RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10901
(137 letters)
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 123 bits (309), Expect = 8e-38
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCL-PLADVPAKAEEIWSEFL 65
SF +LL G + FT+FL EFS EN++FW A ++ K + KA+ I+ +F+
Sbjct: 10 GESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFI 69
Query: 66 AVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
DA +N+D + E+ +I PT SFD A + VY LM+ DSY+R+L+SDIY D +
Sbjct: 70 QTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLME 129
Query: 126 G 126
G
Sbjct: 130 G 130
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 138
Score = 122 bits (307), Expect = 2e-37
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 7 ASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEFLA 66
A +F EL++DP GR F FL KEFSGENL FWEA ++LK + V KAEEI+ FLA
Sbjct: 15 AFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLA 74
Query: 67 VDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLN 125
A IN+D ++ ++T K +++P R+ D A H+Y LMK DSY+RYL+S IY++ L
Sbjct: 75 PGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLA 133
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 128
Score = 118 bits (298), Expect = 3e-36
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 5 QPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWSE 63
+ A S L+ G F FL E+S EN+ FW + +E K + + + KA++I++E
Sbjct: 8 KWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNE 67
Query: 64 FLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDF 123
F++V A+ +N+DS + E T +N+ PT FD A +++LM+ DSY R+L+S Y D
Sbjct: 68 FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 127
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 128
Score = 118 bits (296), Expect = 5e-36
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLP-LADVPAKAEEIWS 62
A SF +L+ P GR F FL E+S EN+ FW A +ELK V KA I+
Sbjct: 7 QSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYE 66
Query: 63 EFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+++++ + +++DSR E K ++ P+ +FD A +Y LM DSY R+L S YR
Sbjct: 67 DYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRA 126
Query: 123 FL 124
L
Sbjct: 127 LL 128
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 117 bits (295), Expect = 6e-36
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCL-PLADVPAKAEEIWSEFLAV 67
SF LL G F FL EFS ENL+FW A +E K + + ++A +I+ EF+
Sbjct: 1 SFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICS 60
Query: 68 DASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+A +N+D + ELTR N++ T FD A LM+ DSY R+L+S YRD
Sbjct: 61 EAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRD 115
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 110 bits (277), Expect = 8e-33
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 8/138 (5%)
Query: 4 LQPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLAD-----VPAKAE 58
L+ A S LL D G F FL +E + L FW A + L D A
Sbjct: 10 LKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLAR 69
Query: 59 EIWSEFLAVDASC---PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYL 115
I+ +++ + ++S + FD A + M+ ++Y +L
Sbjct: 70 AIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQATMEENTYPSFL 129
Query: 116 RSDIYRDFLNGSKKKSSM 133
+SDIY ++ + +
Sbjct: 130 KSDIYLEYTRTGSESPKV 147
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 157
Score = 102 bits (255), Expect = 2e-29
Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 9 SFRELLKDPLGRDHFTKFLDKEFS--GENLKFWEAVQELKCLP-LADVPAKAEEIWSEFL 65
+F ++ LG F F K ++F+E +++ + L + + EI+ ++
Sbjct: 26 TFEKIFSQKLGYLLFRDFCLKHLEEAKPLVEFYEEIKKYEKLETEEERLVCSREIFDTYI 85
Query: 66 AVDASC---PINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRD 122
+ P + + H + F + ++ D + +++ SD +
Sbjct: 86 MKELLACSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTR 145
Query: 123 FL 124
F
Sbjct: 146 FC 147
>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 87.2 bits (216), Expect = 3e-23
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 2/105 (1%)
Query: 5 QPASSFRELLKDPLGRDHFTKFLDKEFSGENLKFWEAVQELKCLPLADVPAKAEEIWSEF 64
+L P F +++ + L F+ + + D + ++IW+ F
Sbjct: 4 IIFQDLEKLKSRPAHLGVFLRYIFSQADPSPLLFYLCAEVYQQASPKDSRSLGKDIWNIF 63
Query: 65 LAVDASCPINVDS--RSHELTRKNIENPTRWSFDTAAAHVYHLMK 107
L +A + + ++ +R R A ++
Sbjct: 64 LEKNAPLRVKIPEMLQAEIDSRLRNSEDARGVLCEAQEAAMPEIQ 108
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 26.0 bits (56), Expect = 1.8
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 73 INVDSRSHELTRKNIENPTRWSFDTAAAHVYHLMKSDSYSRYLRSDIYRDFLNGSKKKSS 132
+ +D + N+ N + A+ +Y +S + I L+ + SS
Sbjct: 15 MTLDRSEYTSLIPNLRNVVALDTEVASNRIY-------WSDLSQRMICSTQLDRAHGVSS 67
Query: 133 MKVLL 137
++
Sbjct: 68 YDTVI 72
>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus
[TaxId: 274]}
Length = 406
Score = 24.2 bits (52), Expect = 7.4
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 51 ADVPAK--AEEIWSEFLAVDASCPINVDSRSHELTRKNIENPTRWSFDTAAAHVYHLM 106
A + A + + AS V EL RK + D A A +Y M
Sbjct: 30 APIEAVDFVRLLAEKAYREGAS-LFTVIYGDQELARKRLALAPEEGLDKAPAWLYEGM 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.398
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 512,826
Number of extensions: 21912
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 17
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)