Query psy10905
Match_columns 219
No_of_seqs 29 out of 31
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 21:32:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3522|consensus 98.4 8.4E-07 1.8E-11 90.3 8.0 178 18-213 718-925 (925)
2 cd00200 WD40 WD40 domain, foun 97.2 0.034 7.3E-07 43.3 14.3 131 16-176 95-229 (289)
3 cd00200 WD40 WD40 domain, foun 96.5 0.3 6.4E-06 38.0 19.7 140 14-183 9-153 (289)
4 KOG0266|consensus 96.1 0.42 9.1E-06 45.2 16.3 142 7-174 239-384 (456)
5 KOG0274|consensus 95.9 0.38 8.3E-06 47.5 15.7 126 14-173 249-378 (537)
6 KOG0279|consensus 95.5 0.14 3E-06 47.8 10.3 100 30-152 210-311 (315)
7 KOG1273|consensus 95.2 0.21 4.6E-06 47.6 10.5 38 136-173 165-203 (405)
8 KOG0294|consensus 94.8 0.76 1.7E-05 43.7 13.1 139 25-176 98-259 (362)
9 PTZ00421 coronin; Provisional 93.9 6.7 0.00015 38.2 18.2 139 17-183 78-230 (493)
10 PTZ00420 coronin; Provisional 93.9 7.2 0.00016 39.0 18.4 138 17-183 77-233 (568)
11 PF13360 PQQ_2: PQQ-like domai 93.7 3.3 7.1E-05 33.8 13.9 114 24-163 36-149 (238)
12 PF13360 PQQ_2: PQQ-like domai 93.3 3.4 7.5E-05 33.7 12.8 100 33-161 2-101 (238)
13 KOG0310|consensus 93.3 1.2 2.5E-05 44.1 11.3 136 6-151 144-306 (487)
14 PF03178 CPSF_A: CPSF A subuni 93.0 3.3 7.1E-05 36.7 13.1 125 34-189 62-196 (321)
15 KOG0305|consensus 92.8 1.4 3.1E-05 43.5 11.4 120 77-218 189-316 (484)
16 TIGR03300 assembly_YfgL outer 92.8 2.8 6.1E-05 37.6 12.5 124 21-168 187-311 (377)
17 PLN00181 protein SPA1-RELATED; 92.6 13 0.00027 37.6 18.5 123 25-177 546-672 (793)
18 KOG2106|consensus 92.5 1 2.2E-05 45.2 9.9 102 17-149 249-352 (626)
19 KOG1036|consensus 92.2 2.6 5.6E-05 39.8 11.7 135 10-176 50-187 (323)
20 KOG3522|consensus 92.2 0.45 9.8E-06 49.8 7.4 111 25-152 636-746 (925)
21 TIGR03300 assembly_YfgL outer 91.5 3.4 7.4E-05 37.0 11.5 104 20-155 61-164 (377)
22 KOG4378|consensus 91.2 1.7 3.6E-05 43.8 9.8 120 25-173 178-300 (673)
23 PF02239 Cytochrom_D1: Cytochr 90.8 14 0.0003 34.5 16.0 130 7-159 28-163 (369)
24 PLN00181 protein SPA1-RELATED; 90.8 14 0.00031 37.2 16.1 124 17-162 620-746 (793)
25 TIGR03866 PQQ_ABC_repeats PQQ- 90.3 9.1 0.0002 31.4 15.3 115 25-163 169-288 (300)
26 TIGR02658 TTQ_MADH_Hv methylam 89.9 8.8 0.00019 36.3 13.0 129 25-162 58-236 (352)
27 KOG0646|consensus 89.8 11 0.00024 37.3 13.9 117 17-159 126-252 (476)
28 PRK11138 outer membrane biogen 89.2 7.3 0.00016 35.6 11.7 107 24-163 256-362 (394)
29 KOG0315|consensus 89.2 3.3 7.2E-05 38.6 9.4 120 25-173 96-222 (311)
30 KOG1587|consensus 88.8 9.6 0.00021 38.2 13.0 149 13-176 241-408 (555)
31 KOG4499|consensus 88.3 3 6.6E-05 38.8 8.5 49 74-143 222-273 (310)
32 KOG1240|consensus 87.9 5.8 0.00012 43.5 11.3 116 17-152 1101-1223(1431)
33 KOG0296|consensus 87.5 1.1 2.4E-05 43.2 5.3 61 29-100 303-363 (399)
34 KOG0266|consensus 87.2 27 0.00059 33.1 15.1 128 17-173 206-341 (456)
35 KOG3881|consensus 87.2 21 0.00047 34.8 13.8 141 25-194 161-314 (412)
36 KOG0296|consensus 86.5 15 0.00033 35.6 12.3 151 25-184 203-388 (399)
37 KOG2321|consensus 84.2 8 0.00017 39.6 9.7 132 25-175 146-280 (703)
38 TIGR02658 TTQ_MADH_Hv methylam 83.1 17 0.00037 34.4 11.0 112 25-162 207-338 (352)
39 TIGR03866 PQQ_ABC_repeats PQQ- 82.7 25 0.00054 28.8 15.3 103 30-163 7-112 (300)
40 PF13570 PQQ_3: PQQ-like domai 82.5 1.7 3.6E-05 27.7 2.9 26 130-155 15-40 (40)
41 PRK11138 outer membrane biogen 82.4 17 0.00038 33.1 10.5 115 21-157 66-181 (394)
42 KOG0646|consensus 82.2 5.1 0.00011 39.6 7.3 90 7-102 210-316 (476)
43 PF08596 Lgl_C: Lethal giant l 81.3 6.3 0.00014 37.5 7.5 82 77-163 16-122 (395)
44 PF02239 Cytochrom_D1: Cytochr 81.0 45 0.00098 31.2 12.9 116 32-176 14-137 (369)
45 KOG0274|consensus 80.3 40 0.00088 33.5 12.9 133 9-174 286-421 (537)
46 KOG4547|consensus 80.1 31 0.00067 34.9 12.0 117 29-174 75-192 (541)
47 KOG0263|consensus 79.3 12 0.00026 38.8 9.1 73 84-177 556-631 (707)
48 KOG0299|consensus 78.3 10 0.00022 37.6 7.9 106 61-173 142-251 (479)
49 KOG2055|consensus 78.1 13 0.00028 37.1 8.6 117 25-175 317-441 (514)
50 KOG2110|consensus 77.6 39 0.00084 32.9 11.4 69 87-173 108-180 (391)
51 KOG0306|consensus 74.8 78 0.0017 33.6 13.4 133 10-168 61-257 (888)
52 KOG2048|consensus 74.7 80 0.0017 32.9 13.3 134 14-155 25-185 (691)
53 KOG0282|consensus 73.6 20 0.00044 35.8 8.7 97 29-152 232-328 (503)
54 PF05096 Glu_cyclase_2: Glutam 72.5 23 0.00049 32.6 8.2 83 20-109 135-219 (264)
55 KOG4714|consensus 72.3 23 0.00049 33.4 8.2 112 25-153 193-317 (319)
56 KOG0318|consensus 71.7 1E+02 0.0023 31.5 13.1 122 29-176 208-330 (603)
57 KOG0319|consensus 71.1 17 0.00038 37.9 7.8 151 12-176 145-333 (775)
58 KOG0319|consensus 71.0 21 0.00045 37.3 8.4 102 17-145 108-214 (775)
59 KOG0299|consensus 69.7 16 0.00035 36.2 7.0 145 17-184 145-305 (479)
60 KOG1409|consensus 69.4 49 0.0011 32.2 10.0 127 18-174 72-205 (404)
61 KOG0322|consensus 67.7 2.9 6.4E-05 39.2 1.5 53 124-176 12-66 (323)
62 PF00400 WD40: WD domain, G-be 66.6 13 0.00028 22.3 3.8 27 14-40 11-39 (39)
63 KOG1539|consensus 66.1 1.9E+02 0.0042 31.0 14.4 48 129-176 162-212 (910)
64 cd00216 PQQ_DH Dehydrogenases 64.8 83 0.0018 30.2 10.7 115 22-155 59-184 (488)
65 PTZ00421 coronin; Provisional 61.2 1.7E+02 0.0037 28.7 17.3 77 17-102 128-207 (493)
66 PF03178 CPSF_A: CPSF A subuni 61.0 1.2E+02 0.0026 26.9 14.1 112 14-154 88-202 (321)
67 KOG0649|consensus 59.6 46 0.00099 31.3 7.6 90 7-101 55-152 (325)
68 smart00564 PQQ beta-propeller 59.5 17 0.00036 21.5 3.3 23 134-156 4-26 (33)
69 KOG0318|consensus 56.6 93 0.002 31.8 9.6 83 25-115 456-547 (603)
70 PF00780 CNH: CNH domain; Int 56.0 32 0.0007 29.2 5.7 50 133-185 4-56 (275)
71 TIGR02276 beta_rpt_yvtn 40-res 55.8 41 0.00089 20.5 4.8 32 74-105 3-34 (42)
72 KOG0283|consensus 55.5 2.2E+02 0.0048 29.9 12.3 130 64-217 412-579 (712)
73 KOG4328|consensus 54.4 74 0.0016 31.9 8.5 117 14-152 186-307 (498)
74 KOG0315|consensus 53.4 1.8E+02 0.004 27.4 10.4 23 25-47 137-159 (311)
75 PF03022 MRJP: Major royal jel 52.7 43 0.00093 30.2 6.2 64 84-156 33-98 (287)
76 KOG0289|consensus 52.3 1.4E+02 0.0031 29.9 10.0 89 17-136 350-442 (506)
77 KOG4190|consensus 51.5 28 0.00062 36.1 5.3 77 82-172 848-924 (1034)
78 KOG0639|consensus 48.4 1.5E+02 0.0032 30.6 9.6 123 25-175 432-560 (705)
79 PF14783 BBS2_Mid: Ciliary BBS 48.1 1.5E+02 0.0032 24.0 12.0 28 17-46 2-35 (111)
80 PF00780 CNH: CNH domain; Int 47.9 1.7E+02 0.0037 24.8 13.1 129 17-168 38-179 (275)
81 KOG0284|consensus 47.6 66 0.0014 31.9 6.9 89 85-194 244-336 (464)
82 KOG0308|consensus 47.1 1.4E+02 0.0031 31.3 9.4 82 83-176 138-223 (735)
83 PF14783 BBS2_Mid: Ciliary BBS 45.6 32 0.00069 27.9 3.8 29 128-156 1-35 (111)
84 KOG0265|consensus 44.8 1.7E+02 0.0038 28.0 9.0 117 15-151 175-304 (338)
85 PF06433 Me-amine-dh_H: Methyl 44.7 1.3E+02 0.0029 28.8 8.3 110 27-162 199-328 (342)
86 PF12275 DUF3616: Protein of u 43.0 3E+02 0.0064 26.1 11.8 71 73-143 67-186 (330)
87 PF07494 Reg_prop: Two compone 43.0 34 0.00074 19.9 2.7 19 126-144 4-23 (24)
88 PF05096 Glu_cyclase_2: Glutam 42.5 1.4E+02 0.0029 27.6 7.8 71 82-173 65-136 (264)
89 PRK11028 6-phosphogluconolacto 42.3 1.4E+02 0.0031 26.1 7.8 56 31-93 9-65 (330)
90 KOG0271|consensus 40.8 60 0.0013 32.2 5.5 65 17-101 381-447 (480)
91 PF08450 SGL: SMP-30/Gluconola 40.6 2.2E+02 0.0048 23.9 15.2 94 25-144 146-245 (246)
92 cd00216 PQQ_DH Dehydrogenases 40.4 3.4E+02 0.0074 26.0 11.2 67 85-162 366-432 (488)
93 KOG0281|consensus 40.1 58 0.0012 32.1 5.2 85 4-101 183-273 (499)
94 KOG0291|consensus 40.0 87 0.0019 33.4 6.7 68 25-99 405-472 (893)
95 KOG0308|consensus 39.5 1.2E+02 0.0027 31.7 7.6 118 17-167 216-337 (735)
96 KOG0305|consensus 38.5 4.2E+02 0.0092 26.5 13.8 151 7-188 211-367 (484)
97 KOG0278|consensus 37.8 1.1E+02 0.0023 29.1 6.4 107 25-161 113-220 (334)
98 PF01011 PQQ: PQQ enzyme repea 37.2 41 0.00088 21.2 2.6 21 137-157 1-21 (38)
99 KOG0310|consensus 37.0 4.6E+02 0.0099 26.5 11.0 124 25-177 81-207 (487)
100 KOG0291|consensus 36.1 5.9E+02 0.013 27.5 14.4 140 5-173 341-485 (893)
101 KOG0286|consensus 35.7 4.1E+02 0.0089 25.6 11.6 51 124-174 271-323 (343)
102 KOG3881|consensus 35.7 86 0.0019 30.8 5.6 72 16-105 249-332 (412)
103 PF08309 LVIVD: LVIVD repeat; 35.6 71 0.0015 21.4 3.7 27 129-155 4-30 (42)
104 KOG0265|consensus 35.4 4.2E+02 0.009 25.6 13.3 160 6-175 39-225 (338)
105 KOG0288|consensus 34.8 2.7E+02 0.0059 27.8 8.9 78 17-103 344-427 (459)
106 KOG4283|consensus 34.3 1.4E+02 0.0031 28.8 6.8 76 25-100 259-341 (397)
107 KOG0294|consensus 34.0 2.2E+02 0.0047 27.6 7.9 82 10-104 204-297 (362)
108 PRK11028 6-phosphogluconolacto 32.4 3.4E+02 0.0074 23.7 13.9 63 25-94 47-111 (330)
109 KOG4714|consensus 32.3 76 0.0017 30.0 4.6 119 25-169 102-226 (319)
110 PF12341 DUF3639: Protein of u 32.3 58 0.0013 20.3 2.6 21 128-148 3-23 (27)
111 PF03736 EPTP: EPTP domain; I 30.6 29 0.00063 22.8 1.2 10 83-92 35-44 (44)
112 KOG0649|consensus 30.6 4.8E+02 0.01 24.8 9.6 85 17-121 159-248 (325)
113 PTZ00420 coronin; Provisional 30.5 5.8E+02 0.013 25.8 17.4 76 17-102 128-206 (568)
114 KOG2444|consensus 29.4 66 0.0014 29.5 3.6 63 26-94 116-178 (238)
115 KOG0321|consensus 29.3 3.9E+02 0.0085 28.1 9.3 132 25-176 231-370 (720)
116 PF08596 Lgl_C: Lethal giant l 29.1 5.2E+02 0.011 24.7 11.5 142 19-176 8-202 (395)
117 KOG2106|consensus 28.5 4.8E+02 0.01 26.9 9.6 81 84-181 221-303 (626)
118 COG3292 Predicted periplasmic 26.9 2.6E+02 0.0057 29.1 7.6 109 19-157 211-321 (671)
119 KOG0279|consensus 26.8 4.2E+02 0.0092 25.3 8.4 44 2-46 222-266 (315)
120 KOG0313|consensus 25.3 3.2E+02 0.0069 27.1 7.5 80 10-96 296-379 (423)
121 KOG0272|consensus 25.2 3.2E+02 0.007 27.3 7.6 78 14-99 345-424 (459)
122 PF06350 HSL_N: Hormone-sensit 25.1 23 0.0005 33.3 -0.1 13 179-191 64-76 (313)
123 KOG1310|consensus 24.9 1.1E+02 0.0024 31.8 4.5 71 15-92 94-177 (758)
124 KOG0307|consensus 24.3 84 0.0018 34.3 3.8 23 81-103 272-294 (1049)
125 PF04491 Pox_T4_N: Poxvirus T4 24.3 47 0.001 23.3 1.3 15 177-191 29-43 (46)
126 KOG1332|consensus 24.0 1.4E+02 0.0029 28.2 4.6 22 25-46 117-138 (299)
127 TIGR03075 PQQ_enz_alc_DH PQQ-d 23.4 7.2E+02 0.016 24.5 11.6 121 21-159 66-194 (527)
128 KOG0273|consensus 23.4 5E+02 0.011 26.4 8.6 111 29-172 252-365 (524)
129 PF07569 Hira: TUP1-like enhan 23.1 3E+02 0.0066 23.9 6.5 36 62-101 13-48 (219)
130 KOG1034|consensus 22.9 2.3E+02 0.005 27.6 6.1 61 29-94 324-384 (385)
131 KOG1407|consensus 22.5 6.8E+02 0.015 23.9 11.4 145 17-168 23-191 (313)
132 KOG1063|consensus 21.4 9.1E+02 0.02 25.8 10.2 74 26-108 71-148 (764)
133 KOG1539|consensus 21.2 1.1E+03 0.024 25.7 13.9 157 16-177 116-299 (910)
134 PF10838 DUF2677: Protein of u 21.1 5E+02 0.011 22.6 7.1 79 49-150 13-96 (161)
135 PF14779 BBS1: Ciliary BBSome 21.0 1.5E+02 0.0032 27.3 4.3 32 125-156 175-215 (257)
136 PF06433 Me-amine-dh_H: Methyl 20.7 6.2E+02 0.013 24.3 8.4 33 70-102 297-329 (342)
137 PF11635 Med16: Mediator compl 20.2 2.7E+02 0.0058 28.8 6.3 52 125-176 258-311 (753)
138 KOG0771|consensus 20.0 2.5E+02 0.0054 27.6 5.7 53 124-176 279-334 (398)
No 1
>KOG3522|consensus
Probab=98.38 E-value=8.4e-07 Score=90.33 Aligned_cols=178 Identities=20% Similarity=0.283 Sum_probs=127.3
Q ss_pred eeeeeecceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccccee
Q psy10905 18 HAITAVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSI 97 (219)
Q Consensus 18 ~s~a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I 97 (219)
+.+--|+--||| +|.|+|.+ ...+.-.--+.-..+ +++ +.+|.. +.-.|||-+.-..-+.-++.+|++-
T Consensus 718 ~kllsv~~rl~c---~gl~~V~~--~~~l~v~~~v~~~q~--~k~-~~~~~v---S~~~~~~~vk~~~~~~~~H~~~~~~ 786 (925)
T KOG3522|consen 718 GKLLSVPGRLWC---QGLLMVLT--SLTLLVALPVPRLQD--SKV-TGRMMV---SYHAVWSPVKFSAHATALHEKTKDK 786 (925)
T ss_pred cccccCCCcccc---cceeEEec--cceeEEEeeeeeccC--Cce-eeeeee---ecccccccchhhhhhhhhccchHhh
Confidence 555556689999 69999984 334544444444444 333 444441 4446999999999999999999998
Q ss_pred eeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeecccccceeEEeeec-
Q psy10905 98 VNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPLG- 176 (219)
Q Consensus 98 ~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~l~- 176 (219)
....|.-.=+| .++.--| +=.++++.+++|+..+++-+|+||+.|.++.--++. -..=..|.++|++..-+.
T Consensus 787 ~~e~~~~~p~~--~~~~~~D--ai~~~~~~~~~s~~~~~~~iW~G~S~G~~~~~~~~~---t~~g~~~~~H~~~~~~~~~ 859 (925)
T KOG3522|consen 787 SREVLAPPPVP--QMLDQKD--AIIKAACLRSTSLLDCDALIWLGTSAGVMLTKPDLS---TGSGSGHTGHVRFLLEVRS 859 (925)
T ss_pred hhhccCCCCCc--hhhhccc--hhhhchhhhhccccCchhheeeccccceeeeccCCC---CCCCCccccceeeeEeeec
Confidence 88888877444 3333322 223789999999999999999999999998766554 555678899999988664
Q ss_pred -C---------------------------eEEEeccccccceeecccCc-cccccCCCeEEEEeec
Q psy10905 177 -G---------------------------DIVTIGRGYRSLVSRYTNST-ASSQCKENHFALLWSS 213 (219)
Q Consensus 177 -g---------------------------~l~TiG~GyR~L~~r~~~~~-~s~~~~~~~~~llWr~ 213 (219)
| -|++.|+|||++...=.+.+ ........+|++|||.
T Consensus 860 ~~~~~~~~~~p~s~rS~~~r~~k~~~~~~Lvi~GG~G~~~~~~s~~~~~~E~a~~~~~~~l~l~~i 925 (925)
T KOG3522|consen 860 EGTIYDLLKDPVSLRSKAHRAKKAKASSALVISGGDGYEDFRKSGQPSQSELAGTDSTNHLLLWNI 925 (925)
T ss_pred CceehhcCCCcccccchhhccccccCCceEEEeCCcchHHHHhcCCCchhhhCccccccceeeecC
Confidence 1 19999999999872222222 1123678899999984
No 2
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.16 E-value=0.034 Score=43.33 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=87.7
Q ss_pred eeeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecc
Q psy10905 16 VLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQ 93 (219)
Q Consensus 16 ~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~ 93 (219)
.+.+++..+ .-+-+|..+|.|.+|++++........ .|.+ .+..+.-.+. . ........+..|+.||..
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~------~i~~~~~~~~-~-~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTD------WVNSVAFSPD-G-TFVASSSQDGTIKLWDLR 165 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCC------cEEEEEEcCc-C-CEEEEEcCCCcEEEEEcc
Confidence 356666655 455556559999999998543332111 3432 3555653332 2 233333346789999998
Q ss_pred cceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecc--eEEEecceeEEEEEecCcceeeeeecccccceeE
Q psy10905 94 ARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDT--CLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTA 171 (219)
Q Consensus 94 tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~--~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~ 171 (219)
+.+....++. ....|++++...+ ++++|..-|.|.+-+..+.+++..+.++.+.+.+
T Consensus 166 ~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 224 (289)
T cd00200 166 TGKCVATLTG---------------------HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224 (289)
T ss_pred ccccceeEec---------------------CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence 7776665541 1225667777664 8999999999999999999999999999999988
Q ss_pred Eeeec
Q psy10905 172 ILPLG 176 (219)
Q Consensus 172 Ii~l~ 176 (219)
+..-+
T Consensus 225 ~~~~~ 229 (289)
T cd00200 225 VAFSP 229 (289)
T ss_pred EEEcC
Confidence 87665
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.46 E-value=0.3 Score=38.04 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=89.9
Q ss_pred Cceeeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEe
Q psy10905 14 SSVLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWD 91 (219)
Q Consensus 14 ~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~ 91 (219)
..+|.+++.-+ ..|.+|..+|.|.+|++++...... .-.|.. .+..+.-.+ +...+.+.-. +-.|+.||
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-~~~~~~------~i~~~~~~~-~~~~l~~~~~-~~~i~i~~ 79 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LKGHTG------PVRDVAASA-DGTYLASGSS-DKTIRLWD 79 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-EecCCc------ceeEEEECC-CCCEEEEEcC-CCeEEEEE
Confidence 35578888777 7889998899999999986543221 112322 233332211 2233444433 56799999
Q ss_pred cccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec--ceEEEecceeEEEEEecCcceeeeeecccccce
Q psy10905 92 TQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD--TCLYIGTTWGCIVVAEKDSLRPITVFRPYEELV 169 (219)
Q Consensus 92 ~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~--~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V 169 (219)
.++.+...++. .....|+++.... ..++.|..-|.|.+-+..+.+++..+.++.+.|
T Consensus 80 ~~~~~~~~~~~---------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 138 (289)
T cd00200 80 LETGECVRTLT---------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138 (289)
T ss_pred cCcccceEEEe---------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence 98875444433 1123567777765 344444448999999999999999999999999
Q ss_pred eEEeeec-CeEEEec
Q psy10905 170 TAILPLG-GDIVTIG 183 (219)
Q Consensus 170 ~~Ii~l~-g~l~TiG 183 (219)
+.+..-+ +.++..|
T Consensus 139 ~~~~~~~~~~~l~~~ 153 (289)
T cd00200 139 NSVAFSPDGTFVASS 153 (289)
T ss_pred EEEEEcCcCCEEEEE
Confidence 9887666 4433333
No 4
>KOG0266|consensus
Probab=96.08 E-value=0.42 Score=45.21 Aligned_cols=142 Identities=21% Similarity=0.247 Sum_probs=102.8
Q ss_pred EEEeeCCCceeeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCC
Q psy10905 7 VLTELGASSVLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPG 84 (219)
Q Consensus 7 ~ltelg~~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg 84 (219)
..+.-|-...++++++.+ ..|=.|-.|+.|.||+++.+.....-.. |.+ +|+.+... .+...+++. ...
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-hs~------~is~~~f~-~d~~~l~s~-s~d 309 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-HSD------GISGLAFS-PDGNLLVSA-SYD 309 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-cCC------ceEEEEEC-CCCCEEEEc-CCC
Confidence 445557777788888888 7899999999999999997443322222 322 34545432 356678888 558
Q ss_pred cEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee--cceEEEecceeEEEEEecCcceeeeee
Q psy10905 85 CSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL--DTCLYIGTTWGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 85 ~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~--~~~LYIGTtwG~iiVaea~tLrPit~f 162 (219)
-.|..||+.++++. |.|.+..-|+ .+ -|+..+-. +.++++|+--+.+-.-|-...+....+
T Consensus 310 ~~i~vwd~~~~~~~----~~~~~~~~~~------------~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 310 GTIRVWDLETGSKL----CLKLLSGAEN------------SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred ccEEEEECCCCcee----eeecccCCCC------------CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 99999999999988 5555553332 22 45555553 488889999999999999999999999
Q ss_pred cccccceeEEee
Q psy10905 163 RPYEELVTAILP 174 (219)
Q Consensus 163 rp~e~~V~~Ii~ 174 (219)
++|..++++|..
