Query psy10901
Match_columns 137
No_of_seqs 107 out of 1078
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:28:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00315 RGS Regulator of G 100.0 2.5E-30 5.5E-35 172.6 10.9 115 9-123 1-118 (118)
2 PF00615 RGS: Regulator of G p 100.0 4.9E-28 1.1E-32 160.6 10.3 115 9-123 1-118 (118)
3 KOG3589|consensus 99.9 3.6E-27 7.7E-32 174.5 11.6 126 4-129 75-205 (221)
4 KOG3590|consensus 99.6 5.3E-16 1.2E-20 121.8 6.3 122 4-125 109-308 (602)
5 KOG3590|consensus 99.6 3.2E-15 6.9E-20 117.5 7.8 123 8-130 316-449 (602)
6 KOG0986|consensus 99.3 1.7E-11 3.7E-16 98.0 10.6 119 7-125 50-173 (591)
7 PF09128 RGS-like: Regulator o 98.8 8.3E-08 1.8E-12 69.3 10.9 107 8-115 6-117 (188)
8 COG4496 Uncharacterized protei 54.7 19 0.00042 23.0 3.0 73 16-88 8-81 (100)
9 PF07956 DUF1690: Protein of U 48.1 7.5 0.00016 26.9 0.5 29 19-48 112-140 (142)
10 PF11946 DUF3463: Domain of un 43.8 57 0.0012 22.6 4.3 31 97-128 26-56 (138)
11 COG4790 EscR Type III secretor 37.4 40 0.00087 24.7 2.8 29 16-44 92-120 (214)
12 PF02184 HAT: HAT (Half-A-TPR) 33.5 28 0.00062 17.8 1.2 13 55-67 4-16 (32)
13 COG4321 Uncharacterized protei 32.2 98 0.0021 20.2 3.7 47 37-88 34-80 (102)
14 KOG2074|consensus 31.7 79 0.0017 26.7 4.0 110 15-129 125-242 (548)
15 PF12122 DUF3582: Protein of u 29.7 47 0.001 21.6 2.0 57 14-71 7-65 (101)
16 PF10312 Cactin_mid: Conserved 29.1 2.3E+02 0.0049 20.6 8.2 54 72-128 125-178 (191)
17 PF15182 OTOS: Otospiralin 25.1 82 0.0018 18.8 2.3 31 35-65 24-55 (69)
18 KOG1915|consensus 24.1 1.9E+02 0.004 24.7 4.9 53 9-66 149-202 (677)
19 PF10537 WAC_Acf1_DNA_bd: ATP- 22.7 1.6E+02 0.0035 19.1 3.6 38 75-112 61-98 (102)
20 KOG2857|consensus 22.3 2.7E+02 0.0059 19.5 4.7 60 6-66 86-155 (157)
21 PHA02335 hypothetical protein 20.0 2.8E+02 0.006 18.4 4.3 45 30-75 5-58 (118)
No 1
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=99.97 E-value=2.5e-30 Score=172.56 Aligned_cols=115 Identities=44% Similarity=0.707 Sum_probs=109.7
Q ss_pred hHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCC-cchHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHhh
Q psy10901 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNI 87 (137)
Q Consensus 9 sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~-~~~~~~a~~I~~~yi~~~s~~eini~~~~r~~i~~~~ 87 (137)
+|++||.||.|+.+|++||+.++|.|+|.||++|++|+.... .++...|..||++||.++||.++|||+.+++.+...+
T Consensus 1 ~l~~il~d~~~~~~F~~fl~~~~~~e~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~yi~~~s~~~~ni~~~~~~~i~~~~ 80 (118)
T smart00315 1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSPNAPKEVNLDSDLREKIEENL 80 (118)
T ss_pred CHHHHhcChHHHHHHHHHHHHhcchHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCceeCCHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999987 7799999999999999999999999999999999998
Q ss_pred cC--CCHHHHHHHHHHHHHHhhcCcccchhccHHHHHH
Q psy10901 88 EN--PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123 (137)
Q Consensus 88 ~~--~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~ 123 (137)
+. |++++|++|+.+|+..|+.+.||+|+.|+.|.++
