BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10905
         (219 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9TZM3|LRK1_CAEEL Leucine-rich repeat serine/threonine-protein kinase 1
            OS=Caenorhabditis elegans GN=lrk-1 PE=1 SV=6
          Length = 2393

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 16/154 (10%)

Query: 26   ELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVD---VSFLVSSPSTSAWVWSYVY 82
            ++W G S+G ISI     H + S+D+ +    +    D   V  LV S      VW  + 
Sbjct: 2155 QIWAGHSEGRISI-----HHIASNDSFSFSSSLYLPDDKCIVRQLVGSKDAQK-VWIALE 2208

Query: 83   PGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTC---- 138
                V   + + R +   LD  K++P SE++ +I +E      Q +VT + +L+      
Sbjct: 2209 KSSKVQMVEVEKRQVTGSLDIRKVMPGSETIHTIDME---MASQNYVTCIGLLERNDGDQ 2265

Query: 139  LYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAI 172
            LYIGT+ G +V+A   +L+P++  RP+E  +T+I
Sbjct: 2266 LYIGTSKGLLVIAHATTLQPLSACRPFEGDITSI 2299


>sp|O08601|MTP_MOUSE Microsomal triglyceride transfer protein large subunit OS=Mus
           musculus GN=Mttp PE=2 SV=2
          Length = 894

 Score = 32.7 bits (73), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 156 LRPITVFRPYEELVTAILPLGGDIVTIGRGYRSLVSRYTNSTASSQCKEN 205
           LRP+T F  Y +L++ +L   GD V++ +G   L+    +    S  K N
Sbjct: 700 LRPVTFFNGYSDLMSKMLSASGDPVSVVKGLILLIDHSQDIQLQSGLKAN 749


>sp|P55158|MTP_MESAU Microsomal triglyceride transfer protein large subunit
           OS=Mesocricetus auratus GN=MTTP PE=2 SV=1
          Length = 895

 Score = 32.7 bits (73), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 156 LRPITVFRPYEELVTAILPLGGDIVTIGRGYRSLVSRYTNSTASSQCKEN 205
           LRP+T F  Y +L++ +L   GD V++ +G   L+    +    S  K N
Sbjct: 701 LRPVTFFNGYSDLMSKMLSASGDPVSVVKGLILLIDHSQDIQLQSGLKAN 750


>sp|P55157|MTP_HUMAN Microsomal triglyceride transfer protein large subunit OS=Homo
           sapiens GN=MTTP PE=1 SV=1
          Length = 894

 Score = 31.2 bits (69), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 156 LRPITVFRPYEELVTAILPLGGDIVTIGRGYRSLVSRYTNSTASSQCKEN 205
           LRP+T F  Y +L++ +L   GD +++ +G   L+         S  K N
Sbjct: 701 LRPVTFFNGYSDLMSKMLSASGDPISVVKGLILLIDHSQELQLQSGLKAN 750


>sp|O94289|LUB1_SCHPO Ubiquitin homeostasis protein lub1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=lub1 PE=1 SV=2
          Length = 718

 Score = 31.2 bits (69), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 19  AITAVP-GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVS 65
           +++++P G+L CG SDG + I+T+ +  V   + + +F   +S   +S
Sbjct: 265 SVSSLPNGDLVCGSSDGFVRIFTVDKVRVAPTEVLKNFEERVSQFAIS 312


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,127,842
Number of Sequences: 539616
Number of extensions: 2954942
Number of successful extensions: 6334
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6328
Number of HSP's gapped (non-prelim): 7
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)