Query psy10907
Match_columns 72
No_of_seqs 134 out of 1016
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 21:35:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 99.9 2E-23 4.4E-28 158.4 7.4 68 4-71 456-523 (671)
2 KOG3618|consensus 99.8 3.2E-20 6.8E-25 143.7 4.0 68 5-72 355-422 (1318)
3 KOG3619|consensus 99.8 1.7E-18 3.6E-23 134.9 8.1 68 5-72 127-194 (867)
4 KOG1023|consensus 99.7 4.5E-18 9.7E-23 126.4 2.8 67 5-71 311-378 (484)
5 PF00211 Guanylate_cyc: Adenyl 99.5 1.1E-13 2.4E-18 88.9 8.2 67 5-71 23-89 (184)
6 cd07302 CHD cyclase homology d 99.3 3.6E-11 7.7E-16 75.2 9.0 66 6-71 17-82 (177)
7 smart00044 CYCc Adenylyl- / gu 99.3 6.1E-11 1.3E-15 77.1 9.4 67 5-71 51-118 (194)
8 KOG3619|consensus 99.2 1.6E-11 3.5E-16 96.3 5.3 63 9-71 673-748 (867)
9 COG2114 CyaA Adenylate cyclase 99.2 3.6E-10 7.8E-15 76.3 9.0 66 4-70 60-126 (227)
10 KOG3618|consensus 99.0 2.4E-10 5.2E-15 89.7 2.0 64 8-71 1103-1176(1318)
11 cd07556 Nucleotidyl_cyc_III Cl 90.2 2.4 5.2E-05 24.6 8.7 60 5-69 16-75 (133)
12 PF01025 GrpE: GrpE; InterPro 89.8 0.56 1.2E-05 29.9 3.6 35 9-43 86-120 (165)
13 PRK14147 heat shock protein Gr 85.6 1.7 3.8E-05 28.7 4.0 34 10-43 92-125 (172)
14 cd00446 GrpE GrpE is the adeni 84.3 2.3 5E-05 26.6 4.0 35 9-43 60-94 (137)
15 PRK14144 heat shock protein Gr 81.9 2.6 5.6E-05 28.7 3.7 33 11-43 121-153 (199)
16 PRK10325 heat shock protein Gr 81.7 2.8 6E-05 28.3 3.8 34 10-43 116-149 (197)
17 PRK14139 heat shock protein Gr 81.5 3 6.6E-05 28.0 3.9 34 10-43 106-139 (185)
18 PRK14151 heat shock protein Gr 81.0 3.2 7E-05 27.6 3.9 33 11-43 98-130 (176)
19 PRK14162 heat shock protein Gr 79.0 4 8.6E-05 27.7 3.9 33 11-43 116-148 (194)
20 PRK14145 heat shock protein Gr 79.0 3.9 8.5E-05 27.8 3.8 33 11-43 119-151 (196)
21 PRK14153 heat shock protein Gr 78.7 4.3 9.3E-05 27.5 4.0 34 10-43 109-142 (194)
22 PRK14140 heat shock protein Gr 78.6 4.3 9.2E-05 27.4 3.9 33 11-43 114-146 (191)
23 PRK14150 heat shock protein Gr 76.6 5.1 0.00011 26.9 3.9 33 11-43 116-148 (193)
24 PRK14143 heat shock protein Gr 76.5 4.7 0.0001 28.1 3.8 33 11-43 145-177 (238)
25 PRK14157 heat shock protein Gr 76.4 3.2 7E-05 28.8 2.9 28 16-43 152-179 (227)
26 PRK14163 heat shock protein Gr 76.3 4.4 9.5E-05 27.9 3.5 32 12-43 111-142 (214)
27 PRK14164 heat shock protein Gr 76.1 3.4 7.3E-05 28.5 2.9 27 17-43 147-173 (218)
28 PRK14146 heat shock protein Gr 75.7 5.4 0.00012 27.4 3.8 33 11-43 131-163 (215)
29 COG0056 AtpA F0F1-type ATP syn 75.3 6.5 0.00014 30.2 4.5 46 7-52 2-47 (504)
30 PRK14158 heat shock protein Gr 75.2 6.2 0.00013 26.7 4.0 34 10-43 115-149 (194)
31 COG3427 Carbon monoxide dehydr 73.8 6.5 0.00014 25.6 3.7 41 7-51 10-51 (146)
32 PRK14141 heat shock protein Gr 73.1 7 0.00015 26.8 3.9 33 11-43 114-146 (209)
33 PRK14142 heat shock protein Gr 71.7 4.9 0.00011 27.9 2.9 27 17-43 110-136 (223)
34 PRK14148 heat shock protein Gr 68.9 10 0.00023 25.6 3.9 33 11-43 117-149 (195)
35 PRK14828 undecaprenyl pyrophos 66.7 18 0.00038 25.4 4.9 41 7-52 86-126 (256)
36 COG0576 GrpE Molecular chapero 66.6 12 0.00026 25.1 3.9 33 11-43 114-146 (193)
37 PRK14155 heat shock protein Gr 65.8 11 0.00024 25.7 3.7 33 11-43 93-126 (208)
38 KOG3003|consensus 63.3 12 0.00026 26.3 3.4 35 9-43 152-186 (236)
39 PF14056 DUF4250: Domain of un 63.2 2.5 5.4E-05 23.2 0.1 36 8-43 3-48 (55)
40 PRK14161 heat shock protein Gr 59.4 20 0.00044 23.9 3.9 33 11-43 98-131 (178)
41 PRK14831 undecaprenyl pyrophos 58.5 29 0.00062 24.3 4.7 41 7-52 79-122 (249)
42 PRK14154 heat shock protein Gr 56.6 23 0.00049 24.3 3.9 33 11-43 130-163 (208)
43 PF10664 NdhM: Cyanobacterial 56.2 14 0.00029 23.0 2.5 18 15-32 42-59 (108)
44 PRK14149 heat shock protein Gr 55.7 26 0.00056 23.7 4.0 31 10-40 112-142 (191)
45 COG2429 Archaeal GTP cyclohydr 55.5 45 0.00097 23.6 5.2 43 6-48 148-190 (250)
46 PRK14159 heat shock protein Gr 54.7 21 0.00045 23.8 3.4 30 11-40 100-129 (176)
47 PF01255 Prenyltransf: Putativ 54.5 32 0.00069 23.3 4.3 42 7-52 53-98 (223)
48 PF01964 ThiC: ThiC family; I 53.5 9.8 0.00021 28.8 1.8 24 18-43 198-224 (420)
49 PF07765 KIP1: KIP1-like prote 52.7 25 0.00054 20.5 3.1 21 12-32 54-74 (74)
50 PRK14160 heat shock protein Gr 52.3 29 0.00063 23.8 3.9 30 11-40 135-164 (211)
51 PF08621 RPAP1_N: RPAP1-like, 52.1 14 0.00031 19.7 1.9 23 6-28 13-35 (49)
52 TIGR00190 thiC thiamine biosyn 51.4 12 0.00025 28.4 1.9 24 18-43 199-225 (423)
53 cd00475 CIS_IPPS Cis (Z)-Isopr 49.9 45 0.00097 22.9 4.5 42 7-52 59-102 (221)
54 PF09061 Stirrup: Stirrup; In 49.7 50 0.0011 19.1 4.0 29 20-49 8-36 (79)
55 PRK09284 thiamine biosynthesis 48.5 14 0.00029 29.2 1.9 24 18-43 352-378 (607)
56 PF07342 DUF1474: Protein of u 47.8 29 0.00062 21.3 2.9 30 7-36 58-88 (100)
57 PF04405 ScdA_N: Domain of Unk 47.7 14 0.00029 20.1 1.4 17 5-21 40-56 (56)
58 PTZ00458 acyl CoA binding prot 46.9 5.2 0.00011 23.9 -0.4 19 25-43 24-42 (90)
59 PLN02444 HMP-P synthase 46.6 15 0.00033 29.1 2.0 24 18-43 357-383 (642)
60 PRK13352 thiamine biosynthesis 46.3 16 0.00034 27.8 1.9 24 18-43 202-228 (431)
61 PF01155 HypA: Hydrogenase exp 46.2 66 0.0014 19.5 6.3 49 14-69 4-52 (113)
62 PRK14838 undecaprenyl pyrophos 45.7 58 0.0013 22.7 4.6 41 7-52 69-110 (242)
63 COG4030 Uncharacterized protei 45.6 11 0.00025 26.9 1.1 36 6-41 154-189 (315)
64 COG1448 TyrB Aspartate/tyrosin 44.5 40 0.00086 25.4 3.8 32 25-59 359-390 (396)
65 PRK14841 undecaprenyl pyrophos 43.2 68 0.0015 22.2 4.6 42 7-52 62-105 (233)
66 COG0422 ThiC Thiamine biosynth 41.8 19 0.00041 27.3 1.7 26 18-43 200-226 (432)
67 PRK03681 hypA hydrogenase nick 41.5 82 0.0018 19.2 6.4 47 15-68 5-51 (114)
68 PRK14833 undecaprenyl pyrophos 41.2 75 0.0016 22.0 4.6 42 7-52 63-106 (233)
69 PRK08172 putative acyl carrier 41.2 5.1 0.00011 23.2 -1.1 37 7-43 35-71 (82)
70 PRK12380 hydrogenase nickel in 40.5 85 0.0018 19.1 6.4 48 15-69 5-52 (113)
71 PF08987 DUF1892: Protein of u 40.4 94 0.002 19.6 4.9 35 12-46 49-85 (115)
72 PRK14836 undecaprenyl pyrophos 39.0 82 0.0018 22.1 4.5 36 7-42 73-110 (253)
73 TIGR00055 uppS undecaprenyl di 37.9 88 0.0019 21.6 4.5 41 7-52 58-101 (226)
74 PRK10240 undecaprenyl pyrophos 37.9 90 0.002 21.5 4.6 41 7-52 52-95 (229)
75 PRK14839 undecaprenyl pyrophos 37.7 88 0.0019 21.9 4.5 42 7-52 68-111 (239)
76 PF12990 DUF3874: Domain of un 37.6 37 0.00079 19.5 2.2 43 2-44 20-72 (73)
77 PF12631 GTPase_Cys_C: Catalyt 37.5 11 0.00023 21.2 -0.1 10 15-24 63-72 (73)
78 PRK00762 hypA hydrogenase nick 37.1 1E+02 0.0022 19.1 6.4 47 15-68 5-51 (124)
79 PRK14840 undecaprenyl pyrophos 36.7 92 0.002 21.9 4.5 42 7-52 81-124 (250)
80 PF07865 DUF1652: Protein of u 36.7 55 0.0012 18.6 2.8 31 39-69 36-66 (69)
81 cd06246 M14_CPB2 Peptidase M14 34.7 59 0.0013 23.1 3.3 27 17-43 8-35 (300)
82 KOG0817|consensus 34.2 10 0.00023 24.5 -0.5 19 25-43 26-44 (142)
83 PRK07117 acyl carrier protein; 34.2 7.8 0.00017 22.3 -1.0 33 11-43 40-72 (79)
84 TIGR00100 hypA hydrogenase nic 33.7 1.1E+02 0.0025 18.6 6.4 47 15-68 5-51 (115)
85 COG1534 Predicted RNA-binding 33.4 79 0.0017 19.2 3.3 24 19-42 31-54 (97)
86 PRK14842 undecaprenyl pyrophos 32.7 1.2E+02 0.0026 21.1 4.5 42 7-52 67-110 (241)
87 KOG1412|consensus 32.5 1.3E+02 0.0028 22.7 4.8 40 25-67 366-405 (410)
88 PF05165 GGDN: GGDN family; I 31.7 1.9E+02 0.0041 20.4 5.7 43 6-48 144-186 (246)
89 PF14848 HU-DNA_bdg: DNA-bindi 31.5 1.3E+02 0.0028 18.5 4.3 46 4-51 41-87 (124)
90 PF13405 EF-hand_6: EF-hand do 31.3 34 0.00073 15.6 1.2 10 17-26 2-11 (31)
91 PRK14835 undecaprenyl pyrophos 31.2 1.4E+02 0.0029 21.3 4.7 41 7-51 100-144 (275)
92 COG1244 Predicted Fe-S oxidore 31.2 63 0.0014 24.0 3.0 23 18-40 82-110 (358)
93 PRK14830 undecaprenyl pyrophos 31.0 1.4E+02 0.003 20.9 4.6 41 7-51 81-123 (251)
94 PHA03302 envelope glycoprotein 30.7 8.4 0.00018 27.3 -1.5 25 19-43 136-160 (253)
95 PF04079 DUF387: Putative tran 30.1 1.5E+02 0.0032 19.2 4.4 36 9-47 25-60 (159)
96 PF15208 Rab15_effector: Rab15 29.8 39 0.00084 23.6 1.7 29 20-53 141-172 (236)
97 cd03872 M14_CPA6 Carboxypeptid 29.7 76 0.0017 22.6 3.2 27 17-43 5-32 (300)
98 PF06198 DUF999: Protein of un 29.6 70 0.0015 20.3 2.7 21 10-30 52-72 (143)
99 PRK14837 undecaprenyl pyrophos 29.6 1.6E+02 0.0035 20.4 4.7 41 7-52 65-108 (230)
100 TIGR00253 RNA_bind_YhbY putati 29.3 1E+02 0.0022 18.4 3.3 24 19-42 30-53 (95)
101 COG0435 ECM4 Predicted glutath 29.0 53 0.0011 24.0 2.3 16 9-24 145-160 (324)
102 KOG1602|consensus 29.0 1.7E+02 0.0036 21.1 4.8 36 7-42 95-135 (271)
103 PRK14834 undecaprenyl pyrophos 27.5 1.7E+02 0.0038 20.4 4.6 42 7-52 73-116 (249)
104 PF03139 AnfG_VnfG: Vanadium/a 27.4 95 0.0021 19.4 3.0 24 6-29 76-99 (112)
105 PRK02240 GTP cyclohydrolase II 26.5 1.6E+02 0.0034 20.9 4.3 37 15-51 29-66 (254)
106 TIGR03324 alt_F1F0_F1_al alter 26.5 98 0.0021 23.9 3.5 43 10-52 5-47 (497)
107 cd06247 M14_CPO Peptidase M14 26.3 87 0.0019 22.3 3.0 27 17-43 7-34 (298)
108 COG4013 Uncharacterized protei 26.1 66 0.0014 19.3 2.0 19 1-19 1-19 (91)
109 PF12339 DNAJ_related: DNA-J r 25.8 73 0.0016 20.2 2.3 19 6-24 113-131 (132)
110 PHA03159 hypothetical protein; 25.6 1.5E+02 0.0032 19.3 3.7 38 10-47 24-67 (160)
111 PTZ00349 dehydrodolichyl dipho 25.5 1.9E+02 0.0042 21.2 4.7 41 7-52 78-124 (322)
112 cd03870 M14_CPA Peptidase M14 25.5 1E+02 0.0023 21.9 3.3 27 17-43 9-36 (301)
113 PRK10343 RNA-binding protein Y 25.3 1.3E+02 0.0029 18.1 3.3 22 19-40 32-53 (97)