T Consensus 81 ~~~~~~~~~F~~~~~~v~~~l~~~~~~~F~~S~~y~~~ 118 (118)
T smart00315 81 ESEEPPPDLFDEAQEEVYELLEKDSFPRFLESDYYLRF 118 (118)
T ss_pred hcCCCChHHHHHHHHHHHHHHhcCchHHHhCCHhhccC
Confidence 86 8899999999999999999999999999999763
No 2
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=99.95 E-value=4.9e-28 Score=160.64 Aligned_cols=115 Identities=32% Similarity=0.630 Sum_probs=108.9
Q ss_pred hHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCC-CcchHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHhh
Q psy10901 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNI 87 (137)
Q Consensus 9 sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~-~~~~~~~a~~I~~~yi~~~s~~eini~~~~r~~i~~~~ 87 (137)
||++||.||.++.+|++||++++|.++|.||++|+.|++.. ...+...|..||++||+++||.++||+..+++.+...+
T Consensus 1 s~~~il~~~~~~~~F~~Fl~~~~~~~~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~fi~~~s~~~l~i~~~~~~~~~~~~ 80 (118)
T PF00615_consen 1 SFEKILEDPEGLELFKEFLEKENCEENLQFWLEVEEFKSSESEEQRKKLAQQIYNKFISPGSPNELNIPSKIRKEVQDAL 80 (118)
T ss_dssp -HHHHHHSHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHTSTTSTTCCSSTHHHHHHHHHHH
T ss_pred CHHHHHCChHHHHHHHHHHhHCCCHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999994 45688899999999999999999999999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHhhcCcccchhccHHHHHH
Q psy10901 88 EN--PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123 (137)
Q Consensus 88 ~~--~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~ 123 (137)
.. |.+++|+.|+.+|+..|+.++||+|++|+.|.++
T Consensus 81 ~~~~~~~~~f~~a~~~v~~~L~~~~~~~F~~S~~y~~~ 118 (118)
T PF00615_consen 81 ENAPPSPDLFDEAQEEVYEMLEEDWFPKFLKSEEYKQF 118 (118)
T ss_dssp TSTSTTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhhchHHhHccCHhhhcC
Confidence 87 8999999999999999999999999999999876
No 3
>KOG3589|consensus
Probab=99.95 E-value=3.6e-27 Score=174.53 Aligned_cols=126 Identities=47% Similarity=0.730 Sum_probs=120.8
Q ss_pred cchhhhHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCC---cchHHHHHHHHHhccCCCCCCCCCCChHHH
Q psy10901 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL---ADVPAKAEEIWSEFLAVDASCPINVDSRSH 80 (137)
Q Consensus 4 ~~~~~sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~---~~~~~~a~~I~~~yi~~~s~~eini~~~~r 80 (137)
.+|..+|+.++.|+.|+..|..||+.++++||+.||.+|++|++... ..+...|..||++|++++||++|||+..+|
T Consensus 75 ~~w~~sf~~L~~~~~G~~~F~~fLk~e~Seeni~FW~ace~~k~~~~~~~~~~~~~a~~i~~~f~~~~ap~~vn~d~~tr 154 (221)
T KOG3589|consen 75 ESWAKSFEKLLADEAGRAVFAEFLKSEFSEENLEFWLACEEFKKRRSEKSTKMSEKAKEIYEEFSAPAAPKEVNLDSKTR 154 (221)
T ss_pred HHHHHhHHHHhhChhhHHHHHHHHHHHhhHhHHHHHHHHHHHHhCcCchhhhhhHHHHHHHHHHhccCCCCCCCCchHHH
Confidence 47999999999999999999999999999999999999999999975 568899999999999999999999999999
Q ss_pred HHHHHhhcCCC--HHHHHHHHHHHHHHhhcCcccchhccHHHHHHHhccCC
Q psy10901 81 ELTRKNIENPT--RWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKK 129 (137)
Q Consensus 81 ~~i~~~~~~~~--~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~l~~~~~ 129 (137)
..+..++.+|+ +.+|+.||.+|+.+|+.|+||||++|+.|.+++.....
