RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10901
(137 letters)
>gnl|CDD|188660 cd08705, RGS_R7-like, Regulator of G protein signaling (RGS) domain
found in the R7 subfamily of proteins. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the R7 (Neuronal RGS) protein
subfamily of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. The R7 subfamily
includes RGS6, RGS7, RGS9, and RGS11, all of which, in
humans, are expressed predominantly in the nervous
system, form an obligatory complex with G-beta-5, and
play important roles in the regulation of crucial
neuronal processes. In addition, R7 proteins were found
to bind many other proteins outside of the G protein
signaling pathways including: m-opioid receptor,
beta-arrestin, alpha-actinin-2, NMDAR, polycystin,
spinophilin, guanylyl cyclase, among others.
Length = 121
Score = 196 bits (500), Expect = 3e-66
Identities = 68/114 (59%), Positives = 89/114 (78%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVD 68
SF ELLKDP+GR+ F KFL+KEFSGENL+FWEA Q+LK P + VP K +EI+ EFLA
Sbjct: 8 SFSELLKDPVGREQFLKFLEKEFSGENLRFWEACQDLKYGPQSQVPEKVQEIYQEFLAPG 67
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
A IN+DS++ E+T KN+++P R++FD A H+Y LMK DSY R+LRSDIY++
Sbjct: 68 APSWINIDSKTMEITLKNLKDPHRYTFDAAQEHIYMLMKKDSYPRFLRSDIYKE 121
>gnl|CDD|188691 cd08737, RGS_RGS6, Regulator of G protein signaling (RGS) domain
found in the RGS6 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS6 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). Other members of the R7 subfamily
(Neuronal RGS) include: RGS7, RGS9, and RGS11, all of
which are expressed predominantly in the nervous system,
form an obligatory complex with G-beta-5, and play
important roles in the regulation of crucial neuronal
processes such as vision and motor control.
Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. RGS6 exists in multiple splice
isoforms with identical RGS domains, but possess
complete or incomplete GGL domains and distinct N- and
C-terminal domains. RGS6 interacts with SCG10, a
neuronal growth-associated protein and therefore
regulates neuronal differentiation. Another RGS6-binding
protein is DMAP1, a component of the Dnmt1 complex
involved in repression of newly replicated genes.
Mutations of a critical residue required for interaction
of RGS6 protein with G proteins did not affect the
ability of RGS6 to interact with both SCG10 and DMAP1.
As a major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis.
Length = 125
Score = 144 bits (363), Expect = 2e-45
Identities = 66/116 (56%), Positives = 87/116 (75%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVD 68
S E+LKDP+GRD F +FL+ EFS ENL+FW AVQ+LK PL DV + EEIW EFLA
Sbjct: 9 SLDEVLKDPVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEIWQEFLAPG 68
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFL 124
A IN+DS S+E T +N+++P R++F+ A H+Y LMKSDSY+R+LRS+ Y+D L
Sbjct: 69 APSAINLDSHSYEKTSQNVKDPGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLL 124
>gnl|CDD|188692 cd08738, RGS_RGS7, Regulator of G protein signaling (RGS) domain
found in the RGS7 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS7 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. Other members of the R7 subfamily
(Neuronal RGS) include: RGS6, RGS9, and RGS11, all of
which are expressed predominantly in the nervous system,
form an obligatory complex with G-beta-5, and play
important roles in the regulation of crucial neuronal
processes such as vision and motor control.
Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. R7 RGS proteins are key modulators
of the pharmacological effects of drugs involved in the
development of tolerance and addiction. In addition,
RGS7 was found to bind a component of the synaptic
fusion complex, snapin, and some other proteins outside
of G protein signaling pathways.
Length = 121
Score = 131 bits (331), Expect = 1e-40
Identities = 58/111 (52%), Positives = 85/111 (76%)
Query: 12 ELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASC 71
E LKDP+GR+ F KFL+ EFS ENL+FW AV++LK P+ +VP++ +EIW EFLA A
Sbjct: 11 EALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPS 70
Query: 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
IN+DS+S++ T +N+++P R++F+ A H+Y LMKSDSY R++RS Y++
Sbjct: 71 AINLDSKSYDKTTQNVKDPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQE 121
>gnl|CDD|188694 cd08740, RGS_RGS11, Regulator of G protein signaling (RGS) domain
found in the RGS11 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS11 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. Other members of
the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and
RGS9, all of which are expressed predominantly in the
nervous system, form an obligatory complex with
G-beta-5, and play important roles in the regulation of
crucial neuronal processes such as vision and motor
control. Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. RGS11 is expressed exclusively in
retinal ON-bipolar neurons in which it forms complexes
with G-beta-5 and R7AP (RGS7 anchor protein ) and
plays crucial roles in processing the light responses of
retinal neurons.
Length = 126
Score = 126 bits (319), Expect = 1e-38
Identities = 54/116 (46%), Positives = 79/116 (68%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVD 68
SFRELL DP+GR F FL+KEFS ENL FWEA +EL+ + +P + ++ +FLA
Sbjct: 9 SFRELLNDPVGRKEFLDFLEKEFSAENLSFWEACEELRYGEQSKIPELVDSVYQQFLAPG 68
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFL 124
A+ +N+DS++ E T + ++ P R+ D A H+Y LMK DSY R+L+SD+Y++ L
Sbjct: 69 ATRWVNIDSKTMERTLEGLKQPHRYVLDDAQMHIYMLMKKDSYPRFLKSDLYKNLL 124
>gnl|CDD|216023 pfam00615, RGS, Regulator of G protein signaling domain. RGS
family members are GTPase-activating proteins for
heterotrimeric G-protein alpha-subunits.