114 PF14682 SPOB_ab: Sporulation 25.2 1.5E+02 0.0033 18.3 3.7 24 9-32 34-57 (115)
115 PRK12449 acyl carrier protein; 25.1 16 0.00034 20.4 -0.8 36 7-42 36-71 (80)
116 PF15151 RGCC: Response gene t 25.1 96 0.0021 19.6 2.7 20 12-31 16-35 (121)
117 PRK14832 undecaprenyl pyrophos 24.9 1.9E+02 0.0041 20.3 4.5 42 7-52 77-120 (253)
118 TIGR00032 argG argininosuccina 24.8 79 0.0017 23.5 2.7 34 6-46 230-263 (394)
119 PRK05828 acyl carrier protein; 24.8 13 0.00029 21.6 -1.1 37 9-45 38-74 (84)
120 PF13026 DUF3887: Protein of u 24.6 75 0.0016 19.3 2.1 20 8-27 9-33 (101)
121 TIGR00211 glyS glycyl-tRNA syn 24.4 2.5E+02 0.0055 22.6 5.5 49 5-53 12-65 (691)
122 PHA01623 hypothetical protein 24.3 15 0.00032 20.0 -0.9 22 18-39 22-43 (56)
123 KOG4206|consensus 23.4 44 0.00096 23.2 1.1 44 5-48 18-61 (221)
124 PRK13343 F0F1 ATP synthase sub 23.4 1.1E+02 0.0023 23.7 3.2 46 7-52 2-47 (502)
125 PRK01233 glyS glycyl-tRNA synt 23.2 2.7E+02 0.0059 22.4 5.4 50 5-54 10-64 (682)
126 PF15585 Imm46: Immunity prote 22.5 2.2E+02 0.0048 18.2 4.9 50 9-62 22-72 (129)
127 PHA01748 hypothetical protein 22.5 73 0.0016 17.3 1.7 17 19-35 12-28 (60)
128 COG4702 Uncharacterized conser 22.3 1.1E+02 0.0023 20.5 2.6 25 32-57 120-147 (168)
129 PF11176 DUF2962: Protein of u 22.2 1.6E+02 0.0035 19.0 3.5 29 4-32 62-90 (155)
130 cd08876 START_1 Uncharacterize 22.0 1.7E+02 0.0037 18.5 3.6 38 8-47 51-94 (195)
131 PF12651 RHH_3: Ribbon-helix-h 21.9 1E+02 0.0022 15.6 2.0 18 18-35 11-28 (44)
132 KOG2650|consensus 21.9 1.4E+02 0.0029 22.7 3.4 32 12-43 119-151 (418)
133 PF09114 MotA_activ: Transcrip 21.6 2E+02 0.0044 17.5 4.4 36 9-47 32-73 (96)
134 PF02197 RIIa: Regulatory subu 21.5 89 0.0019 15.4 1.7 19 7-25 16-34 (38)
135 TIGR02929 anfG_nitrog Fe-only 21.5 1.4E+02 0.0031 18.6 2.9 24 6-29 73-96 (109)
136 PF10113 Fibrillarin_2: Fibril 21.4 2.6E+02 0.0055 21.8 4.8 28 26-53 213-259 (505)
137 PF02092 tRNA_synt_2f: Glycyl- 21.4 3.3E+02 0.0072 21.3 5.5 49 5-53 7-60 (548)
138 PF10015 DUF2258: Uncharacteri 20.8 1.9E+02 0.0041 16.8 3.5 30 6-35 26-56 (75)
139 PF07377 DUF1493: Protein of u 20.8 1.2E+02 0.0027 18.1 2.6 29 7-35 38-66 (111)
140 PF09687 PRESAN: Plasmodium RE 20.6 1.3E+02 0.0028 17.5 2.7 22 12-33 41-62 (129)
141 PF10211 Ax_dynein_light: Axon 20.6 89 0.0019 20.7 2.1 21 10-30 53-74 (189)
142 cd00907 Bacterioferritin Bacte 20.5 19 0.00042 22.1 -1.1 40 5-44 107-149 (153)
143 PRK13907 rnhA ribonuclease H; 20.4 2E+02 0.0044 17.0 4.7 39 17-65 87-125 (128)
144 TIGR02930 vnfG_nitrog V-contai 20.3 1.6E+02 0.0034 18.4 2.9 24 6-29 73-96 (109)
145 PF13202 EF-hand_5: EF hand; P 20.1 67 0.0015 14.2 1.0 10 17-26 1-10 (25)
146 PF13050 DUF3911: Protein of u 20.1 1.1E+02 0.0024 17.6 2.1 17 9-26 9-25 (77)
147 cd00435 ACBP Acyl CoA binding 20.1 23 0.00049 20.6 -0.8 20 24-43 21-40 (85)
No 1
>KOG4171|consensus
Probab=99.89 E-value=2e-23 Score=158.37 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=64.8
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHHHhh
Q psy10907 4 EEEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAI 71 (72)
Q Consensus 4 ~~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~~i 71 (72)
.|..-+|.|||+|||+||++||++++.|+||||+||||+||+|||+|.++..||++++++||+|+...
T Consensus 456 ic~~ctp~~vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~a 523 (671)
T KOG4171|consen 456 ICSQCTPMQVVNMLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDASDYHAEHIADLALGMMEEA 523 (671)
T ss_pred HhhccCcHHHHHHHHHHHHHHHHhhcccCeEEEeeccchheeecCCCCCChhHHHHHHHHHHHHHHHh
Confidence 46678999999999999999999999999999999999999999999999999999999999999764
No 2
>KOG3618|consensus
Probab=99.80 E-value=3.2e-20 Score=143.72 Aligned_cols=68 Identities=40% Similarity=0.704 Sum_probs=64.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHHHhhC
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~~i~ 72 (72)
+...+++++|.+||+||.+||.+|+..|++||.|+||||.||+|.|.|+.|||-++++|+|+|+.+|+
T Consensus 355 SsnKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTLGDCYYCVaGCPEPraDHA~ccvEMGLgMI~Air 422 (1318)
T KOG3618|consen 355 SSNKSAHALVGLLNDLFGRFDRLCELTGCEKISTLGDCYYCVAGCPEPRADHAYCCVEMGLGMIKAIR 422 (1318)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhcCcchhccccceeeeecCCCCCcccceeeehhhcchHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999874
No 3
>KOG3619|consensus
Probab=99.76 E-value=1.7e-18 Score=134.87 Aligned_cols=68 Identities=49% Similarity=0.911 Sum_probs=65.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHHHhhC
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~~i~ 72 (72)
+.+-+++|+|.+||++|++||++++++++.+||..||||.|+||+|.+++|||.++++|+++|+++|+
T Consensus 127 ~s~~saqelv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~dHA~~~v~mgl~Mi~aI~ 194 (867)
T KOG3619|consen 127 ASQCSAQELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARPDHAVCCVEMGLDMIKAIK 194 (867)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999874
No 4
>KOG1023|consensus
Probab=99.70 E-value=4.5e-18 Score=126.38 Aligned_cols=67 Identities=19% Similarity=0.369 Sum_probs=62.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCc-hHHHHHHHHHHHHHHhh
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRP-NHAYNCVNMGLEMIGAI 71 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~-~ha~~~~~~Al~m~~~i 71 (72)
|.+.+|.+||.+||++|+.||.++++|++|||+||||+||++||+|.++. .|+..++.+|++++..+
T Consensus 311 ~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~ 378 (484)
T KOG1023|consen 311 SSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFL 378 (484)
T ss_pred HhcCCCceeeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999876 59999999999998765
No 5
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.51 E-value=1.1e-13 Score=88.91 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=62.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHHHhh
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAI 71 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~~i 71 (72)
.+..+|++++.+||++|+.|+.++.+|++++++++||+||+++|.|.+..+|+.+++++|+++++.+
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~~~~~~~~~a~~~al~~~~~~ 89 (184)
T PF00211_consen 23 TEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPEPDEDAAERAVQFALALLEAL 89 (184)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSSCHCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCchhHHHHHHHHHHHhhhccccccccccccccceeEEEeccccccccccccccccccchhhcc
Confidence 4667799999999999999999999999999999999999999999888999999999999998764
No 6
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.29 E-value=3.6e-11 Score=75.22 Aligned_cols=66 Identities=27% Similarity=0.312 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHHHhh
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAI 71 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~~i 71 (72)
+..+|++++.+||.+|..++.++.+++.+++++.||+|++++|.|....+++.+++++|+++++.+
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~~~~~~~~A~~~a~~i~~~~ 82 (177)
T cd07302 17 ERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAHEDHAERAVRAALEMQEAL 82 (177)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCCchhHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999998865
No 7
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.27 E-value=6.1e-11 Score=77.09 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=62.5
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCC-chHHHHHHHHHHHHHHhh
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISR-PNHAYNCVNMGLEMIGAI 71 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~-~~ha~~~~~~Al~m~~~i 71 (72)
.++.+|++++.+||.+|..+++++.+||.+.++++||++|+++|.|... .+|+.+++..|+++++.+
T Consensus 51 ~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~v~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~ 118 (194)
T smart00044 51 SSEATPEQVVTLLNDLYSRFDRIIDRHGGYKVKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESL 118 (194)
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999887 599999999999998764
No 8
>KOG3619|consensus
Probab=99.21 E-value=1.6e-11 Score=96.31 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHh--hc-CceEEeeeCCeeeEeeCCCCC----C------chHHHHHHHHHHHHHHhh
Q psy10907 9 EEEEKRRMVSGAVVMLTLDLE--EN-QCMRIKILGDCYYCVSGLPIS----R------PNHAYNCVNMGLEMIGAI 71 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~l~~--~~-~v~KiktiGD~Ym~v~Glp~~----~------~~ha~~~~~~Al~m~~~i 71 (72)
+..|..++||++++.||++.+ ++ +++||||||..|||++|+... + ..|...+++||++|...+
T Consensus 673 eGlECLRlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~~L 748 (867)
T KOG3619|consen 673 EGLECLRLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMHKL 748 (867)
T ss_pred ccchHHHHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHHHH
Confidence 457899999999999999998 44 899999999999999999532 1 268888999999998765
No 9
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.15 E-value=3.6e-10 Score=76.34 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=58.6
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHH-HHHHHHHh
Q psy10907 4 EEEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVN-MGLEMIGA 70 (72)
Q Consensus 4 ~~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~-~Al~m~~~ 70 (72)
-+++.+|+.++.+||.+|..++..+.+||...+|+|||++|+++|.|.+.. +|.+++. .+++|.+.