T Consensus 373 ~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 373 TGHSNLVRCIFS 384 (456)
T ss_pred cccCCcceeEec
Confidence 999999766653
No 5
>KOG0274|consensus
Probab=95.93 E-value=0.38 Score=47.46 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=95.0
Q ss_pred Cceeeeeeee--cceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEe--CCcEEEE
Q psy10905 14 SSVLHAITAV--PGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVY--PGCSVYQ 89 (219)
Q Consensus 14 ~~~i~s~a~v--~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~--pg~~Vyq 89 (219)
...+.+++.. ..-|=.|-.|..+-||+.+.+. .-....-|.+. +.+|. .. -|.-+. -++.|+.
T Consensus 249 ~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-C~~~l~gh~st------v~~~~---~~---~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 249 FGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-CTHSLQGHTSS------VRCLT---ID---PFLLVSGSRDNTVKV 315 (537)
T ss_pred CCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-EEEEecCCCce------EEEEE---cc---CceEeeccCCceEEE
Confidence 3335667776 4777889889999999866433 32333346544 44454 11 233444 7899999
Q ss_pred EecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeecccccce
Q psy10905 90 WDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELV 169 (219)
Q Consensus 90 w~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V 169 (219)
|++++++.++-+- +-..+|.++.+.++.|+-|+.-|-|.|=+..++++++.+++|.+-|
T Consensus 316 W~v~n~~~l~l~~---------------------~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V 374 (537)
T KOG0274|consen 316 WDVTNGACLNLLR---------------------GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV 374 (537)
T ss_pred EeccCcceEEEec---------------------cccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence 9999888877542 2456788999999999999999999999999999999999999999
Q ss_pred eEEe
Q psy10905 170 TAIL 173 (219)
Q Consensus 170 ~~Ii 173 (219)
++++
T Consensus 375 ~sl~ 378 (537)
T KOG0274|consen 375 YSLI 378 (537)
T ss_pred EEEE
Confidence 9984
No 6
>KOG0279|consensus
Probab=95.52 E-value=0.14 Score=47.78 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=77.9
Q ss_pred cccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccccC
Q psy10905 30 GESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPC 109 (219)
Q Consensus 30 G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~Pc 109 (219)
|+.+|.++.|+|++..= -..+.|.++ |.-|+-+| .-.|-+.--+..|.-||.+++++...|...-.-|.
T Consensus 210 Ggkdg~~~LwdL~~~k~--lysl~a~~~------v~sl~fsp---nrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s 278 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKN--LYSLEAFDI------VNSLCFSP---NRYWLCAATATSIKIWDLESKAVVEELKLDGIGPS 278 (315)
T ss_pred CCCCceEEEEEccCCce--eEeccCCCe------EeeEEecC---CceeEeeccCCceEEEeccchhhhhhccccccccc
Confidence 88999999999996532 445555444 77777444 34788888888899999999999998887766662
Q ss_pred CCCcccccccccccccCceeeeEeee--cceEEEecceeEEEEEe
Q psy10905 110 SESLQSICIEEPLRQDQCHVTSVCIL--DTCLYIGTTWGCIVVAE 152 (219)
Q Consensus 110 SEsl~si~iee~l~~~~~qVtaL~~~--~~~LYIGTtwG~iiVae 152 (219)
+ .++..|-.+|+-+ +.-||=|-+-|.|.|-|
T Consensus 279 ~------------~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 279 S------------KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred c------------ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 2 4677777888887 78999999999998876
No 7
>KOG1273|consensus
Probab=95.18 E-value=0.21 Score=47.59 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=34.8
Q ss_pred cceEEEecceeEEEEEecCcceeeeeecccc-cceeEEe
Q psy10905 136 DTCLYIGTTWGCIVVAEKDSLRPITVFRPYE-ELVTAIL 173 (219)
Q Consensus 136 ~~~LYIGTtwG~iiVaea~tLrPit~frp~e-~~V~~Ii 173 (219)
+.+.|.||++|=|+|.+|.||..++-||=-. ..||.|+
T Consensus 165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~ 203 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQII 203 (405)
T ss_pred CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEE
Confidence 4899999999999999999999999999887 8888876
No 8
>KOG0294|consensus
Probab=94.83 E-value=0.76 Score=43.67 Aligned_cols=139 Identities=20% Similarity=0.214 Sum_probs=99.9
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
..|=.|..||.|+||+.+. ......+ +.-+.+|+.+.--|+. ..=-.|+-+-++..|+-.+++.--.+..+
T Consensus 98 shLlS~sdDG~i~iw~~~~--W~~~~sl-----K~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~ 168 (362)
T KOG0294|consen 98 SHLLSGSDDGHIIIWRVGS--WELLKSL-----KAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLK 168 (362)
T ss_pred hheeeecCCCcEEEEEcCC--eEEeeee-----cccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccC
Confidence 3899999999999995542 2211111 1124457777654433 45667788888899998888877777766
Q ss_pred c------cccCCCC-----ccccc------------ccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeee
Q psy10905 105 K------LVPCSES-----LQSIC------------IEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITV 161 (219)
Q Consensus 105 k------l~PcSEs-----l~si~------------iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~ 161 (219)
+ ..|-+|- -.-|+ ||. .+=+..+..+.+++|.+|-.-+.|.+-|.....|++-
T Consensus 169 ~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~ 244 (362)
T KOG0294|consen 169 NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN----PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTE 244 (362)
T ss_pred CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc----cccceeeeecCCceEEEecCCceEEEeccCCCcccee
Confidence 5 3454440 01112 232 2446778888889999999999999999999999999
Q ss_pred ecccccceeEEeeec
Q psy10905 162 FRPYEELVTAILPLG 176 (219)
Q Consensus 162 frp~e~~V~~Ii~l~ 176 (219)
|-.||..||.|.++.
T Consensus 245 ~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 245 FLAHENRVKDIASYT 259 (362)
T ss_pred eecchhheeeeEEEe
Confidence 999999999999886
No 9
>PTZ00421 coronin; Provisional
Probab=93.92 E-value=6.7 Score=38.21 Aligned_cols=139 Identities=16% Similarity=0.155 Sum_probs=89.0
Q ss_pred eeeeeeec---ceeeecccCCcEEEEEccCCceEe------eeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEE
Q psy10905 17 LHAITAVP---GELWCGESDGNISIYTMSEHSVTS------HDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSV 87 (219)
Q Consensus 17 i~s~a~v~---~eLW~G~~~g~Isi~~l~~~~vs~------~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~V 87 (219)
+.+++.-+ ..|=+|..||.|.||++.++.+.. ...-.| +..|..+.-.+.+...+.+. .-+..|
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH------~~~V~~l~f~P~~~~iLaSg-s~DgtV 150 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH------TKKVGIVSFHPSAMNVLASA-GADMVV 150 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC------CCcEEEEEeCcCCCCEEEEE-eCCCEE
Confidence 55666543 568889999999999998654321 111123 22455665444333444444 446779
Q ss_pred EEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee--cceEEEecceeEEEEEecCcceeeeeeccc
Q psy10905 88 YQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL--DTCLYIGTTWGCIVVAEKDSLRPITVFRPY 165 (219)
Q Consensus 88 yqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~--~~~LYIGTtwG~iiVaea~tLrPit~frp~ 165 (219)
..||.++++....+. .| ...|++++.. +++|..|..-|-|-+-|.-+-+++..+..|
T Consensus 151 rIWDl~tg~~~~~l~-----------------~h----~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 151 NVWDVERGKAVEVIK-----------------CH----SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEEECCCCeEEEEEc-----------------CC----CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 999999887654332 11 2246677664 467888988999999999999999888888
Q ss_pred ccceeEEeee--c-CeEEEec
Q psy10905 166 EELVTAILPL--G-GDIVTIG 183 (219)
Q Consensus 166 e~~V~~Ii~l--~-g~l~TiG 183 (219)
.+.+...+.. + +.++|.|
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEe
Confidence 8764322222 2 3477776
No 10
>PTZ00420 coronin; Provisional
Probab=93.91 E-value=7.2 Score=39.02 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=84.4
Q ss_pred eeeeeeec---ceeeecccCCcEEEEEccCCce--E----ee-eeeeccCCccccceeEEEeecCCCCceEEEEEeCCcE
Q psy10905 17 LHAITAVP---GELWCGESDGNISIYTMSEHSV--T----SH-DTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCS 86 (219)
Q Consensus 17 i~s~a~v~---~eLW~G~~~g~Isi~~l~~~~v--s----~~-~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~ 86 (219)
+.+++.-+ .-|-+|..||.|.||++.++.. . .. ..-.|. ..|..++-.+.+ ..+.....-+-.
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~------~~V~sVaf~P~g-~~iLaSgS~Dgt 149 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK------KKISIIDWNPMN-YYIMCSSGFDSF 149 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC------CcEEEEEECCCC-CeEEEEEeCCCe
Confidence 55555543 4688899999999999985431 1 00 111232 235555544432 233333344668
Q ss_pred EEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee--cceEEEecceeEEEEEecCcceeeeeecc
Q psy10905 87 VYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL--DTCLYIGTTWGCIVVAEKDSLRPITVFRP 164 (219)
Q Consensus 87 Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~--~~~LYIGTtwG~iiVaea~tLrPit~frp 164 (219)
|..||..+++....++.. ..|++++.. +..|..|..-|-|-+-|.-+.+++..+..
T Consensus 150 IrIWDl~tg~~~~~i~~~----------------------~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 150 VNIWDIENEKRAFQINMP----------------------KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEECCCCcEEEEEecC----------------------CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 899999998766544311 136666664 35554455567899999999999999999
Q ss_pred cccceeEEe--e--ecC---eEEEec
Q psy10905 165 YEELVTAIL--P--LGG---DIVTIG 183 (219)
Q Consensus 165 ~e~~V~~Ii--~--l~g---~l~TiG 183 (219)
|++.+.+.. + +.+ .|+|.|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEE
Confidence 998754322 2 222 377776
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.68 E-value=3.3 Score=33.82 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=78.8
Q ss_pred cceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeec
Q psy10905 24 PGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDC 103 (219)
Q Consensus 24 ~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~ 103 (219)
+..++++..++.|..++.+++.+.+...+ +++.. .. .++ ....|+.....| .+|-+|.+|++++-+.+-
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~-~~---~~~----~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPIS-GA---PVV----DGGRVYVGTSDG-SLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGG-SG---EEE----ETTEEEEEETTS-EEEEEETTTSCEEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccc-ce---eee----ccccccccccee-eeEecccCCcceeeeecc
Confidence 38899998899999999999998888877 22211 11 123 444576666555 999999999999887432
Q ss_pred cccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeec
Q psy10905 104 SKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFR 163 (219)
Q Consensus 104 skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~fr 163 (219)
... |. +......+..+.++++|+++.-|-|..+++.+=+++--+.
T Consensus 105 ~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 105 TSS-PP--------------AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -SS-CT--------------CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred ccc-cc--------------cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence 220 11 1123334566669999999999999999988777655443
No 12
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.34 E-value=3.4 Score=33.70 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=70.9
Q ss_pred CCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccccCCCC
Q psy10905 33 DGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPCSES 112 (219)
Q Consensus 33 ~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEs 112 (219)
+|.|+.++++++..-+...+... . +..+..-+ .+...|+.. ..+..+|.||..|++++-+.++.+ |
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~---~-~~~~~~~~---~~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~--~---- 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG---I-GGPVATAV---PDGGRVYVA-SGDGNLYALDAKTGKVLWRFDLPG--P---- 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS---C-SSEEETEE---EETTEEEEE-ETTSEEEEEETTTSEEEEEEECSS--C----
T ss_pred CCEEEEEECCCCCEEEEEECCCC---C-CCccceEE---EeCCEEEEE-cCCCEEEEEECCCCCEEEEeeccc--c----
Confidence 68899999988888888766221 1 11121111 144456666 689999999999999999999854 2
Q ss_pred cccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeee
Q psy10905 113 LQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITV 161 (219)
Q Consensus 113 l~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~ 161 (219)
++. + ....++.+|+++.-|-|...|+.+-.++=-
T Consensus 68 -----~~~---~-------~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 68 -----ISG---A-------PVVDGGRVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp -----GGS---G-------EEEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred -----ccc---e-------eeecccccccccceeeeEecccCCcceeee
Confidence 111 0 467789999999989999999777766555
No 13
>KOG0310|consensus
Probab=93.26 E-value=1.2 Score=44.09 Aligned_cols=136 Identities=21% Similarity=0.306 Sum_probs=88.2
Q ss_pred eEEEeeCC-Cceeeeeeeec-c--eeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEE
Q psy10905 6 FVLTELGA-SSVLHAITAVP-G--ELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYV 81 (219)
Q Consensus 6 f~ltelg~-~~~i~s~a~v~-~--eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv 81 (219)
+|..||-. -.-++|.+..+ . =+=.|.=||.|..|+.+... +..-.+||..| |..++.=|+. =-.+.
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~p------Ve~vl~lpsg---s~ias 213 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCP------VESVLALPSG---SLIAS 213 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCc------eeeEEEcCCC---CEEEE
Confidence 34445544 33378988888 2 48899999999999999776 88889999777 3333321111 23556
Q ss_pred eCCcEEEEEecc-cceeeeeee-------ccccccCCCCcccccccccccccC-------------ceeeeEeeec--ce
Q psy10905 82 YPGCSVYQWDTQ-ARSIVNKLD-------CSKLVPCSESLQSICIEEPLRQDQ-------------CHVTSVCILD--TC 138 (219)
Q Consensus 82 ~pg~~Vyqw~~~-tr~I~~~LD-------~skl~PcSEsl~si~iee~l~~~~-------------~qVtaL~~~~--~~ 138 (219)
--|..|..||.. .||.+.+.- |-.+.--+.-|-|-+++.|..... .-|=+|+++. .-
T Consensus 214 AgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 214 AGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQT 293 (487)
T ss_pred cCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCce
Confidence 678999999998 455544332 222222233444555777766544 4455677765 67
Q ss_pred EEEecceeEEEEE
Q psy10905 139 LYIGTTWGCIVVA 151 (219)
Q Consensus 139 LYIGTtwG~iiVa 151 (219)
++||-+-|.+.+-
T Consensus 294 ~viGmsnGlv~~r 306 (487)
T KOG0310|consen 294 VVIGMSNGLVSIR 306 (487)
T ss_pred EEEecccceeeee
Confidence 8888888887776
No 14
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.00 E-value=3.3 Score=36.73 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=75.1
Q ss_pred CcEEEEEccCC-----ceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecccccc
Q psy10905 34 GNISIYTMSEH-----SVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVP 108 (219)
Q Consensus 34 g~Isi~~l~~~-----~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~P 108 (219)
|+|.+|.++++ .+.-...... +.+|+.++. -...+-.++ |.+|+.|+-...+ +|+|
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~------~g~V~ai~~---~~~~lv~~~--g~~l~v~~l~~~~--------~l~~ 122 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEV------KGPVTAICS---FNGRLVVAV--GNKLYVYDLDNSK--------TLLK 122 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEE------SS-EEEEEE---ETTEEEEEE--TTEEEEEEEETTS--------SEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEee------cCcceEhhh---hCCEEEEee--cCEEEEEEccCcc--------cchh
Confidence 99999999984 3443333322 345777763 233354555 4555554444444 4555
Q ss_pred CCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEE--e--cCcceeeeeecccccceeEEeee-cCeEEEec
Q psy10905 109 CSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVA--E--KDSLRPITVFRPYEELVTAILPL-GGDIVTIG 183 (219)
Q Consensus 109 cSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVa--e--a~tLrPit~frp~e~~V~~Ii~l-~g~l~TiG 183 (219)
..+. .....|++|...+++++||..-.-+.++ + ..+|.+++- -+.--.|.++..| +++.+-+|
T Consensus 123 ~~~~-----------~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 123 KAFY-----------DSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEE------------BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEE
T ss_pred hhee-----------cceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEE
Confidence 3321 2344999999999999999987777766 3 345766653 3335557788777 66556666
Q ss_pred cccccc
Q psy10905 184 RGYRSL 189 (219)
Q Consensus 184 ~GyR~L 189 (219)
+-+.++
T Consensus 191 D~~gnl 196 (321)
T PF03178_consen 191 DKDGNL 196 (321)
T ss_dssp ETTSEE
T ss_pred cCCCeE
Confidence 666655
No 15
>KOG0305|consensus
Probab=92.85 E-value=1.4 Score=43.46 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=86.1
Q ss_pred EEEEEeCCcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee--cceEEEecceeEEEEEecC
Q psy10905 77 VWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL--DTCLYIGTTWGCIVVAEKD 154 (219)
Q Consensus 77 Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~--~~~LYIGTtwG~iiVaea~ 154 (219)
=+.++--|+.||.|+..+.+++.-.|.. ..+||++.-. +..|=|||.-|.|-+-|..
T Consensus 189 n~laValg~~vylW~~~s~~v~~l~~~~---------------------~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGSVTELCSFG---------------------EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK 247 (484)
T ss_pred CeEEEEecceEEEEecCCCceEEeEecC---------------------CCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence 3678889999999999999965543332 4578898887 6999999999999999999
Q ss_pred cceeeeeecc-cccceeEEeeecCeEEEeccccccceeecccCc---cc--cccCCCeEEEEeecCCccc
Q psy10905 155 SLRPITVFRP-YEELVTAILPLGGDIVTIGRGYRSLVSRYTNST---AS--SQCKENHFALLWSSQNWAA 218 (219)
Q Consensus 155 tLrPit~frp-~e~~V~~Ii~l~g~l~TiG~GyR~L~~r~~~~~---~s--~~~~~~~~~llWr~~~W~~ 218 (219)
+.+-+.-++- |.+.|-++-=- +.+++.|.+=+..+.+=...+ .. .-.+...+-|=|..+++-.
T Consensus 248 ~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~l 316 (484)
T KOG0305|consen 248 EQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQL 316 (484)
T ss_pred hccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCee
Confidence 8888877777 77776654432 347777777666665544332 11 1234567777777777654
No 16
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.81 E-value=2.8 Score=37.56 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=75.6
Q ss_pred eeecceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecC-CCCceEEEEEeCCcEEEEEecccceeee
Q psy10905 21 TAVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSP-STSAWVWSYVYPGCSVYQWDTQARSIVN 99 (219)
Q Consensus 21 a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~-~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~ 99 (219)
++.+..+..|..+|++..++++++.+.+...+..+........+....+++ -....|+..- .+-.+|.+|.+|++++-
T Consensus 187 ~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 187 VIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRVLW 265 (377)
T ss_pred EEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE-cCCEEEEEECCCCcEEE
Confidence 344466778888899999988888777665543322100000000000000 0223455533 34579999999998877
Q ss_pred eeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeecccccc
Q psy10905 100 KLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEEL 168 (219)
Q Consensus 100 ~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~ 168 (219)
+.+... .+++.+.++++|+++.-|.|..+|+.+=+++--+.+..+.
T Consensus 266 ~~~~~~-----------------------~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 266 KRDASS-----------------------YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred eeccCC-----------------------ccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 665210 1245567899999999999999999887776555444443
No 17
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.62 E-value=13 Score=37.56 Aligned_cols=123 Identities=10% Similarity=0.139 Sum_probs=80.9
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
..|=+|..+|.|.+|++...... ...-.|.+ .|..++-.+.+.. +...-.-+..|+.||..+++....++..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~-~~~~~H~~------~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~ 617 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLV-TEMKEHEK------RVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGTIKTK 617 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEE-EEecCCCC------CEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence 45667888999999998865332 12223533 3666654332333 3333445678999999887765544311
Q ss_pred ccccCCCCcccccccccccccCceeeeEee---ecceEEEecceeEEEEEecCcce-eeeeecccccceeEEeeecC
Q psy10905 105 KLVPCSESLQSICIEEPLRQDQCHVTSVCI---LDTCLYIGTTWGCIVVAEKDSLR-PITVFRPYEELVTAILPLGG 177 (219)
Q Consensus 105 kl~PcSEsl~si~iee~l~~~~~qVtaL~~---~~~~LYIGTtwG~iiVaea~tLr-Pit~frp~e~~V~~Ii~l~g 177 (219)
..|.++.. .+..|..|..-|.|.+-|..+-+ |+..+..|...|..+.-.+|
T Consensus 618 ----------------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~ 672 (793)
T PLN00181 618 ----------------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS 672 (793)
T ss_pred ----------------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC
Confidence 13445544 24688899999999999976654 88888999999988866664
No 18
>KOG2106|consensus
Probab=92.54 E-value=1 Score=45.23 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=70.5
Q ss_pred eeeeeeec-ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCc-eEEEEEeCCcEEEEEeccc
Q psy10905 17 LHAITAVP-GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSA-WVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 17 i~s~a~v~-~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~-~Vwsyv~pg~~Vyqw~~~t 94 (219)
..|+++.. -++=+|.++|.|+||+.+...++-+.. -|+.- |..|+. ..+ -.-| =-++=+|-.||.+
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~gg------v~~L~~---lr~GtllS-GgKDRki~~Wd~~- 316 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGG------VFSLCM---LRDGTLLS-GGKDRKIILWDDN- 316 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCc------eEEEEE---ecCccEee-cCccceEEecccc-
Confidence 46777777 889999999999999998888887777 67433 556652 222 2333 5566688888833
Q ss_pred ceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEE
Q psy10905 95 RSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIV 149 (219)
Q Consensus 95 r~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~ii 149 (219)
.+|+-| || |-....-|-.++=-...+|||||.--|+
T Consensus 317 --------y~k~r~---------~e--lPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 317 --------YRKLRE---------TE--LPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred --------cccccc---------cc--CchhcCCeeEEecCCCcEEEeeccceEE
Confidence 333333 33 2236666777777777799999987765
No 19
>KOG1036|consensus
Probab=92.24 E-value=2.6 Score=39.80 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=87.2
Q ss_pred eeCCCceeeeeeeec-ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEE
Q psy10905 10 ELGASSVLHAITAVP-GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVY 88 (219)
Q Consensus 10 elg~~~~i~s~a~v~-~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vy 88 (219)
++-...+|.++|+.+ .++|.|..||.|..|++.+++.. ...+|-++ ++++.=.. ....-.+-.=+-.|.
T Consensus 50 ~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~--~igth~~~------i~ci~~~~--~~~~vIsgsWD~~ik 119 (323)
T KOG1036|consen 50 KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED--QIGTHDEG------IRCIEYSY--EVGCVISGSWDKTIK 119 (323)
T ss_pred heecCCceeeeeccCCceEEEeccCceEEEEEecCCcce--eeccCCCc------eEEEEeec--cCCeEEEcccCccEE
Confidence 344445577777777 99999999999999999865432 23355444 33333100 111222223366789
Q ss_pred EEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcce-ee-eeecccc
Q psy10905 89 QWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLR-PI-TVFRPYE 166 (219)
Q Consensus 89 qw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLr-Pi-t~frp~e 166 (219)
.||+..++..+.+|-- + .|-+|.+.++.|-|||.=-++++-|--.|. |. .-=++++
T Consensus 120 ~wD~R~~~~~~~~d~~---------------------k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 120 FWDPRNKVVVGTFDQG---------------------K-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred EEeccccccccccccC---------------------c-eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence 9999886655555433 2 788999999999999999999999965552 22 1124455
Q ss_pred cceeEEeeec
Q psy10905 167 ELVTAILPLG 176 (219)
Q Consensus 167 ~~V~~Ii~l~ 176 (219)
=-+|+|..++
T Consensus 178 yqtR~v~~~p 187 (323)
T KOG1036|consen 178 YQTRCVALVP 187 (323)
T ss_pred eEEEEEEEec
Confidence 5566665554
No 20
>KOG3522|consensus
Probab=92.19 E-value=0.45 Score=49.78 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=82.4
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
-..|.|-++|++-||...++...+.- .-|-+. ...|+||+ ..+.+||.++--|..+..++++|-.=++..|+-
T Consensus 636 ed~~was~gG~V~vi~~tt~~~~~~l-eahqee---~~~Vthm~---~~~~gVwvafasG~~~rlfhtetl~hlqd~nia 708 (925)
T KOG3522|consen 636 EDFVWASEGGCVHVIPSTTFIRSWDL-EAHQEE---AHSVTHML---YLDNGVWVAFASGDEERLFHTETLWHLQDSNIA 708 (925)
T ss_pred hceeeeecCCceEEEechhccccchh-HHHHhh---cceEEEEE---eeCCceEEEEcCCCEEEEecccccCCccccccC
Confidence 45566778899999977765555332 223222 45899999 677789999999999999999999888888877
Q ss_pred ccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEe
Q psy10905 105 KLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAE 152 (219)
Q Consensus 105 kl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVae 152 (219)
..+.-- . ...-.-.|+....+-+.|-|||+-|.+|+..
