RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10901
(137 letters)
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 138 bits (349), Expect = 3e-43
Identities = 53/122 (43%), Positives = 75/122 (61%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSE 63
+Q + S +LL + G++ F FL EFS EN++FW A ++ K +P KAEEI+
Sbjct: 20 MQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKKTESDLLPCKAEEIYKA 79
Query: 64 FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
F+ DA+ IN+D R+ E T K I+ PT FD A +Y LM+ DSY R+L+SDIY +
Sbjct: 80 FVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNL 139
Query: 124 LN 125
LN
Sbjct: 140 LN 141
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 137 bits (347), Expect = 5e-43
Identities = 61/129 (47%), Positives = 88/129 (68%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSE 63
+ E LKDP+GR+ F KFL+ EFS ENL+FW AV++LK P+ +VP++ +EIW E
Sbjct: 11 KRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPIKEVPSRVQEIWQE 70
Query: 64 FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
FLA A IN+DS+S++ T N++ P R++F+ A H+Y LMKSDSY R++RS Y++
Sbjct: 71 FLAPGAPSAINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQEL 130
Query: 124 LNGSKKKSS 132
L KK +
Sbjct: 131 LQAKKKSGN 139
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium, SGC,
signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B*
2bt2_A
Length = 155
Score = 133 bits (335), Expect = 4e-41
Identities = 52/123 (42%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
+ A SF LL G F FL EFS ENL+FW A +E K A + +KA I+
Sbjct: 33 TRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFE 92
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
EF+ V A +N+D ++ E TRKN++ P+ FD A V+ LM+ DSY R+LRS +Y D
Sbjct: 93 EFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLD 152
Query: 123 FLN 125
L+
Sbjct: 153 LLS 155
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 132 bits (333), Expect = 7e-41
Identities = 45/127 (35%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
LQ S +LL++ G F FL EFS ENL+FW A ++ K + A + KA++I+
Sbjct: 23 LQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIYE 82
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
EF+ +A +N+D + ++T KN+ P+ SFD A ++ LM+ DS R++RS+ Y++
Sbjct: 83 EFIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQE 142
Query: 123 FLNGSKK 129
++G
Sbjct: 143 LISGPSS 149
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 132 bits (332), Expect = 9e-41
Identities = 59/125 (47%), Positives = 82/125 (65%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
A +F EL++DP GR F FL KEFSGENL FWEA ++LK + V KAEEI+ FLA
Sbjct: 22 AFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLA 81
Query: 67 VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNG 126
A IN+D ++ ++T K +++P R+ D A H+Y LMK DSY+RYL+S IY++ L
Sbjct: 82 PGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAK 141
Query: 127 SKKKS 131
+ +
Sbjct: 142 AIEPQ 146
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 140
Score = 131 bits (331), Expect = 1e-40
Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
++ SF +LL G + FT+FL EFS EN++FW A ++ K + KA+ I+
Sbjct: 13 VKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYE 72
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+F+ DA +N+D + E+ +I PT SFD A + VY LM+ DSY+R+L+SDIY D
Sbjct: 73 KFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLD 132
Query: 123 FLNGSKK 129
++G
Sbjct: 133 LMSGPSS 139
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 130 bits (329), Expect = 2e-40
Identities = 48/123 (39%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
L+ S +LL G F FL EFS ENL+FW A ++ K + + + +KA++I++
Sbjct: 5 LKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFA 64
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
E++A+ A +N+DS + E T+ N+++ TR FD A ++ LM+ DSY R+LRSD+Y D
Sbjct: 65 EYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 124
Query: 123 FLN 125
+N
Sbjct: 125 LIN 127
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 131 bits (330), Expect = 2e-40
Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
++ SF +LL G + FT+FL EFS EN++FW A ++ K + KA+ I+
Sbjct: 9 VKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYE 68
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+F+ DA +N+D + E+ +I PT SFD A + VY LM+ DSY+R+L+SDIY D
Sbjct: 69 KFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLD 128
Query: 123 FLNGSKKKSS 132
+ G ++ +