T Consensus 60 l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~iGD~~la~F~~p~~~~-~A~~~a~~~~~~~~~~ 126 (227)
T COG2114 60 LSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSPLE-DAVACALDLQLALRNP 126 (227)
T ss_pred HhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecceEEEEeCCCCCcH-HHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999877 6766655 67777654
No 10
>KOG3618|consensus
Probab=98.96 E-value=2.4e-10 Score=89.66 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc---CceEEeeeCCeeeEeeCCCCC-------CchHHHHHHHHHHHHHHhh
Q psy10907 8 VEEEEKRRMVSGAVVMLTLDLEEN---QCMRIKILGDCYYCVSGLPIS-------RPNHAYNCVNMGLEMIGAI 71 (72)
Q Consensus 8 ~~p~evv~~Ln~lf~~FD~l~~~~---~v~KiktiGD~Ym~v~Glp~~-------~~~ha~~~~~~Al~m~~~i 71 (72)
.-..|..+.||++...||++.++. .++||||||-+|||+|||... +.+|-..+++||+.|++.+
T Consensus 1103 eGGkEflRVLNElIGDFDELLsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~Vv 1176 (1318)
T KOG3618|consen 1103 EGGKEFLRVLNELIGDFDELLSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQRVV 1176 (1318)
T ss_pred hchHHHHHHHHHHhccHHHHhccccchhhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999975 599999999999999999542 3478899999999999875
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=90.17 E-value=2.4 Score=24.59 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=43.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHHH
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIG 69 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~ 69 (72)
.+...++..-.+|..+...+..++..++..-.++-||.|+++..- +....+...+..+.+
T Consensus 16 ~~~~g~~~~~~~l~~~~~~l~~~~~~~~~~~~r~~~d~f~~l~~~-----~~~~~~~~~~~~i~~ 75 (133)
T cd07556 16 ADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL-----DHPAAAVAFAEDMRE 75 (133)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEeecceEEEEECc-----hHHHHHHHHHHHHHH
Confidence 455677788899999999999999987777778889999999742 223344444444443
No 12
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=89.78 E-value=0.56 Score=29.90 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 9 EEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
....+..-++-++..|..+..++|+++|.+.|+.|
T Consensus 86 ~~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~F 120 (165)
T PF01025_consen 86 EEESLLEGLEMILKQLEDILEKNGVEEIEPVGEPF 120 (165)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCC
Confidence 34577888999999999999999999999999765
No 13
>PRK14147 heat shock protein GrpE; Provisional
Probab=85.64 E-value=1.7 Score=28.73 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 10 EEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 10 p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
+..++.-++-++..|..+..++|+.+|.++|+.|
T Consensus 92 ~~~l~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~F 125 (172)
T PRK14147 92 PSPLRDGLELTYKQLLKVAADNGLTLLDPVGQPF 125 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 4557777888999999999999999999999755
No 14
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=84.33 E-value=2.3 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 9 EEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
....+..-++-+++.|..+..++|+.+|...|+.|
T Consensus 60 ~~~~~~~g~~~i~~~l~~~L~~~Gv~~i~~~g~~F 94 (137)
T cd00446 60 ELKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGEPF 94 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
Confidence 34568888999999999999999999999998644
No 15
>PRK14144 heat shock protein GrpE; Provisional
Probab=81.89 E-value=2.6 Score=28.72 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.-+.-++..|..+..++|+.+|..+|+.|
T Consensus 121 ~~i~~Gv~mi~k~l~~~L~k~GV~~I~~~G~~F 153 (199)
T PRK14144 121 PSMHEGLELTMKLFLDALQKFDVEQIDPLGQTF 153 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 468888999999999999999999999999765
No 16
>PRK10325 heat shock protein GrpE; Provisional
Probab=81.72 E-value=2.8 Score=28.31 Aligned_cols=34 Identities=3% Similarity=-0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 10 EEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 10 p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
...++.=+.-++..|..+..++|+.+|..+|+.|
T Consensus 116 ~~~l~~Gv~m~~~~l~~~L~~~Gv~~i~~~G~~F 149 (197)
T PRK10325 116 MSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPL 149 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCC
Confidence 4567888888999999999999999999999755
No 17
>PRK14139 heat shock protein GrpE; Provisional
Probab=81.45 E-value=3 Score=28.01 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 10 EEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 10 p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
...++.=+.-++..|..+..++|+.+|..+|+.|
T Consensus 106 ~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~F 139 (185)
T PRK14139 106 LEKLREGVELTLKQLTSAFEKGRVVEINPVGEKF 139 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCC
Confidence 4557777788999999999999999999999765
No 18
>PRK14151 heat shock protein GrpE; Provisional
Probab=81.02 E-value=3.2 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.-+.-++..|..+..++|+.+|.++|+.|
T Consensus 98 ~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~F 130 (176)
T PRK14151 98 KPMREGVELTLKMFQDTLKRYQLEAVDPHGEPF 130 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 457778888999999999999999999999855
No 19
>PRK14162 heat shock protein GrpE; Provisional
Probab=79.02 E-value=4 Score=27.65 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.-++-++..|..+..++|+.+|..+|+.|
T Consensus 116 ~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~F 148 (194)
T PRK14162 116 KQLKKGVQMTLDHLVKALKDHGVTEIKADGEKF 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 567788888999999999999999999999654
No 20
>PRK14145 heat shock protein GrpE; Provisional
Probab=79.01 E-value=3.9 Score=27.76 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..+..=++-++..|..+..++|+.+|..+|+.|
T Consensus 119 ~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~F 151 (196)
T PRK14145 119 NSLKEGIELIYRQFKKILDKFGVKEIEAEGQIF 151 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 457778888999999999999999999999765
No 21
>PRK14153 heat shock protein GrpE; Provisional
Probab=78.65 E-value=4.3 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.025 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 10 EEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 10 p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
...++.=+.-++..|..+..++|+.+|..+|+.|
T Consensus 109 ~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~F 142 (194)
T PRK14153 109 MNSIVEGIEMVSKQFFSILEKYGLERIECEGEEF 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 3567777888999999999999999999999865
No 22
>PRK14140 heat shock protein GrpE; Provisional
Probab=78.59 E-value=4.3 Score=27.44 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.=+.-++..|..+..++|+.+|..+|+.|
T Consensus 114 ~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~F 146 (191)
T PRK14140 114 KSLLKGVEMVHRQLLEALKKEGVEVIEAVGEQF 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEeeCCCCCCC
Confidence 456667777899999999999999999999754
No 23
>PRK14150 heat shock protein GrpE; Provisional
Probab=76.58 E-value=5.1 Score=26.95 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.-+.-++..|..+..++|+.+|..+|+.|
T Consensus 116 ~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~F 148 (193)
T PRK14150 116 KALIEGVELTLKSLLDTVAKFGVEVVGPVGEPF 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 557777888999999999999999999999755
No 24
>PRK14143 heat shock protein GrpE; Provisional
Probab=76.50 E-value=4.7 Score=28.07 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..+..-++-++..|..+..++|+.+|..+|+.|
T Consensus 145 ~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~F 177 (238)
T PRK14143 145 QALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEF 177 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCC
Confidence 456777788899999999999999999999755
No 25
>PRK14157 heat shock protein GrpE; Provisional
Probab=76.36 E-value=3.2 Score=28.82 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 16 MVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 16 ~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
-+..++..|..+..+||+++|..+|+.|
T Consensus 152 ~~~~i~k~l~~vL~k~GVe~I~~~Ge~F 179 (227)
T PRK14157 152 SFKAVAAKIDKAFEKFGVEKFGEKGEDF 179 (227)
T ss_pred HHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 3455789999999999999999998754
No 26
>PRK14163 heat shock protein GrpE; Provisional
Probab=76.33 E-value=4.4 Score=27.91 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 12 EKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 12 evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
.++.-++-++..|..+..++|+.+|..+|..|
T Consensus 111 ~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~F 142 (214)
T PRK14163 111 ELVGGFKSVAESLETTVAKLGLQQFGKEGEPF 142 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 46777888999999999999999999999765
No 27
>PRK14164 heat shock protein GrpE; Provisional
Probab=76.08 E-value=3.4 Score=28.50 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 17 VSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 17 Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
|+.+...|-.+..+||+.+|..+|+.|
T Consensus 147 l~~i~~~l~~vL~k~Gve~I~~~Ge~F 173 (218)
T PRK14164 147 LKAFSDKLTNVLAGLKVEKFGEEGDAF 173 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 455778899999999999999999765
No 28
>PRK14146 heat shock protein GrpE; Provisional
Probab=75.72 E-value=5.4 Score=27.38 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.=++-++..|..+..++|+.+|..+|+.|
T Consensus 131 ~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~F 163 (215)
T PRK14146 131 KPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPF 163 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCC
Confidence 557778888999999999999999999999765
No 29
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=75.26 E-value=6.5 Score=30.24 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+..|.|+-+++++-...|+.-.....+=+|..|||..--++|++..
T Consensus 2 ~~~~~ei~~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~~~ 47 (504)
T COG0056 2 QLNPTEISSLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLENV 47 (504)
T ss_pred CCcHHHHHHHHHHHHHhcchhhhhhccceEEEEecceEEEecCchh
Confidence 4578999999999999999999999999999999999999999753
No 30
>PRK14158 heat shock protein GrpE; Provisional
Probab=75.16 E-value=6.2 Score=26.71 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceEEee-eCCee
Q psy10907 10 EEEKRRMVSGAVVMLTLDLEENQCMRIKI-LGDCY 43 (72)
Q Consensus 10 p~evv~~Ln~lf~~FD~l~~~~~v~Kikt-iGD~Y 43 (72)
...++.=+.-++..|..+.+++|+.+|.. +|+.|
T Consensus 115 ~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~F 149 (194)
T PRK14158 115 MSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPF 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 46688888889999999999999999997 78754
No 31
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=73.82 E-value=6.5 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhh-cCceEEeeeCCeeeEeeCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEE-NQCMRIKILGDCYYCVSGLPI 51 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~-~~v~KiktiGD~Ym~v~Glp~ 51 (72)
..+|++|..+||+ .+.++.- .|+..+++.||.|-|.--++.
T Consensus 10 ~~p~e~Vw~~L~d----pe~~a~ciPG~qs~e~~g~e~~~~v~l~i 51 (146)
T COG3427 10 AAPPEAVWEFLND----PEQVAACIPGVQSVETNGDEYTAKVKLKI 51 (146)
T ss_pred cCCHHHHHHHhcC----HHHHHhhcCCcceeeecCCeEEEEEEEee
Confidence 5799999999987 5666664 499999999999988775543
No 32
>PRK14141 heat shock protein GrpE; Provisional
Probab=73.09 E-value=7 Score=26.76 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.=+.-++..|..+.+++|+.+|..+|+.|
T Consensus 114 ~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~F 146 (209)
T PRK14141 114 KALIEGVEMTERAMLNALERHGVKKLDPEGQKF 146 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
Confidence 456667777889999999999999999999654
No 33
>PRK14142 heat shock protein GrpE; Provisional
Probab=71.70 E-value=4.9 Score=27.88 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 17 VSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 17 Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
++.++..|..+..++|+.+|..+|..|
T Consensus 110 v~~I~kqL~~iLek~GVe~I~~~Ge~F 136 (223)
T PRK14142 110 LKSVADKLDSALTGLGLVAFGAEGEDF 136 (223)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 455899999999999999999999654
No 34
>PRK14148 heat shock protein GrpE; Provisional
Probab=68.89 E-value=10 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.=+.-++..|..+..++|+.+|..+|+.|
T Consensus 117 ~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~F 149 (195)
T PRK14148 117 IAMKEGIELTAKMLVDILKKNGVEELDPKGEKF 149 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 456777777899999999999999999998754
No 35
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=66.72 E-value=18 Score=25.40 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..++.++.+ +.-||+.+||- +.+|..
T Consensus 86 ~R~~~Ev~~Lm~L~~~~l~~~~~~-~~irv~~iG~~----~~lp~~ 126 (256)
T PRK14828 86 GRPSEELNPLLDIIEDVVRQLAPD-GRWRVRHVGSL----DLLPAP 126 (256)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh-CCeEEEEECCh----hhCCHH
Confidence 467888877777777777777654 44589999984 455543
No 36
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=66.61 E-value=12 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
..++.-+.-++..|.....++|+.+|...|+.+
T Consensus 114 ~~l~~Gvem~~~~l~~~L~k~Gv~~i~~~Ge~F 146 (193)
T COG0576 114 KALLEGVEMTLDQLLDALEKLGVEEIGPEGEKF 146 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCC
Confidence 357777888999999999999999999999654
No 37
>PRK14155 heat shock protein GrpE; Provisional
Probab=65.79 E-value=11 Score=25.70 Aligned_cols=33 Identities=21% Similarity=0.059 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEee-eCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKI-LGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~Kikt-iGD~Y 43 (72)
..++.=+.-++..|..+..++|+.+|.. +|+.|
T Consensus 93 ~~i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~F 126 (208)
T PRK14155 93 KNFIIGVEMTEKELLGAFERNGLKKIDPAKGDKF 126 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCceecCCCCCCC
Confidence 4577778889999999999999999987 89654
No 38
>KOG3003|consensus
Probab=63.31 E-value=12 Score=26.27 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 9 EEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
+-..+..-|.-....|=+...+||++|+.+||+-|
T Consensus 152 ~L~~l~eGl~mte~ql~~vf~KhGLekldPigekF 186 (236)
T KOG3003|consen 152 DLKDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKF 186 (236)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCceecCCCCCCC
Confidence 33455566666888899999999999999999877
No 39
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=63.23 E-value=2.5 Score=23.25 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHH----HHHHHHHHHhhcCc------eEEeeeCCee
Q psy10907 8 VEEEEKRRMVSG----AVVMLTLDLEENQC------MRIKILGDCY 43 (72)
Q Consensus 8 ~~p~evv~~Ln~----lf~~FD~l~~~~~v------~KiktiGD~Y 43 (72)
+.|.-+++.+|. -|..+|++|..+++ .|.+++|--|
T Consensus 3 ~Dp~mLlS~VN~kLRD~~~sLd~Lc~~~~id~~~l~~kL~~~Gy~Y 48 (55)
T PF14056_consen 3 MDPNMLLSIVNMKLRDEYSSLDELCYDYDIDKEELEEKLASIGYEY 48 (55)
T ss_pred CCcHHHHHHHHHHHHhccCCHHHHHHHhCCCHHHHHHHHHHcCCeE
Confidence 466677777664 67789999999885 4666666655
No 40
>PRK14161 heat shock protein GrpE; Provisional
Probab=59.40 E-value=20 Score=23.85 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEee-eCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKI-LGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~Kikt-iGD~Y 43 (72)
..++.-+.-++..|..+.+++|+.+|.. +|+.|
T Consensus 98 ~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~F 131 (178)
T PRK14161 98 TNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMF 131 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 4577777778999999999999999987 68754
No 41
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=58.46 E-value=29 Score=24.27 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHH---HhhcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLD---LEENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l---~~~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++=+-..|++. ..+++ -||+.|||- +.||..