Length = 117
Score = 125 bits (317), Expect = 2e-38
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFLAV 67
SF LL D GR F +FL+ EFS ENL+FW A +E K + KA EI+++FLA
Sbjct: 1 SFESLLSDQPGRRLFREFLESEFSEENLEFWLACEEFKKAKSDEERLKKAREIYNKFLAP 60
Query: 68 DASCPINVDSRSHELTRKNIEN-PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
D+ IN+DS + E +N+E P+ FD A VY LM+ DSY R+L+S +Y
Sbjct: 61 DSPSEINLDSDTREKIEENLEKQPSPDLFDEAQEEVYDLMEKDSYPRFLKSPLYLRL 117
>gnl|CDD|214613 smart00315, RGS, Regulator of G protein signalling domain. RGS
family members are GTPase-activating proteins for
heterotrimeric G-protein alpha-subunits.
Length = 118
Score = 125 bits (317), Expect = 2e-38
Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWSEFLAV 67
S LL DP+GR F +FL+ EFS ENL+FW AV+E K + AKA EI+ +FL+
Sbjct: 1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSP 60
Query: 68 DASCPINVDSRSHELTRKNIEN--PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
+A +N+DS E +N+E+ P FD A VY L++ DS+ R+L SD Y F
Sbjct: 61 NAPKEVNLDSDLREKIEENLESEEPPPDLFDEAQREVYELLEKDSFPRFLESDYYLRF 118
>gnl|CDD|188693 cd08739, RGS_RGS9, Regulator of G protein signaling (RGS) domain
found in the RGS9 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS9 protein, a member of R7 subfamily of the RGS
protein family. RGS is a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. Other members of
the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and
RGS11, all of which are expressed predominantly in the
nervous system, form an obligatory complex with
G-beta-5, and play important roles in the regulation of
crucial neuronal processes such as vision and motor
control. Additionally they have been implicated in many
neurological conditions such as anxiety, schizophrenia,
and drug dependence. RGS9 forms constitutive complexes
with G-beta-5 subunit and controls such fundamental
functions as vision and behavior. RGS9 exists in two
splice isoforms: RGS9-1 which regulates
phototransduction in rods and cones and RGS9-2 which
regulates dopamine and opioid signaling in the basal
ganglia. In addition, RGS9 was found to bind many other
proteins outside of G protein signaling pathways
including: mu-opioid receptor, beta-arrestin,
alpha-actinin-2, NMDAR, polycystin, spinophilin, and
guanylyl cyclase, among others.
Length = 121
Score = 117 bits (293), Expect = 7e-35
Identities = 58/116 (50%), Positives = 79/116 (68%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
A +F EL++DP GR F FL KEFSGENL FWEA ++LK + V KAEEI+ FLA
Sbjct: 6 AFNFSELIRDPKGRQSFQLFLKKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLA 65
Query: 67 VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
A IN+D ++ ++T K +++P R+ D A H+Y LMK DSY+RYL+S IY++
Sbjct: 66 PGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKE 121
>gnl|CDD|188661 cd08706, RGS_R12-like, Regulator of G protein signaling (RGS)
domain found in the R12 subfamily of proteins. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the R12 (Neuronal RGS) protein
subfamily of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play a critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits.
Deactivation of G-protein signaling, controlled by RGS
domain, accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP that results in
reassociation of the alpha-subunit with the
beta-gamma-dimer and thereby inhibition of downstream
activity. As a major G-protein regulator, RGS domain
containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. The R12 RGS
subfamily includes RGS10, RGS12 and RGS14 all of which
are highly selective for G-alpha-i1 over G-alpha-q.
Length = 113
Score = 110 bits (277), Expect = 2e-32
Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 10 FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWSEFLAVD 68
F LL+DP+G +FT+FL KEFS EN+ FW+A ++ K +P + +A EI+ FL+
Sbjct: 1 FERLLQDPVGVKYFTEFLKKEFSEENILFWQACEKFKKIPDKKQLVQEAREIYDTFLSSK 60
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
AS P+N+DS++ L + +E P F +++LMK DSYSR+L+S +Y+
Sbjct: 61 ASSPVNIDSQAQ-LAEEMLEEPHPDMFQKQQLQIFNLMKFDSYSRFLKSPLYQQ 113
>gnl|CDD|188668 cd08713, RGS_RGS3, Regulator of G protein signaling (RGS) domain
found in the RGS3 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS3 protein. RGS3 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha subunits. The RGS
domain controls G-protein signaling by accelerating the
GTPase activity of the G-alpha subunit which leads to G
protein deactivation and promotes desensitization. As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular
processes. RGS3 induces apoptosis when overexpressed and
is involved in cell migration through interaction with
the Ephrin receptor. RGS3 exits as several splice
isoforms and interacts with neuroligin, estrogen
receptor-alpha, and 14-3-3 outside of the GPCR pathways.
Length = 114
Score = 95.3 bits (237), Expect = 2e-26
Identities = 47/111 (42%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 13 LLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCL-PLADVPAKAEEIWSEFLAVDASC 71
LL G F FL EFS ENL+FW A +E K + + + ++A++I++E++A+ +
Sbjct: 4 LLLHKYGLAVFRAFLQTEFSEENLEFWLACEEYKKIKSQSKMASRAKKIFAEYIAIQSCK 63
Query: 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+N+DS + E T++N++NPTR FD A +Y LM+ DSY R+LRSD+Y+D
Sbjct: 64 EVNLDSYTREHTKENLQNPTRGCFDLAQKRIYGLMEKDSYPRFLRSDLYQD 114
>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain
superfamily. The RGS domain is an essential part of the
Regulator of G-protein Signaling (RGS) protein family, a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. While
inactive, G-alpha-subunits bind GDP, which is released
and replaced by GTP upon agonist activation. GTP binding
leads to dissociation of the alpha-subunit and the
beta-gamma-dimer, allowing them to interact with
effectors molecules and propagate signaling cascades
associated with cellular growth, survival, migration,
and invasion. Deactivation of the G-protein signaling
controlled by the RGS domain accelerates GTPase activity
of the alpha subunit by hydrolysis of GTP to GDP, which
results in the reassociation of the alpha-subunit with
the beta-gamma-dimer and thereby inhibition of
downstream activity. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins are
also involved in apoptosis and cell proliferation, as
well as modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play important roles in neuronal signals modulation.