T Consensus 709 T~vt~~---------l-P~~kllsv~~rl~c~gl~~V~~~~~l~v~~~ 746 (925)
T KOG3522|consen 709 TSVTVD---------L-PFGKLLSVPGRLWCQGLLMVLTSLTLLVALP 746 (925)
T ss_pred cceeec---------C-CCcccccCCCcccccceeEEeccceeEEEee
Confidence 633210 0 1224566788888889999999999998875
No 21
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.53 E-value=3.4 Score=37.05 Aligned_cols=104 Identities=10% Similarity=0.119 Sum_probs=72.2
Q ss_pred eeeecceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeee
Q psy10905 20 ITAVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVN 99 (219)
Q Consensus 20 ~a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~ 99 (219)
.++.+..+++|..+|.+.-++.+++.+.+...+.- . . ....+ .+...|+.....| .||.+|.+|++++=
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--~-~----~~~p~---v~~~~v~v~~~~g-~l~ald~~tG~~~W 129 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDE--R-L----SGGVG---ADGGLVFVGTEKG-EVIALDAEDGKELW 129 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCC--C-c----ccceE---EcCCEEEEEcCCC-EEEEEECCCCcEee
Confidence 34555899999999999999988888888766532 1 1 01112 1344576655544 89999999999998
Q ss_pred eeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCc
Q psy10905 100 KLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDS 155 (219)
Q Consensus 100 ~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~t 155 (219)
+.++..- ..++..+.++.+|+++.-|.|...|..+
T Consensus 130 ~~~~~~~---------------------~~~~p~v~~~~v~v~~~~g~l~a~d~~t 164 (377)
T TIGR03300 130 RAKLSSE---------------------VLSPPLVANGLVVVRTNDGRLTALDAAT 164 (377)
T ss_pred eeccCce---------------------eecCCEEECCEEEEECCCCeEEEEEcCC
Confidence 8765420 0123445678999999999999888654
No 22
>KOG4378|consensus
Probab=91.19 E-value=1.7 Score=43.81 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=83.9
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
.-|=.-..+|.+++|+...-.-..+..=-|. .||+++ ++. + ..+.....+--++++|.+|..+|+-..+|--+
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs-AP~~gi---cfs--p-sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHS-APCRGI---CFS--P-SNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhcc-CCcCcc---eec--C-CccceEEEecccceEEEeecccccccceeeec
Confidence 3344445678889996653222222222232 234332 233 3 44568888999999999999999988888777
Q ss_pred ccccCCCCcccccccccccccCceeeeEee--ecceEEEecceeEEEEEe-cCcceeeeeecccccceeEEe
Q psy10905 105 KLVPCSESLQSICIEEPLRQDQCHVTSVCI--LDTCLYIGTTWGCIVVAE-KDSLRPITVFRPYEELVTAIL 173 (219)
Q Consensus 105 kl~PcSEsl~si~iee~l~~~~~qVtaL~~--~~~~LYIGTtwG~iiVae-a~tLrPit~frp~e~~V~~Ii 173 (219)
. |-| +++. ++.+|-+|++.|-||--| +.+=.|+++..-|..-|+.|-
T Consensus 251 ~--Pls--------------------tvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 251 H--PLS--------------------TVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred C--Ccc--------------------eeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 6 522 3444 568999999999999999 666699999999999999875
No 23
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=90.83 E-value=14 Score=34.50 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=76.2
Q ss_pred EEEeeCCCceeeeeeeec---ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeC
Q psy10905 7 VLTELGASSVLHAITAVP---GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYP 83 (219)
Q Consensus 7 ~ltelg~~~~i~s~a~v~---~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~p 83 (219)
++.++.++...|...... +.++....+|.|+++++....+...-.+. ..-..++.+ .++..++..-+-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--------~~~~~i~~s-~DG~~~~v~n~~ 98 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--------GNPRGIAVS-PDGKYVYVANYE 98 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--------SEEEEEEE---TTTEEEEEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--------CCcceEEEc-CCCCEEEEEecC
Confidence 345554443345544443 77999888999999999987655443331 122334322 467789999888
Q ss_pred CcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec-ceEEEecce--eEEEEEecCcceee
Q psy10905 84 GCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD-TCLYIGTTW--GCIVVAEKDSLRPI 159 (219)
Q Consensus 84 g~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~-~~LYIGTtw--G~iiVaea~tLrPi 159 (219)
...|..+|++|.+++.++...+.-. .....+|+|+.... ...||=..+ |-|.++|-....|+
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~~~~--------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGGMPV--------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--EE-T--------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred CCceeEeccccccceeecccccccc--------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 8899999999999999887765322 01345666665433 444665544 77777776665554
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.81 E-value=14 Score=37.20 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=70.6
Q ss_pred eeeeeeec---ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecc
Q psy10905 17 LHAITAVP---GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQ 93 (219)
Q Consensus 17 i~s~a~v~---~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~ 93 (219)
+.+++.-. ..|-+|..+|.|.+|++++..........|... |..+.- .+.. .......+..|..||..
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~------V~~v~f--~~~~-~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT------VSYVRF--VDSS-TLVSSSTDNTLKLWDLS 690 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC------EEEEEE--eCCC-EEEEEECCCEEEEEeCC
Confidence 44554432 678899999999999998654332333345333 444432 1222 33344556789999986
Q ss_pred cceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeee
Q psy10905 94 ARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 94 tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~f 162 (219)
+..-. . ....++++ +.| .....+.++...+.+|..|..-|.|.+-+..+-.|+..+
T Consensus 691 ~~~~~--~-------~~~~l~~~--~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 691 MSISG--I-------NETPLHSF--MGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred CCccc--c-------CCcceEEE--cCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 53200 0 01112222 222 122223334445678888999999999998777776554
No 25
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.25 E-value=9.1 Score=31.40 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=67.4
Q ss_pred ceeeec-ccCCcEEEEEccCCceEeeeeeeccCCcc-ccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeee
Q psy10905 25 GELWCG-ESDGNISIYTMSEHSVTSHDTVNHFHPVI-SNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLD 102 (219)
Q Consensus 25 ~eLW~G-~~~g~Isi~~l~~~~vs~~~~l~h~~~~~-~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD 102 (219)
..||.+ +.+|+|.+|+++.+.....-.. +.+... .......++.. .+...+|....+...|+.||.++.+++..+.
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~s-~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 246 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITF-EIPGVHPEAVQPVGIKLT-KDGKTAFVALGPANRVAVVDAKTYEVLDYLL 246 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeee-cccccccccCCccceEEC-CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 667755 4589999999986543211111 111100 01111122212 2444567776777789999999988765432
Q ss_pred ccccccCCCCcccccccccccccCceeeeEee--ecceEEEec-ceeEEEEEecCcceeeeeec
Q psy10905 103 CSKLVPCSESLQSICIEEPLRQDQCHVTSVCI--LDTCLYIGT-TWGCIVVAEKDSLRPITVFR 163 (219)
Q Consensus 103 ~skl~PcSEsl~si~iee~l~~~~~qVtaL~~--~~~~LYIGT-twG~iiVaea~tLrPit~fr 163 (219)
.. . .+.+|+. .+..||++- .-|-|.|.|..+.+++..+.
T Consensus 247 ~~------~----------------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 247 VG------Q----------------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred eC------C----------------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 11 0 1334444 446788874 47999999999998877663
No 26
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=89.93 E-value=8.8 Score=36.25 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=76.2
Q ss_pred ceeeeccc----------CCcEEEEEccCCceEeeeeeeccCCcc----ccceeEEEeecCCCCceEEEEE-eCCcEEEE
Q psy10905 25 GELWCGES----------DGNISIYTMSEHSVTSHDTVNHFHPVI----SNVDVSFLVSSPSTSAWVWSYV-YPGCSVYQ 89 (219)
Q Consensus 25 ~eLW~G~~----------~g~Isi~~l~~~~vs~~~~l~h~~~~~----~~~~V~~L~~~~~~~~~Vwsyv-~pg~~Vyq 89 (219)
++|+.... ++.|+||++.+..+... +..+++|- +.-..+.|. .++.++|.+- .|...|-.
T Consensus 58 ~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~--i~~p~~p~~~~~~~~~~~~ls---~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 58 SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD--IELPEGPRFLVGTYPWMTSLT---PDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred CEEEEEeccccccccCCCCCEEEEEECccCcEEeE--EccCCCchhhccCccceEEEC---CCCCEEEEecCCCCCEEEE
Confidence 66666554 89999998876555433 33333211 001112222 4666777544 78999999
Q ss_pred Eecccceeeeeeec---cccccCCCC----------cccccccccccccCceeeeEee-----------------ecceE
Q psy10905 90 WDTQARSIVNKLDC---SKLVPCSES----------LQSICIEEPLRQDQCHVTSVCI-----------------LDTCL 139 (219)
Q Consensus 90 w~~~tr~I~~~LD~---skl~PcSEs----------l~si~iee~l~~~~~qVtaL~~-----------------~~~~L 139 (219)
.|.++|+++.++|. ..+.|-+|. +..+.+++ .++.++....+ .+.+|
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~---~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGT---KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecC---CCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 99999999999975 446774432 22222222 12222222222 34677
Q ss_pred EEecceeEEEEEe-----cCcceeeeee
Q psy10905 140 YIGTTWGCIVVAE-----KDSLRPITVF 162 (219)
Q Consensus 140 YIGTtwG~iiVae-----a~tLrPit~f 162 (219)
||--. |-|-++| +..+.|+..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~ 236 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAF 236 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeec
Confidence 77777 8888888 6677776664
No 27
>KOG0646|consensus
Probab=89.79 E-value=11 Score=37.30 Aligned_cols=117 Identities=18% Similarity=0.329 Sum_probs=75.3
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceE-----eeeeeeccCCccccceeEEEeecCC-CCceEEEEEeCCcEEE
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVT-----SHDTVNHFHPVISNVDVSFLVSSPS-TSAWVWSYVYPGCSVY 88 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs-----~~~~l~h~~~~~~~~~V~~L~~~~~-~~~~Vwsyv~pg~~Vy 88 (219)
|.|+-+.+ -.+-.|..||++-||.+.. -|+ ...-++++.+ -.++|+-|..+.. ....|++ ..-+-.+.
T Consensus 126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~-lv~a~~~~~~~p~~~f~~--HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k 201 (476)
T KOG0646|consen 126 ITCLKFSDDGSHIITGSKDGAVLVWLLTD-LVSADNDHSVKPLHIFSD--HTLSITDLQIGSGGTNARLYT-ASEDRTIK 201 (476)
T ss_pred eeEEEEeCCCcEEEecCCCccEEEEEEEe-ecccccCCCccceeeecc--CcceeEEEEecCCCccceEEE-ecCCceEE
Confidence 45555555 8899999999999997752 111 2222333333 1567888865333 2333444 35567889
Q ss_pred EEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEee--ecceEEEecceeEEEEEecCcceee
Q psy10905 89 QWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCI--LDTCLYIGTTWGCIVVAEKDSLRPI 159 (219)
Q Consensus 89 qw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~--~~~~LYIGTtwG~iiVaea~tLrPi 159 (219)
.||...+.++-++ ..|.+ |+ |+++ -+...||||.-|+|-+-.-..+.|.
T Consensus 202 ~wdlS~g~LLlti----~fp~s--i~----------------av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 202 LWDLSLGVLLLTI----TFPSS--IK----------------AVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred EEEeccceeeEEE----ecCCc--ce----------------eEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 9999999776544 23433 33 4444 3477899999999999987777653
No 28
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.23 E-value=7.3 Score=35.58 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=69.4
Q ss_pred cceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeec
Q psy10905 24 PGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDC 103 (219)
Q Consensus 24 ~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~ 103 (219)
+..|.++..+|.+..++++++.+.+...+..+.+ ++ .+...||..- ..-.||-+|.++++++=+.+-
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---------~~---~~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVND---------FA---VDGGRIYLVD-QNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccC---------cE---EECCEEEEEc-CCCeEEEEECCCCcEEEcccc
Confidence 4667777677888888888777776654432211 12 1333455433 345788889988887654321
Q ss_pred cccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeec
Q psy10905 104 SKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFR 163 (219)
Q Consensus 104 skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~fr 163 (219)
. .....++..+.++.||+|+.-|.|.++|+.+=+.+.-++
T Consensus 323 ~--------------------~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 323 L--------------------LHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred c--------------------CCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 1 011234556678999999999999999998877766554
No 29
>KOG0315|consensus
Probab=89.17 E-value=3.3 Score=38.65 Aligned_cols=120 Identities=22% Similarity=0.350 Sum_probs=73.6
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
+=+-+|..||.+.||+|++ ++.+....|..| |..++--+ ......|.-+-| -|..||..+..-.+
T Consensus 96 rWMyTgseDgt~kIWdlR~--~~~qR~~~~~sp------Vn~vvlhp-nQteLis~dqsg-~irvWDl~~~~c~~----- 160 (311)
T KOG0315|consen 96 RWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSP------VNTVVLHP-NQTELISGDQSG-NIRVWDLGENSCTH----- 160 (311)
T ss_pred eEEEecCCCceEEEEeccC--cccchhccCCCC------cceEEecC-CcceEEeecCCC-cEEEEEccCCcccc-----
Confidence 6678999999999999997 888888877644 22222111 111233332222 46678887654333
Q ss_pred cccc-CCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEe------cCcceeeeeecccccceeEEe
Q psy10905 105 KLVP-CSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAE------KDSLRPITVFRPYEELVTAIL 173 (219)
Q Consensus 105 kl~P-cSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVae------a~tLrPit~frp~e~~V~~Ii 173 (219)
.|+| --++++|+++.- .+..|--++.+|-..|=+ ++.|.|++=|+-|++.+....
T Consensus 161 ~liPe~~~~i~sl~v~~--------------dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 161 ELIPEDDTSIQSLTVMP--------------DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred ccCCCCCcceeeEEEcC--------------CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 2555 224555555431 234444455666555544 788999999999998775544
No 30
>KOG1587|consensus
Probab=88.75 E-value=9.6 Score=38.24 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=88.3
Q ss_pred CCceeeeeeeec---ceeeecccCCcEEEEEccCCce---E--eeeeeeccCCccccceeEEEeecCCCCceEEEEEeCC
Q psy10905 13 ASSVLHAITAVP---GELWCGESDGNISIYTMSEHSV---T--SHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPG 84 (219)
Q Consensus 13 ~~~~i~s~a~v~---~eLW~G~~~g~Isi~~l~~~~v---s--~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg 84 (219)
.+.++.|+++-+ .-|=+|.-+|+|-+|+++.+.- + +....+|.++ | ..+.-+.. +.. ..+.|.-.-|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~-v--~~vvW~~~-~~~-~~f~s~ssDG 315 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP-V--TAVVWLQN-EHN-TEFFSLSSDG 315 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC-e--EEEEEecc-CCC-CceEEEecCC
Confidence 344456666665 6677888899999999996633 3 5556666666 1 11222211 111 2244444433
Q ss_pred cEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec---ceEEEecceeEEEEEecCcceeee-
Q psy10905 85 CSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD---TCLYIGTTWGCIVVAEKDSLRPIT- 160 (219)
Q Consensus 85 ~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~---~~LYIGTtwG~iiVaea~tLrPit- 160 (219)
.|--| .+|.+....|..- .|+.+.+.=+ +..-+++|+|.... +..+|||=-|+|..+...-++|.-
T Consensus 316 -~i~~W--~~~~l~~P~e~~~----~~~~~~~~~~---~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 316 -SICSW--DTDMLSLPVEGLL----LESKKHKGQQ---SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred -cEeee--eccccccchhhcc----cccccccccc---cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 44456 2333332222221 2222222112 24667889988855 889999999999999877776544
Q ss_pred -------eecccccceeEEeeec
Q psy10905 161 -------VFRPYEELVTAILPLG 176 (219)
Q Consensus 161 -------~frp~e~~V~~Ii~l~ 176 (219)
.+.+|-+.|++|-.-+
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred ccccccccccccCcceEeeecCC
Confidence 7888888888886444
No 31
>KOG4499|consensus
Probab=88.31 E-value=3 Score=38.78 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=39.1
Q ss_pred CceEEEEEeCCcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec---ceEEEec
Q psy10905 74 SAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD---TCLYIGT 143 (219)
Q Consensus 74 ~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~---~~LYIGT 143 (219)
+-..|.+++.|.+|+++|..|+||+.++-+ | -.|||+-|.-+ +.||+-|
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eikl----P-----------------t~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKL----P-----------------TPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEc----C-----------------CCceEEEEecCCCccEEEEEe
Confidence 446999999999999999999999987643 3 34788877766 7788754
No 32
>KOG1240|consensus
Probab=87.85 E-value=5.8 Score=43.55 Aligned_cols=116 Identities=21% Similarity=0.263 Sum_probs=77.0
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceEe--eeeeeccCCccccceeEEE-eecCCCCceEEEEEeCCcEEEEEe
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVTS--HDTVNHFHPVISNVDVSFL-VSSPSTSAWVWSYVYPGCSVYQWD 91 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~--~~~l~h~~~~~~~~~V~~L-~~~~~~~~~Vwsyv~pg~~Vyqw~ 91 (219)
..+.+.++ .++=+|..||.|-++.++..+++. ..+.--++++-++. |..| +..+.+.+++-.|.-.=+.+--||
T Consensus 1101 ~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~-vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1101 VEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGV-VVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred eEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCc-eEEeecccccccceeEEEEEeccceEEec
Confidence 34445555 788889999999999888644442 22222233323233 5555 322223446888888888888999
Q ss_pred cccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec--ceEEEecceeEEEEEe
Q psy10905 92 TQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD--TCLYIGTTWGCIVVAE 152 (219)
Q Consensus 92 ~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~--~~LYIGTtwG~iiVae 152 (219)
+.++...-++-- ....+.||++++.. +-|-|||+.|-++.=|
T Consensus 1180 ~r~~~~~w~lk~-------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKN-------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWD 1223 (1431)
T ss_pred chhhhhHHhhhc-------------------CccccceeEEEecCCceEEEEecCCceEEEEE
Confidence 988765554432 34677888888855 6788999999988877
No 33
>KOG0296|consensus
Probab=87.53 E-value=1.1 Score=43.19 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=38.5
Q ss_pred ecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeee
Q psy10905 29 CGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNK 100 (219)
Q Consensus 29 ~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~ 100 (219)
||.=+|+|.||++.. .+......|.++ |..|.=- ....++-+. -.++|||||+.|+|.+..
T Consensus 303 ~G~vdG~i~iyD~a~--~~~R~~c~he~~------V~~l~w~--~t~~l~t~c-~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 303 CGSVDGTIAIYDLAA--STLRHICEHEDG------VTKLKWL--NTDYLLTAC-ANGKVRQWDARTGQLKFT 363 (399)
T ss_pred cccccceEEEEeccc--chhheeccCCCc------eEEEEEc--Ccchheeec-cCceEEeeeccccceEEE
Confidence 788899999998775 344556667666 3333210 111122222 346899999999998764
No 34
>KOG0266|consensus
Probab=87.24 E-value=27 Score=33.12 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=83.8
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccc
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~t 94 (219)
+...+.=+ ..|-+|-.|+.|.||++......-...-.|..+ |+.++-.+.+ +-+-|. .-+-.|+-||+.+
T Consensus 206 v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~------v~~~~f~p~g-~~i~Sg-s~D~tvriWd~~~ 277 (456)
T KOG0266|consen 206 VSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY------VTSVAFSPDG-NLLVSG-SDDGTVRIWDVRT 277 (456)
T ss_pred eeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc------eEEEEecCCC-CEEEEe-cCCCcEEEEeccC
Confidence 45555554 789999999999999996554444444588776 3444333322 223332 3345689999999
Q ss_pred ceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec--ceEEEecceeEEEEEecCcce--eeeeecccccc--
Q psy10905 95 RSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD--TCLYIGTTWGCIVVAEKDSLR--PITVFRPYEEL-- 168 (219)
Q Consensus 95 r~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~--~~LYIGTtwG~iiVaea~tLr--Pit~frp~e~~-- 168 (219)
++....|. +..-+||+++... ++|..|..-|.|.|=|..+.+ ++..+...+..
T Consensus 278 ~~~~~~l~---------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 336 (456)
T KOG0266|consen 278 GECVRKLK---------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAP 336 (456)
T ss_pred CeEEEeee---------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCc
Confidence 66654432 3344677777644 788888778999998888887 66777777766
Q ss_pred eeEEe
Q psy10905 169 VTAIL 173 (219)
Q Consensus 169 V~~Ii 173 (219)
|+++.
T Consensus 337 ~~~~~ 341 (456)
T KOG0266|consen 337 VTSVQ 341 (456)
T ss_pred eeEEE
Confidence 44443
No 35
>KOG3881|consensus
Probab=87.24 E-value=21 Score=34.80 Aligned_cols=141 Identities=14% Similarity=0.220 Sum_probs=99.4
Q ss_pred ceeee-cccC--CcEEEEEccCCceEeeeeeeccCCccccceeEEEee----cCCCCceEEEEEeCCcEEEEEeccc-ce
Q psy10905 25 GELWC-GESD--GNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVS----SPSTSAWVWSYVYPGCSVYQWDTQA-RS 96 (219)
Q Consensus 25 ~eLW~-G~~~--g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~----~~~~~~~Vwsyv~pg~~Vyqw~~~t-r~ 96 (219)
.++=+ |+.+ +-..||++... ...+.+=|-++|-+ ++.|--+-+ -+.+....+...-.-..|..+|+.. |+
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L-~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRL-GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR 238 (412)
T ss_pred CceEecCchhcccceeeeecccc-eeeeeccCCCCccc-cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence 45555 8888 88999988876 66777778887733 223322221 1112244666666667788888875 56
Q ss_pred eeeeeeccccccCCCCcccccccccccccCceeeeEee--ecceEEEecceeEEEEEecCcceeeee-ecccccceeEEe
Q psy10905 97 IVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCI--LDTCLYIGTTWGCIVVAEKDSLRPITV-FRPYEELVTAIL 173 (219)
Q Consensus 97 I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~--~~~~LYIGTtwG~iiVaea~tLrPit~-frp~e~~V~~Ii 173 (219)
...++|.+ || -+|++++ .++++|+|++.|-|-..|..+.+-+.. |-.+.|-+++|.
T Consensus 239 PV~~fd~~---------------E~------~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih 297 (412)
T KOG3881|consen 239 PVAQFDFL---------------EN------PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH 297 (412)
T ss_pred ceeEeccc---------------cC------cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE
Confidence 66666665 22 3455665 559999999999999999999999999 899999999999
Q ss_pred eecC--eEEEeccccccceeecc
Q psy10905 174 PLGG--DIVTIGRGYRSLVSRYT 194 (219)
Q Consensus 174 ~l~g--~l~TiG~GyR~L~~r~~ 194 (219)
..++ -|++.| ++||.
T Consensus 298 ~hp~~~~las~G------LDRyv 314 (412)
T KOG3881|consen 298 CHPTHPVLASCG------LDRYV 314 (412)
T ss_pred EcCCCceEEeec------cceeE
Confidence 9886 356655 55665
No 36
>KOG0296|consensus
Probab=86.48 E-value=15 Score=35.64 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=99.0
Q ss_pred ceeeecccCCcEEEEEccCCceE-eeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeee-
Q psy10905 25 GELWCGESDGNISIYTMSEHSVT-SHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLD- 102 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs-~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD- 102 (219)
+.+=+|..+|.|-+|.++....- --..-.|.+.+| +.. ....+.-..-..++.+|--...|+|+++.++
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~-------~~~--~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC-------ISL--NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred ceEEEEecCceEEEEecCCCceeEEecccccCcCCc-------ccc--ccccceeEeccCCccEEEEccccceEEEecCC
Confidence 88999999999999999975322 111112444433 221 1111233445678889999999999999998
Q ss_pred -ccccccCC----CCccccc--ccccccc-------------------cCc----eeeeEeeec-ceEEEecceeEEEEE
Q psy10905 103 -CSKLVPCS----ESLQSIC--IEEPLRQ-------------------DQC----HVTSVCILD-TCLYIGTTWGCIVVA 151 (219)
Q Consensus 103 -~skl~PcS----Esl~si~--iee~l~~-------------------~~~----qVtaL~~~~-~~LYIGTtwG~iiVa 151 (219)
...+.|.+ ||+++|. -..+|.| .+| -|+.|--++ .+||-++.-|-|=.-
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQW 353 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEee
Confidence 44455533 3344333 1111111 011 166666666 889999999999999
Q ss_pred ecCcceeeeeecccccceeEEeeecC--eEEEecc
Q psy10905 152 EKDSLRPITVFRPYEELVTAILPLGG--DIVTIGR 184 (219)
Q Consensus 152 ea~tLrPit~frp~e~~V~~Ii~l~g--~l~TiG~ 184 (219)
|+-|=|.+..++.|-..|-.|+-... .|+|.+.
T Consensus 354 DaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 354 DARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred eccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 99999999999999999988876653 3666654
No 37
>KOG2321|consensus
Probab=84.25 E-value=8 Score=39.62 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=81.7
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
|+|.+|.+-..++=+.|.-+.+ |+-++-..+.+++..+. ...+...+=-...+|--||..+|++..+||+-
T Consensus 146 cDly~~gsg~evYRlNLEqGrf-----L~P~~~~~~~lN~v~in----~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRF-----LNPFETDSGELNVVSIN----EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccEEEeecCcceEEEEcccccc-----ccccccccccceeeeec----CccceEEecccCceEEEecchhhhhheeeecc
Confidence 9999998855555553333322 22222222223333222 11111111112347899999999999999997
Q ss_pred ccccCCCCcccccccccccccCceeeeEeeecc--eEEEecceeEEEEEecCcceeeeee-cccccceeEEeee
Q psy10905 105 KLVPCSESLQSICIEEPLRQDQCHVTSVCILDT--CLYIGTTWGCIVVAEKDSLRPITVF-RPYEELVTAILPL 175 (219)
Q Consensus 105 kl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~--~LYIGTtwG~iiVaea~tLrPit~f-rp~e~~V~~Ii~l 175 (219)
--+|.- +. ......|||+...++ .+=|||+.|.+++-|--+=+|+-+= +.||-+++-|.=.