T Consensus 79 kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~-iri~~iG~~----~~Lp~~ 122 (249)
T PRK14831 79 SRPLEEVNFLMTLFERVLRRELEELMEEN-VRIRFVGDL----DPLPKS 122 (249)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHCC-cEEEEEech----hhCCHH
Confidence 456777754444433444443 33454 589999983 446654
No 42
>PRK14154 heat shock protein GrpE; Provisional
Probab=56.59 E-value=23 Score=24.32 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEee-eCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKI-LGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~Kikt-iGD~Y 43 (72)
..++.=+.-++..|..+..++|+.+|.. +|+.|
T Consensus 130 ~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~F 163 (208)
T PRK14154 130 KSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPF 163 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 4567777789999999999999999997 68754
No 43
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=56.22 E-value=14 Score=22.97 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy10907 15 RMVSGAVVMLTLDLEENQ 32 (72)
Q Consensus 15 ~~Ln~lf~~FD~l~~~~~ 32 (72)
..|+.+|.+||++++.+.
T Consensus 42 ~~l~kVy~~F~eLVe~~~ 59 (108)
T PF10664_consen 42 EALQKVYRKFDELVESYA 59 (108)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 357899999999999764
No 44
>PRK14149 heat shock protein GrpE; Provisional
Probab=55.75 E-value=26 Score=23.69 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceEEeeeC
Q psy10907 10 EEEKRRMVSGAVVMLTLDLEENQCMRIKILG 40 (72)
Q Consensus 10 p~evv~~Ln~lf~~FD~l~~~~~v~KiktiG 40 (72)
...++.=+.-++..|..+..++|+.+|...|
T Consensus 112 ~~~l~~Gv~mi~k~l~~vL~k~GV~~I~~~G 142 (191)
T PRK14149 112 ESALTKGLELTMEKLHEVLARHGIEGIECLE 142 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEeCCCC
Confidence 4567888888999999999999999999876
No 45
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=55.49 E-value=45 Score=23.60 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=36.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeC
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSG 48 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~G 48 (72)
..++|-..-...+.++...++-+.++|.--.-.=||-||++|.
T Consensus 148 d~~~~~~t~~~I~~~~~~L~~~l~k~gal~fflGGDN~ma~~p 190 (250)
T COG2429 148 DIVSPYDTYTEIQRVYATLMRFLEKIGALLFFLGGDNIMAVCP 190 (250)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCcEEEEecCcceEEECC
Confidence 3578889999999999999999999988766555799999984
No 46
>PRK14159 heat shock protein GrpE; Provisional
Probab=54.71 E-value=21 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeC
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILG 40 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiG 40 (72)
..++.=+.-++..|..+..++|+.+|...|
T Consensus 100 ~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G 129 (176)
T PRK14159 100 LKIKEGVQNTLDLFLKKLEKHGVALIKEEK 129 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCEecCCCC
Confidence 456777888999999999999999998876
No 47
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=54.49 E-value=32 Score=23.33 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc----CceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN----QCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~----~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..|+..+... .--+|+.+||- +.+|..
T Consensus 53 ~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~~~irvr~iGd~----~~Lp~~ 98 (223)
T PF01255_consen 53 KRPKEEVDALMDLFERYLRELIDELNFHKNGIRVRVIGDL----SLLPEE 98 (223)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEES-G----GGS-HH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcchhhcCeeEEEEecc----CcCCHH
Confidence 5688998777777777777777633 46799999996 666643
No 48
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=53.51 E-value=9.8 Score=28.76 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHh---hcCceEEeeeCCee
Q psy10907 18 SGAVVMLTLDLE---ENQCMRIKILGDCY 43 (72)
Q Consensus 18 n~lf~~FD~l~~---~~~v~KiktiGD~Y 43 (72)
|=+|+.||++++ +|++.- .+||+.
T Consensus 198 NPly~~fD~lLeI~k~yDVtL--SLGDgl 224 (420)
T PF01964_consen 198 NPLYEHFDRLLEIAKEYDVTL--SLGDGL 224 (420)
T ss_dssp -HHHHTHHHHHHHHTTTT-EE--EE--TT
T ss_pred CcHHHhHHHHHHHHHHhCeeE--eccccc
Confidence 559999999887 566654 678864
No 49
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=52.70 E-value=25 Score=20.48 Aligned_cols=21 Identities=14% Similarity=-0.097 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy10907 12 EKRRMVSGAVVMLTLDLEENQ 32 (72)
Q Consensus 12 evv~~Ln~lf~~FD~l~~~~~ 32 (72)
++|+++.++|...-.++++|+
T Consensus 54 ~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 54 ELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999875
No 50
>PRK14160 heat shock protein GrpE; Provisional
Probab=52.31 E-value=29 Score=23.80 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeC
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILG 40 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiG 40 (72)
..++.-+.-++..|-.+..++|+.+|.+.|
T Consensus 135 ~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G 164 (211)
T PRK14160 135 EDLKKGIEMTVKQFKTSLEKLGVEEISTEG 164 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEeCCCC
Confidence 457788888999999999999999998876
No 51
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=52.10 E-value=14 Score=19.67 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHH
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDL 28 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~ 28 (72)
++|+|+|+...-.+|...||--+
T Consensus 13 ~~MS~eEI~~er~eL~~~LdP~l 35 (49)
T PF08621_consen 13 ASMSPEEIEEEREELLESLDPKL 35 (49)
T ss_pred HhCCHHHHHHHHHHHHHhCCHHH
Confidence 57999999999999999998643
No 52
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=51.44 E-value=12 Score=28.41 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHh---hcCceEEeeeCCee
Q psy10907 18 SGAVVMLTLDLE---ENQCMRIKILGDCY 43 (72)
Q Consensus 18 n~lf~~FD~l~~---~~~v~KiktiGD~Y 43 (72)
|=+|..||++++ +|++.- .+||+.
T Consensus 199 NPlye~fD~lLeI~~~yDVtl--SLGDgl 225 (423)
T TIGR00190 199 NPLYKNFDYILEIAKEYDVTL--SLGDGL 225 (423)
T ss_pred CchHHHHHHHHHHHHHhCeee--eccCCc
Confidence 459999999877 667654 688865
No 53
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=49.86 E-value=45 Score=22.87 Aligned_cols=42 Identities=33% Similarity=0.279 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..|++.+... .--||+.+||. +.||..
T Consensus 59 ~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iGd~----~~Lp~~ 102 (221)
T cd00475 59 KRPKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDL----SLLPES 102 (221)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh----hhCCHH
Confidence 4688898777777777777776542 23589999994 456654
No 54
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=49.70 E-value=50 Score=19.06 Aligned_cols=29 Identities=7% Similarity=-0.136 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcCceEEeeeCCeeeEeeCC
Q psy10907 20 AVVMLTLDLEENQCMRIKILGDCYYCVSGL 49 (72)
Q Consensus 20 lf~~FD~l~~~~~v~KiktiGD~Ym~v~Gl 49 (72)
=|..|-+-+.+||++ .||-|..-+++-+-
T Consensus 8 nf~afk~was~ygve-fktngsqtlaii~~ 36 (79)
T PF09061_consen 8 NFNAFKEWASKYGVE-FKTNGSQTLAIIKN 36 (79)
T ss_dssp -HHHHHHHHHTTT-E-EEEETTEEEEEETT
T ss_pred cHHHHHHHHHHhCeE-EecCCceEEEeecC
Confidence 388999999999987 47999999998763
No 55
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=48.51 E-value=14 Score=29.20 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHh---hcCceEEeeeCCee
Q psy10907 18 SGAVVMLTLDLE---ENQCMRIKILGDCY 43 (72)
Q Consensus 18 n~lf~~FD~l~~---~~~v~KiktiGD~Y 43 (72)
|=+|+.||++|+ +|+|.- .+||+.
T Consensus 352 NplYe~FD~ileI~k~YDVtl--SLGDGL 378 (607)
T PRK09284 352 NFLYTHFEEICEIMAAYDVSF--SLGDGL 378 (607)
T ss_pred CcHHHHHHHHHHHHHHhCeee--eccCCc
Confidence 459999999988 455543 578854
No 56
>PF07342 DUF1474: Protein of unknown function (DUF1474); InterPro: IPR009942 This entry is represented by Bacteriophage PT1028, Orf16. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.
Probab=47.83 E-value=29 Score=21.33 Aligned_cols=30 Identities=3% Similarity=0.024 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc-CceEE
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN-QCMRI 36 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~-~v~Ki 36 (72)
.....|++.+|.-+...||.+++++ .++|-
T Consensus 58 RI~n~Q~~dL~~~Ylkefd~li~kF~eiEKa 88 (100)
T PF07342_consen 58 RIQNTQTIDLMHMYLKEFDELIEKFKEIEKA 88 (100)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999876 57764
No 57
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=47.72 E-value=14 Score=20.13 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=14.1
Q ss_pred hhcCCHHHHHHHHHHHH
Q psy10907 5 EEEVEEEEKRRMVSGAV 21 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf 21 (72)
...++|++|++.||+++
T Consensus 40 ~~~ld~~~vl~~L~~lq 56 (56)
T PF04405_consen 40 EKGLDPEEVLEELNALQ 56 (56)
T ss_pred HcCCCHHHHHHHHHHcC
Confidence 45689999999999864
No 58
>PTZ00458 acyl CoA binding protein; Provisional
Probab=46.85 E-value=5.2 Score=23.89 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=15.8
Q ss_pred HHHHhhcCceEEeeeCCee
Q psy10907 25 TLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 25 D~l~~~~~v~KiktiGD~Y 43 (72)
|....-|+.||.-|.|||-
T Consensus 24 d~~L~lYalyKQAt~G~c~ 42 (90)
T PTZ00458 24 EIKLDLYKYYKQSTVGNCN 42 (90)
T ss_pred HHHHHHHHHHhhhccCCCC
Confidence 5566778999999999984
No 59
>PLN02444 HMP-P synthase
Probab=46.60 E-value=15 Score=29.06 Aligned_cols=24 Identities=17% Similarity=-0.004 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHh---hcCceEEeeeCCee
Q psy10907 18 SGAVVMLTLDLE---ENQCMRIKILGDCY 43 (72)
Q Consensus 18 n~lf~~FD~l~~---~~~v~KiktiGD~Y 43 (72)
|=+|+.||++++ +|+|.- .+||+.
T Consensus 357 NPlYe~FD~ileI~k~YDVtl--SLGDGL 383 (642)
T PLN02444 357 NFAYEHWDDILDICNQYDIAL--SIGDGL 383 (642)
T ss_pred CchHHHHHHHHHHHHHhCeee--eccCCc
Confidence 459999999887 566544 678864
No 60
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=46.33 E-value=16 Score=27.80 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHh---hcCceEEeeeCCee
Q psy10907 18 SGAVVMLTLDLE---ENQCMRIKILGDCY 43 (72)
Q Consensus 18 n~lf~~FD~l~~---~~~v~KiktiGD~Y 43 (72)
|=+|..||++++ +|+|.- .+||+.
T Consensus 202 NPlye~fD~lLeI~~~yDVtl--SLGDgl 228 (431)
T PRK13352 202 NPLYEHFDYLLEILKEYDVTL--SLGDGL 228 (431)
T ss_pred CchHHHHHHHHHHHHHhCeee--eccCCc
Confidence 459999999887 567654 678864
No 61
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=46.21 E-value=66 Score=19.49 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHHH
Q psy10907 14 RRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIG 69 (72)
Q Consensus 14 v~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~ 69 (72)
+++...+.....+.+.+++..||+.| .+-++-+..-.++ ..+||++++.
T Consensus 4 ~si~~~iv~~v~~~a~~~~~~kV~~V---~l~iG~ls~V~pe----~L~f~f~~~~ 52 (113)
T PF01155_consen 4 LSIAQSIVEIVEEEAEENGAKKVTKV---RLEIGELSGVEPE----ALRFAFEVLA 52 (113)
T ss_dssp HHHHHHHHHHHHHHHHCTT-SEEEEE---EEEEETTS---HH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEE---EEEECCcccCCHH----HHHHHHHHHh
Confidence 36777888888999999999999998 7777766544333 5566766553
No 62
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.71 E-value=58 Score=22.68 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHH-HhhcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLD-LEENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l-~~~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+|+||-.+++-+-..|+.. ..++| -||+.|||- +.||..