T Consensus 155 e~~~~~l~~p~~~~~~f~~Aq~~i~~lm~~dsy~RFl~s~~y~~l~~~~~~ 205 (221)
T KOG3589|consen 155 ELTNRNLSEPSGQRTCFDEAQKHVYTLMEKDSYPRFLRSPLYLDLLKQPKK 205 (221)
T ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHhcccCCCccccCCHHHHHHHHHhhc
Confidence 99999999999 99999999999999999999999999999999988875
No 4
>KOG3590|consensus
Probab=99.63 E-value=5.3e-16 Score=121.77 Aligned_cols=122 Identities=20% Similarity=0.346 Sum_probs=106.9
Q ss_pred cchhhhHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCC-----------C------------c----ch---
Q psy10901 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-----------L------------A----DV--- 53 (137)
Q Consensus 4 ~~~~~sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~-----------~------------~----~~--- 53 (137)
.+-..+|+.||.||+.+.||.+||........+.||++||.||+.. + . ++
T Consensus 109 s~Ls~~L~~il~D~~~LSYFiQYLD~r~~L~LIKFwl~~E~FKs~~~~Qi~aep~~p~~k~~~~~s~~~ddk~aqELKt~ 188 (602)
T KOG3590|consen 109 SSLSKTLEQVLHDTIVLSYFIQYLDLRRMLHLIKFWLEAESFKSTTWSQIRAEPVSPSKKHETTASFLTDDKRAQELKTH 188 (602)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHHHhHHHHHHHHHhhhhhhHHHHHHHhhccCCCchhhcccccccccchhhHHHHhh
Confidence 3456789999999999999999999999999999999999999862 0 0 00
Q ss_pred --------------------------------------------HHHHHHHHHhccCCCCCCCCCCChHHHHHHHHhhcC
Q psy10901 54 --------------------------------------------PAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIEN 89 (137)
Q Consensus 54 --------------------------------------------~~~a~~I~~~yi~~~s~~eini~~~~r~~i~~~~~~ 89 (137)
-..|..||.+||.+++..+|.|+..+++.|...++.
T Consensus 189 ~~~s~r~~~~~~~~~~i~~et~~~~~~~~~~s~~~~aspL~~~s~~dai~~~~ky~~~~a~~~i~~~~~~~~~i~~~~cg 268 (602)
T KOG3590|consen 189 SEHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKDAVNTFTKYISPDAAKPIPITEAMRNDIIARICG 268 (602)
T ss_pred hhhhhcccccccccchhhhhhhhhhccccccccccccchhhhhcchhhhhhhhhhcccccccCccchHHHHhhHHHHHhc
Confidence 146889999999999999999999999999999974
Q ss_pred ----CCHHHHHHHHHHHHHHhhcCcccchhccHHHHHHHh
Q psy10901 90 ----PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125 (137)
Q Consensus 90 ----~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~l~ 125 (137)
.+++.||+||..|+..|+.|+|..|+.|..|-.+.-
T Consensus 269 ~d~~i~~~CFDEAq~~v~~~~e~Dhf~~fl~s~h~~~y~L 308 (602)
T KOG3590|consen 269 EDGQVDPNCFDEAQSIVFSAMEQDHFSEFLRSHHFCKYQL 308 (602)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccceee
Confidence 478999999999999999999999999998876643
No 5
>KOG3590|consensus
Probab=99.59 E-value=3.2e-15 Score=117.45 Aligned_cols=123 Identities=19% Similarity=0.344 Sum_probs=113.2
Q ss_pred hhHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCC--------cchHHHHHHHHHhccCCCCCCCCCCChHH
Q psy10901 8 SSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL--------ADVPAKAEEIWSEFLAVDASCPINVDSRS 79 (137)
Q Consensus 8 ~sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~--------~~~~~~a~~I~~~yi~~~s~~eini~~~~ 79 (137)
.++.+||.....+-+|.+||+++...+.|+||+.+..|++.-. .+.+..|+-||++|++-.|.+.+.++..+
T Consensus 316 v~laDiL~~e~aLfyF~Ey~e~~~~~~~lqFwl~adnF~~~la~~E~~~d~~eAq~DAMilYdKYFSlQat~~l~~~~~~ 395 (602)
T KOG3590|consen 316 VYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLAAKEGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVV 395 (602)
T ss_pred EeHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHhhhhcccccchhhhhcchhHHHHHHhhhhccCccchhHHH