T Consensus 217 ~~v~s~-------pg---~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 217 SSVNSH-------PG---GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred cccCCC-------cc---ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 654421 11 236678999999873 6779999999999998888887664 3566666655543
No 38
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=83.07 E-value=17 Score=34.35 Aligned_cols=112 Identities=9% Similarity=0.119 Sum_probs=73.8
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCc------cc-cceeEEEeecCCCCceEEE---------EEeCCcEEE
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPV------IS-NVDVSFLVSSPSTSAWVWS---------YVYPGCSVY 88 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~------~~-~~~V~~L~~~~~~~~~Vws---------yv~pg~~Vy 88 (219)
.++|.-.. |.|++.++.++.............. -| +.+..-+- .+...+|. ...||..|-
T Consensus 207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~---~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH---RARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc---CCCCEEEEEecCCccccccCCCCEEE
Confidence 89999966 9999999887766655555443221 11 22222222 24444555 467779999
Q ss_pred EEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec--c-eEEEec-ceeEEEEEecCcceeeeee
Q psy10905 89 QWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD--T-CLYIGT-TWGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 89 qw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~--~-~LYIGT-twG~iiVaea~tLrPit~f 162 (219)
.+|++|++++.++...+ + +-.|++.. . .||+=. .-|-|-|.|+.+++.+.-.
T Consensus 283 ViD~~t~kvi~~i~vG~--~--------------------~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 283 VVDAKTGKRLRKIELGH--E--------------------IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECCCCeEEEEEeCCC--c--------------------eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999999999998775 1 11444443 4 556544 4577999999999886543
No 39
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=82.69 E-value=25 Score=28.79 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=61.1
Q ss_pred cccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccccC
Q psy10905 30 GESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPC 109 (219)
Q Consensus 30 G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~Pc 109 (219)
+..+|.|.+|+++++..... +.+.+. +..++-.+ +...++........|+.||..+++++.++...
T Consensus 7 ~~~d~~v~~~d~~t~~~~~~--~~~~~~------~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----- 72 (300)
T TIGR03866 7 NEKDNTISVIDTATLEVTRT--FPVGQR------PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSG----- 72 (300)
T ss_pred ecCCCEEEEEECCCCceEEE--EECCCC------CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCC-----
Confidence 45689999999876544322 222111 12233222 34456666666778999999998877655321
Q ss_pred CCCcccccccccccccCceeeeEee--ecceEEEecc-eeEEEEEecCcceeeeeec
Q psy10905 110 SESLQSICIEEPLRQDQCHVTSVCI--LDTCLYIGTT-WGCIVVAEKDSLRPITVFR 163 (219)
Q Consensus 110 SEsl~si~iee~l~~~~~qVtaL~~--~~~~LYIGTt-wG~iiVaea~tLrPit~fr 163 (219)
+. +..+++ .++.||+... -|.|.+.|..+-+++..+.
T Consensus 73 -~~----------------~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 73 -PD----------------PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP 112 (300)
T ss_pred -CC----------------ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence 11 112223 3456787654 4788888988877776664
No 40
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=82.54 E-value=1.7 Score=27.66 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=20.0
Q ss_pred eeEeeecceEEEecceeEEEEEecCc
Q psy10905 130 TSVCILDTCLYIGTTWGCIVVAEKDS 155 (219)
Q Consensus 130 taL~~~~~~LYIGTtwG~iiVaea~t 155 (219)
+++++.++.||||+.-|.|..+|+.|
T Consensus 15 ~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred cCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 45688899999999999999999865
No 41
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.39 E-value=17 Score=33.13 Aligned_cols=115 Identities=9% Similarity=0.096 Sum_probs=74.0
Q ss_pred eeecceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecC-CCCceEEEEEeCCcEEEEEecccceeee
Q psy10905 21 TAVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSP-STSAWVWSYVYPGCSVYQWDTQARSIVN 99 (219)
Q Consensus 21 a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~-~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~ 99 (219)
++.+..|.++..+|.+.-++.+++.+-+...+...........-..+.+++ .+...|+.....| .+|-+|.+|++++=
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g-~l~ald~~tG~~~W 144 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKG-QVYALNAEDGEVAW 144 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCC-EEEEEECCCCCCcc
Confidence 445589999999999999999988888887765421111000000010000 1344576554444 69999999999988
Q ss_pred eeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcce
Q psy10905 100 KLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLR 157 (219)
Q Consensus 100 ~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLr 157 (219)
+.+... + + .++-.+.++.+|+++.-|.|.-+|+.+=+
T Consensus 145 ~~~~~~--~---------~----------~ssP~v~~~~v~v~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 145 QTKVAG--E---------A----------LSRPVVSDGLVLVHTSNGMLQALNESDGA 181 (394)
T ss_pred cccCCC--c---------e----------ecCCEEECCEEEEECCCCEEEEEEccCCC
Confidence 877542 1 0 12334557899999999999999976543
No 42
>KOG0646|consensus
Probab=82.18 E-value=5.1 Score=39.61 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=60.0
Q ss_pred EEEeeCCCceeeeeeeec--ceeeecccCCcEEEEEccC---------------CceEeeeeeeccCCccccceeEEEee
Q psy10905 7 VLTELGASSVLHAITAVP--GELWCGESDGNISIYTMSE---------------HSVTSHDTVNHFHPVISNVDVSFLVS 69 (219)
Q Consensus 7 ~ltelg~~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~---------------~~vs~~~~l~h~~~~~~~~~V~~L~~ 69 (219)
.|..+-.|..|.++|+=+ +.+.+|.++|.|.+..+-. ++..+...+-|-+. -+|++|+-
T Consensus 210 LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~----~~ITcLai 285 (476)
T KOG0646|consen 210 LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE----SAITCLAI 285 (476)
T ss_pred eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC----cceeEEEE
Confidence 556667788777777655 9999999999999986642 22334444444332 25788853
Q ss_pred cCCCCceEEEEEeCCcEEEEEecccceeeeeee
Q psy10905 70 SPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLD 102 (219)
Q Consensus 70 ~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD 102 (219)
+.+.-+...=..+=+|-.||+.+||++-+|-
T Consensus 286 --s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 286 --STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred --ecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 1222255555566689999999999876654
No 43
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=81.31 E-value=6.3 Score=37.48 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=49.3
Q ss_pred EEEEEeCC-cEEEEEeccccee---------------------eeeeeccccccCC--CCcccccccccccccCceeeeE
Q psy10905 77 VWSYVYPG-CSVYQWDTQARSI---------------------VNKLDCSKLVPCS--ESLQSICIEEPLRQDQCHVTSV 132 (219)
Q Consensus 77 Vwsyv~pg-~~Vyqw~~~tr~I---------------------~~~LD~skl~PcS--Esl~si~iee~l~~~~~qVtaL 132 (219)
.=..+.-| .+||+|..+...- ..=.|+++..|-+ |.+++..+=+ +.+.+||||
T Consensus 16 lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~---~~~g~vtal 92 (395)
T PF08596_consen 16 LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD---AKQGPVTAL 92 (395)
T ss_dssp EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE------S-SEEEE
T ss_pred EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee---ccCCcEeEE
Confidence 33444444 4678998874432 1223788877755 7788887443 359999999
Q ss_pred eeec-ceEEEecceeEEEEEecCcceeeeeec
Q psy10905 133 CILD-TCLYIGTTWGCIVVAEKDSLRPITVFR 163 (219)
Q Consensus 133 ~~~~-~~LYIGTtwG~iiVaea~tLrPit~fr 163 (219)
+.++ +.+=||-.-|.|+|+|- =-|--+|+
T Consensus 93 ~~S~iGFvaigy~~G~l~viD~--RGPavI~~ 122 (395)
T PF08596_consen 93 KNSDIGFVAIGYESGSLVVIDL--RGPAVIYN 122 (395)
T ss_dssp EE-BTSEEEEEETTSEEEEEET--TTTEEEEE
T ss_pred ecCCCcEEEEEecCCcEEEEEC--CCCeEEee
Confidence 9988 99999999999999994 22444444
No 44
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=81.00 E-value=45 Score=31.16 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=64.8
Q ss_pred cCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccccCCC
Q psy10905 32 SDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPCSE 111 (219)
Q Consensus 32 ~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~PcSE 111 (219)
.+|+++|.+.+...+...-.. ..+ .-..++. +.++..+|+.=+ +..|..+|..++|+..++..-+
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~--~~~-----~h~~~~~-s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G~------ 78 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPT--GGA-----PHAGLKF-SPDGRYLYVANR-DGTVSVIDLATGKVVATIKVGG------ 78 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE---STT-----EEEEEE--TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-SS------
T ss_pred CCCEEEEEECCCCeEEEEEcC--CCC-----ceeEEEe-cCCCCEEEEEcC-CCeEEEEECCcccEEEEEecCC------
Confidence 357888887775544432221 111 1111221 235556887755 5589999999999999986543
Q ss_pred CcccccccccccccCceeeeEeeecceEEEec-ceeEEEEEecCcceeeeeec----cc---ccceeEEeeec
Q psy10905 112 SLQSICIEEPLRQDQCHVTSVCILDTCLYIGT-TWGCIVVAEKDSLRPITVFR----PY---EELVTAILPLG 176 (219)
Q Consensus 112 sl~si~iee~l~~~~~qVtaL~~~~~~LYIGT-twG~iiVaea~tLrPit~fr----p~---e~~V~~Ii~l~ 176 (219)
....+ |++-.+.++|++- .-|-+.|.|+.||.|+.... |. +..|.+|+..+
T Consensus 79 ~~~~i--------------~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 79 NPRGI--------------AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp EEEEE--------------EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred CcceE--------------EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC
Confidence 11111 3334567899886 46899999999999987652 22 44566776554
No 45
>KOG0274|consensus
Probab=80.31 E-value=40 Score=33.53 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=99.4
Q ss_pred EeeCCCceeeeeeeecceeeecccCCcEEEEEccCCceEeeeeee-ccCCccccceeEEEeecCCCCceEEEEEeCCcEE
Q psy10905 9 TELGASSVLHAITAVPGELWCGESDGNISIYTMSEHSVTSHDTVN-HFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSV 87 (219)
Q Consensus 9 telg~~~~i~s~a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~-h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~V 87 (219)
+..|-.+.++++...+.-+=-|-.|..|.||++.+... ...+. |-+ +|..+. .+..-+.+--+-| .|
T Consensus 286 ~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~--l~l~~~h~~------~V~~v~---~~~~~lvsgs~d~-~v 353 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC--LNLLRGHTG------PVNCVQ---LDEPLLVSGSYDG-TV 353 (537)
T ss_pred EecCCCceEEEEEccCceEeeccCCceEEEEeccCcce--EEEeccccc------cEEEEE---ecCCEEEEEecCc-eE
Confidence 33455555777777776666688899999998874422 22222 544 477887 4677789999999 99
Q ss_pred EEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec-ceEEEecceeEEEEEecCcc-eeeeeeccc
Q psy10905 88 YQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD-TCLYIGTTWGCIVVAEKDSL-RPITVFRPY 165 (219)
Q Consensus 88 yqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~-~~LYIGTtwG~iiVaea~tL-rPit~frp~ 165 (219)
..||+.+.+-+..| +.--.+|.+|.+.. +.+|=|-.-+-|=+=|-.++ +++-++.-|
T Consensus 354 ~VW~~~~~~cl~sl---------------------~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h 412 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSL---------------------SGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGH 412 (537)
T ss_pred EEEEhhhceeeeee---------------------cCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence 99999965544432 23456899998888 99999999999999999999 999999999
Q ss_pred ccceeEEee
Q psy10905 166 EELVTAILP 174 (219)
Q Consensus 166 e~~V~~Ii~ 174 (219)
.+=|..+..
T Consensus 413 ~~~v~~l~~ 421 (537)
T KOG0274|consen 413 TSLVSSLLL 421 (537)
T ss_pred ccccccccc
Confidence 998865553
No 46
>KOG4547|consensus
Probab=80.14 E-value=31 Score=34.86 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=85.5
Q ss_pred ecccCCcEEEEEccCCceE-eeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccc
Q psy10905 29 CGESDGNISIYTMSEHSVT-SHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLV 107 (219)
Q Consensus 29 ~G~~~g~Isi~~l~~~~vs-~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~ 107 (219)
-|--+|.|-+|+..++.++ ....=+|+++ |..... .+..+-.=.+--.++|-+|+..+.++.++-.+.+..
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~------v~~~~~--~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGN------VNEILD--AQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCc------ceeeec--ccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 4566789999999999888 4455788877 222221 122233334567789999999999999999888854
Q ss_pred cCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeecccccceeEEee
Q psy10905 108 PCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILP 174 (219)
Q Consensus 108 PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~ 174 (219)
| ++++...+-=-.+|.-+-|-|.+..+..-+.-|-.|-+.|+++--
T Consensus 147 ~---------------------~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 147 V---------------------SSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred c---------------------ceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 4 355666652233556788999999999999999999999998753
No 47
>KOG0263|consensus
Probab=79.30 E-value=12 Score=38.75 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=57.3
Q ss_pred CcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec--ceEEEecceeEEEEEecCcceeeee
Q psy10905 84 GCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD--TCLYIGTTWGCIVVAEKDSLRPITV 161 (219)
Q Consensus 84 g~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~--~~LYIGTtwG~iiVaea~tLrPit~ 161 (219)
++.|.+||+.++...-.+ ..-+..|+||+.+- -+|=-|-.-|.|.+=|-.+=+++..
T Consensus 556 D~tVRlWDv~~G~~VRiF---------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 556 DRTVRLWDVSTGNSVRIF---------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred CceEEEEEcCCCcEEEEe---------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh
Confidence 468999999999875444 24567788888754 5566667889999999999999999
Q ss_pred ecccccceeEEe-eecC
Q psy10905 162 FRPYEELVTAIL-PLGG 177 (219)
Q Consensus 162 frp~e~~V~~Ii-~l~g 177 (219)
|+.|.+-|.++- +.+|
T Consensus 615 l~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDG 631 (707)
T ss_pred hhcccCceeEEEEecCC
Confidence 999988888774 4454
No 48
>KOG0299|consensus
Probab=78.26 E-value=10 Score=37.62 Aligned_cols=106 Identities=17% Similarity=0.268 Sum_probs=70.0
Q ss_pred cceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccccCCCCccccc--ccccccccCceeeeEeeecce
Q psy10905 61 NVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSIC--IEEPLRQDQCHVTSVCILDTC 138 (219)
Q Consensus 61 ~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~--iee~l~~~~~qVtaL~~~~~~ 138 (219)
+.++..|+-++ +...++++= +.+.|-.|++.|++-. +.+.|-.|-+++=- .+.|=..---++.+||++++.
T Consensus 142 ~~s~~~vals~-d~~~~fsas-k~g~i~kw~v~tgk~~-----~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 142 QLSVTSVALSP-DDKRVFSAS-KDGTILKWDVLTGKKD-----RYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred cCcceEEEeec-cccceeecC-CCcceeeeehhcCccc-----ccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 34566666433 344577764 4558999999998732 22333333333222 222111345678999999999
Q ss_pred EEEecce-eE-EEEEecCcceeeeeecccccceeEEe
Q psy10905 139 LYIGTTW-GC-IVVAEKDSLRPITVFRPYEELVTAIL 173 (219)
Q Consensus 139 LYIGTtw-G~-iiVaea~tLrPit~frp~e~~V~~Ii 173 (219)
=|+-|.- |+ |+|-++.||.|+-+|-.|.+.|-...
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLA 251 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeee
Confidence 8988763 44 45999999999999999999887665
No 49
>KOG2055|consensus
Probab=78.10 E-value=13 Score=37.14 Aligned_cols=117 Identities=24% Similarity=0.318 Sum_probs=76.7
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
+=+=.| .+|.|.+++.+..-+-...-+ ++.|+-++-+ +++..+|+.-.-| .||.||..++.+++|.=-.
T Consensus 317 fia~~G-~~G~I~lLhakT~eli~s~Ki--------eG~v~~~~fs-Sdsk~l~~~~~~G-eV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 317 FIAIAG-NNGHIHLLHAKTKELITSFKI--------EGVVSDFTFS-SDSKELLASGGTG-EVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred eEEEcc-cCceEEeehhhhhhhhheeee--------ccEEeeEEEe-cCCcEEEEEcCCc-eEEEEecCCcceEEEEeec
Confidence 344556 458888887775433322222 2344444322 4566788888888 9999999999999887322
Q ss_pred ccccCCCCcccccccccccccCceeeeEe--eecceEEEecceeEEEEEecCc------ceeeeeecccccceeEEeee
Q psy10905 105 KLVPCSESLQSICIEEPLRQDQCHVTSVC--ILDTCLYIGTTWGCIVVAEKDS------LRPITVFRPYEELVTAILPL 175 (219)
Q Consensus 105 kl~PcSEsl~si~iee~l~~~~~qVtaL~--~~~~~LYIGTtwG~iiVaea~t------LrPit~frp~e~~V~~Ii~l 175 (219)
+.-+=|++| +.+++|=+|+-.|.+=|-+-.+ =+|+..+- .-+++|-.+
T Consensus 386 --------------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl 441 (514)
T KOG2055|consen 386 --------------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSL 441 (514)
T ss_pred --------------------CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeee
Confidence 333445555 6678999999999999999332 27777653 445566555
No 50
>KOG2110|consensus
Probab=77.63 E-value=39 Score=32.89 Aligned_cols=69 Identities=14% Similarity=0.325 Sum_probs=49.1
Q ss_pred EEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEE----ecceeEEEEEecCcceeeeee
Q psy10905 87 VYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYI----GTTWGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 87 Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYI----GTtwG~iiVaea~tLrPit~f 162 (219)
+|-+|-.+=++++.+|-.. +-.-.+-||+...+--|+ -|+.|-|++.|+.+|+|.+.+
T Consensus 108 IyIydI~~MklLhTI~t~~------------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTP------------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred EEEEecccceeehhhhccC------------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 6666666666665555432 122235566666653443 378999999999999999999
Q ss_pred cccccceeEEe
Q psy10905 163 RPYEELVTAIL 173 (219)
Q Consensus 163 rp~e~~V~~Ii 173 (219)
+.|++.|-++-
T Consensus 170 ~aH~~~lAala 180 (391)
T KOG2110|consen 170 NAHKGPLAALA 180 (391)
T ss_pred EecCCceeEEE
Confidence 99999998875
No 51
>KOG0306|consensus
Probab=74.78 E-value=78 Score=33.64 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=86.2
Q ss_pred eeCCCceeeeeeeec--ceeeecccCCcEEEEEccCCceEeee-----eee--ccCCccccceeEEEeecCCCC------
Q psy10905 10 ELGASSVLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHD-----TVN--HFHPVISNVDVSFLVSSPSTS------ 74 (219)
Q Consensus 10 elg~~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~-----~l~--h~~~~~~~~~V~~L~~~~~~~------ 74 (219)
+++.-.+++|++.-+ ..|=.|+.||.|.||++.++...... +++ .++- .=++|+|++++.
T Consensus 61 ~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~-----~G~rlaSGskDt~IIvwD 135 (888)
T KOG0306|consen 61 LLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDK-----IGTRLASGSKDTDIIVWD 135 (888)
T ss_pred hhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcc-----cCceEeecCCCccEEEEE
Confidence 334444567777766 67789999999999988754332221 122 1111 123445544441
Q ss_pred -------------------------ceEEEEEeCCcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCcee
Q psy10905 75 -------------------------AWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHV 129 (219)
Q Consensus 75 -------------------------~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qV 129 (219)
+.+-..+..++.+.-||-+|+...- -| ...+.-|
T Consensus 136 lV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~--------------------Th-vd~r~Ei 194 (888)
T KOG0306|consen 136 LVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFE--------------------TH-VDHRGEI 194 (888)
T ss_pred eccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeee--------------------EE-ecccceE
Confidence 2355666777777777777765421 12 3567888
Q ss_pred eeEeeecceEEEecceeEEEEEec------------------------Ccceeeeeecccccc
Q psy10905 130 TSVCILDTCLYIGTTWGCIVVAEK------------------------DSLRPITVFRPYEEL 168 (219)
Q Consensus 130 taL~~~~~~LYIGTtwG~iiVaea------------------------~tLrPit~frp~e~~ 168 (219)
=+|++.++.|-.|++-+-+-|-+- +.=|++..-+||.+.
T Consensus 195 w~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 195 WALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred EEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 899999999999999998888773 222688888888887
No 52
>KOG2048|consensus
Probab=74.70 E-value=80 Score=32.88 Aligned_cols=134 Identities=20% Similarity=0.257 Sum_probs=85.4
Q ss_pred Cceeeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEe
Q psy10905 14 SSVLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWD 91 (219)
Q Consensus 14 ~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~ 91 (219)
|++|.|||... .+|=.|.++|.|-||.++++=+ ++-+=|.+ ++..+..|+=+ .+.-.+|. --.-.|--||
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~--~~~vi~g~---~drsIE~L~W~--e~~RLFS~-g~sg~i~EwD 96 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF--LEPVIHGP---EDRSIESLAWA--EGGRLFSS-GLSGSITEWD 96 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCce--eeEEEecC---CCCceeeEEEc--cCCeEEee-cCCceEEEEe
Confidence 78899999999 8999999999999998886422 22222221 13445555521 12224443 3345678899
Q ss_pred cccceeeeeeecccc-------cc--------CCC--------CcccccccccccccCceeeeEeeec--ceEEEeccee
Q psy10905 92 TQARSIVNKLDCSKL-------VP--------CSE--------SLQSICIEEPLRQDQCHVTSVCILD--TCLYIGTTWG 146 (219)
Q Consensus 92 ~~tr~I~~~LD~skl-------~P--------cSE--------sl~si~iee~l~~~~~qVtaL~~~~--~~LYIGTtwG 146 (219)
..+.+.+-++|+.-- -| |-+ ++.-|.-+.-|+..+.+|=+|.-.. ..+..|+.=|
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG 176 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence 999999999998642 12 111 1111222333445567777777765 4589999999
Q ss_pred EEEEEecCc
Q psy10905 147 CIVVAEKDS 155 (219)
Q Consensus 147 ~iiVaea~t 155 (219)
.|.+=|+.+
T Consensus 177 ~Iriwd~~~ 185 (691)
T KOG2048|consen 177 VIRIWDVKS 185 (691)
T ss_pred eEEEEEcCC
Confidence 999888554
No 53
>KOG0282|consensus
Probab=73.64 E-value=20 Score=35.76 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=60.9
Q ss_pred ecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecccccc
Q psy10905 29 CGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVP 108 (219)
Q Consensus 29 ~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~P 108 (219)
+|.-++.|.||.+.++.=.-....-|-.+ |.-+.= +...-=+....=+..+..||++|+|.+.|+-..++.-
T Consensus 232 S~gmD~~vklW~vy~~~~~lrtf~gH~k~------Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~ 303 (503)
T KOG0282|consen 232 SGGMDGLVKLWNVYDDRRCLRTFKGHRKP------VRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT 303 (503)
T ss_pred ecCCCceEEEEEEecCcceehhhhcchhh------hhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecCCCce
Confidence 34456777777665544334444455444 111110 1111134444557889999999999999999888766
Q ss_pred CCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEe
Q psy10905 109 CSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAE 152 (219)
Q Consensus 109 cSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVae 152 (219)
|=+. .+.. .+...+|++-|-|+--|
T Consensus 304 cvkf----------~pd~---------~n~fl~G~sd~ki~~wD 328 (503)
T KOG0282|consen 304 CVKF----------HPDN---------QNIFLVGGSDKKIRQWD 328 (503)
T ss_pred eeec----------CCCC---------CcEEEEecCCCcEEEEe
Confidence 6533 1222 37889999999999888
No 54
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=72.49 E-value=23 Score=32.60 Aligned_cols=83 Identities=14% Similarity=0.200 Sum_probs=49.6
Q ss_pred eeeecceeeecccCCcEEEEEccCCceEeeeeeeccCC--ccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccccee
Q psy10905 20 ITAVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHP--VISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSI 97 (219)
Q Consensus 20 ~a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~--~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I 97 (219)
+|.-+.+||..--..+|..+ +.+.++-...+.-.+. |+++++=...+ + ..+|.-+..--.|.+-|.+|++|
T Consensus 135 Lt~dg~~Li~SDGS~~L~~~--dP~~f~~~~~i~V~~~g~pv~~LNELE~i----~-G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 135 LTSDGKRLIMSDGSSRLYFL--DPETFKEVRTIQVTDNGRPVSNLNELEYI----N-GKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp EEECSSCEEEE-SSSEEEEE---TTT-SEEEEEE-EETTEE---EEEEEEE----T-TEEEEEETTSSEEEEEETTT-BE
T ss_pred EEcCCCEEEEECCccceEEE--CCcccceEEEEEEEECCEECCCcEeEEEE----c-CEEEEEeCCCCeEEEEeCCCCeE
Confidence 34333778875444455555 4444544444433333 33333333334 2 25999999999999999999999
Q ss_pred eeeeeccccccC
Q psy10905 98 VNKLDCSKLVPC 109 (219)
Q Consensus 98 ~~~LD~skl~Pc 109 (219)
++.+|++.|.|-
T Consensus 208 ~~~iDls~L~~~ 219 (264)
T PF05096_consen 208 VGWIDLSGLRPE 219 (264)
T ss_dssp EEEEE-HHHHHH
T ss_pred EEEEEhhHhhhc
Confidence 999999999983
No 55
>KOG4714|consensus
Probab=72.29 E-value=23 Score=33.44 Aligned_cols=112 Identities=21% Similarity=0.399 Sum_probs=59.6
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeee----------eccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTV----------NHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l----------~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~t 94 (219)
..+=||..+|.+++|++++- +--.++ =||.|++| ++.+.+-.-| .+..||..|
T Consensus 193 ~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p--------------~~Lft~sedG-slw~wdas~ 255 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNP--------------EHLFTCSEDG-SLWHWDAST 255 (319)
T ss_pred cEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCc--------------hheeEecCCC-cEEEEcCCC
Confidence 67889999999999988853 211000 13334332 2222222222 244677665
Q ss_pred ceeeeeeecccccc--CCCCccc-ccccccccccCceeeeEeeecceEEEecceeEEEEEec
Q psy10905 95 RSIVNKLDCSKLVP--CSESLQS-ICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEK 153 (219)
Q Consensus 95 r~I~~~LD~skl~P--cSEsl~s-i~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea 153 (219)
.-+-..-.-+++-| .-.-.++ |+|+-=|....-.|+++-+++..|--||..|.|-+.+.