T Consensus 69 kR~~~Ev~~Lm~l~~~~l~~~~~~~~~-irir~iG~~----~~Lp~~ 110 (242)
T PRK14838 69 NRPSDEVAALMSLLLDSIEEETFMKNN-IRFRIIGDI----AKLPEE 110 (242)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHcC-cEEEEEeCh----hhCCHH
Confidence 467888877777777777653 33444 499999984 556654
No 63
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.64 E-value=11 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCC
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGD 41 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD 41 (72)
.+.+.+|++.-|+++|+++-.-=-.-=+.+||++|-
T Consensus 154 ~~~~geelfe~lDe~F~rLip~E~gki~~~vk~VGg 189 (315)
T COG4030 154 ASLSGEELFEKLDELFSRLIPSEVGKIVESVKAVGG 189 (315)
T ss_pred ccccHHHHHHHHHHHHhhcCHHHHHHHHHhhhhccC
Confidence 456778888888888887433111112456666653
No 64
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=44.47 E-value=40 Score=25.41 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=22.9
Q ss_pred HHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHH
Q psy10907 25 TLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYN 59 (72)
Q Consensus 25 D~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~ 59 (72)
|++-++|++| .++++=++++|++..+.++...
T Consensus 359 ~rLree~~IY---~v~sGRi~vaGl~~~ni~~va~ 390 (396)
T COG1448 359 DRLREEFGIY---LVASGRINVAGLNTSNIDYVAK 390 (396)
T ss_pred HHHHHhccEE---EecCCeeeeccCChhhHHHHHH
Confidence 3344455555 4688899999999998877554
No 65
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.20 E-value=68 Score=22.21 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhh--cCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEE--NQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~--~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..|++.... -.--||+.|||. +.||..
T Consensus 62 ~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~----~~Lp~~ 105 (233)
T PRK14841 62 KRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRK----EGLPEK 105 (233)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCh----hhCCHH
Confidence 467888877777666667665543 134589999993 567754
No 66
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=41.77 E-value=19 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.019 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhcCceEE-eeeCCee
Q psy10907 18 SGAVVMLTLDLEENQCMRI-KILGDCY 43 (72)
Q Consensus 18 n~lf~~FD~l~~~~~v~Ki-ktiGD~Y 43 (72)
|=+|+.||++++-..-|.| -.+||++
T Consensus 200 Nply~~fd~lleI~k~yDvtlSLGDgl 226 (432)
T COG0422 200 NPLYEHFDELLEIFKEYDVTLSLGDGL 226 (432)
T ss_pred CchhhhHHHHHHHHHHhCeeeeccCCC
Confidence 4599999999984433322 2578864
No 67
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=41.48 E-value=82 Score=19.20 Aligned_cols=47 Identities=4% Similarity=0.230 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHH
Q psy10907 15 RMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMI 68 (72)
Q Consensus 15 ~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~ 68 (72)
++-..+.....+.+.++|..||+.| .+.++-+..-.++ ..+||++++
T Consensus 5 si~~~iv~~v~~~a~~~~~~~V~~V---~l~iG~ls~V~p~----~L~f~f~~~ 51 (114)
T PRK03681 5 TLCQRALELIEQQAAKHGAKRVTGV---WLKIGAFSCVETS----SLAFCFDLV 51 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEE---EEEEcCccccCHH----HHHHHHHHH
Confidence 5556677777778899999999998 6666655443333 556777654
No 68
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.20 E-value=75 Score=21.99 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..|+...... .--||+.+||- +.||..
T Consensus 63 ~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~----~~Lp~~ 106 (233)
T PRK14833 63 KRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDL----EGFSKE 106 (233)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCh----hhCCHH
Confidence 4678888777666666666544432 24599999993 557654
No 69
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=41.15 E-value=5.1 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
.+....++.++-.+=..|+--+..-.+.+++|+||.+
T Consensus 35 ~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~ 71 (82)
T PRK08172 35 YADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADIC 71 (82)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHH
Confidence 3566677777777778888777777788999999864
No 70
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=40.54 E-value=85 Score=19.11 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHHH
Q psy10907 15 RMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIG 69 (72)
Q Consensus 15 ~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~ 69 (72)
++-..++..-.+.+.+++..||+.| .+-++-+..-.++ ..+||++++.
T Consensus 5 si~~~iv~~v~~~a~~~~~~rV~~V---~l~iG~ls~v~pe----~L~f~f~~~~ 52 (113)
T PRK12380 5 SLCQSAVEIIQRQAEQHDVKRVTAV---WLEIGALSCVEES----AVRFSFEIVC 52 (113)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEE---EEEEcCccccCHH----HHHHHHHHHh
Confidence 5566777777778889999999998 7777766544333 5667776653
No 71
>PF08987 DUF1892: Protein of unknown function (DUF1892); InterPro: IPR015080 Proteins in this entry, which are synthesised by Saccharomycetes, adopt a structure consisting of a four-stranded beta-sheet, with strand order beta2-beta1-beta4-beta3, and two alpha-helices, with an overall topology of beta-beta-alpha-beta-beta-alpha. They have no known function []. ; PDB: 1N6Z_A.
Probab=40.41 E-value=94 Score=19.55 Aligned_cols=35 Identities=6% Similarity=-0.022 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CceEEeeeCCeeeEe
Q psy10907 12 EKRRMVSGAVVMLTLDLEEN--QCMRIKILGDCYYCV 46 (72)
Q Consensus 12 evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~Ym~v 46 (72)
+-+..||.-|..||+-+.-. |--|-+.=.|+.+++
T Consensus 49 ~~~d~lN~wFDkFDEeIciPNEGhIKYEI~SDGLVVl 85 (115)
T PF08987_consen 49 DEFDELNEWFDKFDEEICIPNEGHIKYEIGSDGLVVL 85 (115)
T ss_dssp T-HHHHHHHHHHHHHHHHTT--S-EEEEEETTTEEEE
T ss_pred chHHHHHHHHHhhcceeecCCCCceEEEecCCcEEEE
Confidence 45688999999999977643 444544445655544
No 72
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.97 E-value=82 Score=22.08 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCCe
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGDC 42 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~ 42 (72)
+.+++||-.+++-+...|+...... .--+|+.+||.
T Consensus 73 ~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~viG~~ 110 (253)
T PRK14836 73 LRPADEVSALMELFLKALDREVDKLHRNGIRVRFIGDR 110 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4678898888887777777655532 24578999994
No 73
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=37.91 E-value=88 Score=21.60 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHh---hcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLE---ENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~---~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++=+-..|++... ++| -||+.||| .+.||..
T Consensus 58 ~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~-irvr~iGd----~~~Lp~~ 101 (226)
T TIGR00055 58 KRPKEEVDFLMELFEKKLDREVKELHRYN-VRIRIIGD----LSLLSKE 101 (226)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEeC----hhhCCHH
Confidence 45778876666665556665443 344 49999999 3567754
No 74
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.91 E-value=90 Score=21.54 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHh---hcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLE---ENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~---~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..|+..+. +++ -||+.|||. +.||..
T Consensus 52 ~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~-i~vr~iG~~----~~Lp~~ 95 (229)
T PRK10240 52 NRPAQEVSALMELFVWALDSEVKSLHRHN-VRLRIIGDT----SRFNSR 95 (229)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHCC-cEEEEEeCh----hhCCHH
Confidence 45778887777766666666554 344 499999984 446653
No 75
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.72 E-value=88 Score=21.88 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+|+||-.+++-+-..|+..+... .--||+.|||- +.||..
T Consensus 68 ~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~----~~Lp~~ 111 (239)
T PRK14839 68 RRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRR----DRLPDG 111 (239)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh----hhCCHH
Confidence 4678888666665555555544432 23488999994 567654
No 76
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=37.64 E-value=37 Score=19.52 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=31.4
Q ss_pred chhhhcCCHHHHHHHHHHHH---------HHHHHHHhhcCceEEee-eCCeee
Q psy10907 2 KEEEEEVEEEEKRRMVSGAV---------VMLTLDLEENQCMRIKI-LGDCYY 44 (72)
Q Consensus 2 ~~~~~~~~p~evv~~Ln~lf---------~~FD~l~~~~~v~Kikt-iGD~Ym 44 (72)
.|+.+.+++.|+...|..-+ ..|-++..+.|+.+..| -|..|.
T Consensus 20 ~Ee~e~lsa~~If~~L~k~~~~~l~~~~~~~FGriL~~~gi~~khT~~Gn~Y~ 72 (73)
T PF12990_consen 20 GEEGEWLSAAEIFERLQKKSPAALRGSNPNHFGRILQKLGIPRKHTRKGNVYL 72 (73)
T ss_pred CccceeecHHHHHHHHHHhCccccccCCHHHHHHHHHHcCCCccccCCCCEee
Confidence 47889999999998888754 46888888888765443 355553
No 77
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=37.48 E-value=11 Score=21.20 Aligned_cols=10 Identities=0% Similarity=0.102 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q psy10907 15 RMVSGAVVML 24 (72)
Q Consensus 15 ~~Ln~lf~~F 24 (72)
.+|+.+|+.|
T Consensus 63 diLd~IFs~F 72 (73)
T PF12631_consen 63 DILDNIFSNF 72 (73)
T ss_dssp HHHHHHHCTS
T ss_pred HHHHHHHHhh
Confidence 4677777665
No 78
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=37.07 E-value=1e+02 Score=19.05 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHH
Q psy10907 15 RMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMI 68 (72)
Q Consensus 15 ~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~ 68 (72)
++-..+...-.+.+.+++..||..| .+.++-+..-.++ ..+||++++
T Consensus 5 si~~~il~~v~~~a~~~~~~rV~~V---~l~IG~ls~V~pe----~L~faf~~~ 51 (124)
T PRK00762 5 SMACEIVEAVIDTAEKNNATEVTEV---TLEIGRLTMLNPE----QLRFMLDVL 51 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEE---EEEECCccccCHH----HHHHHHHHH
Confidence 5667777888888899999999888 6777665444333 566776654
No 79
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.74 E-value=92 Score=21.87 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..|++..... .--||+.|||- +.||..
T Consensus 81 ~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~----~~Lp~~ 124 (250)
T PRK14840 81 SRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDL----SKLPQE 124 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh----hhCCHH
Confidence 4678888766666666666655431 24579999993 557754
No 80
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=36.69 E-value=55 Score=18.60 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=23.9
Q ss_pred eCCeeeEeeCCCCCCchHHHHHHHHHHHHHH
Q psy10907 39 LGDCYYCVSGLPISRPNHAYNCVNMGLEMIG 69 (72)
Q Consensus 39 iGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~~ 69 (72)
-|+..+.+.|+|.......+.++++-.++..
T Consensus 36 sg~~~l~vtGI~~~~l~s~rdI~~LI~eLr~ 66 (69)
T PF07865_consen 36 SGRVELTVTGISTSALNSSRDIVRLIAELRA 66 (69)
T ss_pred CCcEEEEEcCcCHHHcCCHHHHHHHHHHHHH
Confidence 4677899999998877778888777666543
No 81
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=34.70 E-value=59 Score=23.07 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhc-CceEEeeeCCee
Q psy10907 17 VSGAVVMLTLDLEEN-QCMRIKILGDCY 43 (72)
Q Consensus 17 Ln~lf~~FD~l~~~~-~v~KiktiGD~Y 43 (72)
+++++.-++.++.+| ++-++.+||..|
T Consensus 8 ~~ei~~~l~~l~~~~p~~v~~~~iG~S~ 35 (300)
T cd06246 8 LNEIYSWIEFITERHSDMLEKIHIGSSF 35 (300)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecccCC
Confidence 567888888888877 788888999776
No 82
>KOG0817|consensus
Probab=34.24 E-value=10 Score=24.48 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.0
Q ss_pred HHHHhhcCceEEeeeCCee
Q psy10907 25 TLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 25 D~l~~~~~v~KiktiGD~Y 43 (72)
|.++.-|++||.-|.|||=
T Consensus 26 ee~L~lYglyKQAt~G~~~ 44 (142)
T KOG0817|consen 26 EELLKLYGLYKQATVGDCN 44 (142)
T ss_pred HHHHHHHHHHHhhccCCCC
Confidence 4556678999999999853
No 83
>PRK07117 acyl carrier protein; Validated
Probab=34.20 E-value=7.8 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 11 EEKRRMVSGAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 11 ~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
-+.+.++..+=..|+--+..-...+++|+||+.
T Consensus 40 lD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v 72 (79)
T PRK07117 40 MDRAEIVIMTLESLSLKIPLVEFAGAKNIGELA 72 (79)
T ss_pred HHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHH
Confidence 445566666666666666666678899998863
No 84
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=33.68 E-value=1.1e+02 Score=18.56 Aligned_cols=47 Identities=11% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHHH
Q psy10907 15 RMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMI 68 (72)
Q Consensus 15 ~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m~ 68 (72)
++...++..-.+.+.+++..||+.| ++-++-+..-.++ ..+||++.+
T Consensus 5 sia~~iv~~v~~~a~~~~~~~V~~V---~l~iG~ls~V~p~----~L~faf~~~ 51 (115)
T TIGR00100 5 SLAEAMLEIVEEQAEKHQAKKVTRV---TLEIGELSCVNPS----QLQFAFEVV 51 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEE---EEEEccccccCHH----HHHHHHHHH
Confidence 5556677777778889999999888 6666655443333 455666554
No 85
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=33.36 E-value=79 Score=19.24 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcCceEEeeeCCe
Q psy10907 19 GAVVMLTLDLEENQCMRIKILGDC 42 (72)
Q Consensus 19 ~lf~~FD~l~~~~~v~KiktiGD~ 42 (72)
.+....|...+.+++-||+..+++
T Consensus 31 ~vi~Ei~~aL~~reLIKVkvl~~~ 54 (97)
T COG1534 31 GVIKEIDRALEARELIKVKVLQNA 54 (97)
T ss_pred HHHHHHHHHHHhCCcEEEEeeccc
Confidence 466778888888888888888664
No 86
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.67 E-value=1.2e+02 Score=21.12 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhh--cCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEE--NQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~--~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+|+||=.+++-+-..+++..+. -.--||+.|||- +.||..
