ F +FL E+S ENL FW A ++LK V KA I+ +++
Sbjct: 34 SQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYI 93
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
++ + +++DSR E+ +N+ +P ++ A +Y LM DS+ R+L S IY+ F+
Sbjct: 94 SILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVE 153
Query: 126 GS 127
+
Sbjct: 154 ST 155
>pdb|1EMU|A Chain A, Structure Of The Axin Rgs-Homologous Domain In Complex
With A Samp Repeat From Apc
Length = 132
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAK-----AE 58
L+ A S LL D G F FL +E + L FW A + L D + A
Sbjct: 4 LKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLAR 63
Query: 59 EIWSEFL-----AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSR 113
I+ +++ V S K + +P FD A + M+ ++Y
Sbjct: 64 AIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAM--FDQAQTEIQATMEENTYPS 121
Query: 114 YLRSDIYRDF 123
+L+SDIY ++
Sbjct: 122 FLKSDIYLEY 131
>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
Length = 147
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 12/127 (9%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAK-----AEEIW 61
A S LL D G F FL +E + L FW A + L D + A I+
Sbjct: 13 AESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIY 72
Query: 62 SEFL-----AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLR 116
+++ V S K + +P FD A + M+ ++Y +L+
Sbjct: 73 RKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAM--FDQAQTEIQATMEENTYPSFLK 130
Query: 117 SDIYRDF 123
SDIY ++
Sbjct: 131 SDIYLEY 137
>pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|B Chain B, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|C Chain C, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|D Chain D, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
Length = 438
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 27 LDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFL--AVDASCPINVDSRSHELTR 84
+ KE GEN FW + + L D+ + + ++ FL AVD + I + + L
Sbjct: 175 ITKELGGENYVFWGGREGYETLLNTDMEFELDN-FARFLHMAVDYAKEIGFEGQF--LIE 231
Query: 85 KNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDI 119
+ PT+ +D A+V ++ +Y + +I
Sbjct: 232 PKPKEPTKHQYDFDVANVLAFLRKYDLDKYFKVNI 266
>pdb|1B6B|A Chain A, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
pdb|1B6B|B Chain B, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
Length = 174
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 44 ELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELT 83
E +CL D E F++V +CP+N+D H LT
Sbjct: 9 EFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLT 48
>pdb|1CJW|A Chain A, Serotonin N-Acetyltransferase Complexed With A
Bisubstrate Analog
Length = 166
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 44 ELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELT 83
E +CL D E F++V +CP+N+D H LT
Sbjct: 7 EFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLT 46
>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
N-Acetyltransferase Catalysis And Inhibition
pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
Length = 207
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 44 ELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELT 83
E +CL D E F++V +CP+N+D H LT
Sbjct: 36 EFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLT 75
>pdb|1L0C|A Chain A, Investigation Of The Roles Of Catalytic Residues In
Serotonin N- Acetyltransferase
Length = 207
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 44 ELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELT 83
E +CL D E F++V +CP+N+D H LT
Sbjct: 36 EFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLT 75
>pdb|1IB1|E Chain E, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|F Chain F, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|G Chain G, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|H Chain H, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
Length = 200
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 44 ELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELT 83
E +CL D E F++V +CP+N+D H LT
Sbjct: 35 EFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLT 74
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 27 LDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKN 86
+ KE GE FW + + L D+ + E + + FL + + L
Sbjct: 175 ITKELGGEGYVFWGGREGYETLLNTDLGFELENL-ARFLRMAVDYAKRIGFTGQFLIEPK 233
Query: 87 IENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDI 119
+ PT+ +D A Y +KS Y + +I
Sbjct: 234 PKEPTKHQYDFDVATAYAFLKSHGLDEYFKFNI 266
>pdb|3IU6|A Chain A, Crystal Structure Of The Sixth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 147
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 61 WSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY 120
+E AVD + P N + ++ RKN+EN D H++ +++ S+IY
Sbjct: 34 LAEIPAVDPNFP-NKPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIY 92
Query: 121 RD 122
D
Sbjct: 93 ED 94