Sbjct: 129 LMEGRPQRPT 138
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 138 bits (348), Expect = 3e-40
Identities = 59/126 (46%), Positives = 82/126 (65%)
Query: 5 QPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEF 64
+ A +F EL++DP GR F FL KEFSGENL FWEA ++LK + V KAEEI+ F
Sbjct: 297 RWAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLF 356
Query: 65 LAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFL 124
LA A IN+D ++ ++T K + +P R+ D A H+Y LMK DSY+RYL+S IY++ L
Sbjct: 357 LAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEML 416
Query: 125 NGSKKK 130
+ +
Sbjct: 417 AKAIEP 422
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 149
Score = 130 bits (329), Expect = 3e-40
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIWS 62
+ A+S LL+DP G F +FL KEFS EN+ FW A ++ K + + KA+EI+
Sbjct: 13 AKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYM 72
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
FL+ AS +NV+ +S L K +E P F +++LMK DSYSR+L+SD++
Sbjct: 73 TFLSSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLK 131
Query: 123 FLNGSKKKSSM 133
+++ +
Sbjct: 132 HKRTEEEEEDL 142
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 130 bits (327), Expect = 8e-40
Identities = 40/126 (31%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
L + +F +++K P GR+ F +FL E+S ENL FW A ++LK + KA I+
Sbjct: 31 LSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYE 90
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+++++ + +++DSR E+ +N+ +P ++ A +Y LM DS+ R+L S IY+
Sbjct: 91 DYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKS 150
Query: 123 FLNGSK 128
F+ +
Sbjct: 151 FVESTA 156
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 129 bits (325), Expect = 1e-39
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
+ +F ELL G F FL EF EN++FW A ++ K + +KA +I++
Sbjct: 21 QLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYT 80
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+F+ +A IN+D ++ L +NI+ T F TA VY LM+++SY R+L S+ Y+D
Sbjct: 81 DFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQD 140
Query: 123 FLNGSK 128
+
Sbjct: 141 LCKKPQ 146
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 129 bits (325), Expect = 1e-39
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
A SF +L+ P GR F FL E+S EN+ FW A +ELK V KA I+
Sbjct: 18 QSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYE 77
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+++++ + +++DSR E K ++ P+ +FD A +Y LM DSY R+L S YR
Sbjct: 78 DYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRA 137
Query: 123 FLNGSKKKSSM 133
L SS+
Sbjct: 138 LLPWVDSSSSL 148
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein
signalling domain, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 128 bits (323), Expect = 3e-39
Identities = 47/131 (35%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD---VPAKAEEIWSE 63
A SF LL+DPLG +FT+FL KEFS EN+ FW+A + + +P +D + +A I+ E
Sbjct: 12 ALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQE 71
Query: 64 FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
FL+ A P+N+D ++ L + + P F +++LMK DSY+R+++S +YR+
Sbjct: 72 FLSSQALSPVNIDRQA-WLGEEVLAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYREC 130
Query: 124 LNGSKKKSSMK 134
L + ++
Sbjct: 131 LLAEAEGRPLR 141
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 155
Score = 127 bits (321), Expect = 6e-39
Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD---VPAKAEEI 60
A SF LL+DP+G +F+ FL KEFS EN+ FW+A + +P D + +A EI
Sbjct: 13 ASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREI 72
Query: 61 WSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIY 120
+S+FL A+ P+N+DS++ +L + P F +++LMK DSY+R+L+S +Y
Sbjct: 73 FSKFLCSKATTPVNIDSQA-QLADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLY 131
Query: 121 RDFLNGSKKKSSM 133
++ + + ++
Sbjct: 132 QECILAEVEGRAL 144
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 126 bits (317), Expect = 2e-38
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPL-ADVPAKAEEIWS 62
+ A+S LL+DP G F +FL KEFS EN+ FW A ++ K + + KA+EI+
Sbjct: 29 AKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYM 88
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
FL+ AS +NV+ +S K +E P F +++LMK DSYSR+L+SD++
Sbjct: 89 TFLSSKASSQVNVEGQSRL-NEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLK 147
Query: 123 FLNGSK 128
+
Sbjct: 148 HKRTEE 153
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 124 bits (313), Expect = 6e-38