T Consensus 67 ~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~----~~Lp~~ 110 (241)
T PRK14842 67 KRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSR----KKLTRT 110 (241)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh----hhCCHH
Confidence 457788766666555555555443 134688899994 456654
No 87
>KOG1412|consensus
Probab=32.54 E-value=1.3e+02 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHHHH
Q psy10907 25 TLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEM 67 (72)
Q Consensus 25 D~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al~m 67 (72)
|.+++.| ||-.+.|+=.-+|||...+.+++..+.+-+..-
T Consensus 366 ~~li~~h---~vyLl~~GRInisGLN~~NveyVAkAIde~Vr~ 405 (410)
T KOG1412|consen 366 DHLIENH---KVYLLSDGRINISGLNMKNVEYVAKAIDETVRA 405 (410)
T ss_pred HHHHHhc---eEEEecCCcEeeeccccccHHHHHHHHHHHHHh
Confidence 4445544 455578888999999999999988887766543
No 88
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=31.65 E-value=1.9e+02 Score=20.44 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeC
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSG 48 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~G 48 (72)
+..+|-+.....+++|...-+.+.++|.----.=||-+|++|.
T Consensus 144 d~~~~ydt~~~I~~l~~~l~~~~~~~G~L~fylGGDNi~~v~p 186 (246)
T PF05165_consen 144 DEESPYDTYLEIEDLYAKLMKYLEKYGSLAFYLGGDNIMAVCP 186 (246)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHTTT---EEEETTEEEEE-T
T ss_pred cccChHHHHHHHHHHHHHHHHHHHhcCCEEEEecCceEEEECC
Confidence 4677888888899999998888888987776666899999883
No 89
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=31.47 E-value=1.3e+02 Score=18.46 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=29.9
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEee-eCCeeeEeeCCCC
Q psy10907 4 EEEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKI-LGDCYYCVSGLPI 51 (72)
Q Consensus 4 ~~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~Kikt-iGD~Ym~v~Glp~ 51 (72)
+..++++.++...|+.+....=+.+. ..+.|.+ +|..++.+.|...
T Consensus 41 ~~s~~t~~di~~vl~~~~~~~~~~l~--~G~sV~~glg~~slsv~G~~~ 87 (124)
T PF14848_consen 41 EGSTLTRADIEAVLNALKDEMIEALM--NGYSVNLGLGYFSLSVKGVFE 87 (124)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHh--CCCEEEcCCEEEEEEEEeccc
Confidence 35678999999999887765544333 3455554 4445566778765
No 90
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=31.34 E-value=34 Score=15.56 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q psy10907 17 VSGAVVMLTL 26 (72)
Q Consensus 17 Ln~lf~~FD~ 26 (72)
|+.+|..||.
T Consensus 2 l~~~F~~~D~ 11 (31)
T PF13405_consen 2 LREAFKMFDK 11 (31)
T ss_dssp HHHHHHHH-T
T ss_pred HHHHHHHHCC
Confidence 5677888775
No 91
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.18 E-value=1.4e+02 Score=21.30 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHh--h--cCceEEeeeCCeeeEeeCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLE--E--NQCMRIKILGDCYYCVSGLPI 51 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~--~--~~v~KiktiGD~Ym~v~Glp~ 51 (72)
+.+|+||-.+++-+-..|..++. . ..--||+.||| .+.||.
T Consensus 100 ~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~irir~iGd----~~~Lp~ 144 (275)
T PRK14835 100 SRSPAEVETLMNLFEREARRMAVDPRIHANRVRVRAIGR----HDGFPP 144 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhchhhhhhCCeEEEEecC----hhhCCH
Confidence 46788887777777677776654 1 23568999998 356665
No 92
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=31.15 E-value=63 Score=24.02 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhcC------ceEEeeeC
Q psy10907 18 SGAVVMLTLDLEENQ------CMRIKILG 40 (72)
Q Consensus 18 n~lf~~FD~l~~~~~------v~KiktiG 40 (72)
+++|.+||+...++. +-||=|-|
T Consensus 82 E~l~~qfd~~~~k~~~~~~~~~vkIFTSG 110 (358)
T COG1244 82 ENLINQFDEAYSKYEGKFDEFVVKIFTSG 110 (358)
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEccc
Confidence 347889999998877 55555554
No 93
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.00 E-value=1.4e+02 Score=20.92 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCCeeeEeeCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGDCYYCVSGLPI 51 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~Ym~v~Glp~ 51 (72)
+.+++||-.+++-+-..|+..+... .--+|+.+||. +.||.
T Consensus 81 ~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~viG~~----~~Lp~ 123 (251)
T PRK14830 81 KRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDT----DRLPE 123 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCh----hhCCH
Confidence 4678888777766666666665531 24689999995 44664
No 94
>PHA03302 envelope glycoprotein L; Provisional
Probab=30.67 E-value=8.4 Score=27.27 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcCceEEeeeCCee
Q psy10907 19 GAVVMLTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 19 ~lf~~FD~l~~~~~v~KiktiGD~Y 43 (72)
.+|+.-|..|.+|+.+|++..+|.+
T Consensus 136 ~IyTCV~dvCr~ydl~rL~Yt~~iF 160 (253)
T PHA03302 136 TIYTCVDDVCRQYDLERLTYTNDIF 160 (253)
T ss_pred ceEEehhhhhhhcChhheecccchh
Confidence 3799999999999999999988876
No 95
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=30.10 E-value=1.5e+02 Score=19.22 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEee
Q psy10907 9 EEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVS 47 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~ 47 (72)
++.++...|++|-..++. ......|..+|+.|--..
T Consensus 25 ~~~~v~~~l~~L~~~y~~---~~~gl~l~~~~~~y~l~t 60 (159)
T PF04079_consen 25 SEDEVEEALEELQEEYNE---EDRGLELVEVGGGYRLQT 60 (159)
T ss_dssp -HHHHHHHHHHHHHHHHH---CT-SEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHhcc---CCCCEEEEEECCEEEEEE
Confidence 566666666666666632 234677788899997665
No 96
>PF15208 Rab15_effector: Rab15 effector
Probab=29.80 E-value=39 Score=23.63 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcCceEEeeeC-Cee--eEeeCCCCCC
Q psy10907 20 AVVMLTLDLEENQCMRIKILG-DCY--YCVSGLPISR 53 (72)
Q Consensus 20 lf~~FD~l~~~~~v~KiktiG-D~Y--m~v~Glp~~~ 53 (72)
==++||++.+... .|| ||| +.+.|.|..+
T Consensus 141 ~k~rfeKLeEFC~-----lIG~DClgLFiiFGvpgkp 172 (236)
T PF15208_consen 141 NKNRFEKLEEFCN-----LIGEDCLGLFIIFGVPGKP 172 (236)
T ss_pred cccHHHHHHHHHH-----hhchhhheeeeEecCCCCc
Confidence 3457888777654 356 554 7788998764
No 97
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=29.67 E-value=76 Score=22.63 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhc-CceEEeeeCCee
Q psy10907 17 VSGAVVMLTLDLEEN-QCMRIKILGDCY 43 (72)
Q Consensus 17 Ln~lf~~FD~l~~~~-~v~KiktiGD~Y 43 (72)
+++++.-++.++.++ +.-++.+||..|
T Consensus 5 ~~ei~~~l~~L~~~~p~~v~l~~iG~S~ 32 (300)
T cd03872 5 LEEIESWMFYMNKTHSDLVHLFSIGKSY 32 (300)
T ss_pred HHHHHHHHHHHHHHCCCceEEEEeeecC
Confidence 567888888888766 777888888765
No 98
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=29.59 E-value=70 Score=20.32 Aligned_cols=21 Identities=0% Similarity=0.009 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy10907 10 EEEKRRMVSGAVVMLTLDLEE 30 (72)
Q Consensus 10 p~evv~~Ln~lf~~FD~l~~~ 30 (72)
...+-..||++|+.|...-+.
T Consensus 52 tnkik~flndlftefskfhns 72 (143)
T PF06198_consen 52 TNKIKEFLNDLFTEFSKFHNS 72 (143)
T ss_pred HHHHHHHHHhHHHHHHHhhhc
Confidence 456778999999999876543
No 99
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.57 E-value=1.6e+02 Score=20.43 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHh---hcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLE---ENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~---~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..|.+... ++| -||+.|||- +.||..
T Consensus 65 ~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~-irvr~iGd~----~~Lp~~ 108 (230)
T PRK14837 65 NRTDSEIEHLMFLIADYLSSEFNFYKKNN-IKIIVSGDI----ESLSEE 108 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCC-cEEEEEcCh----hhCCHH
Confidence 45777776655555444544333 445 489999984 556653
No 100
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=29.33 E-value=1e+02 Score=18.42 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhcCceEEeeeCCe
Q psy10907 19 GAVVMLTLDLEENQCMRIKILGDC 42 (72)
Q Consensus 19 ~lf~~FD~l~~~~~v~KiktiGD~ 42 (72)
.+...+|...+.|.+-||+...++
T Consensus 30 ~vi~ei~~aL~~hELIKVkvl~~~ 53 (95)
T TIGR00253 30 GVIKEIEQALEHRELIKVKVATED 53 (95)
T ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Confidence 467788888889999999876543
No 101
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.98 E-value=53 Score=24.02 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHHHH
Q psy10907 9 EEEEKRRMVSGAVVML 24 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~F 24 (72)
+..|+++|||.-|..|
T Consensus 145 ES~eIirm~N~aFde~ 160 (324)
T COG0435 145 ESAEIIRMFNSAFDEF 160 (324)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5578999999555544
No 102
>KOG1602|consensus
Probab=28.95 E-value=1.7e+02 Score=21.05 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhh-----cCceEEeeeCCe
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEE-----NQCMRIKILGDC 42 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~-----~~v~KiktiGD~ 42 (72)
+.+|+||=.+.+=.=..++.+.++ ...-||+.|||-
T Consensus 95 kRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdl 135 (271)
T KOG1602|consen 95 KRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDL 135 (271)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcch
Confidence 468889877777666777776664 123478889983
No 103
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.54 E-value=1.7e+02 Score=20.43 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||-.+++-+-..+++..... .--||+.+||. +.||..
T Consensus 73 ~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viGd~----~~Lp~~ 116 (249)
T PRK14834 73 SRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGER----AGLEAD 116 (249)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcCh----hhCCHH
Confidence 3567777666665555555554432 34589999993 556654
No 104
>PF03139 AnfG_VnfG: Vanadium/alternative nitrogenase delta subunit; InterPro: IPR004349 The nitrogenase complex 1.18.6.1 from EC catalyses the conversion of molecular nitrogen to ammonia (nitrogen fixation). The complex is hexameric, consisting of 2 alpha, 2 beta, and 2 delta subunits. This family represents the delta subunit of a group of nitrogenases that do not utilise molybdenum (Mo) as a cofactor, but instead use either vanadium (V nitrogenases), or iron (alternative nitrogenases). ; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0055114 oxidation-reduction process
Probab=27.42 E-value=95 Score=19.45 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHh
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDLE 29 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~~ 29 (72)
..++..|+-.+++.+..+.|.+.-
T Consensus 76 ~~~~k~ei~~lm~~lk~rld~ltI 99 (112)
T PF03139_consen 76 NEMSKDEIKSLMQGLKERLDYLTI 99 (112)
T ss_pred HHCCHHHHHHHHHHHHHHHhHhhh
Confidence 468899999999999999998764
No 105
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=26.54 E-value=1.6e+02 Score=20.94 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhcCceEEeeeCCeeeEee-CCCC
Q psy10907 15 RMVSGAVVMLTLDLEENQCMRIKILGDCYYCVS-GLPI 51 (72)
Q Consensus 15 ~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~-Glp~ 51 (72)
.+=.++|..+=+.+.++|.+-.-+=||-||+++ |+..
