RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10905
(219 letters)
>gnl|CDD|222760 pfam14450, FtsA, Cell division protein FtsA. FtsA is essential for
bacterial cell division, and co-localises to the septal
ring with FtsZ. It has been suggested that the
interaction of FtsA-FtsZ has arisen through coevolution
in different bacterial strains. The FtsA protein
contains two structurally related actin-like ATPase
domains which are also structurally related to the
ATPase domains of HSP70 (see PF00012). FtsA has a SHS2
domain PF02491 inserted in to the RnaseH fold PF02491.
Length = 159
Score = 30.3 bits (69), Expect = 0.44
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 15/50 (30%)
Query: 132 VCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAILPLGGDIVT 181
V +LD IG+ I V + SL +++ +GG +T
Sbjct: 1 VALLD----IGSGKTDIAVFKDGSLG-----------YISVIGVGGGHIT 35
>gnl|CDD|218807 pfam05912, DUF870, Caenorhabditis elegans protein of unknown
function (DUF870). This family consists of a number of
hypothetical proteins which seem to be specific to
Caenorhabditis elegans. The function of this family is
unknown.
Length = 120
Score = 28.6 bits (64), Expect = 1.2
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 23 VPGELWCGESDGNISIYTMSEHSVTSHDTVNH 54
+PG+ WCGE +Y + E HD +
Sbjct: 10 IPGKYWCGE------LYILEEDVKGFHDILKQ 35
>gnl|CDD|214430 MTH00140, COX2, cytochrome c oxidase subunit II; Provisional.
Length = 228
Score = 28.0 bits (63), Expect = 3.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 76 WVWSYVYPGCSVYQWD 91
W WSY Y SV ++D
Sbjct: 104 WYWSYEYSDFSVIEFD 119
>gnl|CDD|129498 TIGR00403, ndhI, NADH-plastoquinone oxidoreductase subunit I
protein. [Energy metabolism, Electron transport].
Length = 183
Score = 27.6 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 140 YIGTTWGCIVVAEKDSLRPITVFRPYEELVTA 171
YIG G V + + PIT+ PYE+L+ +
Sbjct: 21 YIGQ--GFAVTLDHMNRLPITIQYPYEKLIPS 50
>gnl|CDD|223032 PHA03283, PHA03283, envelope glycoprotein E; Provisional.
Length = 542
Score = 27.6 bits (61), Expect = 5.9
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 132 VCILDTCLYIGTTWGCIVVAEKDSLRPITVFRPYEELVTAI 172
+C L WGCI+ + +P V P+E + T++
Sbjct: 407 ICTCAALLVALVVWGCILYRRSNR-KPYEVLNPFETVYTSV 446
>gnl|CDD|225829 COG3292, COG3292, Predicted periplasmic ligand-binding sensor
domain [Signal transduction mechanisms].
Length = 671
Score = 27.5 bits (61), Expect = 6.1
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 7 VLTE---LGASSVLHAITAVPGELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVD 63
VL E L +S V + LW G S G + E N +P +D
Sbjct: 409 VLDEDAGLPSSEVSAIVEDPDNSLWIGTSGG--LVKRDPESGRVL----NLLNPGSHGLD 462
Query: 64 VSF---LVSSPSTSAWVWSYVYPGCSVYQWDTQARSIVNKLD 102
S L P W+ + G V W++Q R V LD
Sbjct: 463 GSRVEQLGLGPDGRLWLAA----GSGVAAWESQRRMFVPILD 500
>gnl|CDD|198216 cd10353, SH2_Nterm_RasGAP, N-terminal Src homology 2 (SH2) domain
found in Ras GTPase-activating protein 1 (GAP). RasGAP
is part of the GAP1 family of GTPase-activating
proteins. The protein is located in the cytoplasm and
stimulates the GTPase activity of normal RAS p21, but
not its oncogenic counterpart. Acting as a suppressor
of RAS function, the protein enhances the weak
intrinsic GTPase activity of RAS proteins resulting in
RAS inactivation, thereby allowing control of cellular
proliferation and differentiation. Mutations leading to
changes in the binding sites of either protein are
associated with basal cell carcinomas. Alternative
splicing results in two isoforms. The shorter isoform
which lacks the N-terminal hydrophobic region, has the
same activity, and is expressed in placental tissues.
In general the longer isoform contains 2 SH2 domains, a
SH3 domain, a pleckstrin homology (PH) domain, and a
calcium-dependent phospholipid-binding C2 domain. The
C-terminus contains the catalytic domain of RasGap
which catalyzes the activation of Ras by hydrolyzing
GTP-bound active Ras into an inactive GDP-bound form of
Ras. This model contains the N-terminal SH2 domain. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 103
Score = 25.9 bits (57), Expect = 8.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 4 GSFVLTELGASSVLH-AITAVPGELWCG 30
GSFVL+ L + V H I A+ G+ + G
Sbjct: 54 GSFVLSFLSRTGVNHFRIIAMCGDYYIG 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.418
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,389,486
Number of extensions: 895908
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 10
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)