T Consensus 256 ~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 256 TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEecc
Confidence 22221111111111 0111222 44444444556677888888899999999999887653
No 56
>KOG0318|consensus
Probab=71.72 E-value=1e+02 Score=31.48 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=82.3
Q ss_pred ecccCCcEEEEEccCC-ceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccc
Q psy10905 29 CGESDGNISIYTMSEH-SVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLV 107 (219)
Q Consensus 29 ~G~~~g~Isi~~l~~~-~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~ 107 (219)
+| +||.|++|+=+.+ .|-..+. .+.-++-++-|.=+| ++. =..-+.-+-.+.-||++++++..++-|.+
T Consensus 208 ~g-sDgki~iyDGktge~vg~l~~-----~~aHkGsIfalsWsP-Ds~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~-- 277 (603)
T KOG0318|consen 208 AG-SDGKIYIYDGKTGEKVGELED-----SDAHKGSIFALSWSP-DST-QFLTVSADKTIKIWDVSTNSLVSTWPMGS-- 277 (603)
T ss_pred ec-CCccEEEEcCCCccEEEEecC-----CCCccccEEEEEECC-CCc-eEEEecCCceEEEEEeeccceEEEeecCC--
Confidence 44 8899999976643 4433331 112244455554322 222 23344556778899999999888876553
Q ss_pred cCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeecccccceeEEeeec
Q psy10905 108 PCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPLG 176 (219)
Q Consensus 108 PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~l~ 176 (219)
+ .++-||-.|-- ++.|-.=-..|-|=.+++.-+.|+-++..|--.|++.-..+
T Consensus 278 ----~-----------v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 278 ----T-----------VEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred ----c-----------hhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 2 35568888876 66666666778999999999999999999988888776554
No 57
>KOG0319|consensus
Probab=71.11 E-value=17 Score=37.91 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=91.0
Q ss_pred CCCceeeeeeeec----ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEE
Q psy10905 12 GASSVLHAITAVP----GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSV 87 (219)
Q Consensus 12 g~~~~i~s~a~v~----~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~V 87 (219)
|.|..++++++=+ ..|=.|..||.+.+|++.+.....+....|... |+-|.-. .....-.++-.+-++
T Consensus 145 G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~------vtsL~~~--~d~~~~ls~~RDkvi 216 (775)
T KOG0319|consen 145 GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSA------VTSLAFS--EDSLELLSVGRDKVI 216 (775)
T ss_pred CCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhh------eeeeeec--cCCceEEEeccCcEE
Confidence 4455555555544 677899999999999888654433333334322 4555432 224566777888888
Q ss_pred EEEecccceeeeeeeccccccCCCCcccccc-ccccc---------------------ccCc----------eeeeEee-
Q psy10905 88 YQWDTQARSIVNKLDCSKLVPCSESLQSICI-EEPLR---------------------QDQC----------HVTSVCI- 134 (219)
Q Consensus 88 yqw~~~tr~I~~~LD~skl~PcSEsl~si~i-ee~l~---------------------~~~~----------qVtaL~~- 134 (219)
+.||..+=+ +.|.+|--|++.+-.+ .+-+. ..+| .++.+..
T Consensus 217 ~vwd~~~~~------~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~ 290 (775)
T KOG0319|consen 217 IVWDLVQYK------KLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAI 290 (775)
T ss_pred EEeehhhhh------hhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceec
Confidence 888873221 2235555554433321 00000 0000 0232222
Q ss_pred -ecceEEEecceeEEEEEecCcceeeeeecccccceeEEeeec
Q psy10905 135 -LDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPLG 176 (219)
Q Consensus 135 -~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~l~ 176 (219)
..+|+.+=|+-=-|++.|..+|+|...+-+|-++|--..=+.
T Consensus 291 ~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 291 ESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred cccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 337888888888888889999999999999999887666554
No 58
>KOG0319|consensus
Probab=71.04 E-value=21 Score=37.34 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=62.8
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccc
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~t 94 (219)
+..||+.+ .=|=.|..+|++-||+++++..+... =-|+ +.|.-++..+--..++-.+=++...|+.||-++
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~g------GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHG------GVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCC------ceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 45666666 55668999999999999986555221 1222 234444432222224556667889999999986
Q ss_pred ceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec---ceEEEecce
Q psy10905 95 RSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD---TCLYIGTTW 145 (219)
Q Consensus 95 r~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~---~~LYIGTtw 145 (219)
+.- |-.. ++. ...+||+|+..+ +-||+|--.
T Consensus 181 ~~t-----cl~~-----------~~~----H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 181 KRT-----CLHT-----------MIL----HKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred Cch-----HHHH-----------HHh----hhhheeeeeeccCCceEEEeccCc
Confidence 543 3321 233 566899999876 455665433
No 59
>KOG0299|consensus
Probab=69.69 E-value=16 Score=36.20 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=97.1
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceE-----eeeeee-ccCCccc-----cceeEEEeecCCCCceEEEEEeC
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVT-----SHDTVN-HFHPVIS-----NVDVSFLVSSPSTSAWVWSYVYP 83 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs-----~~~~l~-h~~~~~~-----~~~V~~L~~~~~~~~~Vwsyv~p 83 (219)
+.|+|.=+ .-+-.+-.+|.|.=|..-.+... -.+.+- |+.+.-+ .-.+..|+. +++..+..-=--
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av--S~Dgkylatgg~ 222 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV--SSDGKYLATGGR 222 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE--cCCCcEEEecCC
Confidence 34444433 45555557777766644433211 111133 6665211 223334442 344445555567
Q ss_pred CcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec--ceEEEecceeEEEEEecCcceeeee
Q psy10905 84 GCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD--TCLYIGTTWGCIVVAEKDSLRPITV 161 (219)
Q Consensus 84 g~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~--~~LYIGTtwG~iiVaea~tLrPit~ 161 (219)
|+.|.-||.+|++-.+. +.--+.-|++|+.-. ++||.+-.-.-|=|-....|.=+..
T Consensus 223 d~~v~Iw~~~t~ehv~~---------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKV---------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred CceEEEecCcccchhhc---------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence 88999999999987665 223566788888866 9999999999999999999999999
Q ss_pred ecccccceeEEeeec-CeEEEecc
Q psy10905 162 FRPYEELVTAILPLG-GDIVTIGR 184 (219)
Q Consensus 162 frp~e~~V~~Ii~l~-g~l~TiG~ 184 (219)
|..|-..|-+|=.|+ +.++|+|-
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGg 305 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGG 305 (479)
T ss_pred HhCCccceeeechhcccceEEecc
Confidence 999999999999887 67888874
No 60
>KOG1409|consensus
Probab=69.43 E-value=49 Score=32.24 Aligned_cols=127 Identities=24% Similarity=0.323 Sum_probs=76.0
Q ss_pred eeeeeec--ceeeecccCCcEEEEEccCC--ceE-eeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEec
Q psy10905 18 HAITAVP--GELWCGESDGNISIYTMSEH--SVT-SHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDT 92 (219)
Q Consensus 18 ~s~a~v~--~eLW~G~~~g~Isi~~l~~~--~vs-~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~ 92 (219)
.+|.... +.|-||+.+|.++-|.+.++ +.+ ....+.| +.+|+.++.+- ..++|.|.-.--++.+. ..
T Consensus 72 ~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h------~~~v~~~if~~-~~e~V~s~~~dk~~~~h-c~ 143 (404)
T KOG1409|consen 72 SAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH------QARVSAIVFSL-THEWVLSTGKDKQFAWH-CT 143 (404)
T ss_pred eEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh------hcceeeEEecC-CceeEEEeccccceEEE-ee
Confidence 4444444 89999999999999988754 111 2233333 33566665321 23356666555444332 22
Q ss_pred ccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEE--ecCcceeeeeeccccccee
Q psy10905 93 QARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVA--EKDSLRPITVFRPYEELVT 170 (219)
Q Consensus 93 ~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVa--ea~tLrPit~frp~e~~V~ 170 (219)
++++=++.-.+.- ||+ +-+|-++ ..|||-.-|-|..+ +-..+.|++.|+|+++.|+
T Consensus 144 e~~~~lg~Y~~~~--~~t-------------~~~~d~~-------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~ 201 (404)
T KOG1409|consen 144 ESGNRLGGYNFET--PAS-------------ALQFDAL-------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT 201 (404)
T ss_pred ccCCcccceEeec--cCC-------------CCceeeE-------EEEecccccceEEEEEeecCCceEEEEcCcccceE
Confidence 3333333333322 222 2222222 78899888877765 5788999999999999998
Q ss_pred EEee
Q psy10905 171 AILP 174 (219)
Q Consensus 171 ~Ii~ 174 (219)
+..=
T Consensus 202 ~l~W 205 (404)
T KOG1409|consen 202 CLKW 205 (404)
T ss_pred EEEE
Confidence 8763
No 61
>KOG0322|consensus
Probab=67.67 E-value=2.9 Score=39.21 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=40.8
Q ss_pred ccCceeeeEeeec-ceEEEecceeEEEEEecCcceeeeeecccccc-eeEEeeec
Q psy10905 124 QDQCHVTSVCILD-TCLYIGTTWGCIVVAEKDSLRPITVFRPYEEL-VTAILPLG 176 (219)
Q Consensus 124 ~~~~qVtaL~~~~-~~LYIGTtwG~iiVaea~tLrPit~frp~e~~-V~~Ii~l~ 176 (219)
+-..-|++++... ++||=|+..|.+..-.-.|+||+..||-|-.+ |...=.++
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p 66 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP 66 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC
Confidence 4455678887765 88999999999999999999999999966543 33333444
No 62
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=66.63 E-value=13 Score=22.30 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=23.0
Q ss_pred Cceeeeeeeec--ceeeecccCCcEEEEE
Q psy10905 14 SSVLHAITAVP--GELWCGESDGNISIYT 40 (219)
Q Consensus 14 ~~~i~s~a~v~--~eLW~G~~~g~Isi~~ 40 (219)
...|.+++.-+ ..|.+|..||.|.||+
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 44578888888 8999999999999984
No 63
>KOG1539|consensus
Probab=66.11 E-value=1.9e+02 Score=31.04 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=41.8
Q ss_pred eeeEeeec---ceEEEecceeEEEEEecCcceeeeeecccccceeEEeeec
Q psy10905 129 VTSVCILD---TCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPLG 176 (219)
Q Consensus 129 VtaL~~~~---~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~l~ 176 (219)
+|||.=-. +.+-+|-+-|-+.+..-.|=+-+-.|+-|..-|++|-+-+
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsP 212 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSP 212 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCC
Confidence 77777655 6778999999999999999999999999999999998654
No 64
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=64.82 E-value=83 Score=30.18 Aligned_cols=115 Identities=13% Similarity=0.104 Sum_probs=72.4
Q ss_pred eecceeeecccCCcEEEEEccCCceEeeeeeeccCC-ccccceeEEEeecCCCC-ceEEEEEeCCcEEEEEecccceeee
Q psy10905 22 AVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHP-VISNVDVSFLVSSPSTS-AWVWSYVYPGCSVYQWDTQARSIVN 99 (219)
Q Consensus 22 ~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~-~~~~~~V~~L~~~~~~~-~~Vwsyv~pg~~Vyqw~~~tr~I~~ 99 (219)
+.+..+..+..+|++.-++.+++.+.+...+..... ..+.+...-.+ ... ..|+.... +-.||-+|.+|++++=
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~---~~~~~~V~v~~~-~g~v~AlD~~TG~~~W 134 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVA---YWDPRKVFFGTF-DGRLVALDAETGKQVW 134 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcE---EccCCeEEEecC-CCeEEEEECCCCCEee
Confidence 444788999889999999999888888776654311 11000000011 112 45665543 4589999999999999
Q ss_pred eeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecc---------eeEEEEEecCc
Q psy10905 100 KLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTT---------WGCIVVAEKDS 155 (219)
Q Consensus 100 ~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTt---------wG~iiVaea~t 155 (219)
+.+...-.+ ...--.++..+.++.+|+|+. -|.|.-+|+.|
T Consensus 135 ~~~~~~~~~---------------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T 184 (488)
T cd00216 135 KFGNNDQVP---------------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET 184 (488)
T ss_pred eecCCCCcC---------------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC
Confidence 988764210 000012345566788999975 47788888765
No 65
>PTZ00421 coronin; Provisional
Probab=61.23 E-value=1.7e+02 Score=28.68 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=47.5
Q ss_pred eeeeeeec---ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecc
Q psy10905 17 LHAITAVP---GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQ 93 (219)
Q Consensus 17 i~s~a~v~---~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~ 93 (219)
+.+++.=+ .-|.+|..||.|.||+++.+... ...-.|.++ |..+.-.+ +.. .......+-.|+.||..
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~-~~l~~h~~~------V~sla~sp-dG~-lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV-EVIKCHSDQ------ITSLEWNL-DGS-LLCTTSKDKKLNIIDPR 198 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE-EEEcCCCCc------eEEEEEEC-CCC-EEEEecCCCEEEEEECC
Confidence 45555543 46889999999999999865432 112235433 44444222 222 33334456789999999
Q ss_pred cceeeeeee
Q psy10905 94 ARSIVNKLD 102 (219)
Q Consensus 94 tr~I~~~LD 102 (219)
+++....+.
T Consensus 199 sg~~v~tl~ 207 (493)
T PTZ00421 199 DGTIVSSVE 207 (493)
T ss_pred CCcEEEEEe
Confidence 988877664
No 66
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=60.96 E-value=1.2e+02 Score=26.86 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=72.7
Q ss_pred CceeeeeeeecceeeecccCCcEEEEEccCCc-eEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEec
Q psy10905 14 SSVLHAITAVPGELWCGESDGNISIYTMSEHS-VTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDT 92 (219)
Q Consensus 14 ~~~i~s~a~v~~eLW~G~~~g~Isi~~l~~~~-vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~ 92 (219)
+..+++++.++..|=+| ..++|.||.+++.. +........ ...+..+.+ -...-+.+=++.|-.+++|+.
T Consensus 88 ~g~V~ai~~~~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~------~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 88 KGPVTAICSFNGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDS------PFYITSLSV--FKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp SS-EEEEEEETTEEEEE-ETTEEEEEEEETTSSEEEEEEE-B------SSSEEEEEE--ETTEEEEEESSSSEEEEEEET
T ss_pred cCcceEhhhhCCEEEEe-ecCEEEEEEccCcccchhhheecc------eEEEEEEec--cccEEEEEEcccCEEEEEEEc
Confidence 44478888888557777 45899999999887 554444422 124666653 223346667789999999998
Q ss_pred ccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee-c-ceEEEecceeEEEEEecC
Q psy10905 93 QARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL-D-TCLYIGTTWGCIVVAEKD 154 (219)
Q Consensus 93 ~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~-~-~~LYIGTtwG~iiVaea~ 154 (219)
+.+++. + ++-+ .....|+|...+ + +.+.+|..-|-|.+.+-.
T Consensus 159 ~~~~l~---------~-------va~d----~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 159 ENNKLI---------L-------VARD----YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTE-EE---------E-------EEEE----SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCCEEE---------E-------EEec----CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 555433 1 1111 235568888887 4 477788888999888854
No 67
>KOG0649|consensus
Probab=59.62 E-value=46 Score=31.35 Aligned_cols=90 Identities=11% Similarity=0.133 Sum_probs=54.9
Q ss_pred EEEeeCCCceeeeeeeecceeeecccCCcEEEEEccCCceE--eeeeee-----ccCC-ccccceeEEEeecCCCCceEE
Q psy10905 7 VLTELGASSVLHAITAVPGELWCGESDGNISIYTMSEHSVT--SHDTVN-----HFHP-VISNVDVSFLVSSPSTSAWVW 78 (219)
Q Consensus 7 ~ltelg~~~~i~s~a~v~~eLW~G~~~g~Isi~~l~~~~vs--~~~~l~-----h~~~-~~~~~~V~~L~~~~~~~~~Vw 78 (219)
+++|=+.-.+++.|++-+..|=.|.. |.|+-|--++.-=+ .-.... |-+. +.|.++.+-|. -.+..+.
T Consensus 55 iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld---P~enSi~ 130 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD---PSENSIL 130 (325)
T ss_pred eeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec---cCCCcEE
Confidence 34555555557889988855555544 99998865532111 111111 1111 35566777776 3444455
Q ss_pred EEEeCCcEEEEEecccceeeeee
Q psy10905 79 SYVYPGCSVYQWDTQARSIVNKL 101 (219)
Q Consensus 79 syv~pg~~Vyqw~~~tr~I~~~L 101 (219)
-+= -+|.+||||.++++|.-.+
T Consensus 131 ~Ag-GD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 131 FAG-GDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred Eec-CCeEEEEEEecCCEEEEEE
Confidence 554 7799999999999998665
No 68
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=59.49 E-value=17 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=18.9
Q ss_pred eecceEEEecceeEEEEEecCcc
Q psy10905 134 ILDTCLYIGTTWGCIVVAEKDSL 156 (219)
Q Consensus 134 ~~~~~LYIGTtwG~iiVaea~tL 156 (219)
..++.+|+|+..|.|...|+.+=
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G 26 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTG 26 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccC
Confidence 34568999999999999998653
No 69
>KOG0318|consensus
Probab=56.63 E-value=93 Score=31.81 Aligned_cols=83 Identities=18% Similarity=0.339 Sum_probs=54.9
Q ss_pred ceeeecccCCcEEEEEccCCce-EeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceee-----
Q psy10905 25 GELWCGESDGNISIYTMSEHSV-TSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIV----- 98 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~v-s~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~----- 98 (219)
.|.=.|..||.+.||.|..+.+ .....+.|.-+ ++.+.=++ + .....+..-.=+|..||+++|++.
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~------iT~vaySp-d-~~yla~~Da~rkvv~yd~~s~~~~~~~w~ 527 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA------ITDVAYSP-D-GAYLAAGDASRKVVLYDVASREVKTNRWA 527 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCC------ceEEEECC-C-CcEEEEeccCCcEEEEEcccCceecceee
Confidence 8999999999999999997664 46677777655 44443222 1 124455556668889999999873
Q ss_pred ---eeeeccccccCCCCccc
Q psy10905 99 ---NKLDCSKLVPCSESLQS 115 (219)
Q Consensus 99 ---~~LD~skl~PcSEsl~s 115 (219)
.|+.|-.--|-++.+.|
T Consensus 528 FHtakI~~~aWsP~n~~vAT 547 (603)
T KOG0318|consen 528 FHTAKINCVAWSPNNKLVAT 547 (603)
T ss_pred eeeeeEEEEEeCCCceEEEe
Confidence 34555555555544433
No 70
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=56.05 E-value=32 Score=29.22 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=34.6
Q ss_pred eeecceEEEecceeEEEEEec-CcceeeeeecccccceeEEeeec--CeEEEeccc
Q psy10905 133 CILDTCLYIGTTWGCIVVAEK-DSLRPITVFRPYEELVTAILPLG--GDIVTIGRG 185 (219)
Q Consensus 133 ~~~~~~LYIGTtwG~iiVaea-~tLrPit~frp~e~~V~~Ii~l~--g~l~TiG~G 185 (219)
+..++.|||||.-| |.+.+. ..-.|..+..... |+.|..++ +.++.+-+|
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~--I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS--ITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecce--EEEEEEecccCEEEEEcCC
Confidence 34579999999999 777776 5566666666555 88888887 334444333
No 71
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=55.78 E-value=41 Score=20.51 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=26.6
Q ss_pred CceEEEEEeCCcEEEEEecccceeeeeeeccc
Q psy10905 74 SAWVWSYVYPGCSVYQWDTQARSIVNKLDCSK 105 (219)
Q Consensus 74 ~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~sk 105 (219)
...+|..-+-+-.|..+|..+++++.++++.+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 44678888888899999999999999988753
No 72
>KOG0283|consensus
Probab=55.46 E-value=2.2e+02 Score=29.94 Aligned_cols=130 Identities=21% Similarity=0.337 Sum_probs=83.0
Q ss_pred eEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee--cceEEE
Q psy10905 64 VSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL--DTCLYI 141 (219)
Q Consensus 64 V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~--~~~LYI 141 (219)
|++.+=-|.++. .+..=.-+++|..|+.-.+||.---||.+++ ||+|.. |....|
T Consensus 412 VTcVaFnPvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lI----------------------TAvcy~PdGk~avI 468 (712)
T KOG0283|consen 412 VTCVAFNPVDDR-YFISGSLDGKVRLWSISDKKVVDWNDLRDLI----------------------TAVCYSPDGKGAVI 468 (712)
T ss_pred eEEEEecccCCC-cEeecccccceEEeecCcCeeEeehhhhhhh----------------------eeEEeccCCceEEE
Confidence 444443443433 4444456789999999999999999998754 477774 578899
Q ss_pred ecceeEEEEEecCcceeeeeeccccc--------ceeEEeeecC----------------------eEEEecccccccee
Q psy10905 142 GTTWGCIVVAEKDSLRPITVFRPYEE--------LVTAILPLGG----------------------DIVTIGRGYRSLVS 191 (219)
Q Consensus 142 GTtwG~iiVaea~tLrPit~frp~e~--------~V~~Ii~l~g----------------------~l~TiG~GyR~L~~ 191 (219)
||-.|-..+.++.-|++.+-+.=.-- .|+.+=.++| +|+.-=+||++.-.
T Consensus 469 Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S 548 (712)
T KOG0283|consen 469 GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS 548 (712)
T ss_pred EEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc
Confidence 99999999999888876554421111 3444433332 14444577877665
Q ss_pred ecccCcccccc------CCCeEEEEeecCCcc
Q psy10905 192 RYTNSTASSQC------KENHFALLWSSQNWA 217 (219)
Q Consensus 192 r~~~~~~s~~~------~~~~~~llWr~~~W~ 217 (219)
+.-. +.+.|- ..++++-+|+.+.-.
T Consensus 549 Q~~A-sfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 549 QISA-SFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceee-eEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4321 122222 257888899986543
No 73
>KOG4328|consensus
Probab=54.43 E-value=74 Score=31.88 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=75.4
Q ss_pred Cceeeeeeeec----ceeeecccCCcEEEEEcc-CCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEE
Q psy10905 14 SSVLHAITAVP----GELWCGESDGNISIYTMS-EHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVY 88 (219)
Q Consensus 14 ~~~i~s~a~v~----~eLW~G~~~g~Isi~~l~-~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vy 88 (219)
+.+|.+++.-+ .=+=+|-.-|+|-+|+++ ++....-..+-|+. .++|..|.-.|++.+.|+|.=|-|++=+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h----s~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH----SGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC----CccccceEecCCChhheeeeccCceeee
Confidence 34578999888 457899999999999996 22333333333333 3568888878888889999999998766
Q ss_pred EEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEe
Q psy10905 89 QWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAE 152 (219)
Q Consensus 89 qw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVae 152 (219)
| |+++. -+|-+-+.+ .+...-..||++| .+.-+|+|+.||..=|.|
T Consensus 262 ~------------D~~~~--i~e~v~s~~-~d~~~fs~~d~~~---e~~~vl~~~~~G~f~~iD 307 (498)
T KOG4328|consen 262 Q------------DFEGN--ISEEVLSLD-TDNIWFSSLDFSA---ESRSVLFGDNVGNFNVID 307 (498)
T ss_pred e------------eecch--hhHHHhhcC-ccceeeeeccccC---CCccEEEeecccceEEEE
Confidence 5 33331 122222222 1112334445443 346689999999777776
No 74
>KOG0315|consensus
Probab=53.40 E-value=1.8e+02 Score=27.44 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.5
Q ss_pred ceeeecccCCcEEEEEccCCceE
Q psy10905 25 GELWCGESDGNISIYTMSEHSVT 47 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs 47 (219)
.||-.|..+|.|-||+|+++..+
T Consensus 137 teLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccc
Confidence 99999999999999999986543
No 75
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=52.74 E-value=43 Score=30.25 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=42.7
Q ss_pred CcEEEEEecccceeeeeeeccc-cccCCCCcccccccccccccCceeeeEeeecceEEEecce-eEEEEEecCcc
Q psy10905 84 GCSVYQWDTQARSIVNKLDCSK-LVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTW-GCIVVAEKDSL 156 (219)
Q Consensus 84 g~~Vyqw~~~tr~I~~~LD~sk-l~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtw-G~iiVaea~tL 156 (219)
+.++.+||..|.+++.+.++.+ ++|...-|..+.++. ....| .+...||.=+. +-|||.|-.+=
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~--~~~~~-------~~~~aYItD~~~~glIV~dl~~~ 98 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDV--RDGNC-------DDGFAYITDSGGPGLIVYDLATG 98 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEEC--TTTTS--------SEEEEEEETTTCEEEEEETTTT
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEc--cCCCC-------cceEEEEeCCCcCcEEEEEccCC
Confidence 4799999999999999999997 666555667776664 22233 23677887666 68888886553
No 76
>KOG0289|consensus
Probab=52.26 E-value=1.4e+02 Score=29.92 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=54.3
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCC-ceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcE-EEEEec
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEH-SVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCS-VYQWDT 92 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~-~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~-Vyqw~~ 92 (219)
++|+++=+ .=+=+|-.||.+.||++++. +++-+.- |. .+|.-+. =++++.|-++.-.-- |..||-
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg--ht------~~vk~i~---FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG--HT------GPVKAIS---FSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC--CC------CceeEEE---eccCceEEEEEecCCeEEEEEe
Confidence 34444444 55667889999999998854 3332222 43 3466665 466777777755433 888964
Q ss_pred ccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec
Q psy10905 93 QARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD 136 (219)
Q Consensus 93 ~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~ 136 (219)
+|+. +.++|.+++ .+ -|.+++...