T Consensus 29 ~lQsrLya~L~~~~~~~ggl~Ff~RgDN~iavtNGI~~ 66 (254)
T PRK02240 29 ALQSRLYADLAQQFGARDGYVFFTRFDNMIAVTNGIDL 66 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEeccCceEEEEcCCCCH
Confidence 344568888889999999999988899999997 6643
No 106
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=26.52 E-value=98 Score=23.92 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCC
Q psy10907 10 EEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 10 p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
|.++.+.+.+-...|+.-......=+|..|+|...-+.|+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~ 47 (497)
T TIGR03324 5 LDKAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGV 47 (497)
T ss_pred HHHHHHHHHHHHHhcCCCcceeEEEEEEEEeceEEEEEccCCC
Confidence 4455566666666666555544567888999999999998754
No 107
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=26.30 E-value=87 Score=22.28 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhc-CceEEeeeCCee
Q psy10907 17 VSGAVVMLTLDLEEN-QCMRIKILGDCY 43 (72)
Q Consensus 17 Ln~lf~~FD~l~~~~-~v~KiktiGD~Y 43 (72)
+.++..-++.++.+| +.-++..||..|
T Consensus 7 ~~ei~~~l~~L~~~~p~~v~l~~iG~S~ 34 (298)
T cd06247 7 MDEIYNWMDQIKEKYSELVSQHYLGCTY 34 (298)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeceECc
Confidence 456777777777766 677888888665
No 108
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.08 E-value=66 Score=19.33 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.5
Q ss_pred CchhhhcCCHHHHHHHHHH
Q psy10907 1 MKEEEEEVEEEEKRRMVSG 19 (72)
Q Consensus 1 ~~~~~~~~~p~evv~~Ln~ 19 (72)
|+++-.-++|+|++.-+|+
T Consensus 1 ~~~~~~~~~peEl~eY~~e 19 (91)
T COG4013 1 MEEIIDVKNPEELIEYLNE 19 (91)
T ss_pred CchhhhhcCHHHHHHHHHh
Confidence 5677778899999988874
No 109
>PF12339 DNAJ_related: DNA-J related protein ; InterPro: IPR021059 This domain family is approximately 130 amino acids in length and contains a conserved YYLD sequence motif. The proteins have a C-terminal DNA-J domain PF00226 from PFAM and most of the sequences are annotated as DNA-J related proteins, other annotations include: DnaJ-class molecular chaperon and formate dehydrogenase; but there is currently no publications to support these annotations.
Probab=25.83 E-value=73 Score=20.22 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.2
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q psy10907 6 EEVEEEEKRRMVSGAVVML 24 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~F 24 (72)
+..+..+|-++||+-+++|
T Consensus 113 ~~t~~~~V~~LL~~FW~r~ 131 (132)
T PF12339_consen 113 EETSEAEVERLLNSFWQRY 131 (132)
T ss_pred hhcCHHHHHHHHHHHHHhc
Confidence 4678899999999998876
No 110
>PHA03159 hypothetical protein; Provisional
Probab=25.64 E-value=1.5e+02 Score=19.35 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHhhcCc---eEEeeeCCeeeEee
Q psy10907 10 EEEKRRMVSGA---VVMLTLDLEENQC---MRIKILGDCYYCVS 47 (72)
Q Consensus 10 p~evv~~Ln~l---f~~FD~l~~~~~v---~KiktiGD~Ym~v~ 47 (72)
..-+|+-++.+ |+.|..+.-.+.+ .++|+.|.+.|...
T Consensus 24 ~dsivraihsvi~qynkfe~lmpdfs~c~hdr~kf~geai~ltt 67 (160)
T PHA03159 24 QDSIVRAIHSVIHQYNKFEALMPDFSICAHDRIKFTGEAILLTT 67 (160)
T ss_pred hhHHHHHHHHHHHHHhhHHHhCCCchhhhhhhhcccceeEEEec
Confidence 34456666554 5667777665543 68999999998765
No 111
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=25.54 E-value=1.9e+02 Score=21.17 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHHHHH------HHHhhcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLT------LDLEENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD------~l~~~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||=.+++=+-..+. ..+.++|+ ||+.|||- ..||..
T Consensus 78 kRp~~EV~~Lm~L~~~~l~~~~~~~~~l~~~~i-rirviGd~----~~Lp~~ 124 (322)
T PTZ00349 78 NRSPEEIHFLFYLNLLILINEDFFFKFIKDNKI-KIKIIGNL----SYINDA 124 (322)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHCCC-EEEEEeCh----hhCCHH
Confidence 4567776443332222222 23345555 99999993 556654
No 112
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=25.50 E-value=1e+02 Score=21.87 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhc-CceEEeeeCCee
Q psy10907 17 VSGAVVMLTLDLEEN-QCMRIKILGDCY 43 (72)
Q Consensus 17 Ln~lf~~FD~l~~~~-~v~KiktiGD~Y 43 (72)
++++...+|.++.++ +.-++.+||..|
T Consensus 9 ~~ei~~~l~~L~~~~p~~v~~~~iG~S~ 36 (301)
T cd03870 9 LDEIYDFMDLLVAEHPNLVSKLQIGRSY 36 (301)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecccCC
Confidence 466777788887766 566777888665
No 113
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=25.35 E-value=1.3e+02 Score=18.09 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhcCceEEeeeC
Q psy10907 19 GAVVMLTLDLEENQCMRIKILG 40 (72)
Q Consensus 19 ~lf~~FD~l~~~~~v~KiktiG 40 (72)
.+...+|...+.|.+-||+..+
T Consensus 32 ~vi~ei~~aL~~hELIKvkv~~ 53 (97)
T PRK10343 32 GVLAEIEQALEHHELIKVKIAT 53 (97)
T ss_pred HHHHHHHHHHHHCCcEEEEecC
Confidence 4677888888889988888553
No 114
>PF14682 SPOB_ab: Sporulation initiation phospho-transferase B, C-terminal; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.24 E-value=1.5e+02 Score=18.34 Aligned_cols=24 Identities=4% Similarity=0.068 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcC
Q psy10907 9 EEEEKRRMVSGAVVMLTLDLEENQ 32 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~l~~~~~ 32 (72)
.-+.+....+.+|+.|+..++.++
T Consensus 34 ~D~~L~~w~~~ff~~l~~~v~~~~ 57 (115)
T PF14682_consen 34 YDQKLTTWMRTFFSLLEEHVDPEG 57 (115)
T ss_dssp GHHHHHHHHHHHHHHHHHHB-SSS
T ss_pred hHHHHHHHHHHHHHHHHHhcCccc
Confidence 346788889999999999998763
No 115
>PRK12449 acyl carrier protein; Provisional
Probab=25.09 E-value=16 Score=20.36 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCe
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDC 42 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~ 42 (72)
.+.....+.++-.+-..|+--+....+.+++|+||.
T Consensus 36 g~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l 71 (80)
T PRK12449 36 AVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDL 71 (80)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHH
Confidence 345556666777777777766666666677777764
No 116
>PF15151 RGCC: Response gene to complement 32 protein family
Probab=25.07 E-value=96 Score=19.60 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy10907 12 EKRRMVSGAVVMLTLDLEEN 31 (72)
Q Consensus 12 evv~~Ln~lf~~FD~l~~~~ 31 (72)
+.-.-|+++...||.+++.+
T Consensus 16 ~~~~eL~d~L~EFd~Vvedf 35 (121)
T PF15151_consen 16 EDDDELSDLLCEFDAVVEDF 35 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33467999999999999866
No 117
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.92 E-value=1.9e+02 Score=20.33 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+.+++||=.+++-+-..+....... .--||+.|||- +.||..
T Consensus 77 ~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iGd~----~~Lp~~ 120 (253)
T PRK14832 77 QRPIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDL----SALPKS 120 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCc----hhCCHH
Confidence 4567777544443333444433321 24589999993 567764
No 118
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=24.84 E-value=79 Score=23.49 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEe
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCV 46 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v 46 (72)
++++|.+++..||++ ..+||+=++-.+.|-+...
T Consensus 230 ~~~~~~~li~~lN~i-------~g~~GvGr~d~ve~r~vg~ 263 (394)
T TIGR00032 230 VSLDPVELILEANEI-------AGKHGVGRIDIIENRIIGL 263 (394)
T ss_pred ccCCHHHHHHHHHHH-------HHhcccCcccccccccccc
Confidence 567788888888875 5679999999999877544
No 119
>PRK05828 acyl carrier protein; Validated
Probab=24.84 E-value=13 Score=21.58 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeE
Q psy10907 9 EEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYC 45 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~ 45 (72)
....++.++..+=..|+--+..-.+.+++|+||.+=.
T Consensus 38 DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~ 74 (84)
T PRK05828 38 DSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILE 74 (84)
T ss_pred CHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHH
Confidence 3445555666666666655555556788888886533
No 120
>PF13026 DUF3887: Protein of unknown function (DUF3887)
Probab=24.57 E-value=75 Score=19.31 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHH-----HHHHHHHH
Q psy10907 8 VEEEEKRRMVSG-----AVVMLTLD 27 (72)
Q Consensus 8 ~~p~evv~~Ln~-----lf~~FD~l 27 (72)
-+++++|++||+ ++..||.-
T Consensus 9 ~~Aeevi~~~N~~dy~~v~~~~d~~ 33 (101)
T PF13026_consen 9 QKAEEVIDLLNEKDYDKVHEKYDEK 33 (101)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHhHH
Confidence 467899999987 66666654
No 121
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=24.38 E-value=2.5e+02 Score=22.61 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=39.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCc--eEEeeeCC---eeeEeeCCCCCC
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQC--MRIKILGD---CYYCVSGLPISR 53 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v--~KiktiGD---~Ym~v~Glp~~~ 53 (72)
+|+++|..+-..++++...+.....+.++ .++++.|- -.+.+.|++...
T Consensus 12 tEElPa~~~~~~~~~l~~~~~~~L~~~~i~~~~i~~f~TPRRLal~i~~l~~~q 65 (691)
T TIGR00211 12 TEELPAKALRSLATQFADKLTAELNKAGLEHGNVEIFATPRRLAVLVKDLAELQ 65 (691)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHcCCCcCceEEEEcCcEeEEEecCccccC
Confidence 68999999999999999999999987665 57777774 356677887643
No 122
>PHA01623 hypothetical protein
Probab=24.29 E-value=15 Score=19.96 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhcCceEEeee
Q psy10907 18 SGAVVMLTLDLEENQCMRIKIL 39 (72)
Q Consensus 18 n~lf~~FD~l~~~~~v~Kikti 39 (72)
.+++..+|..|.++|+.+-+.|
T Consensus 22 eel~~~Ld~y~~~~g~~rSe~I 43 (56)
T PHA01623 22 KDLKTRLKVYCAKNNLQLTQAI 43 (56)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH
Confidence 3588999999999987654433
No 123
>KOG4206|consensus
Probab=23.37 E-value=44 Score=23.23 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=30.1
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeC
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSG 48 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~G 48 (72)
.|+..-.|+-+-|..||+.|+.+++---.-.-|--|-+.....+
T Consensus 18 nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~ 61 (221)
T KOG4206|consen 18 NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKE 61 (221)
T ss_pred cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecC
Confidence 56778889999999999999988774333233344555554443
No 124
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=23.37 E-value=1.1e+02 Score=23.72 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCC
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPIS 52 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~ 52 (72)
+..|.++...+.+-...|+.......+=+|..++|.+.-+.|+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~i~~v~gl~~~ 47 (502)
T PRK13343 2 KSNADEWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDA 47 (502)
T ss_pred CCCHHHHHHHHHHHHhcCCCcceeEEeeEEEEEeCCEEEEeCCCCC
Confidence 3567777777777777776555444566888999999999998753
No 125
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=23.16 E-value=2.7e+02 Score=22.39 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=40.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCc--eEEeeeCC---eeeEeeCCCCCCc
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQC--MRIKILGD---CYYCVSGLPISRP 54 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v--~KiktiGD---~Ym~v~Glp~~~~ 54 (72)
+|+++|..+-..++++...|.....++++ .+|++.|- --+.+.|++....
T Consensus 10 tEElPa~~~~~a~~~l~~~~~~~L~~~~l~~~~i~~f~TPRRLav~v~~l~~~q~ 64 (682)
T PRK01233 10 TEELPAKALRKAAEQLAERITKELKEAGLSFGSIKVFATPRRLAVLVEGLAEKQP 64 (682)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHcCCCcCceEEEEcCcEeeeeecCCcccCC
Confidence 68999999999999999999999998775 57777774 3566778876543
No 126
>PF15585 Imm46: Immunity protein 46
Probab=22.49 E-value=2.2e+02 Score=18.20 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCceEEeee-CCeeeEeeCCCCCCchHHHHHHH
Q psy10907 9 EEEEKRRMVSGAVVMLTLDLEENQCMRIKIL-GDCYYCVSGLPISRPNHAYNCVN 62 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~l~~~~~v~Kikti-GD~Ym~v~Glp~~~~~ha~~~~~ 62 (72)
.+++++.-|+...+.+|.- |+-+++.. |..|+-++|++..+..-+..++.
T Consensus 22 ~~~~~~~~i~~~i~~~~~~----~~~~L~~~NG~~~l~~~g~~NHr~~~~~eii~ 72 (129)
T PF15585_consen 22 KLEKIIQEIQERISELDWG----GLVDLRAMNGSYFLHFGGLSNHRGQEAPEIIE 72 (129)
T ss_pred hHHHHHHHHHHHHHhcCCC----CeEEEEecCCcEEEEEccccCCCccchHHHHH
Confidence 4445544444444444433 45555544 67788899999887765555543
No 127
>PHA01748 hypothetical protein
Probab=22.49 E-value=73 Score=17.30 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhcCceE
Q psy10907 19 GAVVMLTLDLEENQCMR 35 (72)
Q Consensus 19 ~lf~~FD~l~~~~~v~K 35 (72)
++...+|.++.++|+.+
T Consensus 12 el~~eld~~a~~~g~~R 28 (60)
T PHA01748 12 DLLELLDRYAIKHGLNR 28 (60)
T ss_pred HHHHHHHHHHHHhCCCH
Confidence 57788999999888654
No 128
>COG4702 Uncharacterized conserved protein [Function unknown]
Probab=22.33 E-value=1.1e+02 Score=20.51 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=16.1
Q ss_pred CceEEeeeCCe---eeEeeCCCCCCchHH
Q psy10907 32 QCMRIKILGDC---YYCVSGLPISRPNHA 57 (72)
Q Consensus 32 ~v~KiktiGD~---Ym~v~Glp~~~~~ha 57 (72)
|...|+.=|+. -+++||+|.. .||-
T Consensus 120 G~fpI~vk~ag~iG~v~VSGlpqr-eDHn 147 (168)
T COG4702 120 GGFPIQVKGAGVIGVVTVSGLPQR-EDHN 147 (168)
T ss_pred CceeEEEeccceEEEEEecCCCcc-cchh
Confidence 34556555643 4788999987 5553
No 129
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=22.19 E-value=1.6e+02 Score=18.99 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=20.8
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHhhcC
Q psy10907 4 EEEEVEEEEKRRMVSGAVVMLTLDLEENQ 32 (72)
Q Consensus 4 ~~~~~~p~evv~~Ln~lf~~FD~l~~~~~ 32 (72)
+....+++++..+...+.++||.-.++..