Some RGS proteins are principal elements needed for
proper vision.
Length = 113
Score = 94.4 bits (235), Expect = 4e-26
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 14 LKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD--VPAKAEEIWSEFLAVDASC 71
L+DP G ++F +FL E ENL+FW AV++ K +D + +KA+EI+ ++++ DA
Sbjct: 1 LRDPYGLEYFRQFLKSEHCEENLEFWLAVEKFKKTTSSDEELKSKAKEIYDKYISKDAPK 60
Query: 72 PINVDSRSHELTRKNIENP--TRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
IN+ E +N+E P FD A H+ +L++ DSY R+L+SD+Y
Sbjct: 61 EINIPESIREEIEENLEEPYPDPDCFDEAQEHILNLLEKDSYPRFLKSDLYLK 113
>gnl|CDD|188697 cd08743, RGS_RGS14, Regulator of G protein signaling (RGS) domain
found in the RGS14 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS14
protein. RGS14 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS14 belong to the R12 RGS subfamily,
which includes RGS10 and RGS12, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS14 binds
and regulates the subcellular localization and
activities of H-Ras and Raf kinases in cells and
thereby integrates G protein and Ras/Raf signaling
pathways.
Length = 129
Score = 93.6 bits (232), Expect = 1e-25
Identities = 46/121 (38%), Positives = 76/121 (62%), Gaps = 4/121 (3%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEE---IWSE 63
A SF LL+DPLG ++FT+FL KEFS EN+ FW+A + + +P +D A+E I++E
Sbjct: 8 AVSFERLLQDPLGVEYFTEFLKKEFSAENVNFWKACERFQQIPASDTQQLAQEARKIYNE 67
Query: 64 FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
FL+ + P+N+D + + + P+ F +++LMK DSY+R+++S +Y+D
Sbjct: 68 FLSSSSQSPVNID-QQAWIGEDMLATPSPDMFRAQQLQIFNLMKFDSYARFVKSPLYQDC 126
Query: 124 L 124
L
Sbjct: 127 L 127
>gnl|CDD|188667 cd08712, RGS_RGS18, Regulator of G protein signaling (RGS) domain
found in the RGS18 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS18 protein. RGS18 is a member of the RGS protein
family, a diverse group of multifunctional proteins that
regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G-alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS18 is a member
of the R4/RGS subfamily and is expressed predominantly
in osteoclasts where it acts as a negative regulator of
the acidosis-induced osteoclastogenic OGR1/NFAT
signaling pathway. RANKL (receptor activator of nuclear
factor B ligand) stimulates osteoclastogenesis by
inhibiting expression of RGS18.
Length = 114
Score = 92.3 bits (229), Expect = 3e-25
Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 10 FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD-VPAKAEEIWSEFLAVD 68
F +LL G + FT+FL EFS EN++FW A ++ K + KA+ I+ +F+ D
Sbjct: 1 FDKLLSHKDGLEAFTRFLKTEFSEENIEFWIACEDYKKSKTPQQIHLKAKAIYEKFIQTD 60
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
A +N+D + E+T +IE PT SFD A + VY LM+ DSY R+L+SDIY D
Sbjct: 61 APKEVNLDFHTKEVTTNSIEQPTLTSFDAAQSRVYQLMEQDSYPRFLKSDIYLD 114
>gnl|CDD|188670 cd08715, RGS_RGS1, Regulator of G protein signaling (RGS) domain
found in the RGS1 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS1 protein. RGS1 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS 1 is expressed predominantly in
hematopoietic compartments, including T and B
lymphocytes, and may play a major role in
chemokine-mediated homing of lymphocytes to secondary
lymphoid organs. In addition, RGS1 interacts with
calmodulin and 14-3-3 protein outside of the GPCR
pathway.
Length = 114
Score = 90.8 bits (225), Expect = 9e-25
Identities = 50/109 (45%), Positives = 68/109 (62%)
Query: 12 ELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASC 71
+LL G++ F FL EFS EN++FW A ++ K +P KAEEI+ EF+ DA+
Sbjct: 3 KLLASQTGQNVFRSFLKSEFSEENIEFWLACEDYKKTESDLLPCKAEEIYKEFVQSDAAK 62
Query: 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY 120
IN+D R+ E T K I+ PT FD A +Y LM+ DSY R+L+SDIY
Sbjct: 63 QINIDFRTRESTAKKIKAPTPTCFDEAQKVIYILMERDSYPRFLKSDIY 111
>gnl|CDD|188666 cd08711, RGS_RGS8, Regulator of G protein signaling (RGS) domain
found in the RGS8 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS8 protein. RGS8 is a member of R4/RGS subfamily of
RGS family, a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G-alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS8 is involved
in G-protein-gated potassium channels regulation and
predominantly expressed in the brain. RGS8 also is
selectively expressed in the hematopoietic system (NK
cells).
Length = 125
Score = 88.3 bits (218), Expect = 1e-23
Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFL 65
A SF LL G F FL EFS ENL+FW A +E K A + +KA I+ EF+
Sbjct: 9 ADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFV 68
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
V A +N+D ++ E TRKN++ P+ FD A V+ LM+ DSY R+LRS +Y D
Sbjct: 69 DVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLD 125
>gnl|CDD|188673 cd08718, RGS_RZ-like, Regulator of G protein signaling (RGS) domain
found in the RZ protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RZ subfamily of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits.
Deactivation of G-protein signaling is controlled by RGS
domains, which accelerate GTPase activity of the alpha
subunit by hydrolysis of GTP to GDP, which results in
reassociation of the alpha-subunit with the
beta-gamma-dimer and inhibition of downstream activity.