T Consensus 419 -----------RKl~----n~kt~~l~~----~~-~v~s~~fD~ 442 (506)
T KOG0289|consen 419 -----------RKLK----NFKTIQLDE----KK-EVNSLSFDQ 442 (506)
T ss_pred -----------hhhc----ccceeeccc----cc-cceeEEEcC
Confidence 4432 677777775 22 566666643
No 77
>KOG4190|consensus
Probab=51.45 E-value=28 Score=36.08 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=59.5
Q ss_pred eCCcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeee
Q psy10905 82 YPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITV 161 (219)
Q Consensus 82 ~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~ 161 (219)
..-+.|.++|..+..-+|++-++. .|. -.+--+--|++=.++.|-.|.+-|||+++|+-+=.-|.-
T Consensus 848 saeSTVKl~DaRsce~~~E~kVcn-a~~-------------Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 848 SAESTVKLFDARSCEWTCELKVCN-APG-------------PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred cchhhheeeecccccceeeEEecc-CCC-------------CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc
Confidence 556789999999999999998874 111 112223334444679999999999999999999999999
Q ss_pred ecccccceeEE
Q psy10905 162 FRPYEELVTAI 172 (219)
Q Consensus 162 frp~e~~V~~I 172 (219)
.||.|-|.-..
T Consensus 914 wrpmecdllql 924 (1034)
T KOG4190|consen 914 WRPMECDLLQL 924 (1034)
T ss_pred CCcccchhhhh
Confidence 99999887544
No 78
>KOG0639|consensus
Probab=48.43 E-value=1.5e+02 Score=30.59 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=72.5
Q ss_pred ceeeecccCCcEEEEEccCC-c---eEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecc--cceee
Q psy10905 25 GELWCGESDGNISIYTMSEH-S---VTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQ--ARSIV 98 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~-~---vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~--tr~I~ 98 (219)
+.+.+|++ |-|.||++..- + ++-.+.++. ++.-.++... .++--.-.-=+ .+.|-.||-. |-+|.
T Consensus 432 rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~r-----dnyiRSckL~--pdgrtLivGGe-astlsiWDLAapTprik 502 (705)
T KOG0639|consen 432 RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNR-----DNYIRSCKLL--PDGRTLIVGGE-ASTLSIWDLAAPTPRIK 502 (705)
T ss_pred ceeEecCC-CeEEEeeccCCCCCCccccccccCc-----ccceeeeEec--CCCceEEeccc-cceeeeeeccCCCcchh
Confidence 99999987 99999999832 1 112222211 1122222221 11111111112 5678888854 56777
Q ss_pred eeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeecccccceeEEeee
Q psy10905 99 NKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPL 175 (219)
Q Consensus 99 ~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~l 175 (219)
.+|+++. --||--|+.....-.|---+-|.|.|-|---=.-..-|..|..-+++|..=
T Consensus 503 aeltssa-------------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 503 AELTSSA-------------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred hhcCCcc-------------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 7777664 456655555555667777788999998844444445566777788888755
No 79
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=48.09 E-value=1.5e+02 Score=24.05 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.9
Q ss_pred eeeeeeec------ceeeecccCCcEEEEEccCCce
Q psy10905 17 LHAITAVP------GELWCGESDGNISIYTMSEHSV 46 (219)
Q Consensus 17 i~s~a~v~------~eLW~G~~~g~Isi~~l~~~~v 46 (219)
..+||+.+ .||=+|-.|.-|.|| +++.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf--~~~e~ 35 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVF--KGDEI 35 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEE--eCCcE
Confidence 46788877 899999999999999 65543
No 80
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=47.90 E-value=1.7e+02 Score=24.76 Aligned_cols=129 Identities=16% Similarity=0.272 Sum_probs=71.2
Q ss_pred eeeeeeec-ceeeecccCCcEEEEEccCCceEeeee---------eeccCCccccceeEEEeecCCCCceEEEEEeCCcE
Q psy10905 17 LHAITAVP-GELWCGESDGNISIYTMSEHSVTSHDT---------VNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCS 86 (219)
Q Consensus 17 i~s~a~v~-~eLW~G~~~g~Isi~~l~~~~vs~~~~---------l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~ 86 (219)
+.-++++. ..+=.=-++|++.+|+|++=....... ..+--+...++....-.........+-.+++..-.
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~ 117 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKIL 117 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEE
Confidence 55566666 122122245889999888432222111 00111112233333311122233357788888889
Q ss_pred EEEEecccc---eeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeec
Q psy10905 87 VYQWDTQAR---SIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFR 163 (219)
Q Consensus 87 Vyqw~~~tr---~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~fr 163 (219)
||+|+.... +...++++. ..+++|+.+++.+.||+..|- .+.+..+..|..++.
T Consensus 118 i~~~~~~~~~f~~~~ke~~lp----------------------~~~~~i~~~~~~i~v~~~~~f-~~idl~~~~~~~l~~ 174 (275)
T PF00780_consen 118 IYEWNDPRNSFSKLLKEISLP----------------------DPPSSIAFLGNKICVGTSKGF-YLIDLNTGSPSELLD 174 (275)
T ss_pred EEEEECCcccccceeEEEEcC----------------------CCcEEEEEeCCEEEEEeCCce-EEEecCCCCceEEeC
Confidence 999998532 344444433 235578888999999998884 455666777766766
Q ss_pred ccccc
Q psy10905 164 PYEEL 168 (219)
Q Consensus 164 p~e~~ 168 (219)
+-..+
T Consensus 175 ~~~~~ 179 (275)
T PF00780_consen 175 PSDSS 179 (275)
T ss_pred ccCCc
Confidence 55444
No 81
>KOG0284|consensus
Probab=47.60 E-value=66 Score=31.91 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=58.1
Q ss_pred cEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec--ceEEEecceeEEEEEecCcceeeeee
Q psy10905 85 CSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD--TCLYIGTTWGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 85 ~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~--~~LYIGTtwG~iiVaea~tLrPit~f 162 (219)
.-|..||+.|++=++.|- .-+.-|.++-... +.|--|--==.+=|.|-.+|.-+-+|
T Consensus 244 nlVKlWDprSg~cl~tlh---------------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLH---------------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ceeEeecCCCcchhhhhh---------------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 479999999987554432 2344555555543 33332222225567888899999999
Q ss_pred cccccceeEE--eeecCeEEEeccccccceeecc
Q psy10905 163 RPYEELVTAI--LPLGGDIVTIGRGYRSLVSRYT 194 (219)
Q Consensus 163 rp~e~~V~~I--i~l~g~l~TiG~GyR~L~~r~~ 194 (219)
|.|+.||+.+ .|+...|.|.|-.=-++..--+
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEec
Confidence 9999999999 7887556665554444444433
No 82
>KOG0308|consensus
Probab=47.08 E-value=1.4e+02 Score=31.27 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=58.7
Q ss_pred CCcEEEEEecccc--eeeeeeeccccccCCCCcccccccccccccCceeeeEeeecc--eEEEecceeEEEEEecCccee
Q psy10905 83 PGCSVYQWDTQAR--SIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDT--CLYIGTTWGCIVVAEKDSLRP 158 (219)
Q Consensus 83 pg~~Vyqw~~~tr--~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~--~LYIGTtwG~iiVaea~tLrP 158 (219)
-+=.|..||.+++ +.+++.|-- |.+.. - +..+-.|-||+...+ -+-=|-+-++|.+-|+-|=.-
T Consensus 138 LD~~IflWDin~~~~~l~~s~n~~---t~~sl-~--------sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k 205 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATLVASFNNV---TVNSL-G--------SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK 205 (735)
T ss_pred CCccEEEEEccCcchhhhhhcccc---ccccC-C--------CCCccceeeeecCCcceEEEecCcccceEEeccccccc
Confidence 4567999999988 666666543 21111 0 123334555555443 445578899999999999999
Q ss_pred eeeecccccceeEEeeec
Q psy10905 159 ITVFRPYEELVTAILPLG 176 (219)
Q Consensus 159 it~frp~e~~V~~Ii~l~ 176 (219)
++-+|.|.++||.++..+
T Consensus 206 imkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 206 IMKLRGHTDNVRVLLVND 223 (735)
T ss_pred eeeeeccccceEEEEEcC
Confidence 999999999999999886
No 83
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=45.61 E-value=32 Score=27.88 Aligned_cols=29 Identities=31% Similarity=0.474 Sum_probs=25.3
Q ss_pred eeeeEeeec------ceEEEecceeEEEEEecCcc
Q psy10905 128 HVTSVCILD------TCLYIGTTWGCIVVAEKDSL 156 (219)
Q Consensus 128 qVtaL~~~~------~~LYIGTtwG~iiVaea~tL 156 (219)
+|+|||+++ ++|.||+.=.+|=|.+...+
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~ 35 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI 35 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE
Confidence 599999987 89999999999988886655
No 84
>KOG0265|consensus
Probab=44.76 E-value=1.7e+02 Score=28.03 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=63.0
Q ss_pred ceeeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEec
Q psy10905 15 SVLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDT 92 (219)
Q Consensus 15 ~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~ 92 (219)
+++++.+.=+ -|+=+|.-||.|.||+|+.+...-.- --|-|+ |++|.-++ ..+ ---..+-.+.|.+||+
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l-sGh~Dt------It~lsls~-~gs-~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL-SGHADT------ITGLSLSR-YGS-FLLSNSMDNTVRVWDV 245 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEe-ecccCc------eeeEEecc-CCC-ccccccccceEEEEEe
Confidence 3455555555 89999999999999999854332110 023333 55664211 111 1223455678888876
Q ss_pred ccceeeee---------eeccc-cccCCCCcccccccccccccCceeeeEeeec-ceEEEecceeEEEEE
Q psy10905 93 QARSIVNK---------LDCSK-LVPCSESLQSICIEEPLRQDQCHVTSVCILD-TCLYIGTTWGCIVVA 151 (219)
Q Consensus 93 ~tr~I~~~---------LD~sk-l~PcSEsl~si~iee~l~~~~~qVtaL~~~~-~~LYIGTtwG~iiVa 151 (219)
.-...-+| ..+.| |+-||-| +..-.|+|-.+.. .+.|=-|+.+++..+
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~csws-----------p~~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWS-----------PNGTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeecc-----------CCCCccccccccceEEEeecccccEEEEc
Confidence 54433333 45555 6666644 4555666666553 233333444444443
No 85
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=44.69 E-value=1.3e+02 Score=28.75 Aligned_cols=110 Identities=14% Similarity=0.188 Sum_probs=65.9
Q ss_pred eeecccCCcEEEEEccCCceEeeeeeeccCCc------cc-cceeE---------EEeecCCCCceEEEEEeCCcEEEEE
Q psy10905 27 LWCGESDGNISIYTMSEHSVTSHDTVNHFHPV------IS-NVDVS---------FLVSSPSTSAWVWSYVYPGCSVYQW 90 (219)
Q Consensus 27 LW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~------~~-~~~V~---------~L~~~~~~~~~Vwsyv~pg~~Vyqw 90 (219)
+|.-. +|.|.-.++.++.+++....+-..+. -| +-++. ++.. ....-|+-=.||..|..+
T Consensus 199 ~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM---h~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 199 YFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM---HQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp EEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE---EE--TT-TTS-EEEEEEE
T ss_pred EEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe---cCCCCCCccCCceEEEEE
Confidence 45554 48899998998888877777654421 00 11111 1111 111236666899999999
Q ss_pred ecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec--ceEEEecc--eeEEEEEecCcceeeeee
Q psy10905 91 DTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD--TCLYIGTT--WGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 91 ~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~--~~LYIGTt--wG~iiVaea~tLrPit~f 162 (219)
|.+|||.+.|++... | +.+|++.. .-|.++++ -|-|.|.|+.|-+++...
T Consensus 275 D~~t~krv~Ri~l~~--~--------------------~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 275 DLKTHKRVARIPLEH--P--------------------IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ETTTTEEEEEEEEEE--E--------------------ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ECCCCeEEEEEeCCC--c--------------------cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 999999999998864 2 22555544 32444443 478999999998876544
No 86
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=43.05 E-value=3e+02 Score=26.07 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCceEEEEEeCCcEEEEEe----------------cccceeeeeeeccc---ccc-CCCCccc-----------------
Q psy10905 73 TSAWVWSYVYPGCSVYQWD----------------TQARSIVNKLDCSK---LVP-CSESLQS----------------- 115 (219)
Q Consensus 73 ~~~~Vwsyv~pg~~Vyqw~----------------~~tr~I~~~LD~sk---l~P-cSEsl~s----------------- 115 (219)
+..+.|..-.|+.+=.... -.+|+++.|+-+.+ ..| +.+..+.
T Consensus 67 ~~gyly~igSHS~kRk~~k~~~~~~~~~rl~~v~~~~nR~~L~Ripv~~~~~~~~~~~~~~~~~~~~~A~~l~~~~~~~~ 146 (330)
T PF12275_consen 67 ADGYLYVIGSHSRKRKGPKPDDSDKNLKRLAKVKWEPNRYFLARIPVVGNGDGVPLVVEPVKPFDKLTAALLKGSKSSNR 146 (330)
T ss_pred cCCeEEEEccCccCCCCcccccchHHHHHHhhcccCcChhhEEEEEEecCCCCccccccccCcccccchhhccccccchH
Confidence 5567999999998887766 67889999988876 333 2222222
Q ss_pred ----cccccccccc--------CceeeeEeeecceEEEec
Q psy10905 116 ----ICIEEPLRQD--------QCHVTSVCILDTCLYIGT 143 (219)
Q Consensus 116 ----i~iee~l~~~--------~~qVtaL~~~~~~LYIGT 143 (219)
+.-+.||.+. ---|--|++.++.||+|-
T Consensus 147 L~~~l~~d~~l~~~~~~p~k~nG~nIEGlA~~~~~l~lGf 186 (330)
T PF12275_consen 147 LTEALAKDPHLGPFLRIPSKDNGFNIEGLAVDPDRLYLGF 186 (330)
T ss_pred HHHHhhcCcchhhhhcCCCccCCCCeeeeEecCCeEEEEe
Confidence 1123344331 234668888889999996
No 87
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=42.96 E-value=34 Score=19.95 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=13.7
Q ss_pred CceeeeEeeec-ceEEEecc
Q psy10905 126 QCHVTSVCILD-TCLYIGTT 144 (219)
Q Consensus 126 ~~qVtaL~~~~-~~LYIGTt 144 (219)
...|.+|+-.. +.|||||-
T Consensus 4 ~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEET
T ss_pred CCeEEEEEEcCCcCEEEEeC
Confidence 34677777755 89999984
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=42.53 E-value=1.4e+02 Score=27.61 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=51.2
Q ss_pred eCCcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecc-eeEEEEEecCcceeee
Q psy10905 82 YPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTT-WGCIVVAEKDSLRPIT 160 (219)
Q Consensus 82 ~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTt-wG~iiVaea~tLrPit 160 (219)
|-.|.|+.+|.+|++++.+.++.+ +.++- .+++.++.||.=|= -|...+-|+.+|+++.
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~l~~--------------~~FgE------Git~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVPLPP--------------RYFGE------GITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE-TT--------------T--EE------EEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CCcEEEEEEECCCCcEEEEEECCc--------------cccce------eEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 455899999999999999887664 11111 57778999998764 3788999999999999
Q ss_pred eecccccceeEEe
Q psy10905 161 VFRPYEELVTAIL 173 (219)
Q Consensus 161 ~frp~e~~V~~Ii 173 (219)
-| +|+++==.++
T Consensus 125 ~~-~y~~EGWGLt 136 (264)
T PF05096_consen 125 TF-PYPGEGWGLT 136 (264)
T ss_dssp EE-E-SSS--EEE
T ss_pred EE-ecCCcceEEE
Confidence 88 7776544444
No 89
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=42.33 E-value=1.4e+02 Score=26.05 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=34.6
Q ss_pred ccCCcEEEEEccC-CceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecc
Q psy10905 31 ESDGNISIYTMSE-HSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQ 93 (219)
Q Consensus 31 ~~~g~Isi~~l~~-~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~ 93 (219)
..+|.|++|++.+ +.+.....+.+... ...|+.++ +...++..-++...|+.|+.+
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~------~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQ------VQPMVISP-DKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCC------CccEEECC-CCCEEEEEECCCCcEEEEEEC
Confidence 4568999999973 45555555544322 22344333 555677777777778778775
No 90
>KOG0271|consensus
Probab=40.78 E-value=60 Score=32.15 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=43.0
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccc
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~t 94 (219)
....|..+ -.||+|.+-..++.| +. |-. .|++.+- +++.-.-..-..++.+..||+.|
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasf--RG----------Hv~------~VYqvaw--saDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASF--RG----------HVA------AVYQVAW--SADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhh--hh----------ccc------eeEEEEe--ccCccEEEEcCCCceEEEEEeee
Confidence 45566666 789999776667655 32 222 2455442 23334556667889999999999
Q ss_pred ceeeeee
Q psy10905 95 RSIVNKL 101 (219)
Q Consensus 95 r~I~~~L 101 (219)
+|+...|
T Consensus 441 kKl~~DL 447 (480)
T KOG0271|consen 441 KKLKQDL 447 (480)
T ss_pred eeecccC
Confidence 9987655
No 91
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=40.61 E-value=2.2e+02 Score=23.89 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=59.6
Q ss_pred ceee-ecccCCcEEEEEccCC-c-eEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeee
Q psy10905 25 GELW-CGESDGNISIYTMSEH-S-VTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKL 101 (219)
Q Consensus 25 ~eLW-~G~~~g~Isi~~l~~~-~-vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~L 101 (219)
..|+ +-...++|..|+++++ . ++....+.++...- ...--|+. .+...+|++.+-+-.|+.+|.+ ++++.++
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g~pDG~~v--D~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP--GYPDGLAV--DSDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS--CEEEEEEE--BTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCC--cCCCcceE--cCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 5676 4445678999999844 3 66555554443311 11233442 2334699999999999999998 7777766
Q ss_pred eccccccCCCCcccccccccccccCceeeeEeee---cceEEEecc
Q psy10905 102 DCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL---DTCLYIGTT 144 (219)
Q Consensus 102 D~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~---~~~LYIGTt 144 (219)
.+- .. ++|+++.- .++|||=|.
T Consensus 221 ~~p--------------------~~-~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 221 ELP--------------------VP-RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp E-S--------------------SS-SEEEEEEESTTSSEEEEEEB
T ss_pred cCC--------------------CC-CEEEEEEECCCCCEEEEEeC
Confidence 532 12 67788884 388999764
No 92
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=40.43 E-value=3.4e+02 Score=26.04 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=43.4
Q ss_pred cEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeee
Q psy10905 85 CSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 85 ~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~f 162 (219)
-.|+-.|..|++++=+.+..+.- .+ .++. .. ..-+.+.+.++.||+|+.-|-|.-+|+.|=+.+--+
T Consensus 366 G~l~AlD~~tG~~~W~~~~~~~~-~~-----~~~g----~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 366 GGLAALDPKTGKVVWEKREGTIR-DS-----WNIG----FP-HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred eEEEEEeCCCCcEeeEeeCCccc-cc-----cccC----Cc-ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 46888888888888777765211 11 0010 11 122457788899999999999999997665554443
No 93
>KOG0281|consensus
Probab=40.06 E-value=58 Score=32.09 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=48.6
Q ss_pred CceEEEeeCCCce----eeeeeeecceeeecccCCcEEEEEccCCceEeeeee-eccCC-ccccceeEEEeecCCCCceE
Q psy10905 4 GSFVLTELGASSV----LHAITAVPGELWCGESDGNISIYTMSEHSVTSHDTV-NHFHP-VISNVDVSFLVSSPSTSAWV 77 (219)
Q Consensus 4 ~~f~ltelg~~~~----i~s~a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l-~h~~~-~~~~~~V~~L~~~~~~~~~V 77 (219)
|-|.|+.+.-+++ .+|+--=+--+=-|-+|+.|+||+.++ ..+...| -|... .|=+..-+-++++
T Consensus 183 Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd~rviisG------- 253 (499)
T KOG0281|consen 183 GRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYDERVIVSG------- 253 (499)
T ss_pred cceeeeeecCCcccCCceEEEEecchhhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeeccceEEEec-------
Confidence 5677777777665 344433335566788999999996552 2211111 23222 1111112233433
Q ss_pred EEEEeCCcEEEEEecccceeeeee
Q psy10905 78 WSYVYPGCSVYQWDTQARSIVNKL 101 (219)
Q Consensus 78 wsyv~pg~~Vyqw~~~tr~I~~~L 101 (219)
.-++.|..||++||+.++.|
T Consensus 254 ----SSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 254 ----SSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred ----CCCceEEEEeccCCchhhHH
Confidence 34578999999999988764
No 94
>KOG0291|consensus
Probab=39.98 E-value=87 Score=33.35 Aligned_cols=68 Identities=15% Similarity=0.346 Sum_probs=46.3
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeee
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVN 99 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~ 99 (219)
+-|-+--=||++.+|+|+.- -.+....-|+| .++.+++.-+ +.+-|...-.-.--++.|+++|+|++-
T Consensus 405 ~~llssSLDGtVRAwDlkRY--rNfRTft~P~p----~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRY--RNFRTFTSPEP----IQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred CEEEEeecCCeEEeeeeccc--ceeeeecCCCc----eeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeee
Confidence 56666667888888888742 22333334444 3788887543 345677777777789999999999863
No 95
>KOG0308|consensus
Probab=39.47 E-value=1.2e+02 Score=31.69 Aligned_cols=118 Identities=17% Similarity=0.292 Sum_probs=74.9
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccc
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~t 94 (219)
++.+-+-+ +++=.|.+||.|.+|+|+.- . | ..++.+ -.+.||+--.--++=+.+....
T Consensus 216 Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-----r--------C---l~T~~v----H~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 216 VRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-----R--------C---LATYIV----HKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred eEEEEEcCCCCeEeecCCCceEEeeecccc-----c--------e---eeeEEe----ccCceEEEeeCCCcceEEecCC
Confidence 34444444 78888889999999977741 1 1 122222 2334777666666666666666
Q ss_pred ceeeeeeeccccccCCCCcccccccccccccCceeeeEeee--cceEEEecceeEEEEEecCcceeeeeeccccc
Q psy10905 95 RSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL--DTCLYIGTTWGCIVVAEKDSLRPITVFRPYEE 167 (219)
Q Consensus 95 r~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~--~~~LYIGTtwG~iiVaea~tLrPit~frp~e~ 167 (219)
-+.+-|-|++. | .+..-|..|+ ..|.-|.+. +++.||+|+-+-| .+-.++|+..+++++.
T Consensus 276 d~~i~~Tdl~n--~--~~~tlick~d------aPv~~l~~~~~~~~~WvtTtds~I---~rW~~~~~~~l~~s~~ 337 (735)
T KOG0308|consen 276 DGNIYRTDLRN--P--AKSTLICKED------APVLKLHLHEHDNSVWVTTTDSSI---KRWKLEPDIALSVSGD 337 (735)
T ss_pred CCcEEecccCC--c--hhheEeecCC------CchhhhhhccccCCceeeeccccc---eecCCccccccccCCC
Confidence 66667778776 4 2223344444 356667776 5888999998876 5777888888887764
No 96
>KOG0305|consensus
Probab=38.46 E-value=4.2e+02 Score=26.54 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=98.2
Q ss_pred EEEeeCCCceeeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCC
Q psy10905 7 VLTELGASSVLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPG 84 (219)
Q Consensus 7 ~ltelg~~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg 84 (219)
.|.++| .+.++|..--+ ..|=.|..+|.+.||+..+.+-.-.-...| ...|..|+ -...|++.-..+
T Consensus 211 ~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h------~~rvg~la----W~~~~lssGsr~ 279 (484)
T KOG0305|consen 211 ELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH------ASRVGSLA----WNSSVLSSGSRD 279 (484)
T ss_pred EeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc------CceeEEEe----ccCceEEEecCC
Confidence 344555 23355555554 888889999999999877542221111113 23466676 335699999988
Q ss_pred cEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee--cceEEEecceeEEEEEecCcceeeeee
Q psy10905 85 CSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL--DTCLYIGTTWGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 85 ~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~--~~~LYIGTtwG~iiVaea~tLrPit~f 162 (219)
=.+.++|..+.+-..+- +. .-+-+|-.|... +.||=-|-.-..+-|=|.....|+--|
T Consensus 280 ~~I~~~dvR~~~~~~~~----------------~~----~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~ 339 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVST----------------LQ----GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF 339 (484)
T ss_pred CcEEEEEEecchhhhhh----------------hh----cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence 88999998877655441 12 233345555553 366666777777777888999999999
Q ss_pred cccccceeEEe--eecCeEEEecccccc
Q psy10905 163 RPYEELVTAIL--PLGGDIVTIGRGYRS 188 (219)
Q Consensus 163 rp~e~~V~~Ii--~l~g~l~TiG~GyR~ 188 (219)
-.|...||++. |--..|+.+|-|=-+
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcc
Confidence 99999999986 554324444444433
No 97
>KOG0278|consensus
Probab=37.81 E-value=1.1e+02 Score=29.10 Aligned_cols=107 Identities=13% Similarity=0.231 Sum_probs=65.1
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
.-|=+|.-+.-+-||++....----+.=.|+. ++.-...+ ..+...-|..+ .=.|.+||..|+++.++|...