Confidence 5789999999999999999999999999999999999998631 24567899999999999999999999999
Q ss_pred HHHHHHhhcC---CCHHHHHHHHHHHHHHhhcCcccchhccHHHHHHHhccCCC
Q psy10901 80 HELTRKNIEN---PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKK 130 (137)
Q Consensus 80 r~~i~~~~~~---~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~l~~~~~~ 130 (137)
|..++..|+. |.+..|+.|...+...|+..++|.|++|.+|.++++++..+
T Consensus 396 RlevEs~IC~e~gp~~~AF~tAl~~~~~~Le~KYl~DFLKs~~y~NYlnEL~~~ 449 (602)
T KOG3590|consen 396 RLEIESNICREGGPLPNAFTTALRQAWTTLEKKYLPDFLKSNLYYNYLNELIHS 449 (602)
T ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999985 67899999999999999999999999999999999998763
No 6
>KOG0986|consensus
Probab=99.32 E-value=1.7e-11 Score=98.03 Aligned_cols=119 Identities=20% Similarity=0.365 Sum_probs=102.7
Q ss_pred hhhHHHHhc-ChhhHHHHHHHHHhh-cchhhHHHHHHHHhhcCCCCcchHHHHHHHHHhccCCCCCCCC-CCC-hHHHHH
Q psy10901 7 ASSFRELLK-DPLGRDHFTKFLDKE-FSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPI-NVD-SRSHEL 82 (137)
Q Consensus 7 ~~sl~~iL~-~p~~~~~F~~Fl~~~-~~~e~l~F~~~ve~fk~~~~~~~~~~a~~I~~~yi~~~s~~ei-ni~-~~~r~~ 82 (137)
..+++.|.. +|+|+.+|++||.+. .....+.||++|++|...+++++...+..|++.||....+..+ +.+ ..+...
T Consensus 50 e~~f~sl~~~QpIGrlLFr~Fc~~~~~~~~~i~Fl~~v~eYE~~~~~~r~~~~~~i~~~~l~~~~~~~~~~~s~~~~v~~ 129 (591)
T KOG0986|consen 50 ELTFESLCEKQPIGRLLFRDFCENRPELRPAIEFLEEVKEYEKADDDERKDKARQILDAYLMKELLACLPQFSSKDLVTH 129 (591)
T ss_pred cccHHHHhccCcHHHHHHHHHHhcCchhhhHHHHHHHHHHHhcCCcccchhhHHHHHHHHhhccccccCCCcchhhhhHH
Confidence 346788877 999999999999974 4448899999999999999888999999999999997765554 555 667777
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHHhhcCcccchhccHHHHHHHh
Q psy10901 83 TRKNIEN-PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125 (137)
Q Consensus 83 i~~~~~~-~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~l~ 125 (137)
+...+.+ |.+++|.+..+.+...|..+.|..|+.|..|.++++
T Consensus 130 ~~~~l~~~~~~~lf~~~~~~~~~~L~~~pF~~f~~S~yf~rFlQ 173 (591)
T KOG0986|consen 130 VQEHLLEKPPKDLFQPLARAICAYLRGDPFQEFLESDYFTRFLQ 173 (591)
T ss_pred HhhhccccCchhhhHHHHHHHHHHhccchHhHhHHHHHHHHHHH
Confidence 7777754 789999999999999999999999999999999986
No 7
>PF09128 RGS-like: Regulator of G protein signalling-like domain; InterPro: IPR015212 This entry represents a domain consisting of twelve helices that fold into a compact structure that contains the overall structural scaffold observed in other regulator of G protein signalling (RGS) proteins and three additional helical elements that pack closely to it. Helices 1-9 comprise the RGS fold, in which helices 4-7 form a classic antiparallel bundle adjacent to the other helices. Like other RGS structures, helices 7 and 8 span the length of the folded domain and form essentially one continuous helix with a kink in the middle. Helices 10-12 form an apparently stable C-terminal extension of the structural domain, and although other RGS proteins lack this structure, these elements are intimately associated with the rest of the structural framework by hydrophobic interactions. This domain binds to active G-alpha proteins, promoting GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. ; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0005737 cytoplasm; PDB: 3CX6_B 3CX8_B 3CX7_B 1HTJ_F 1SHZ_C 3AB3_D 1IAP_A.