As a major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins includes
RGS17, RGS19 (former GAIP), RGS20, and its splice
variant Ret-RGS.
Length = 118
Score = 87.1 bits (216), Expect = 3e-23
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKC-LPLADVPAKAEEIWSEFL 65
A SF +L+K P GR+ F +FL E+S EN+ FW A +ELK + KA I+ +++
Sbjct: 2 AQSFDKLMKSPAGRNVFREFLRTEYSEENMLFWLACEELKKEANKHVIEEKARLIYEDYI 61
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
++ + +++DSR E+ +N+ P+ +FD A +Y LM DSY R+L S IY+
Sbjct: 62 SILSPKEVSLDSRVREVINRNMLEPSPHTFDDAQLQIYTLMHRDSYPRFLNSAIYKS 118
>gnl|CDD|188669 cd08714, RGS_RGS4, Regulator of G protein signaling (RGS) domain
found in the RGS4 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS4 protein. RGS4 is a member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha subunits. The RGS
domain controls G-protein signaling by accelerating the
GTPase activity of the G-alpha subunit which leads to G
protein deactivation and promotes desensitization. RGS4
is expressed widely in brain including prefrontal
cortex, striatum, locus coeruleus (LC), and hippocampus
and has been implicated in regulation of opioid,
cholinergic, and serotonergic signaling. Dysfunctions in
RGS4 proteins are involved in etiology of Parkinson's
disease, addiction, and schizophrenia. RGS4 also is
up-regulated in the failing human heart. RGS4 interacts
with many binding partners outside of GPCR pathways,
including calmodulin, COP, Kir3, PIP, calcium/CaM, PA,
ErbB3, and 14-3-3.
Length = 114
Score = 86.9 bits (215), Expect = 4e-23
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 10 FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD-VPAKAEEIWSEFLAVD 68
L+ G F FL E+S EN+ FW + ++ K + KA +I+ EF++V
Sbjct: 1 LENLINHECGLAAFKAFLKSEYSEENIDFWVSCEDYKKTKSPSKLSPKARKIYEEFISVQ 60
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
A+ +N+DS + E T +N+ PT FD A ++ LM+ DSY R+L+S Y D
Sbjct: 61 ATKEVNLDSCTREETSRNMLEPTISCFDEAQKKIFTLMEKDSYRRFLKSRFYLD 114
>gnl|CDD|188699 cd08745, RGS_RGS19, Regulator of G protein signaling (RGS) domain
found in the RGS19 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS19 protein (also known as GAIP), a member of the RZ
subfamily of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of G-protein signaling is controlled by RGS domains,
which accelerate GTPase activity of the alpha subunit by
hydrolysis of GTP to GDP, resulting in a reassociation
of the alpha-subunit with the beta-gamma-dimer and an
inhibition of downstream activity. As a major G-protein
regulator, the RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins includes
RGS17, RGS20, and its splice variant Ret-RGS. RGS19
participates in regulation of dopamine receptor D2R and
D3R, as well as beta-adrenergic receptors .
Length = 118
Score = 82.4 bits (203), Expect = 2e-21
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKC-LPLADVPAKAEEIWSEFL 65
A SF +L+K P GR+ F +FL E+S EN+ FW A +ELK + KA I+ +++
Sbjct: 2 AQSFDKLMKSPAGRNVFREFLRTEYSEENMLFWLACEELKAEANKHVIDEKARLIYEDYI 61
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYR 121
++ + +++DSR E + ++ P+ +FD A +Y LM DSY R+L S IY+
Sbjct: 62 SILSPKEVSLDSRVREGINRKMQEPSSHTFDDAQLQIYTLMHRDSYPRFLNSPIYK 117
>gnl|CDD|188700 cd08746, RGS_RGS20, Regulator of G protein signaling (RGS) domain
found in the RGS20 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS20 protein (also known as RGSZ1), a member of the RZ
subfamily of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of G-protein signaling is controlled by the RGS domain,
which accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP resulting in reassociation
of the alpha-subunit with the beta-gamma-dimer and
inhibition of downstream activity. As a major G-protein
regulator, the RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. The RZ subfamily of RGS proteins include
RGS17, RGS19 (former GAIP), and the splice variant of
RGS20, Ret-RGS. RGS20 is expressed exclusively in brain,
with the highest concentrations in the temporal lobe and
the caudate nucleus and may play a role in signaling
regulation in these brain regions. RGS20 acts as a GAP
of both G-alpha-z and G-alpha-I and controls signaling
in the mu opioid receptor pathway.
Length = 167
Score = 83.5 bits (206), Expect = 2e-21
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADV-PAKAEEIWSEFL 65
SF +L+ P GR+ F +FL EFS EN+ FW A +ELK V KA I+ +++
Sbjct: 51 GQSFDKLMLTPAGRNAFREFLRTEFSEENMLFWMACEELKKEANKSVIEEKARIIYEDYI 110
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
++ + +++DSR E+ +N+ P++ +FD A +Y LM DSY R++ S IY++
Sbjct: 111 SILSPKEVSLDSRVREVINRNMLEPSQHTFDDAQLQIYTLMHRDSYPRFMNSAIYKN 167
>gnl|CDD|188678 cd08723, RGS_RGS21, Regulator of G protein signaling (RGS) domain
found in the RGS21 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part RGS21
protein, a member of RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular
processes. RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
apoptosis, and cell proliferation, as well as modulation
of cardiac development. RGS21 is a member of the R4/RGS
subfamily and its mRNA was detected only in sensory
taste cells that express sweet taste receptors and the
taste G-alpha subunit, gustducin, suggesting a potential
role in regulating taste transduction.
