RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10905
         (219 letters)



>d1r61a_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus
          [TaxId: 1422]}
          Length = 205

 Score = 30.8 bits (69), Expect = 0.075
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 1/63 (1%)

Query: 35 NISIYTMSEHSVTSHDTVNHFHPVISNVDVSFLVSSPSTSAWVWSYVYPGCSVYQWDTQA 94
            S   M  H+ T  D   H     +  +   L +       ++   +    + + D   
Sbjct: 38 TESRIDMDVHTGTHIDAPLHMVEGGATFETIPL-NDLVGPCKLFDLTHVNDRITKDDIAH 96

Query: 95 RSI 97
            I
Sbjct: 97 LDI 99


>d2b0aa1 c.8.8.1 (A:1-186) Hypothetical protein MJ0783
          {Methanococcus jannaschii [TaxId: 2190]}
          Length = 186

 Score = 28.1 bits (62), Expect = 0.70
 Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 1/34 (2%)

Query: 31 ESDG-NISIYTMSEHSVTSHDTVNHFHPVISNVD 63
          + DG  +S   M  H  T  D   H         
Sbjct: 26 KIDGFIVSEIIMGSHLCTHIDYPKHVGLENRIPF 59


>d1qr0a2 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl transferase
           SFP {Bacillus subtilis [TaxId: 1423]}
          Length = 127

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 7/46 (15%)

Query: 174 PLGGDIVTIGRGYRSLVSRYTN-------STASSQCKENHFALLWS 212
           P+G DI         +  R+ +              + ++F  LWS
Sbjct: 2   PIGIDIEKTKPISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWS 47


>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase
           {Garden sage (Salvia officinalis) [TaxId: 38868]}
          Length = 328

 Score = 25.2 bits (55), Expect = 6.5
 Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 41  MSEHSVTSHDTVNHFHPVISNV--DVSFLVSSPST 73
           M E + +  + V H   +I     D++  +++   
Sbjct: 248 MKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYP 282


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.418 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 803,818
Number of extensions: 34592
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 5
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)