Probab=98.82 E-value=8.3e-08 Score=69.31 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=79.9
Q ss_pred hhHHHHhcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCCcchHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHh-
Q psy10901 8 SSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKN- 86 (137)
Q Consensus 8 ~sl~~iL~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~~~~~~~a~~I~~~yi~~~s~~eini~~~~r~~i~~~- 86 (137)
-+++.+...|..+..|..|+-++.....|.||+-.+-|+....++....|..|+.+|+.++||..|++|..+...+...
T Consensus 6 ~sl~~Lk~rPaHlaVFl~yv~sq~dP~~LLfyL~~d~yk~~~~Ke~rk~~~ei~stFL~~~ApL~v~v~~~v~~ei~~~~ 85 (188)
T PF09128_consen 6 QSLELLKSRPAHLAVFLNYVLSQFDPSPLLFYLIADLYKQGNAKEMRKWAYEIHSTFLDPGAPLRVNVPESVASEIDRTR 85 (188)
T ss_dssp HSHHHHHC-HHHHHHHHHHHHHHS-SHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHTSTT-TT-----HHHHHHHTT-H
T ss_pred cCHHHHhcCcHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCHHHHHHHHHHHHHHHcCCCCCceecCCHHHHHhHHhhc
Confidence 3678888999999999999999999999999999999999888899999999999999999999999999998888322
Q ss_pred ---hc-CCCHHHHHHHHHHHHHHhhcCcccchh
Q psy10901 87 ---IE-NPTRWSFDTAAAHVYHLMKSDSYSRYL 115 (137)
Q Consensus 87 ---~~-~~~~~~F~~a~~~V~~~l~~d~fp~F~ 115 (137)
.. +.-..+|.++++.+...+. +....|.
T Consensus 86 ~~~~~~e~~r~~f~~~~~~a~~eI~-~qL~DFR 117 (188)
T PF09128_consen 86 PELIKEEILRQIFQEAQQRALPEIQ-EQLEDFR 117 (188)
T ss_dssp HHHCTTHCHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 11 1346788888887776664 2344443
No 8
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.73 E-value=19 Score=23.04 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCC-cchHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHhhc
Q psy10901 16 DPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIE 88 (137)
Q Consensus 16 ~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~-~~~~~~a~~I~~~yi~~~s~~eini~~~~r~~i~~~~~ 88 (137)
-...-.+|..+|-=+..+|+..|+.++.--..+.. .++...|+-+.+.+--..-..+-.++-.+...+...+.
T Consensus 8 ~~~Ld~l~dailtL~n~eecy~FfdDlcTinEiqslaqRlqVa~mL~eg~tY~~I~~eTGaStaTIsRVkRcl~ 81 (100)
T COG4496 8 GAALDELFDAILTLENLEECYAFFDDLCTINEIQSLAQRLQVAKMLKEGRTYRDIEDETGASTATISRVKRCLN 81 (100)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCcchhhhccCcchhhHHHHHHHHH
Confidence 34455778888888899999999998754443322 35777777777665544444455666677777777765
No 9
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=48.06 E-value=7.5 Score=26.93 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHhhcCC
Q psy10901 19 GRDHFTKFLDKEFSGENLKFWEAVQELKCL 48 (137)
Q Consensus 19 ~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~ 48 (137)
.+......|+ .+-.-+|.||.+|+.|++.
T Consensus 112 aR~~vv~CL~-~N~~rPLnCw~EVe~FKk~ 140 (142)
T PF07956_consen 112 ARSAVVRCLR-ENDGRPLNCWEEVEAFKKE 140 (142)
T ss_pred HHHHHHHHHH-HCCCCCCchHHHHHHHHHH
Confidence 3444444333 3445889999999999864
No 10
>PF11946 DUF3463: Domain of unknown function (DUF3463); InterPro: IPR022563 This functionally uncharacterised domain is found in bacteria and archaea, which is about 140 amino acids in length and is found C-terminal to PF04055 from PFAM. It contains two conserved sequence motifs: CTPWG and PCYL. This domain is associated with hopanoid biosynthesis associated radical SAM proteins.