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 17 PLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD 52
P R K + F G++LKF + Q +C +AD
Sbjct: 117 PFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVAD 152
>pdb|2R4O|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta Npa
pdb|2R4O|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta Npa
Length = 427
Score = 26.9 bits (58), Expect = 3.7, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|2R8A|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N8
pdb|2R8A|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N8
Length = 419
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 193 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 227
>pdb|3PGS|A Chain A, Phe3gly Mutant Of Ecfadl
pdb|3PGS|B Chain B, Phe3gly Mutant Of Ecfadl
Length = 427
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|3PGR|A Chain A, Asp348arg Mutant Of Ecfadl
Length = 427
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|3DWN|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant A77eS100R
pdb|3DWN|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant A77eS100R
Length = 427
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|2R89|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N3
pdb|2R89|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N3
Length = 424
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 198 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 232
>pdb|2R4L|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
pdb|2R4L|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
pdb|2R4L|C Chain C, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
Length = 427
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|1T16|A Chain A, Crystal Structure Of The Bacterial Fatty Acid Transporter
Fadl From Escherichia Coli
pdb|1T16|B Chain B, Crystal Structure Of The Bacterial Fatty Acid Transporter
Fadl From Escherichia Coli
pdb|1T1L|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl
pdb|1T1L|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl
Length = 427
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|3PGU|A Chain A, Phe3glu Mutant Of Ecfadl
Length = 427
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|3PF1|A Chain A, E. Coli Fadl Asp348ala Mutant
pdb|3PF1|B Chain B, E. Coli Fadl Asp348ala Mutant
Length = 424
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|2R4N|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant N33a
pdb|2R4N|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant N33a
Length = 427
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 235
>pdb|2R88|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta S3 Kink
pdb|2R88|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta S3 Kink
Length = 426
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 200 NGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDF 234
>pdb|2R4P|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant G212e
pdb|2R4P|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant G212e
Length = 427
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
N +W F A +Y L K++ Y+ RS++ DF
Sbjct: 201 NGNQWGFGWNAEILYELDKNNRYALTYRSEVKIDF 235
>pdb|3QUF|A Chain A, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
pdb|3QUF|B Chain B, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
Length = 414
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 2 FSLQPASSFRELLKDPLGRDHFTKFLDKE-FSGEN---------LKFWEAVQELKCLPLA 51
F+ Q A SF LL G + LD + +SG++ K WEA + +P
Sbjct: 182 FNTQIAGSFTGLLASYYGEQGKSGDLDADIWSGKSTFTKDWTPVFKRWEAAAKAGVIPQK 241
Query: 52 DVPAKAEEIWSEFLA 66
V A+++ EF++
Sbjct: 242 SVGLSADQVKQEFVS 256
>pdb|2X8T|A Chain A, Crystal Structure Of The Abn2 H318a Mutant
pdb|2X8T|B Chain B, Crystal Structure Of The Abn2 H318a Mutant
Length = 471
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 29 KEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
K+++G L+ W++V+E + + + E +W LA
Sbjct: 434 KKYNGVFLRQWDSVREKNVMTFSVLNTSGEAVWGSKLA 471
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 71 CPINVDSRSHELTRKNIENPTRW-SFDTAAAHVYHLMKSDSYSR 113
C I +S+ +LT + + R + DTA V+ LMKSD Y R
Sbjct: 49 CVIVSESKIIDLTNQEQDLSERIETNDTAKGAVFKLMKSDFYER 92
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 12 ELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASC 71
E+L + L R+HF ++ + L WE + +C+ V EE + + S
Sbjct: 216 EVLDESLNRNHFQSYIMADMYSFGLILWEVAR--RCVSGGIV----EEYQLPYHDLVPSD 269
Query: 72 PINVDSRSHELTRK-NIENPTRWSFDTAAAHVYHLM 106
P D R +K P RWS D + LM
Sbjct: 270 PSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLM 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,096,460
Number of Sequences: 62578
Number of extensions: 154588
Number of successful extensions: 499
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 57
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)