T Consensus 113 ~~lltgg~ekllrvfdln~p~App~E~~ghtg----~Ir~v~wc---~eD~~iLSSad-d~tVRLWD~rTgt~v~sL~~~ 184 (334)
T KOG0278|consen 113 NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG----GIRTVLWC---HEDKCILSSAD-DKTVRLWDHRTGTEVQSLEFN 184 (334)
T ss_pred hhhhccchHHHhhhhhccCCCCCchhhcCCCC----cceeEEEe---ccCceEEeecc-CCceEEEEeccCcEEEEEecC
Confidence 66777777777777765522111111112211 22222334 24445677744 446899999999999998764
Q ss_pred ccccCCCCcccccccccccccCceeeeEeeecceEEEeccee-EEEEEecCcceeeee
Q psy10905 105 KLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWG-CIVVAEKDSLRPITV 161 (219)
Q Consensus 105 kl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG-~iiVaea~tLrPit~ 161 (219)
. .|++|.+..+-=||-|+-| -|...|+-++-+|--
T Consensus 185 s----------------------~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 185 S----------------------PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred C----------------------CCcceeeccCCCEEEEecCceeEEeccccccceee
Confidence 3 4667888776666666654 567778888876643
No 98
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=37.17 E-value=41 Score=21.17 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=17.6
Q ss_pred ceEEEecceeEEEEEecCcce
Q psy10905 137 TCLYIGTTWGCIVVAEKDSLR 157 (219)
Q Consensus 137 ~~LYIGTtwG~iiVaea~tLr 157 (219)
+.+|+||..|.|.-+|+.|=.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~ 21 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGK 21 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTS
T ss_pred CEEEEeCCCCEEEEEECCCCC
Confidence 468999999999999987643
No 99
>KOG0310|consensus
Probab=37.01 E-value=4.6e+02 Score=26.51 Aligned_cols=124 Identities=16% Similarity=0.120 Sum_probs=73.8
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeecc
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCS 104 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~s 104 (219)
+=|=||..+|-+.||+++.-+ ....++--+.| +.+++.. ....-+.+.-.-+-++.-||..+..+ -+|.+
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~--iLR~~~ah~ap---v~~~~f~---~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~ 150 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRV--ILRQLYAHQAP---VHVTKFS---PQDNTMLVSGSDDKVVKYWDLSTAYV--QAELS 150 (487)
T ss_pred eEEEccCCcCcEEEeccccHH--HHHHHhhccCc---eeEEEec---ccCCeEEEecCCCceEEEEEcCCcEE--EEEec
Confidence 557789999999999877511 11111111111 2344444 23444556666678899999999986 33333
Q ss_pred ccccCCCCcccccccccccccCceeeeEeeec---ceEEEecceeEEEEEecCcceeeeeecccccceeEEeeecC
Q psy10905 105 KLVPCSESLQSICIEEPLRQDQCHVTSVCILD---TCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPLGG 177 (219)
Q Consensus 105 kl~PcSEsl~si~iee~l~~~~~qVtaL~~~~---~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~l~g 177 (219)
. ..=+|-+.++.. .-+.=|--=|-|=.=|+-++-+-.+=--|+..|-.+++|++
T Consensus 151 ~-------------------htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 151 G-------------------HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPS 207 (487)
T ss_pred C-------------------CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCC
Confidence 2 222344444432 13444555566666677666566666678999999999984
No 100
>KOG0291|consensus
Probab=36.08 E-value=5.9e+02 Score=27.51 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=90.6
Q ss_pred ceEEEeeCCCceeeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEe
Q psy10905 5 SFVLTELGASSVLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVY 82 (219)
Q Consensus 5 ~f~ltelg~~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~ 82 (219)
+|+|--=|-...+.|++.=+ --+=+|..||.|.||+... .+.....-.| -.++.+.+.. +....+.|+ .
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteH----ts~Vt~v~f~---~~g~~llss-S 411 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEH----TSGVTAVQFT---ARGNVLLSS-S 411 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccC----CCceEEEEEE---ecCCEEEEe-e
Confidence 45655555444466666665 4677899999999996653 5555555555 3445566665 344445544 4
Q ss_pred CCcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee--cceEEEecce-eEEEEEecCcceee
Q psy10905 83 PGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL--DTCLYIGTTW-GCIVVAEKDSLRPI 159 (219)
Q Consensus 83 pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~--~~~LYIGTtw-G~iiVaea~tLrPi 159 (219)
-+=.|.-||..--+.--.+- .++.-|-+++++. ++-+.+|+-= =.|-|-.-.|=+-+
T Consensus 412 LDGtVRAwDlkRYrNfRTft--------------------~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFT--------------------SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred cCCeEEeeeecccceeeeec--------------------CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 45568999986655433332 2467788889987 5555555432 23455556677889
Q ss_pred eeecccccceeEEe
Q psy10905 160 TVFRPYEELVTAIL 173 (219)
Q Consensus 160 t~frp~e~~V~~Ii 173 (219)
-++..||++|..+.
T Consensus 472 DiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 472 DILSGHEGPVSGLS 485 (893)
T ss_pred ehhcCCCCcceeeE
Confidence 99999999999743
No 101
>KOG0286|consensus
Probab=35.67 E-value=4.1e+02 Score=25.60 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=42.9
Q ss_pred ccCceeeeEee--ecceEEEecceeEEEEEecCcceeeeeecccccceeEEee
Q psy10905 124 QDQCHVTSVCI--LDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILP 174 (219)
Q Consensus 124 ~~~~qVtaL~~--~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~ 174 (219)
...|-||+++. ++..||.|-.=.-+-|=|...=+-..++..||+.|.++=.
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV 323 (343)
T ss_pred cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence 46777888776 5689999988888889998888899999999999998743
No 102
>KOG3881|consensus
Probab=35.67 E-value=86 Score=30.80 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=49.0
Q ss_pred eeeeeeeec--ceeeecccCCcEEEEEccCCceEee----------eeeeccCCccccceeEEEeecCCCCceEEEEEeC
Q psy10905 16 VLHAITAVP--GELWCGESDGNISIYTMSEHSVTSH----------DTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYP 83 (219)
Q Consensus 16 ~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~----------~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~p 83 (219)
+|.+++.++ ..|-+|-..|.+..|+++...+-+. ...+|+.-|. ++ .+--
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~-------la-----------s~GL 310 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPV-------LA-----------SCGL 310 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCce-------EE-----------eecc
Confidence 366777777 8899999999999999997655432 3445544211 23 2233
Q ss_pred CcEEEEEecccceeeeeeeccc
Q psy10905 84 GCSVYQWDTQARSIVNKLDCSK 105 (219)
Q Consensus 84 g~~Vyqw~~~tr~I~~~LD~sk 105 (219)
+=.|.-+|++||+.+.+.=|.-
T Consensus 311 DRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 311 DRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred ceeEEEeecccchhhhhhhhhc
Confidence 4467889999999887665543
No 103
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=35.63 E-value=71 Score=21.36 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=21.7
Q ss_pred eeeEeeecceEEEecceeEEEEEecCc
Q psy10905 129 VTSVCILDTCLYIGTTWGCIVVAEKDS 155 (219)
Q Consensus 129 VtaL~~~~~~LYIGTtwG~iiVaea~t 155 (219)
...+++.++++||+...+=|.|+|-+-
T Consensus 4 a~~v~v~g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEEECCEEEEEeCCCCEEEEECCC
Confidence 467899999999997777777888544
No 104
>KOG0265|consensus
Probab=35.36 E-value=4.2e+02 Score=25.56 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=96.4
Q ss_pred eEEEeeCCCceeeeeeeec--ceeeecccCCcEEEEEccCC--ceEeeeeeeccCCccccceeEEEeecCCCCceEEEEE
Q psy10905 6 FVLTELGASSVLHAITAVP--GELWCGESDGNISIYTMSEH--SVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYV 81 (219)
Q Consensus 6 f~ltelg~~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~--~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv 81 (219)
|.|.=.|...+|+++.+-+ .=+=.|+.|-+|-.|....+ |+.-.. -|.. -|+.+- .-++.+++.| .
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--gHsg------AVM~l~-~~~d~s~i~S-~ 108 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--GHSG------AVMELH-GMRDGSHILS-C 108 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec--cccc------eeEeee-eccCCCEEEE-e
Confidence 4455566677777777777 44556778888888854422 322111 2322 244432 1135555554 5
Q ss_pred eCCcEEEEEecccceee----------eeeecccccc---CCCCc----cccccc--c--cccccCceeeeEeeec--ce
Q psy10905 82 YPGCSVYQWDTQARSIV----------NKLDCSKLVP---CSESL----QSICIE--E--PLRQDQCHVTSVCILD--TC 138 (219)
Q Consensus 82 ~pg~~Vyqw~~~tr~I~----------~~LD~skl~P---cSEsl----~si~ie--e--~l~~~~~qVtaL~~~~--~~ 138 (219)
-++-.|+-||++|+|-. |.+|-++.=| ||-|. +=-||+ + ++-..+-|+||++.-+ +|
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccc
Confidence 78889999999998754 4445444222 44332 222233 1 1223588999999966 89
Q ss_pred EEEecceeEEEEEecCcceeeeeecccccceeEEeee
Q psy10905 139 LYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPL 175 (219)
Q Consensus 139 LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~l 175 (219)
...|--=+.|=|=|.-.=--+-+.+.|...|+.|--.
T Consensus 189 v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls 225 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS 225 (338)
T ss_pred eeeccccCceeeeccccCcceEEeecccCceeeEEec
Confidence 9999888877777654334556677777777766533
No 105
>KOG0288|consensus
Probab=34.80 E-value=2.7e+02 Score=27.76 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=41.7
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceE-eeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCc---EEEEE
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVT-SHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGC---SVYQW 90 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs-~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~---~Vyqw 90 (219)
+.|+.... +||=.-..|+.+++++++...+. .+.+.+-... + .++..+-+|.+ +||--|+ .||.|
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a-s---DwtrvvfSpd~-----~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA-S---DWTRVVFSPDG-----SYVAAGSADGSVYIW 414 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc-c---ccceeEECCCC-----ceeeeccCCCcEEEE
Confidence 34444433 66665567777777777765444 2222222111 1 12222212211 2455554 69999
Q ss_pred ecccceeeeeeec
Q psy10905 91 DTQARSIVNKLDC 103 (219)
Q Consensus 91 ~~~tr~I~~~LD~ 103 (219)
++.|+|++-+|--
T Consensus 415 ~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 415 SVFTGKLEKVLSL 427 (459)
T ss_pred EccCceEEEEecc
Confidence 9999999887743
No 106
>KOG4283|consensus
Probab=34.26 E-value=1.4e+02 Score=28.83 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=44.0
Q ss_pred ceeeecccCCcEEEEEccCC--ceEeeeeeeccCCccccceeEEEee-----cCCCCceEEEEEeCCcEEEEEeccccee
Q psy10905 25 GELWCGESDGNISIYTMSEH--SVTSHDTVNHFHPVISNVDVSFLVS-----SPSTSAWVWSYVYPGCSVYQWDTQARSI 97 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~--~vs~~~~l~h~~~~~~~~~V~~L~~-----~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I 97 (219)
.+||.-..|++|.+|.+..+ .+..+--++|-..+-+++.+..|.+ -+.++.----.++-|++|.+|+..-|.|
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i 338 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRI 338 (397)
T ss_pred hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeeccccee
Confidence 89998889999999977644 2333444444333333444443331 0111111223467799999999986655
Q ss_pred eee
Q psy10905 98 VNK 100 (219)
Q Consensus 98 ~~~ 100 (219)
.+.
T Consensus 339 ~c~ 341 (397)
T KOG4283|consen 339 NCA 341 (397)
T ss_pred eEE
Confidence 443
No 107
>KOG0294|consensus
Probab=34.03 E-value=2.2e+02 Score=27.61 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=52.7
Q ss_pred eeCCCceeeeeeeec-ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccce------eEEEeecCCCCceEEEEEe
Q psy10905 10 ELGASSVLHAITAVP-GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVD------VSFLVSSPSTSAWVWSYVY 82 (219)
Q Consensus 10 elg~~~~i~s~a~v~-~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~------V~~L~~~~~~~~~Vwsyv~ 82 (219)
|+--|.++.|+...+ -+|=+|..++.|+.++-++ .+.-++.+-|..- +..+. =.+|++++++
T Consensus 204 ~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~R-VK~i~~~~~~~~~~lvTaSSD--------- 272 (362)
T KOG0294|consen 204 EIENPKRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENR-VKDIASYTNPEHEYLVTASSD--------- 272 (362)
T ss_pred hhhccccceeeeecCCceEEEecCCceEEEeccCC-Cccceeeecchhh-eeeeEEEecCCceEEEEeccC---------
Confidence 344455577777777 9999999999999995443 4446667777553 11111 1345554444
Q ss_pred CCcEEEEEecccc-----eeeeeeecc
Q psy10905 83 PGCSVYQWDTQAR-----SIVNKLDCS 104 (219)
Q Consensus 83 pg~~Vyqw~~~tr-----~I~~~LD~s 104 (219)
=+|..||.+.. ..++.+|+-
T Consensus 273 --G~I~vWd~~~~~k~~~~~l~e~n~~ 297 (362)
T KOG0294|consen 273 --GFIKVWDIDMETKKRPTLLAELNTN 297 (362)
T ss_pred --ceEEEEEccccccCCcceeEEeecC
Confidence 36788988877 566666663
No 108
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=32.37 E-value=3.4e+02 Score=23.69 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=41.8
Q ss_pred ceeeec-ccCCcEEEEEccC-CceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccc
Q psy10905 25 GELWCG-ESDGNISIYTMSE-HSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 25 ~eLW~G-~~~g~Isi~~l~~-~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~t 94 (219)
..|.+| +.++.|++|++++ +.++.......+. ...+++..+ +...++++-+.+-.|..||.++
T Consensus 47 ~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~------~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 47 RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG------SPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CEEEEEECCCCcEEEEEECCCCceEEeeeecCCC------CceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 667765 5689999999973 3455433333322 234666433 5567898888888888898864
No 109
>KOG4714|consensus
Probab=32.34 E-value=76 Score=30.03 Aligned_cols=119 Identities=19% Similarity=0.371 Sum_probs=73.9
Q ss_pred ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCC-CceEEEEEeCCcEEEEEecccceeeeeeec
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPST-SAWVWSYVYPGCSVYQWDTQARSIVNKLDC 103 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~-~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~ 103 (219)
..+=||+.||...|++-+. ...+.| +.++.++..+... -.++=+-+.|||- -|+...-...+.+|-
T Consensus 102 t~V~~~~~dg~~~v~s~~~-----~~~~~~------~i~~~~~~~as~~~~~~~~~i~s~~~g--~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDK-----DLALMS------RIPSIHSGSASRKICRHGNSILSGGCG--NWNAQDNFYANTLDP 168 (319)
T ss_pred CceEecCCCceEEEEechH-----HHhhhh------hcccccccccccceeecccEEecCCcc--eEeeccceeeecccc
Confidence 7888999999999995543 122222 3345555421100 0123333444443 488888888889998
Q ss_pred cc-cccCCCCcccccccccccccCceeeeEeee---cceEEEecceeEEEEEecCcc-eeeeeecccccce
Q psy10905 104 SK-LVPCSESLQSICIEEPLRQDQCHVTSVCIL---DTCLYIGTTWGCIVVAEKDSL-RPITVFRPYEELV 169 (219)
Q Consensus 104 sk-l~PcSEsl~si~iee~l~~~~~qVtaL~~~---~~~LYIGTtwG~iiVaea~tL-rPit~frp~e~~V 169 (219)
-| ++|++..++ . |+|||.. ..++-.||--|-+-+-|+-.+ -|.+.+.-|+.++
T Consensus 169 ~~t~~~~~~~~~------------~-v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i 226 (319)
T KOG4714|consen 169 IKTLIPSKKALD------------A-VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI 226 (319)
T ss_pred cccccccccccc------------c-chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence 88 666664422 1 8888874 478899999999988886555 4555555555443
No 110
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=32.29 E-value=58 Score=20.29 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.4
Q ss_pred eeeeEeeecceEEEecceeEE
Q psy10905 128 HVTSVCILDTCLYIGTTWGCI 148 (219)
Q Consensus 128 qVtaL~~~~~~LYIGTtwG~i 148 (219)
.|+|+++-++...++|+.+-|
T Consensus 3 ~i~aia~g~~~vavaTS~~~l 23 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYL 23 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeE
Confidence 478999999999999998865
No 111
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=30.61 E-value=29 Score=22.79 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=8.3
Q ss_pred CCcEEEEEec
Q psy10905 83 PGCSVYQWDT 92 (219)
Q Consensus 83 pg~~Vyqw~~ 92 (219)
.+|.||+||.
T Consensus 35 ~~s~Iy~Wd~ 44 (44)
T PF03736_consen 35 GDSQIYRWDG 44 (44)
T ss_pred CCCEEEEeCC
Confidence 4899999983
No 112
>KOG0649|consensus
Probab=30.57 E-value=4.8e+02 Score=24.80 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=59.5
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCC-ceEeeeeeeccCCccc--cceeEEEeecCCCCceEEEEEeCCcEEEEEe
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEH-SVTSHDTVNHFHPVIS--NVDVSFLVSSPSTSAWVWSYVYPGCSVYQWD 91 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~-~vs~~~~l~h~~~~~~--~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~ 91 (219)
+||.+-=+ -|+-.|..||..-||+.+.. .++--+.-.|++---| +-=+..|+ .++ =|-..--|...-.|+
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala---~~e--dWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA---VNE--DWLVCGGGPKLSLWH 233 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe---ccC--ceEEecCCCceeEEe
Confidence 67766544 89999999999999999955 5555555555443111 22356666 344 488888999999997
Q ss_pred cccceeeeeeeccccccCCCCccccccccc
Q psy10905 92 TQARSIVNKLDCSKLVPCSESLQSICIEEP 121 (219)
Q Consensus 92 ~~tr~I~~~LD~skl~PcSEsl~si~iee~ 121 (219)
+|.||+-..+.|..|
T Consensus 234 ---------------Lrsse~t~vfpipa~ 248 (325)
T KOG0649|consen 234 ---------------LRSSESTCVFPIPAR 248 (325)
T ss_pred ---------------ccCCCceEEEecccc
Confidence 477787777777643
No 113
>PTZ00420 coronin; Provisional
Probab=30.54 E-value=5.8e+02 Score=25.79 Aligned_cols=76 Identities=14% Similarity=0.119 Sum_probs=46.9
Q ss_pred eeeeeeec---ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecc
Q psy10905 17 LHAITAVP---GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQ 93 (219)
Q Consensus 17 i~s~a~v~---~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~ 93 (219)
+.+++.-+ .-|-+|..||.|.||+++...... .+.|.+ .|..+.-.+ ++. .......+-.|+.||..
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~--~i~~~~------~V~Slswsp-dG~-lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF--QINMPK------KLSSLKWNI-KGN-LLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE--EEecCC------cEEEEEECC-CCC-EEEEEecCCEEEEEECC
Confidence 45555444 234567789999999999765332 233432 245554322 222 33444567789999999
Q ss_pred cceeeeeee
Q psy10905 94 ARSIVNKLD 102 (219)
Q Consensus 94 tr~I~~~LD 102 (219)
++++..++.
T Consensus 198 sg~~i~tl~ 206 (568)
T PTZ00420 198 KQEIASSFH 206 (568)
T ss_pred CCcEEEEEe
Confidence 999877664
No 114
>KOG2444|consensus
Probab=29.44 E-value=66 Score=29.45 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=43.1
Q ss_pred eeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccc
Q psy10905 26 ELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 26 eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~t 94 (219)
=.|||..+|+|.-+.++-+.+.+...=.-++| +..+++.++++--+.+-+.+++.+..|+++.
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~------~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFES------GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCC------cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 68999999999999888766554332211133 4445444455555667788999999999864
No 115
>KOG0321|consensus
Probab=29.26 E-value=3.9e+02 Score=28.13 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=70.0
Q ss_pred ceeeecccCCcEEEEEccCCceEe--e-----eeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccccee
Q psy10905 25 GELWCGESDGNISIYTMSEHSVTS--H-----DTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSI 97 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~vs~--~-----~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I 97 (219)
.=.=||.-|+.|.||||+...-.. . ...+| . -..+-++.|.-- +.+...+...- +..||.|+..+-.+
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~--s-krs~G~~nL~lD-ssGt~L~AsCt-D~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH--S-KRSVGQVNLILD-SSGTYLFASCT-DNSIYFYNMRSLSI 305 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCc--c-cceeeeEEEEec-CCCCeEEEEec-CCcEEEEeccccCc
Confidence 445578889999999999542211 1 11111 1 114455566521 12244666665 77899999887655
Q ss_pred eeeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcc-eeeeeecccccceeEEeeec
Q psy10905 98 VNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSL-RPITVFRPYEELVTAILPLG 176 (219)
Q Consensus 98 ~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tL-rPit~frp~e~~V~~Ii~l~ 176 (219)
.-.--.+..+=.+=-.+++ +++..|.+.+=.. +.+.|| =.-.++ .|.+++-.|.-+|+++..++
T Consensus 306 sP~~~~sg~~~~sf~vks~-----lSpd~~~l~SgSs-d~~ayi---------w~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 306 SPVAEFSGKLNSSFYVKSE-----LSPDDCSLLSGSS-DEQAYI---------WVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred CchhhccCcccceeeeeee-----cCCCCceEeccCC-Ccceee---------eeecCccCChhhhhCcceEEEEEeecc
Confidence 4333222222111111111 3445555444222 244443 222222 57788888999999988886
No 116
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=29.05 E-value=5.2e+02 Score=24.72 Aligned_cols=142 Identities=16% Similarity=0.240 Sum_probs=75.0
Q ss_pred eeeeecceeeecccCCcEEEEEccCCceEe-ee----------------------eeeccCC-------------ccccc
Q psy10905 19 AITAVPGELWCGESDGNISIYTMSEHSVTS-HD----------------------TVNHFHP-------------VISNV 62 (219)
Q Consensus 19 s~a~v~~eLW~G~~~g~Isi~~l~~~~vs~-~~----------------------~l~h~~~-------------~~~~~ 62 (219)
++|.-..||=+|-..|.+-||....++.-+ .. .+.|--+ .+.+.
T Consensus 8 s~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g 87 (395)
T PF08596_consen 8 SFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG 87 (395)
T ss_dssp EEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred EecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence 444445788888888999888666432222 11 1111101 02356
Q ss_pred eeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeee-------
Q psy10905 63 DVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCIL------- 135 (219)
Q Consensus 63 ~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~------- 135 (219)
+|+.+.. ++--+|=..-+-| .+..-|-..-.|+.+=.+++. -+. ....|.||+|.-.