Probab=43.85 E-value=57 Score=22.55 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcCcccchhccHHHHHHHhccC
Q psy10901 97 TAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSK 128 (137)
Q Consensus 97 ~a~~~V~~~l~~d~fp~F~~S~~y~~~l~~~~ 128 (137)
+..+.|+......-|| |..|+.|.++|...+
T Consensus 26 ~lfr~i~~~~~~k~w~-f~~SplyLdfL~G~~ 56 (138)
T PF11946_consen 26 ELFRKIFAKGKKKKWR-FNHSPLYLDFLAGNR 56 (138)
T ss_pred HHHHHHHHhcccCCcc-ccCCHHHHHHHcCCC
Confidence 3344455344456676 999999999998743
No 11
>COG4790 EscR Type III secretory pathway, component EscR [Intracellular trafficking and secretion]
Probab=37.36 E-value=40 Score=24.74 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHhhcchhhHHHHHHHHh
Q psy10901 16 DPLGRDHFTKFLDKEFSGENLKFWEAVQE 44 (137)
Q Consensus 16 ~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~ 44 (137)
+..++.=+|+||++...+|...|+++..+
T Consensus 92 ~~~~l~pyR~fL~k~t~~~~~~FF~~~~~ 120 (214)
T COG4790 92 DDKGLSPYRDFLKKNTEEEEVSFFERSAQ 120 (214)
T ss_pred HHhhhhHHHHHHHHhCcHHHHHHHHHHHH
Confidence 35788999999999999999999988753
No 12
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.49 E-value=28 Score=17.79 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=10.7
Q ss_pred HHHHHHHHhccCC
Q psy10901 55 AKAEEIWSEFLAV 67 (137)
Q Consensus 55 ~~a~~I~~~yi~~ 67 (137)
+.|+.||++|+..
T Consensus 4 dRAR~IyeR~v~~ 16 (32)
T PF02184_consen 4 DRARSIYERFVLV 16 (32)
T ss_pred HHHHHHHHHHHHh
Confidence 5689999999964
No 13
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=32.25 E-value=98 Score=20.18 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHhhc
Q psy10901 37 KFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCPINVDSRSHELTRKNIE 88 (137)
Q Consensus 37 ~F~~~ve~fk~~~~~~~~~~a~~I~~~yi~~~s~~eini~~~~r~~i~~~~~ 88 (137)
.||..+++.-...+-.......+||+. .+...|+++.+|-.+...++
T Consensus 34 ~FW~~L~eIA~~r~lt~a~LIaei~d~-----r~~~~NlsSaLRV~clr~L~ 80 (102)
T COG4321 34 PFWDILKEIAERRKLTVAALIAEIDDE-----RGRDGNLSSALRVCCLRWLK 80 (102)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhc-----CCccccHHHHHHHHHHHHHH
Confidence 488888877666555567778889988 45567999999988876664
No 14
>KOG2074|consensus
Probab=31.68 E-value=79 Score=26.66 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=63.0
Q ss_pred cChhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCCcchHHHHHHHHHhccCCCCC-------CCCCCChHHHHHHHHhh
Q psy10901 15 KDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDAS-------CPINVDSRSHELTRKNI 87 (137)
Q Consensus 15 ~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~~~~~~~a~~I~~~yi~~~s~-------~eini~~~~r~~i~~~~ 87 (137)
.||.+.++|+++..+..-. +=+||-.--..-.......-..-..||..|++.=-| ..+|+.++++..|=..
