RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10905
         (219 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 36/213 (16%), Positives = 60/213 (28%), Gaps = 75/213 (35%)

Query: 39  YTMSEHSVTSHDTVNHFHP-----------------VISNVDVSFLVSSPSTSAWVWSYV 81
           +   EH     D ++ F                   ++S  ++  ++ S           
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA-------- 60

Query: 82  YPGCSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQD----------QCHVTS 131
                     +    +   L  SK     E +    +EE LR +          +    S
Sbjct: 61  ---------VSGTLRLFWTL-LSK----QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 132 VCILDTCLYIGT---TWGCIVVAEKDSLRPITVFR--PYEELVTAILPL-GGDIVTI--- 182
              + T +YI      +      +        V R  PY +L  A+L L     V I   
Sbjct: 107 ---MMTRMYIEQRDRLYN-----DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 183 -GRGYRSLVSRYTNSTASS---QCKENHFALLW 211
            G G   +          S   QCK + F + W
Sbjct: 159 LGSGKTWVA----LDVCLSYKVQCKMD-FKIFW 186


>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
           (ONE-component...; beta-propeller, beta-sandwich; 3.30A
           {Bacteroides thetaiotaomicron}
          Length = 781

 Score = 32.3 bits (74), Expect = 0.11
 Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 20/157 (12%)

Query: 25  GELWCGESDGNISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPG 84
             +W       ++ Y     S + +         +   DV+ + SS      +W      
Sbjct: 78  PVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLW-VCTYY 136

Query: 85  CSVYQWDTQARSIVNKLDCSKLVPCSESLQSICIEEPLRQDQCHVTSVCILDTCLYIGTT 144
             +   D       +    +     SE   +    E               D  LYIG  
Sbjct: 137 RGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAE---------------DGKLYIGHV 181

Query: 145 WGCIVVAEKDSLRPITVFRPYEELVTAILPLGGDIVT 181
            G + +   +        + +         L G+ V 
Sbjct: 182 EGGLSILSLNDKS----VKHFVHDPQNPNSLPGNDVR 214


>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga
           maritima} SCOP: a.8.3.3 c.6.2.4
          Length = 528

 Score = 27.5 bits (60), Expect = 3.5
 Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 16/81 (19%)

Query: 24  PGELWCGE---SDGNISI-------YTMSE----HSVTSHDTVNHFHPVISNVDVSFLVS 69
           P  +W  E     G           Y   +               + P+++   V     
Sbjct: 178 PRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFAR 237

Query: 70  SPSTSAWVWSYV--YPGCSVY 88
            P +S  VWS    YPG   Y
Sbjct: 238 DPESSEQVWSAAVGYPGDPRY 258


>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
           receptor for activiated protein C-kinase 1,
           beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
           coli}
          Length = 694

 Score = 27.0 bits (60), Expect = 6.5
 Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 15/99 (15%)

Query: 51  TVNHFHPVISN---VDVSFLVSSPSTSAWVW---------SYVYPGCSVYQWDTQARSIV 98
            VN   P+ +         L   P  +A +          +        Y   T   +  
Sbjct: 292 AVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAA 351

Query: 99  NKLDCSKLVPCSESLQSICIEEPLRQDQCH---VTSVCI 134
           +          +    +          + H   VT++  
Sbjct: 352 SGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIAT 390


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.131    0.418 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,225,278
Number of extensions: 174933
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 10
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)