Length = 111
Score = 80.5 bits (198), Expect = 1e-20
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 13 LLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLA-DVPAKAEEIWSEFLAVDASC 71
LL + G D F FL EFS EN++FW A ++ K + ++ KA+ I+SEF+ DA
Sbjct: 1 LLANQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTKSSTEIALKAQMIYSEFIQADAPK 60
Query: 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
IN+D + +L +NI PT FD A + +Y LM DS+ R+L+S++Y+
Sbjct: 61 EINIDFHTRDLISQNISEPTLKCFDEAQSLIYCLMAKDSFPRFLKSEVYKK 111
>gnl|CDD|188696 cd08742, RGS_RGS12, Regulator of G protein signaling (RGS) domain
found in the RGS12 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS12
protein. RGS12 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS12 belong to the R12 RGS subfamily,
which includes RGS10 and RGS14, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS12 exist in
multiple splice variants: RGS12s (short) contains the
core RGS/RBD/GoLoco domains, while RGS12L (long) has
additional N-terminal PDZ and PTB domains. RGS12 splice
variants show distinct expression patterns, suggesting
that they have discrete functions during mouse
embryogenesis. RGS12 also may play a critical role in
coordinating Ras-dependent signals that are required for
promoting and maintaining neuronal differentiation.
Length = 115
Score = 80.5 bits (198), Expect = 1e-20
Identities = 44/116 (37%), Positives = 73/116 (62%), Gaps = 4/116 (3%)
Query: 10 FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD---VPAKAEEIWSEFLA 66
F LL+DP+G +F++FL KEFS EN+ FW+A + +P D + +A EI+S+FL
Sbjct: 1 FERLLQDPVGVRYFSEFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLC 60
Query: 67 VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
A+ P+N+DS++ +L + P F +++LMK DSY+R+L+S +Y++
Sbjct: 61 SKATTPVNIDSQA-QLADDILNAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQE 115
>gnl|CDD|188665 cd08710, RGS_RGS16, Regulator of G protein signaling (RGS) domain
found in the RGS16 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS16 protein. RGS16 is a member of the RGS protein
family, a diverse group of multifunctional proteins that
regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G-alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS16 is a member
of the R4/RGS subfamily and interacts with neuronal
G-alpha0. RGS16 expression is upregulated by IL-17 of
the NF-kappaB signaling pathway in autoimmune B cells.
Length = 114
Score = 80.1 bits (197), Expect = 2e-20
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 10 FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLA-DVPAKAEEIWSEFLAVD 68
F LL G F FL EFS ENL+FW A +E K + A + ++A I+ EF+ +
Sbjct: 1 FDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFEEFIRSE 60
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
A +N+D + ELTR N++ T FD A LM+ DSY R+L+S YRD
Sbjct: 61 APKEVNIDHETRELTRTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRD 114
>gnl|CDD|188672 cd08717, RGS_RGS5, Regulator of G protein signaling (RGS) domain
found in the RGS5 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS5 protein. RGS5 is member of the R4/RGS subfamily of
the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. Two splice isoforms of RGS5 has been
found: RGS5L (long) which is expressed in smooth muscle
cells (pericytes) and heart and RGS5S (short) which is
highly expressed in the ciliary body of the eye, kidney,
brain, spleen, skeletal muscle, and small intestine.
Outside of the GPCR pathway, RGS5 interacts with the
14-3-3 protein.
Length = 114
Score = 77.0 bits (189), Expect = 2e-19
Identities = 40/112 (35%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 12 ELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIWSEFLAVDAS 70
+LL++ G F FL EFS EN++FWEA ++ K + KA++I+ EF+ +A
Sbjct: 3 KLLQNSYGLASFKSFLKSEFSEENIEFWEACEDYKKTKSPLKMATKAKKIYEEFIQTEAP 62
Query: 71 CPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+N+D + ++T KN+ P+ SFD A ++ LM+ DS R++RS+ Y++
Sbjct: 63 KEVNIDHFTKDVTMKNLVEPSSSSFDLAQKRIFALMEKDSLPRFVRSEFYQE 114
>gnl|CDD|188695 cd08741, RGS_RGS10, Regulator of G protein signaling (RGS) domain
found in the RGS10 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS10
protein. RGS10 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS10 belong to the R12 RGS subfamily,
which includes RGS12 and RGS14, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS10 exists in
2 splice isoforms. RGS10A is specifically expressed in
osteoclasts and is a key component in the RANKL
signaling mechanism for osteoclast differentiation,
whereas RGS10B expressed in brain and in immune tissues
and has been implicated in diverse processes including:
promoting of dopaminergic neuron survival via
regulation of the microglial inflammatory response,
modulation of presynaptic and postsynaptic G-protein
signalling, as well as a possible role in regulation of
gene expression.
Length = 113
Score = 75.8 bits (186), Expect = 7e-19
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 13 LLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFLAVDASC 71
LL+DP G F +FL KEFS EN+ FW A ++ K + KA+EI+ FL+ AS
Sbjct: 4 LLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASS 63
Query: 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY 120
+NV+ +S L K +E P F +++LMK DSYSR+L+SD++
Sbjct: 64 QVNVEGQS-RLNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLF 111
>gnl|CDD|188664 cd08709, RGS_RGS2, Regulator of G protein signaling (RGS) domain
found in the RGS2 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS2 protein. RGS2 is a member of R4/RGS subfamily of
RGS family, a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha-subunits.
The RGS domain controls G-protein signaling by
accelerating the GTPase activity of the G- alpha subunit
which leads to G protein deactivation and promotes
desensitization. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS2 plays
important roles in the regulation of blood pressure and
the pathogenesis of human hypertension, as well as in
bone formation in osteoblasts. Outside of the GPCR
pathway RGS2 interacts with calmodulin, beta- COP,
tubulin, PKG1-alpha, and TRPV6.