T Consensus 125 en~~L~kl~ke~V~s~~ls-~eeFWStrl~ll~~~a~~tS~QqvGi~~a~Ls~IkP~t~~~N~v~~NLt~eiI~~IF~~- 202 (548)
T KOG2074|consen 125 ENPVLFKLYKELVVSKVLS-PEEFWSTRLNLLRADASSTSNQQVGIYNAVLSTIKPQTDGCNGVKVNLTSEIIEQIFET- 202 (548)
T ss_pred cCHHHHHHHHHHHHhcCCC-HHHHHHHHhhhhhhhhcccchhhcChhHHHhhccccccCCCCceeeecCHHHHHHHHHh-
Confidence 4899999999998876543 448995543332222111222445788888863222 2357777765444222
Q ss_pred cCCCHHHHHHHHHHHHHHh-hcCcccchhccHHHHHHHhccCC
Q psy10901 88 ENPTRWSFDTAAAHVYHLM-KSDSYSRYLRSDIYRDFLNGSKK 129 (137)
Q Consensus 88 ~~~~~~~F~~a~~~V~~~l-~~d~fp~F~~S~~y~~~l~~~~~ 129 (137)
.|.+=..-.+.|=..| +.++|.||-.|.+|.+.-.....
T Consensus 203 ---yPaVkk~y~e~VP~nmtE~eFWtrFFqS~yf~r~R~~~i~ 242 (548)
T KOG2074|consen 203 ---YPAVKKKYAENVPHNMTEKEFWTRFFQSHYFHRLRGNTIS 242 (548)
T ss_pred ---ChHHHHHHHhhCCccccchhHHHHHHHHHHHHHHhcccCC
Confidence 1221111122333333 56899999999999887655433
No 15
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=29.68 E-value=47 Score=21.55 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=31.3
Q ss_pred hcChhhHHHHHHHHHhhcchhhHHHHHHHHhhcC-CCCcchHHHHHHHHHhccC-CCCCC
Q psy10901 14 LKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKC-LPLADVPAKAEEIWSEFLA-VDASC 71 (137)
Q Consensus 14 L~~p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~-~~~~~~~~~a~~I~~~yi~-~~s~~ 71 (137)
+.||.....|.+||.+++-.--+.= ..-..+.- +.+++-...|+...+.|+. |+.|+
T Consensus 7 ~~n~r~AqaF~DYl~sqgI~~~i~~-~~~~~~~lwl~de~~~~~a~~el~~Fl~nP~~~r 65 (101)
T PF12122_consen 7 LNNPRAAQAFIDYLASQGIELQIEP-EGQGQFALWLHDEEHLEQAEQELEEFLQNPNDPR 65 (101)
T ss_dssp ESSHHHHHHHHHHHHHTT--EEEE--SSSE--EEEES-GGGHHHHHHHHHHHHHS-SS--
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEE-CCCCceEEEEeCHHHHHHHHHHHHHHHHCCCCHH
Confidence 6799999999999998863211100 00000100 0134567889999999994 55443
No 16
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=29.09 E-value=2.3e+02 Score=20.57 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCcccchhccHHHHHHHhccC
Q psy10901 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSK 128 (137)
Q Consensus 72 eini~~~~r~~i~~~~~~~~~~~F~~a~~~V~~~l~~d~fp~F~~S~~y~~~l~~~~ 128 (137)
.-.|.+++...|...+..-+..-+...+..|-.-|....= +...++..+|+.+.
T Consensus 125 ~~~ih~sV~~dI~~il~gKs~~eL~~Le~qI~~KL~s~~~---~Dv~YWE~lL~~L~ 178 (191)
T PF10312_consen 125 RSGIHSSVAADIQKILSGKSYEELEELEQQIKAKLRSGEA---IDVEYWESLLKQLK 178 (191)
T ss_pred hhcccHHHHHHHHHHHccCCHHHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHHH
Confidence 3467788888888888888888899999999988864322 77777777776553
No 17
>PF15182 OTOS: Otospiralin
Probab=25.07 E-value=82 Score=18.81 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=24.3
Q ss_pred hHHHHHHHHhhcCCCC-cchHHHHHHHHHhcc
Q psy10901 35 NLKFWEAVQELKCLPL-ADVPAKAEEIWSEFL 65 (137)
Q Consensus 35 ~l~F~~~ve~fk~~~~-~~~~~~a~~I~~~yi 65 (137)
.-+||.=||-|+.+.. .++.++|+..+..|=
T Consensus 24 tsDFW~YveyFrtlGAY~~indmARtfFAh~p 55 (69)
T PF15182_consen 24 TSDFWNYVEYFRTLGAYNQINDMARTFFAHFP 55 (69)
T ss_pred chHHHHHHHHHHHhccHHHHHHHHHHHHhhCc
Confidence 3589999999999864 467888888777664
No 18