T Consensus 88 ~vtal~~--S~iGFvaigy~~G-~l~viD~RGPavI~~~~i~~~----------~~~---~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 88 PVTALKN--SDIGFVAIGYESG-SLVVIDLRGPAVIYNENIRES----------FLS---KSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp SEEEEEE---BTSEEEEEETTS-EEEEEETTTTEEEEEEEGGG------------T----SS----EEEEEEEEEE-TTS
T ss_pred cEeEEec--CCCcEEEEEecCC-cEEEEECCCCeEEeecccccc----------ccc---cccccCeeEEEEEEEecCCC
Confidence 6777763 2333455555555 566677777777777666650 011 2467778887541
Q ss_pred ---cceEEEecceeEEEEEe-------cCcceeeeeecccccceeEEeeec
Q psy10905 136 ---DTCLYIGTTWGCIVVAE-------KDSLRPITVFRPYEELVTAILPLG 176 (219)
Q Consensus 136 ---~~~LYIGTtwG~iiVae-------a~tLrPit~frp~e~~V~~Ii~l~ 176 (219)
.=.|++||..|-+++.. ..+-.+..+..-+.+.|..|.|++
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~ 202 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPIN 202 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEE
T ss_pred cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEE
Confidence 14799999999999874 344566667777889999999996
No 117
>KOG2106|consensus
Probab=28.52 E-value=4.8e+02 Score=26.94 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=62.8
Q ss_pred CcEEEEEecccceeeeeeeccccccCCCCcccccccccccccCceeeeEeeec-ceEEEecceeEEEEEecCcceeeeee
Q psy10905 84 GCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD-TCLYIGTTWGCIVVAEKDSLRPITVF 162 (219)
Q Consensus 84 g~~Vyqw~~~tr~I~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~-~~LYIGTtwG~iiVaea~tLrPit~f 162 (219)
-.-+|-|+-++.-..-|-++-+ ..++-.|.+|+..+ ++.--|-+-|-|.|-+..+-|=--.-
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fe-----------------k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFE-----------------KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred CceEEEEEccCCceEEEeeccc-----------------cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEe
Confidence 3567888888777777766543 45779999999987 89999999999999998887654444
Q ss_pred cccccceeEEeeec-CeEEE
Q psy10905 163 RPYEELVTAILPLG-GDIVT 181 (219)
Q Consensus 163 rp~e~~V~~Ii~l~-g~l~T 181 (219)
.-|++-|=+.+-+. |.|++
T Consensus 284 ~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred eecCCceEEEEEecCccEee
Confidence 49999999998885 54444
No 118
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=26.95 E-value=2.6e+02 Score=29.10 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=67.0
Q ss_pred eeeeecceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCc-eEEEEEeCCcEEEEEeccccee
Q psy10905 19 AITAVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSA-WVWSYVYPGCSVYQWDTQARSI 97 (219)
Q Consensus 19 s~a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~-~Vwsyv~pg~~Vyqw~~~tr~I 97 (219)
..+.++-+||.|-. .-+.+++... ....+.. ++.|+..|..++ +|.+ +.|.....|=..| |.-
T Consensus 211 l~~d~qg~LWVGTd-qGv~~~e~~G-----~~~sn~~-~~lp~~~I~ll~---qD~qG~lWiGTenGl~r~------~l~ 274 (671)
T COG3292 211 LIADVQGRLWVGTD-QGVYLQEAEG-----WRASNWG-PMLPSGNILLLV---QDAQGELWIGTENGLWRT------RLP 274 (671)
T ss_pred HHHHhcCcEEEEec-cceEEEchhh-----ccccccC-CCCcchheeeee---cccCCCEEEeecccceeE------ecC
Confidence 33444489999954 5588885544 2222322 357778888888 4544 6899888875443 222
Q ss_pred eeeeeccccccCCCCcccccccccccccCceeeeEeeec-ceEEEecceeEEEEEecCcce
Q psy10905 98 VNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILD-TCLYIGTTWGCIVVAEKDSLR 157 (219)
Q Consensus 98 ~~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~-~~LYIGTtwG~iiVaea~tLr 157 (219)
..-|++- -+ .+ ......|++|.... ++|||||.-|.+=+..+.-++
T Consensus 275 rq~Lq~~----~~--------~~--~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ 321 (671)
T COG3292 275 RQGLQIP----LS--------KM--HLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKR 321 (671)
T ss_pred CCCcccc----cc--------cc--CCccccccceeeccCCCEeeeccCceEEEecchhhh
Confidence 2333332 11 11 24555667777754 899999999988777765443
No 119
>KOG0279|consensus
Probab=26.77 E-value=4.2e+02 Score=25.27 Aligned_cols=44 Identities=25% Similarity=0.574 Sum_probs=33.0
Q ss_pred CCCceEEEeeCCCceeeeeeeecceee-ecccCCcEEEEEccCCce
Q psy10905 2 AEGSFVLTELGASSVLHAITAVPGELW-CGESDGNISIYTMSEHSV 46 (219)
Q Consensus 2 ~e~~f~ltelg~~~~i~s~a~v~~eLW-~G~~~g~Isi~~l~~~~v 46 (219)
+||. .+-.|+...+|+++|+-+++.| |--.+-+|.||++....+
T Consensus 222 ~~~k-~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 222 NEGK-NLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred cCCc-eeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 4554 5677888888999999998888 334556799998875533
No 120
>KOG0313|consensus
Probab=25.31 E-value=3.2e+02 Score=27.06 Aligned_cols=80 Identities=26% Similarity=0.296 Sum_probs=52.9
Q ss_pred eeCCCceeeeeeeec--ceeeecccCCcEEEEEccCC--ceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCc
Q psy10905 10 ELGASSVLHAITAVP--GELWCGESDGNISIYTMSEH--SVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGC 85 (219)
Q Consensus 10 elg~~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~--~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~ 85 (219)
++-.+..+.|..... .-|=||.++--|.+|+.++. .+..+..+.|-.= |.-+-..+ ....-+.....+-
T Consensus 296 ~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw------Vssvkwsp-~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 296 TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW------VSSVKWSP-TNEFQLVSGSYDN 368 (423)
T ss_pred eeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh------hhheecCC-CCceEEEEEecCC
Confidence 333344455555554 77889999999999999944 6668888888441 22222123 3334666777888
Q ss_pred EEEEEecccce
Q psy10905 86 SVYQWDTQARS 96 (219)
Q Consensus 86 ~Vyqw~~~tr~ 96 (219)
++.+||+.+-+
T Consensus 369 t~klWDvRS~k 379 (423)
T KOG0313|consen 369 TVKLWDVRSTK 379 (423)
T ss_pred eEEEEEeccCC
Confidence 99999988754
No 121
>KOG0272|consensus
Probab=25.22 E-value=3.2e+02 Score=27.30 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=44.2
Q ss_pred Cceeeeeeeec--ceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEe
Q psy10905 14 SSVLHAITAVP--GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWD 91 (219)
Q Consensus 14 ~~~i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~ 91 (219)
..+|++++.=+ ++|=+|..|+.+.||+|+--.. -....-|.+- |++..-.+... ..-.--.-++.+..|.
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nl------VS~Vk~~p~~g-~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNL------VSQVKYSPQEG-YFLVTASYDNTVKIWS 416 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceecccccch------hhheEecccCC-eEEEEcccCcceeeec
Confidence 34567777766 9999999999999999984322 1111112221 12221111111 1111223467899999
Q ss_pred cccceeee
Q psy10905 92 TQARSIVN 99 (219)
Q Consensus 92 ~~tr~I~~ 99 (219)
+.+.+...
T Consensus 417 ~~~~~~~k 424 (459)
T KOG0272|consen 417 TRTWSPLK 424 (459)
T ss_pred CCCcccch
Confidence 99988653
No 122
>PF06350 HSL_N: Hormone-sensitive lipase (HSL) N-terminus; InterPro: IPR010468 This domain is found in several mammalian hormone-sensitive lipase (HSL) proteins. Hormone-sensitive lipase, a key enzyme in fatty acid mobilisation, overall energy homeostasis, and possibly steroidogenesis, is acutely controlled via reversible phosphorylation by catecholamines and insulin [].; GO: 0016298 lipase activity, 0008203 cholesterol metabolic process, 0016042 lipid catabolic process
Probab=25.05 E-value=23 Score=33.30 Aligned_cols=13 Identities=62% Similarity=0.795 Sum_probs=10.5
Q ss_pred EEEecccccccee
Q psy10905 179 IVTIGRGYRSLVS 191 (219)
Q Consensus 179 l~TiG~GyR~L~~ 191 (219)
-=|=|||||||+.
T Consensus 64 ~~tPgNGYRSlv~ 76 (313)
T PF06350_consen 64 EETPGNGYRSLVK 76 (313)
T ss_pred CCCCCCchhhHHH
Confidence 4567999999973
No 123
>KOG1310|consensus
Probab=24.91 E-value=1.1e+02 Score=31.79 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=50.6
Q ss_pred ceeeeeeeec----ceeeecccCCcEEEEEccC-------CceE--eeeeeeccCCccccceeEEEeecCCCCceEEEEE
Q psy10905 15 SVLHAITAVP----GELWCGESDGNISIYTMSE-------HSVT--SHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYV 81 (219)
Q Consensus 15 ~~i~s~a~v~----~eLW~G~~~g~Isi~~l~~-------~~vs--~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv 81 (219)
..|+|.-+|+ ..+=.|--|.-|.+|+++. ++.. .+-.-||.+- |-.+++++..-.-+||+-
T Consensus 94 aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~r------VKria~~p~~Phtfwsas 167 (758)
T KOG1310|consen 94 ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDR------VKRIATAPNGPHTFWSAS 167 (758)
T ss_pred cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhh------hhheecCCCCCceEEEec
Confidence 3489999998 7888999999999999883 2222 3333455443 677887775556799999
Q ss_pred eCCcEEEEEec
Q psy10905 82 YPGCSVYQWDT 92 (219)
Q Consensus 82 ~pg~~Vyqw~~ 92 (219)
+-|+. .|+|-
T Consensus 168 EDGti-rQyDi 177 (758)
T KOG1310|consen 168 EDGTI-RQYDI 177 (758)
T ss_pred CCcce-eeecc
Confidence 98874 56654
No 124
>KOG0307|consensus
Probab=24.33 E-value=84 Score=34.25 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=18.3
Q ss_pred EeCCcEEEEEecccceeeeeeec
Q psy10905 81 VYPGCSVYQWDTQARSIVNKLDC 103 (219)
Q Consensus 81 v~pg~~Vyqw~~~tr~I~~~LD~ 103 (219)
.-++-.|+-|+.+|++|+.+|--
T Consensus 272 sgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 272 SGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ccCCCCeeEecCCCceEeeecCC
Confidence 34566889999999999998754
No 125
>PF04491 Pox_T4_N: Poxvirus T4 protein, N terminus; InterPro: IPR007580 Poxvirus T4 protein is thought to be secreted or retained in the endoplasmic reticulum if the protein also contains an additional C-terminal region (IPR007579 from INTERPRO). M-T4 of myxoma virus (O55698 from SWISSPROT) is thought to protect infected lymphocytes from apoptosis and modulate the inflammatory response to virus infection [].
Probab=24.29 E-value=47 Score=23.34 Aligned_cols=15 Identities=27% Similarity=0.751 Sum_probs=12.5
Q ss_pred CeEEEecccccccee
Q psy10905 177 GDIVTIGRGYRSLVS 191 (219)
Q Consensus 177 g~l~TiG~GyR~L~~ 191 (219)
|.|+|=|||||-..+
T Consensus 29 GGLItegNGfki~~h 43 (46)
T PF04491_consen 29 GGLITEGNGFKIFAH 43 (46)
T ss_pred CcEEeeCCcEEEEEe
Confidence 469999999998754
No 126
>KOG1332|consensus
Probab=24.00 E-value=1.4e+02 Score=28.21 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.1
Q ss_pred ceeeecccCCcEEEEEccCCce
Q psy10905 25 GELWCGESDGNISIYTMSEHSV 46 (219)
Q Consensus 25 ~eLW~G~~~g~Isi~~l~~~~v 46 (219)
.-|=||-+||.|+|++.++++.
T Consensus 117 l~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 117 LLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred eEEEEeeCCCcEEEEEEcCCCC
Confidence 6788999999999999997743
No 127
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=23.45 E-value=7.2e+02 Score=24.48 Aligned_cols=121 Identities=10% Similarity=0.033 Sum_probs=71.9
Q ss_pred eeecceeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecC--CCCceEEEEEeCCcEEEEEecccceee
Q psy10905 21 TAVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSP--STSAWVWSYVYPGCSVYQWDTQARSIV 98 (219)
Q Consensus 21 a~v~~eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~--~~~~~Vwsyv~pg~~Vyqw~~~tr~I~ 98 (219)
++++..|..+..+|+|.-++.+++.+-+.....-+.... ......++..+ -....|+... .+..||-.|.+|++++
T Consensus 66 vv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~-~~~~~~~~~rg~av~~~~v~v~t-~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 66 LVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVI-PVMCCDVVNRGVALYDGKVFFGT-LDARLVALDAKTGKVV 143 (527)
T ss_pred EEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccc-cccccccccccceEECCEEEEEc-CCCEEEEEECCCCCEE
Confidence 344588899888899999988888888776553222100 00000000000 1223455433 4568999999999999
Q ss_pred eeeeccccccCCCCcccccccccccccCceeeeEeeecceEEEecc------eeEEEEEecCcceee
Q psy10905 99 NKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTT------WGCIVVAEKDSLRPI 159 (219)
Q Consensus 99 ~~LD~skl~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTt------wG~iiVaea~tLrPi 159 (219)
=+.+..++-. ...-.++-.+.++.+|||++ -|.|.-+|+.|=+.+
T Consensus 144 W~~~~~~~~~----------------~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 144 WSKKNGDYKA----------------GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred eecccccccc----------------cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 8876643111 11112345566899999986 578888887664433
No 128
>KOG0273|consensus
Probab=23.36 E-value=5e+02 Score=26.39 Aligned_cols=111 Identities=19% Similarity=0.356 Sum_probs=0.0
Q ss_pred ecccCCcEEEEEccCCceEeeeeeeccCCccc---cceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeeeeccc
Q psy10905 29 CGESDGNISIYTMSEHSVTSHDTVNHFHPVIS---NVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLDCSK 105 (219)
Q Consensus 29 ~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~---~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD~sk 105 (219)
+|-.+|.+-||+...+-.+... +|--|..+ +..=+|+++++.+. ....||+-|+....-+-.-.
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~--~HkgPI~slKWnk~G~yilS~~vD~-----------ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLG--QHKGPIFSLKWNKKGTYILSGGVDG-----------TTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred EeecCcEEEEEecCchhhhhhh--ccCCceEEEEEcCCCCEEEeccCCc-----------cEEEEeccCceEEEeeeecc
Q ss_pred cccCCCCcccccccccccccCceeeeEeeecceEEEecceeEEEEEecCcceeeeeecccccceeEE
Q psy10905 106 LVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAI 172 (219)
Q Consensus 106 l~PcSEsl~si~iee~l~~~~~qVtaL~~~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~I 172 (219)
-. .+|+|= ..++..-+--+-|||-|..-..=||+..|..|.++|-+|
T Consensus 319 ~~-------~lDVdW-------------~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 319 AP-------ALDVDW-------------QSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred CC-------ccceEE-------------ecCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
No 129
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.08 E-value=3e+02 Score=23.89 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=24.0
Q ss_pred ceeEEEeecCCCCceEEEEEeCCcEEEEEecccceeeeee
Q psy10905 62 VDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKL 101 (219)
Q Consensus 62 ~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~L 101 (219)
-++..|. ..+.+ -.++--...+|.||..+++..-+-
T Consensus 13 s~~~~l~---~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~ 48 (219)
T PF07569_consen 13 SPVSFLE---CNGSY-LLAITSSGLLYVWNLKKGKAVLPP 48 (219)
T ss_pred CceEEEE---eCCCE-EEEEeCCCeEEEEECCCCeeccCC
Confidence 3555665 34444 455566678999999999875544
No 130
>KOG1034|consensus
Probab=22.91 E-value=2.3e+02 Score=27.60 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=39.3
Q ss_pred ecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccc
Q psy10905 29 CGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94 (219)
Q Consensus 29 ~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~t 94 (219)
+|...|.+++|+|+++.---...+.|.. .+..|+|-+. +-..-+-.++--.-.|..||..+
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~---~~~tVRQ~sf--S~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSK---SGSTVRQTSF--SRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEecc---ccceeeeeee--cccCcEEEEEeCCCcEEEEEeec
Confidence 7889999999999954322344444432 2556776653 12223667777788888888654
No 131
>KOG1407|consensus
Probab=22.50 E-value=6.8e+02 Score=23.86 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=92.1
Q ss_pred eeeeeeec--ceeeecccCCcEEEEEccCCceE-eeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEecc
Q psy10905 17 LHAITAVP--GELWCGESDGNISIYTMSEHSVT-SHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQ 93 (219)
Q Consensus 17 i~s~a~v~--~eLW~G~~~g~Isi~~l~~~~vs-~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~ 93 (219)
+++.|-.. +.|=+|-.++..+||.+.-+.+. ....=.|.++ |-||+-.++.. ..+...+-|=.|..||..
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~s------vdql~w~~~~~-d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDS------VDQLCWDPKHP-DLFATASGDKTIRIWDIR 95 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcc------hhhheeCCCCC-cceEEecCCceEEEEEec
Confidence 67777777 89999999999999988755332 2222233332 44444333222 245556667788999998
Q ss_pred cceeeeeeeccc---c---ccCCCC---------ccccccccc----ccccCceeeeEeee-cceEEEecce-eEEEEEe
Q psy10905 94 ARSIVNKLDCSK---L---VPCSES---------LQSICIEEP----LRQDQCHVTSVCIL-DTCLYIGTTW-GCIVVAE 152 (219)
Q Consensus 94 tr~I~~~LD~sk---l---~PcSEs---------l~si~iee~----l~~~~~qVtaL~~~-~~~LYIGTtw-G~iiVae 152 (219)
+.|-+.+..-++ . -|+-+- |..||+..+ --..++-|.-++-. .+-|+.=|+- |||=|+.
T Consensus 96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs 175 (313)
T KOG1407|consen 96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILS 175 (313)
T ss_pred cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEe
Confidence 888888777655 1 233332 333442221 01244555555443 3666766666 9999999
Q ss_pred cCcceeeeeecccccc
Q psy10905 153 KDSLRPITVFRPYEEL 168 (219)
Q Consensus 153 a~tLrPit~frp~e~~ 168 (219)
=-.|.|+.-..-|..+
T Consensus 176 ypsLkpv~si~AH~sn 191 (313)
T KOG1407|consen 176 YPSLKPVQSIKAHPSN 191 (313)
T ss_pred ccccccccccccCCcc
Confidence 9999999998888744
No 132
>KOG1063|consensus
Probab=21.38 E-value=9.1e+02 Score=25.76 Aligned_cols=74 Identities=19% Similarity=0.380 Sum_probs=50.1
Q ss_pred eeeecccCCcEEEEEccCCceEeeeeeeccCCccccceeEEEeecCCCCceEEEEEeCCcEEEEEeccccee----eeee
Q psy10905 26 ELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQARSI----VNKL 101 (219)
Q Consensus 26 eLW~G~~~g~Isi~~l~~~~vs~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I----~~~L 101 (219)
|+=.|.+||++-.|-|+.+.+.....+.+..- ++.++. +...+-....-.+.|+.||.+-+++ .-|+
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~-----~~~cv~----a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf 141 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK-----ECVCVV----ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRF 141 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcce-----eEEEEE----eeeeEEEeeccCceEEEeecCCCceeeehheeh
Confidence 57779999999999999777777666655222 344443 2222222346788999999976662 2367
Q ss_pred ecccccc
Q psy10905 102 DCSKLVP 108 (219)
Q Consensus 102 D~skl~P 108 (219)
++.+.+|
T Consensus 142 ~~k~~ip 148 (764)
T KOG1063|consen 142 EIKEAIP 148 (764)
T ss_pred hhhhHhh
Confidence 7778888
No 133
>KOG1539|consensus
Probab=21.16 E-value=1.1e+03 Score=25.73 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=89.7
Q ss_pred eeeeeeeecceeeecccCCcEEEEEccCC----ce-------E--eeeeeeccCCccccceeEEEeecCCCCceEEEEEe
Q psy10905 16 VLHAITAVPGELWCGESDGNISIYTMSEH----SV-------T--SHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVY 82 (219)
Q Consensus 16 ~i~s~a~v~~eLW~G~~~g~Isi~~l~~~----~v-------s--~~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~ 82 (219)
.++-+..+.-+|=++-.+|.|.||..... .+ + +-.++.||..-+-|+ +.+.+.+.-.---++
T Consensus 116 ~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKI-----vvGs~~G~lql~Nvr 190 (910)
T KOG1539|consen 116 KVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKI-----VVGSSQGRLQLWNVR 190 (910)
T ss_pred eEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeE-----EEeecCCcEEEEEec
Confidence 35666666677777778888888876651 01 1 234566655421111 212233333333445
Q ss_pred CCcEEEEEecccceeee-----eeeccccccCCC--Cccccccccc---ccccCceeeeEeee--c-ceEEEecceeEEE
Q psy10905 83 PGCSVYQWDTQARSIVN-----KLDCSKLVPCSE--SLQSICIEEP---LRQDQCHVTSVCIL--D-TCLYIGTTWGCIV 149 (219)
Q Consensus 83 pg~~Vyqw~~~tr~I~~-----~LD~skl~PcSE--sl~si~iee~---l~~~~~qVtaL~~~--~-~~LYIGTtwG~ii 149 (219)
.|-.||++..---+|+. -||+-.+=--+. -|.-+-.++- +.....|||+|+.- + .-|-+|++.|.+.
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~ 270 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA 270 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEE
Confidence 55555554433333332 133333111111 1111111111 22357999999997 3 5678899999999
Q ss_pred EEecCcceeeeeec-ccccceeEEeeecC
Q psy10905 150 VAEKDSLRPITVFR-PYEELVTAILPLGG 177 (219)
Q Consensus 150 Vaea~tLrPit~fr-p~e~~V~~Ii~l~g 177 (219)
+-|-..=+-+.+.| -|++-|..+.-|.|
T Consensus 271 ~wDLe~kkl~~v~~nah~~sv~~~~fl~~ 299 (910)
T KOG1539|consen 271 FWDLEKKKLINVTRNAHYGSVTGATFLPG 299 (910)
T ss_pred EEEcCCCeeeeeeeccccCCcccceecCC
Confidence 99988888888888 78899999988876
No 134
>PF10838 DUF2677: Protein of unknown function (DUF2677); InterPro: IPR022545 Members in this family are represented by human cytomegalovirus UL121 proteins of unknown function.
Probab=21.13 E-value=5e+02 Score=22.62 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=48.0
Q ss_pred eeeeeccCCccccceeEEEeecCCCCceEEEEEeCCc-EEEEEecccce---eeeeeeccccccC-CCCccccccccccc
Q psy10905 49 HDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGC-SVYQWDTQARS---IVNKLDCSKLVPC-SESLQSICIEEPLR 123 (219)
Q Consensus 49 ~~~l~h~~~~~~~~~V~~L~~~~~~~~~Vwsyv~pg~-~Vyqw~~~tr~---I~~~LD~skl~Pc-SEsl~si~iee~l~ 123 (219)
.-.+||+++ -.+.|+++.. .-.+-||=-+.-+. .|-.++.++.. +..+++..+..-| ||.
T Consensus 13 ~~~iC~~~~--g~VrVtC~l~--vl~~~lyW~i~d~~~RV~~f~~e~~~e~~~~~rv~v~h~~~~~se~----------- 77 (161)
T PF10838_consen 13 TMHICSPPN--GHVRVTCMLD--VLDARLYWFINDTSTRVWLFDQEDETEGGVPYRVEVRHCHSQPSEY----------- 77 (161)
T ss_pred CceEEeeCC--CcEEEEEEhh--heeeEEEEEecCCcceeEeecccccccCCcceEEEEeeeeeecCcc-----------
Confidence 345677665 3467777752 12334777777777 88888866655 6788888864443 433
Q ss_pred ccCceeeeEeeecceEEEecceeEEEE
Q psy10905 124 QDQCHVTSVCILDTCLYIGTTWGCIVV 150 (219)
Q Consensus 124 ~~~~qVtaL~~~~~~LYIGTtwG~iiV 150 (219)
++.| .--++.-||-|.+++
T Consensus 78 -----~~~L---~~Pp~~n~T~~llL~ 96 (161)
T PF10838_consen 78 -----VSIL---ETPPQPNITVGLLLQ 96 (161)
T ss_pred -----eEEE---EcCCCCCcEEEEEEe
Confidence 2222 256667777777663
No 135
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=21.02 E-value=1.5e+02 Score=27.26 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=27.6
Q ss_pred cCceeeeEeeec---------ceEEEecceeEEEEEecCcc
Q psy10905 125 DQCHVTSVCILD---------TCLYIGTTWGCIVVAEKDSL 156 (219)
Q Consensus 125 ~~~qVtaL~~~~---------~~LYIGTtwG~iiVaea~tL 156 (219)
.+.-||+|+... +.|.|||=-|.|.|+|....
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af 215 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF 215 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh
Confidence 566899999865 79999999999999997665
No 136
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=20.66 E-value=6.2e+02 Score=24.33 Aligned_cols=33 Identities=9% Similarity=0.229 Sum_probs=21.5
Q ss_pred cCCCCceEEEEEeCCcEEEEEecccceeeeeee
Q psy10905 70 SPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLD 102 (219)
Q Consensus 70 ~~~~~~~Vwsyv~pg~~Vyqw~~~tr~I~~~LD 102 (219)
++.+...++..-.....++.||..|++...+++
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 344444566555666889999999999999876
No 137
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=20.24 E-value=2.7e+02 Score=28.82 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=43.5
Q ss_pred cCceeeeEee--ecceEEEecceeEEEEEecCcceeeeeecccccceeEEeeec
Q psy10905 125 DQCHVTSVCI--LDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPLG 176 (219)
Q Consensus 125 ~~~qVtaL~~--~~~~LYIGTtwG~iiVaea~tLrPit~frp~e~~V~~Ii~l~ 176 (219)
...+|.+++. ++..+.+-..=|-|=+.|+.||++++-+++.+++...|..+.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~ 311 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLF 311 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccc
Confidence 4567888877 458899999999999999999999988877778888777664
No 138
>KOG0771|consensus
Probab=20.00 E-value=2.5e+02 Score=27.61 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=41.0
Q ss_pred ccCceeeeEeeec--ceEEEecceeEEEEEecCcceeeeee-cccccceeEEeeec
Q psy10905 124 QDQCHVTSVCILD--TCLYIGTTWGCIVVAEKDSLRPITVF-RPYEELVTAILPLG 176 (219)
Q Consensus 124 ~~~~qVtaL~~~~--~~LYIGTtwG~iiVaea~tLrPit~f-rp~e~~V~~Ii~l~ 176 (219)
....-||+|+++. ..+=+||--|-|.|+++.+|+-+-.+ |-|..=|+.+--++
T Consensus 279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence 3556788998865 89999999999999999999876655 46777666655443
Done!