Length = 114
Score = 74.7 bits (183), Expect = 2e-18
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 10 FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELK-CLPLADVPAKAEEIWSEFLAVD 68
F ELL G F FL EFS EN++FW A ++ K + +KA++I+++F+ +
Sbjct: 1 FDELLASKYGVAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLTSKAKKIYTDFIEKE 60
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
A IN+D ++ L +NI+ T F A VY LM+++SY R+L S+ Y++
Sbjct: 61 APKEINIDFQTKTLIAQNIQEATSGCFTAAQKRVYSLMENNSYPRFLESEFYQE 114
>gnl|CDD|188698 cd08744, RGS_RGS17, Regulator of G protein signaling (RGS) domain
found in the RGS17 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS17 protein, a member of the RZ subfamily of the RGS
protein family. They are a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, the
RGS domain containing proteins are involved in many
crucial cellular processes such as regulation of
intracellular trafficking, glial differentiation,
embryonic axis formation, skeletal and muscle
development, and cell migration during early
embryogenesis. RGS proteins play critical regulatory
roles as GTPase activating proteins (GAPs) of the
heterotrimeric G-protein G-alpha-subunits. Deactivation
of the G-protein signaling controlled by the RGS domain,
which accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP, results in reassociation of
the alpha-subunit with the beta-gamma-dimer and
inhibition of downstream activity. The RZ subfamily of
RGS proteins includes RGS19 (former GAIP), RGS20, and
its splice variant Ret-RGS. RGS17 is a relatively
non-selective GAP for G-alpha-z and other G-alpha-i/o
proteins. RGS17 blocks dopamine receptor-mediated
inhibition of cAMP accumulation; it also blocks
thyrotropin releasing hormone-stimulated Ca++
mobilization. RGS17, like other members of RZ subfamily,
can act either as a GAP or as G-protein effector
antogonist.
Length = 118
Score = 70.9 bits (173), Expect = 8e-17
Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADV-PAKAEEIWSEFL 65
+ +F +++K P GR+ F +FL E+S ENL FW A ++LK V KA I+ +++
Sbjct: 2 SQNFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARLIYEDYI 61
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYR 121
++ + +++DSR E+ +N+ +P ++ A +Y LM DS+ R+L S IY+
Sbjct: 62 SILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYK 117
>gnl|CDD|188671 cd08716, RGS_RGS13, Regulator of G protein signaling (RGS) domain
found in the RGS13 protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS13 protein. RGS13 is member of the R4/RGS subfamily
of the RGS family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory roles as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha subunits. The RGS domain controls
G-protein signaling by accelerating the GTPase activity
of the G-alpha subunit which leads to G protein
deactivation and promotes desensitization. As a major
G-protein regulator, RGS domain containing proteins are
involved in many crucial cellular processes such as
regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS13 is predominantly expressed in T
and B lymphocytes and in mast cells, and plays a role in
adaptive immune responses. RGS13 also found in Rgs13,
which is also expressed in dendritic cells and in
neuroendocrine cells of the thymus, gastrointestinal,
and respiratory tracts. Outside of the GPCR pathway,
RGS5 interacts with the PIP3 protein.
Length = 114
Score = 62.3 bits (151), Expect = 2e-13
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 10 FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPA-KAEEIWSEFLAVD 68
F L+ G + +L E S EN++FW A + K + A ++++ ++
Sbjct: 1 FENLMATKYGPIIYATYLKTEHSDENIEFWLACETYKKIASQRKRISMARKLFASYIQPQ 60
Query: 69 ASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYR 121
A IN+DS + + +NI+ PT+ FD A VY M+ DSY R+L S Y+
Sbjct: 61 APREINIDSPTRKAIIRNIQEPTQSCFDEAQRIVYMHMERDSYPRFLESKFYQ 113
>gnl|CDD|188675 cd08720, RGS_SNX25, Regulator of G protein signaling (RGS) domain
found in the Sorting Nexin 25 (SNX25) protein. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the SNX25 (Sorting Nexin 25) protein,
a member of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
as well as apoptosis, cell proliferation, and modulation
of cardiac development. SNX25 is a member of the
Dopamine receptors (DAR) signalplex and regulates the
trafficking of D1 and D2 DARs.
Length = 110
Score = 45.5 bits (108), Expect = 4e-07
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 13 LLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDASCP 72
+L + GR + ++FL++ S + FWEAV+EL+ ++ EI+ F+ V+ +
Sbjct: 1 ILANVFGRKYLSQFLERMDSQALIGFWEAVEELRSANKSEWHQLGAEIFYTFI-VEPTAE 59
Query: 73 INVDSRSHELTRKNIE-----NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYR 121
I VD RK IE + F +V ++ Y ++ SD Y+
Sbjct: 60 IKVDKS----LRKRIEQFLLGDKGPEVFYEVQENVVETLEEKYYPSFVVSDQYK 109
>gnl|CDD|188663 cd08708, RGS_FLBA, Regulator of G protein signaling (RGS) domain
found in the FLBA (Fluffy Low BrlA) protein. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the FLBA (Fluffy Low BrlA) protein.
FLBA is a member of the RGS protein family, a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins play
a critical regulatory role as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein G-alpha-subunits.
Deactivation of the G-protein signaling controlled by
the RGS domain accelerates the GTPase activity of the
alpha subunit by hydrolysis of GTP to GDP which results
in reassociation of the alpha-subunit with the
beta-gamma-dimer and thereby inhibition of downstream
activity. As a major G-protein regulator, RGS domain
containing proteins are involved in many crucial
cellular processes. The RGS domain of the FLBA protein
antagonizes G protein signaling to block proliferation
and allow development. It is required for control of
mycelial proliferation and activation of asexual
sporulation in yeast.