>KOG1915|consensus
Probab=24.08 E-value=1.9e+02 Score=24.73 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=34.0
Q ss_pred hHHHHhcC-hhhHHHHHHHHHhhcchhhHHHHHHHHhhcCCCCcchHHHHHHHHHhccC
Q psy10901 9 SFRELLKD-PLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66 (137)
Q Consensus 9 sl~~iL~~-p~~~~~F~~Fl~~~~~~e~l~F~~~ve~fk~~~~~~~~~~a~~I~~~yi~ 66 (137)
.+.++|.| +..++.|..+|.-+-.. +.|...-+|..... -..-|+.||++|+.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~e---qaW~sfI~fElRyk--eieraR~IYerfV~ 202 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDE---QAWLSFIKFELRYK--EIERARSIYERFVL 202 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHhh--HHHHHHHHHHHHhe
Confidence 36677887 55578888888765444 45555444443332 12568899999986
No 19
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=22.74 E-value=1.6e+02 Score=19.09 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=28.5
Q ss_pred CChHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCccc
Q psy10901 75 VDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYS 112 (137)
Q Consensus 75 i~~~~r~~i~~~~~~~~~~~F~~a~~~V~~~l~~d~fp 112 (137)
+|..++..|...+......-+++..+.|+..++.++|+
T Consensus 61 fP~~l~~piL~~v~~s~~~rld~Lv~~v~~~~k~~ff~ 98 (102)
T PF10537_consen 61 FPEELREPILRLVQFSTRSRLDDLVDDVYDFFKDRFFV 98 (102)
T ss_pred CCHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCcC
Confidence 67777777777766544456888888999888877775
No 20
>KOG2857|consensus
Probab=22.31 E-value=2.7e+02 Score=19.47 Aligned_cols=60 Identities=22% Similarity=0.165 Sum_probs=34.9
Q ss_pred hhhhHHHHhcChhhHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCCCcchHHHHHHHHHhccC
Q psy10901 6 PASSFRELLKDPLGRDHFTKFLDKEFSG----------ENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66 (137)
Q Consensus 6 ~~~sl~~iL~~p~~~~~F~~Fl~~~~~~----------e~l~F~~~ve~fk~~~~~~~~~~a~~I~~~yi~ 66 (137)
....|.++|.||..+.+...--...+-. --+.|...+.+-..- ..+-+..+..|+.+|..
T Consensus 86 ssseLrsll~dp~Lr~Li~sid~~~n~~kel~aamqeelfvefadailq~ve~-s~dee~~~~m~~~k~~~ 155 (157)
T KOG2857|consen 86 SSSELRSLLEDPHLRNLIESIDELLNIMKELVAAMQEELFVEFADAILQQVEP-SPDEEKLASMILEKYYA 155 (157)
T ss_pred chHHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHhcchHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHhc
Confidence 3456889999999888765532222211 123444444433322 23566778888888864
No 21
>PHA02335 hypothetical protein
Probab=20.03 E-value=2.8e+02 Score=18.41 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=31.2
Q ss_pred hcchhhHHHHHHHHhhcCCCC---c------chHHHHHHHHHhccCCCCCCCCCC
Q psy10901 30 EFSGENLKFWEAVQELKCLPL---A------DVPAKAEEIWSEFLAVDASCPINV 75 (137)
Q Consensus 30 ~~~~e~l~F~~~ve~fk~~~~---~------~~~~~a~~I~~~yi~~~s~~eini 75 (137)
+..++|..++ ++..|.+..+ + +|-...++.+++|...++++...|
T Consensus 5 el~~~n~m~f-Ai~~Y~np~sVt~ddf~~DlkRi~yIkrllKRy~~~~~~k~hlI 58 (118)
T PHA02335 5 ELNEGNYMLF-AIKNYNNPQSVTYDDFEEDLKRFKYIKRLFKRYLNTGELKTHLI 58 (118)
T ss_pred cCCchhHHHH-HHHhcCCcccccHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHH
Confidence 4556777777 8888886542 1 244567788999999998754333
Done!