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
L SF LL G F FL EFS ENL+FW A +E K + + ++A I+
Sbjct: 16 LGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFD 75
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
E++ +A +N+D + ELT+ N++ T FD A LM+ DSY R+L+S YRD
Sbjct: 76 EYIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRD 135
Query: 123 F 123
Sbjct: 136 L 136
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 124 bits (313), Expect = 3e-37
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
+ A S L+ G F FL E+S EN+ FW + +E K + + + KA++I++
Sbjct: 57 KKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYN 116
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
EF++V A+ +N+DS + E T +N+ PT FD A +++LM+ DSY R+L+S Y D
Sbjct: 117 EFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLD 176
Query: 123 FLNGSKKKSSMK 134
N S + +
Sbjct: 177 LTNPSSCGAEKQ 188
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 117 bits (293), Expect = 7e-35
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 8/138 (5%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD-----VPAKAE 58
L+ A S LL D G F FL +E + L FW A + L D A
Sbjct: 10 LKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLAR 69
Query: 59 EIWSEFLAVDASCP---INVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYL 115
I+ +++ + ++S + FD A + M+ ++Y +L
Sbjct: 70 AIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQATMEENTYPSFL 129
Query: 116 RSDIYRDFLNGSKKKSSM 133
+SDIY ++ + +
Sbjct: 130 KSDIYLEYTRTGSESPKV 147
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 37.8 bits (88), Expect = 5e-04
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 3/114 (2%)
Query: 15 KDPLGRDHFTKFLDKEFSGEN-LKFWEAVQELKCLPLADVPAKAEEIWSEFLAVDAS--C 71
++P+GR F +F + F + V E + P A + FL+
Sbjct: 59 RNPIGRLLFREFCATRPELSRCVAFLDGVAEYEVTPDDKRKACGRNLTQNFLSHTGPDLI 118
Query: 72 PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
P T++ + P + F + + ++ YL S + FL
Sbjct: 119 PEVPRQLVTNCTQRLEQGPCKDLFQELTRLTHEYLSVAPFADYLDSIYFNRFLQ 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.031
Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 60/173 (34%)
Query: 8 SSFRELLKDPLGR-DHFTK-FLDK-----EFSGENLKFWEAVQELKCLPL----ADVPAK 56
S E ++D L D++ DK E S L+ E + L + A +P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 57 AEEI-WSEF-------------------------------LAVDASCPINVDSRSHELTR 84
+ W + + ++ + + H R
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---R 447
Query: 85 KNIEN---PTRWSFDTAAA---------HV-YHLMKSDSYSRY-LRSDIYRDF 123
+++ P + D H+ +HL + R L ++ DF
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Score = 27.5 bits (60), Expect = 1.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 46 KCL-PLADVPAKAEEIWSEFLAVDASCPINVDSRSHELT 83
CL L +V + + W+ F + SC I + +R ++T
Sbjct: 245 NCLLVLLNV--QNAKAWNAF---NLSCKILLTTRFKQVT 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.72
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 45/119 (37%)
Query: 6 PASSF---RELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWS 62
P +SF +L ++ F K L E + D P E+
Sbjct: 23 PTASFFIASQL------QEQFNKILP-----------EPTEGF---AADDEPTTPAELVG 62
Query: 63 EFLA-VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLR-SDI 119
+FL V + + + ++ + F+ + YL +DI
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCL-----TEFE---------------NCYLEGNDI 101
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction,
protein complex, GTP-binding, lipoprotein, membrane,
nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus}
PDB: 3cx6_B* 3cx7_B* 1htj_F
Length = 203
Score = 25.5 bits (55), Expect = 5.4
Identities = 11/71 (15%), Positives = 26/71 (36%)
Query: 6 PASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFL 65
+L P F +++ + L F+ + + D + ++IW+ FL
Sbjct: 22 IFQDLEKLKSHPAYLVVFLRYILSQADPGPLLFYLCSEVYQQTNPKDSRSLGKDIWNIFL 81
Query: 66 AVDASCPINVD 76
+A + +
Sbjct: 82 EKNAPLRVKIP 92
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 25.6 bits (57), Expect = 6.1
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 89 NPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFL 124
+ R AA + + +Y + D+L
Sbjct: 151 SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.398
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,072,322
Number of extensions: 109505
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 29
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)