Length = 148
Score = 43.9 bits (104), Expect = 2e-06
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 40/143 (27%)
Query: 11 RELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQE-------LKCLPLADVPAKAEE---- 59
++LKDP R F + L+KEF ENL F+ V+E L L A+E
Sbjct: 3 DKILKDPGLRYLFREHLEKEFCEENLSFYLEVKEFLKKMTILSKLLDFKSSQAADEDLDR 62
Query: 60 --------IWSEFLAVDASCPINVDSRSHELTRK-------NIENPTRWSFDTAAAHVY- 103
I++ +LA + C +N+D H L + I ++
Sbjct: 63 ESLAQAYHIYNTYLAPGSPCELNID---HNLRNRITTIMTEKIVGEDDSMAESLQGVEAL 119
Query: 104 ----------HLMKSDSYSRYLR 116
LM DS ++L+
Sbjct: 120 FEEAQNAVFKPLMAGDSVPKFLK 142
>gnl|CDD|188688 cd08734, RGS-like_1, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 1. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. As a major G-protein
regulator, the RGS domain containing proteins that are
involved in many crucial cellular processes. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell
proliferation, and modulation of cardiac development.
Several RGS proteins can fine-tune immune responses,
while others play an important role in neuronal signal
modulation. Some RGS proteins are the principal
elements needed for proper vision.
Length = 109
Score = 39.8 bits (93), Expect = 4e-05
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 23 FTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWSEFLAVDASCPINVDS 77
F + +FSGENL F V+E K L A+ A +I+ EF++ ++ IN+ S
Sbjct: 8 FGFSAESDFSGENLSFLTLVKEYKRLSNPAEKFTLASKIYKEFISSESPFQINISS 63
>gnl|CDD|188662 cd08707, RGS_Axin, Regulator of G protein signaling (RGS) domain
found in the Axin protein. The RGS (Regulator of
G-protein Signaling) domain is an essential part of the
Axin protein. Axin is a member of the RA/RGS subfamily
of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins
regulate many aspects of embryonic development such as
glial differentiation, embryonic axis formation, and
skeletal and muscle development. The RGS domain of Axin
is specifically interacts with the heterotrimeric
G-alpha12 protein, but not with closely related
G-alpha13, and provides a unique tool to regulate
G-alpha12-mediated signaling processes. The RGS domain
of Axin also interacts with the tumor suppressor protein
APC (Adenomatous Polyposis Coli) in order to control the
cytoplasmic level of the proto-oncogene, beta-catenin.
Length = 117
Score = 40.1 bits (94), Expect = 4e-05
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 13 LLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAK--AEEIWSEFLAVDAS 70
LL D G + F +L++E + L FW A + + ++ A+ I+ ++ +
Sbjct: 4 LLDDQDGIELFRTYLEQEGCADLLDFWFACNGFRKMSDSEEKRSKLAKAIYRRYIKDNGI 63
Query: 71 CPINVDSRSHELTRKNIENPTRWS------FDTAAAHVYHLMKSDSYSRYLRSDIY 120
V + T+ I+ + FD A + M+ ++Y +L+SDIY
Sbjct: 64 ----VSRQLKPATKSFIKECIKKQQLDPAMFDQAQTEIQTTMEENTYPSFLKSDIY 115
>gnl|CDD|188676 cd08721, RGS_AKAP2_2, Regulator of G protein signaling (RGS) domain
2 found in the A-kinase anchoring protein, D-AKAP2. The
RGS (Regulator of G-protein Signaling) domain is an
essential part of the D-AKAP2 (A-kinase anchoring
protein), a member of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. D-AKAP2 contains
two RGS domains which play an important role in
spatiotemporal localization of cAMP-dependent PKA
(cyclic AMP-dependent protein kinase) that regulates
many different signaling pathways by phosphorylation of
target proteins. This cd contains the second RGS domain.
Length = 121
Score = 39.3 bits (92), Expect = 9e-05
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 19/113 (16%)
Query: 23 FTKFLDKEFSGENLKFWEAV----QELKCLPLADVPAKAEE----IWSEFLAVDASCPIN 74
F +++++E + L+FW A +L +A+ I+ ++ ++ A+ P+
Sbjct: 11 FMEYMEQEGARNLLQFWLAADNFQSQLAAKEGQYDGQQAQNDAMIIYDKYFSLQATEPLG 70
Query: 75 VDSRSHELTRKNIEN-------PTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY 120
D + TR +E+ P F+ ++ +L S +Y
Sbjct: 71 FDDK----TRLEVESNICREGGPLPSCFEAPLLQALTTLEQHYLPGFLSSQLY 119
>gnl|CDD|188681 cd08726, RGS_RGS22_3, Regulator of G protein signaling domain
RGS_RGS22_3. The RGS (Regulator of G-protein
Signaling) domain found in the RGS22 protein, a member
of the RA/RGS subfamily of the RGS protein family. They
are a diverse group of multifunctional proteins that
regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins
regulate many aspects of embryonic development such as
glial differentiation, embryonic axis formation,
skeletal and muscle development, cell migration during
early embryogenesis, as well as apoptosis, cell
proliferation, and modulation of cardiac development.
RGS22 contains at least 3 copies of the RGS domain in
vertebrata and exists in multiple splicing variants.
RGS22 is predominantly expressed in testis and believed
to play an important role in spermatogenesis.
Length = 130
Score = 29.4 bits (66), Expect = 0.30
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 10 FRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVP---AKAEEIWSEFL 65
F++LL + L + F KFL++ + +L W +++ + +P D KA+EI +++L
Sbjct: 1 FQDLLHNRLELEFFRKFLEENSASMDLLCWLDIEQFRRIPHTDNAKRDEKAKEIKNKYL 59
>gnl|CDD|188674 cd08719, RGS_SNX13, Regulator of G protein signaling (RGS) domain
found in the Sorting Nexin 13 (SNX13) protein. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the SNX13 (Sorting Nexin 13) protein,
a member of the RGS protein family. They are a diverse
group of multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
as well as apoptosis, cell proliferation, and modulation
of cardiac development. The RGS-domain of SNX13 plays a
major role through attenuation of Galphas-mediated
signaling and regulates endocytic trafficking and
degradation of the epidermal growth factor receptor.
Snx13-null mice were embryonic lethal around
midgestation which supports an essential role for SNX13
in mouse development and regulation of endocytosis
dynamics.
Length = 135
Score = 28.1 bits (63), Expect = 0.82
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 55 AKAEEIWSEFLAVDASCPINVDSRSHELTRKNIEN--PTRWSFDTAAAHVYHLMKSDS-- 110
A A I+ ++L+ AS + +D + + N P+ FD V+ +M+ D
Sbjct: 64 AAALNIYDQYLSEKASPRVPLDDSLVKKLLNRLRNDTPSDLWFDDIQQKVFDIMQEDERF 123
Query: 111 YSRYLRSDIY 120
Y + +S Y
Sbjct: 124 YPAFKKSPAY 133
>gnl|CDD|188679 cd08724, RGS_GRK-like, Regulator of G protein signaling domain
(RGS) found in G protein-coupled receptor kinase (GRK).
The RGS domain is found in G protein-coupled receptor
kinases (GRKs). These proteins play a key role in
phosphorylation-dependent
desensitization/resensitization of GPCRs (G
protein-coupled receptors), intracellular trafficking,
endocytosis, as well as in the modulation of important
intracellular signaling cascades by GPCR. GRKs also
modulate cellular response in
phosphorylation-independent manner using their ability
to interact with multiple signaling proteins involved
in many essential cellular pathways. The RGS domain of
the GRKs has very little sequence similarity with the
canonical RGS domain of the RGS proteins and therefore
is often refered to as the RH (RGS Homology) domain.
Based on sequence homology the GRK family consists of
three major subfamilies: the GRK4 subfamily (GRK4, GRK5
and GRK6), the rhodopsin kinase or visual GRK subfamily
(GRK1 and GRK7), and the beta-adrenergic receptor
kinases subfamily (GRK2/GRK3). RGS proteins regulate
many aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell
proliferation, and modulation of cardiac development.
Length = 114
Score = 27.2 bits (61), Expect = 1.9
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 15 KDPLGRDHFTKFLD-KEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFL 65
+ P+GR F +F + + ++F + ++E + + KA EI+ +++
Sbjct: 4 QQPIGRLLFRQFCETRPELVPQIEFLDEIKEYEVAEDEERAKKAREIYDKYI 55
>gnl|CDD|188702 cd08748, RGS_GRK1, Regulator of G protein signaling domain (RGS)
found in G protein-coupled receptor kinase 1 (GRK1).
The RGS domain is found in G protein-coupled receptor
kinases 1 (GRK1, also refered to as Rhodopsin kinase)
which play a key role in phosphorylation of rhodopsin
(Rho), a G protein-coupled receptor responsible for
visual signal transduction in rod cell. GRK1 is a
member of the GRK kinase family which includes three
major subfamilies: the GRK4 subfamily (GRK4, GRK5 and
GRK6), the rhodopsin kinase or visual GRK subfamily
(GRK1 and GRK7), and the beta-adrenergic receptor
kinases subfamily (GRK2/GRK3). The RGS domain of the
GRKs has very little sequence similarity with the
canonical RGS domain of the RGS proteins and therefore
is often refered to as the RH (RGS Homology) domain. A
few inactivation mutations in GRK1 have been found in
patients with Oguchi disease, a stationary form of
night blindness. RGS proteins regulate many aspects of
embryonic development such as glial differentiation,
embryonic axis formation, skeletal and muscle
development, cell migration during early embryogenesis,
as well as apoptosis, cell proliferation, and
modulation of cardiac development.
Length = 138
Score = 26.3 bits (58), Expect = 4.8
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 9 SFREL-LKDPLGRDHFTKFLD-KEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
SF + ++ P+G+ F +FL+ E + W+ +++ + KA+ I + +L
Sbjct: 16 SFESMCVEQPIGKRLFQQFLEATEGYAAAVALWKDIEDYDVAEDGERAKKAQAIRNRYLE 75
Query: 67 VDA 69
+
Sbjct: 76 SSS 78
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 25.9 bits (58), Expect = 6.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 97 TAAAHVYHLMKSDSYSRYL 115
TAAA Y L D +++L
Sbjct: 145 TAAALAYGLHDKDEETKFL 163
>gnl|CDD|191353 pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is
found in insertion sequences related to IS66. The
function of these proteins is uncertain, but they are
probably essential for transposition.
Length = 108
Score = 25.2 bits (56), Expect = 8.9
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 92 RWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKKSSMKVL 136
R D AA V ++ D +S L F+ ++++ +K+L
Sbjct: 15 RKGIDGLAALVQEVLGLDPFSGAL-------FVFRNRRRDRLKIL 52
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 764
Score = 25.9 bits (57), Expect = 9.1
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 91 TRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKKSSMK 134
W + A +V+ L K +R+ S Y D+ KK K
Sbjct: 85 PNWQYVAARLYVFDLYKEARINRHYNSFGYGDYYELVKKLVEEK 128
>gnl|CDD|236460 PRK09300, PRK09300, tRNA splicing endonuclease; Reviewed.
Length = 330
Score = 25.7 bits (57), Expect = 9.4
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 11 RELLKDPLGRDHFTKFLDKEFSGENLKF--WEA-------VQELKCLPLADVPAKAEEIW 61
R ++ DP G + F K G L+ EA V ++ L + +A E+
Sbjct: 174 RVVVWDPPGELYERGFYGKPLDGRRLQLSLVEAAYLLERGVLSVEILDADEFVERAREVE 233
Query: 62 SEFLAVDA 69
EF A
Sbjct: 234 GEFDRKLA 241
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.398
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,932,402
Number of extensions: 594249
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 42
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)