T Consensus 62 ~~~~~t~~e~~~lI~~yl~R~DeEleql~ 90 (155)
T PF11176_consen 62 DKKPFTLEEIHELIERYLHRFDEELEQLK 90 (155)
T ss_dssp T-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45678999999999999999999877543
No 130
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=21.99 E-value=1.7e+02 Score=18.50 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHH--HHHHHHHHHhhcCceEEeeeCC----eeeEee
Q psy10907 8 VEEEEKRRMVSG--AVVMLTLDLEENQCMRIKILGD----CYYCVS 47 (72)
Q Consensus 8 ~~p~evv~~Ln~--lf~~FD~l~~~~~v~KiktiGD----~Ym~v~ 47 (72)
.+|+++...+++ .+..||.-+... +-++.+|+ .|+.++
T Consensus 51 ~s~e~v~~vi~d~e~~~~w~~~~~~~--~vie~~~~~~~i~~~~~~ 94 (195)
T cd08876 51 ASIEAFLALLRDTESYPQWMPNCKES--RVLKRTDDNERSVYTVID 94 (195)
T ss_pred CCHHHHHHHHhhhHhHHHHHhhcceE--EEeecCCCCcEEEEEEEe
Confidence 489999999998 788899876544 33556665 455544
No 131
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=21.93 E-value=1e+02 Score=15.64 Aligned_cols=18 Identities=17% Similarity=-0.093 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhcCceE
Q psy10907 18 SGAVVMLTLDLEENQCMR 35 (72)
Q Consensus 18 n~lf~~FD~l~~~~~v~K 35 (72)
++++..+|.++.+.|+-+
T Consensus 11 ~el~~~L~~ls~~t~i~~ 28 (44)
T PF12651_consen 11 KELYEKLKELSEETGIPK 28 (44)
T ss_pred HHHHHHHHHHHHHHCCCH
Confidence 467888888888877654
No 132
>KOG2650|consensus
Probab=21.88 E-value=1.4e+02 Score=22.65 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CceEEeeeCCee
Q psy10907 12 EKRRMVSGAVVMLTLDLEEN-QCMRIKILGDCY 43 (72)
Q Consensus 12 evv~~Ln~lf~~FD~l~~~~-~v~KiktiGD~Y 43 (72)
+-...|++++.-.|.++.+| ++-.+.+||..|
T Consensus 119 ~~Y~~le~I~~~l~~l~~~~P~~v~~~~IG~s~ 151 (418)
T KOG2650|consen 119 ERYHSLEEIYEWLDNLAERYPDLVSLIHIGRSY 151 (418)
T ss_pred HHhcCHHHHHHHHHHHHHhCCCceEEEEccccc
Confidence 34567899999999999999 578888999886
No 133
>PF09114 MotA_activ: Transcription factor MotA, activation domain; InterPro: IPR015198 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the N-terminal (activation) domain of MotA factors that binds sigma70. The N-terminal domain adopts an almost completely alpha-helical topology, with five alpha-helices and a short, two-stranded, beta-ribbon. Four alpha helices (alpha1, alpha3, alpha4 and alpha5) are amphipathic and pack their hydrophobic surfaces around the central helix alpha2 [].; PDB: 1BJA_B 1I1S_A.
Probab=21.56 E-value=2e+02 Score=17.46 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=24.7
Q ss_pred CHHHHHHHH------HHHHHHHHHHHhhcCceEEeeeCCeeeEee
Q psy10907 9 EEEEKRRMV------SGAVVMLTLDLEENQCMRIKILGDCYYCVS 47 (72)
Q Consensus 9 ~p~evv~~L------n~lf~~FD~l~~~~~v~KiktiGD~Ym~v~ 47 (72)
+|.+|...| +.+++..-.++.+-=++| -||+|+...
T Consensus 32 t~~ev~e~l~~~~~~~~V~SNIGvLIKkglIEK---SGDGlv~T~ 73 (96)
T PF09114_consen 32 TASEVREALATEMNKASVNSNIGVLIKKGLIEK---SGDGLVITE 73 (96)
T ss_dssp -HHHHHH-T-TTS-HHHHHHHHHHHHHTTSEEE---ETTEEEE-H
T ss_pred CHHHHHHHHHHHhhhhHHHHhHHHHHHcCcccc---cCCceEEec
Confidence 566776655 557777888887766777 699998765
No 134
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=21.51 E-value=89 Score=15.42 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=12.1
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q psy10907 7 EVEEEEKRRMVSGAVVMLT 25 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD 25 (72)
.-.|.+++...-++|+.+-
T Consensus 16 ~~qP~Di~~F~a~yF~~L~ 34 (38)
T PF02197_consen 16 REQPDDILQFAADYFEKLE 34 (38)
T ss_dssp HH--S-HHHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHH
Confidence 3478999999999886653
No 135
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=21.48 E-value=1.4e+02 Score=18.57 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHh
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDLE 29 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~~ 29 (72)
..++..|+-.++..+..+.|.+.-
T Consensus 73 ~~~~kdei~~l~~~lk~rl~~ltI 96 (109)
T TIGR02929 73 EDMTKDEIKTLMQALHEKMDHLTI 96 (109)
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhc
Confidence 578899999999999999998764
No 136
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=21.39 E-value=2.6e+02 Score=21.78 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred HHHhhc--CceEEeeeCCee-----------------eEeeCCCCCC
Q psy10907 26 LDLEEN--QCMRIKILGDCY-----------------YCVSGLPISR 53 (72)
Q Consensus 26 ~l~~~~--~v~KiktiGD~Y-----------------m~v~Glp~~~ 53 (72)
+++.+| |++-|-+|||+| +++-|-|-.+
T Consensus 213 ~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPFN~ 259 (505)
T PF10113_consen 213 ELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPFNR 259 (505)
T ss_pred HHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCccc
Confidence 345555 799999999998 7888888554
No 137
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=21.36 E-value=3.3e+02 Score=21.33 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=40.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcCc--eEEeeeCC---eeeEeeCCCCCC
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEENQC--MRIKILGD---CYYCVSGLPISR 53 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~~v--~KiktiGD---~Ym~v~Glp~~~ 53 (72)
+|+++|.-+-..++++...|-......++ .+|++.|- -.+.+.|++...
T Consensus 7 tEElPa~~l~~~~~~~~~~~~~~l~~~~l~~~~i~~f~TPRRlav~i~~l~~~q 60 (548)
T PF02092_consen 7 TEELPARFLKKALEQLKELIEKELKDNRLSFGSIKVFGTPRRLAVLIEGLAEKQ 60 (548)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHCCCCcCceEEeeccceeeeeecCccccC
Confidence 68999999999999999999999997765 57887774 356677887643
No 138
>PF10015 DUF2258: Uncharacterized protein conserved in archaea (DUF2258); InterPro: IPR017140 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.84 E-value=1.9e+02 Score=16.84 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHHH-HHHHHHhhcCceE
Q psy10907 6 EEVEEEEKRRMVSGAVV-MLTLDLEENQCMR 35 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~-~FD~l~~~~~v~K 35 (72)
.+++|+++++..-+|=. .||.+.++.++-|
T Consensus 26 ~~v~~~ei~ra~aeLNk~ly~~lv~~~~i~K 56 (75)
T PF10015_consen 26 GKVPPEEIVRAAAELNKKLYEKLVNKMKIDK 56 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 46788998877666543 4788887887766
No 139
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=20.76 E-value=1.2e+02 Score=18.10 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCceE
Q psy10907 7 EVEEEEKRRMVSGAVVMLTLDLEENQCMR 35 (72)
Q Consensus 7 ~~~p~evv~~Ln~lf~~FD~l~~~~~v~K 35 (72)
.+++.+...+++++|.+|.--.+.++..+
T Consensus 38 ~~~~dda~elm~~f~~~F~Vd~~~f~~~~ 66 (111)
T PF07377_consen 38 GLDGDDAEELMEDFFERFNVDLSDFDFDR 66 (111)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCccCHHH
Confidence 46789999999999999977776666543
No 140
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=20.64 E-value=1.3e+02 Score=17.47 Aligned_cols=22 Identities=5% Similarity=-0.103 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCc
Q psy10907 12 EKRRMVSGAVVMLTLDLEENQC 33 (72)
Q Consensus 12 evv~~Ln~lf~~FD~l~~~~~v 33 (72)
.-..|.+.|+..|+.++.++++
T Consensus 41 ky~~m~~~L~~~~~~la~~~~i 62 (129)
T PF09687_consen 41 KYYDMINKLWKYFEELAKKYNI 62 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3457888899999999998876
No 141
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.64 E-value=89 Score=20.73 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHhh
Q psy10907 10 EEEKRRMVSGAVV-MLTLDLEE 30 (72)
Q Consensus 10 p~evv~~Ln~lf~-~FD~l~~~ 30 (72)
+.-+.-...+||+ .||+++..
T Consensus 53 ~~gIcpvr~~ly~~~F~ELIRQ 74 (189)
T PF10211_consen 53 ETGICPVREELYSQCFDELIRQ 74 (189)
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 3345566778888 89998874
No 142
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=20.54 E-value=19 Score=22.09 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=21.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhc--CceEEeeeCC-eee
Q psy10907 5 EEEVEEEEKRRMVSGAVVMLTLDLEEN--QCMRIKILGD-CYY 44 (72)
Q Consensus 5 ~~~~~p~evv~~Ln~lf~~FD~l~~~~--~v~KiktiGD-~Ym 44 (72)
+++..-.....+|+.+.....+-...+ -+.+++.+|| .|+
T Consensus 107 A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~~~g~~~~~ 149 (153)
T cd00907 107 CEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLIDKMGLQNYL 149 (153)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 344444455566666666555555433 2556667776 454
No 143
>PRK13907 rnhA ribonuclease H; Provisional
Probab=20.36 E-value=2e+02 Score=16.98 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcCceEEeeeCCeeeEeeCCCCCCchHHHHHHHHHH
Q psy10907 17 VSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGL 65 (72)
Q Consensus 17 Ln~lf~~FD~l~~~~~v~KiktiGD~Ym~v~Glp~~~~~ha~~~~~~Al 65 (72)
+.+++..++.+..++....++.+ |.+...+|..+++.|+
T Consensus 87 ~~~l~~~~~~l~~~f~~~~~~~v----------~r~~N~~Ad~LA~~a~ 125 (128)
T PRK13907 87 FAPLLEEALQYIKSFDLFFIKWI----------PSSQNKVADELARKAI 125 (128)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc----------CchhchhHHHHHHHHH
Confidence 45677777888888877776666 3444566766666664
No 144
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfG, represents the delta subunit of the V-containing (vanadium) alternative nitrogenase. It is homologous to AnfG, the delta subunit of the Fe-only nitrogenase.
Probab=20.27 E-value=1.6e+02 Score=18.39 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHh
Q psy10907 6 EEVEEEEKRRMVSGAVVMLTLDLE 29 (72)
Q Consensus 6 ~~~~p~evv~~Ln~lf~~FD~l~~ 29 (72)
.+++..|+-.++..+..+.|.+.-
T Consensus 73 ~~~~kdei~~l~~~lk~rl~~~tI 96 (109)
T TIGR02930 73 SELDKDQILELVESVKKRLVEITI 96 (109)
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhc
Confidence 578899999999999999998764
No 145
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=20.09 E-value=67 Score=14.18 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=6.2
Q ss_pred HHHHHHHHHH
Q psy10907 17 VSGAVVMLTL 26 (72)
Q Consensus 17 Ln~lf~~FD~ 26 (72)
|.+.|..+|.
T Consensus 1 l~~~F~~~D~ 10 (25)
T PF13202_consen 1 LKDAFQQFDT 10 (25)
T ss_dssp HHHHHHHHTT
T ss_pred CHHHHHHHcC
Confidence 4556777664
No 146
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=20.07 E-value=1.1e+02 Score=17.60 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy10907 9 EEEEKRRMVSGAVVMLTL 26 (72)
Q Consensus 9 ~p~evv~~Ln~lf~~FD~ 26 (72)
+-+|||.||. ||...|.
T Consensus 9 trqevvemlq-lfdlmdt 25 (77)
T PF13050_consen 9 TRQEVVEMLQ-LFDLMDT 25 (77)
T ss_pred cHHHHHHHHH-HHHHhcc
Confidence 5688999884 5555553
No 147
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=20.06 E-value=23 Score=20.65 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.0
Q ss_pred HHHHHhhcCceEEeeeCCee
Q psy10907 24 LTLDLEENQCMRIKILGDCY 43 (72)
Q Consensus 24 FD~l~~~~~v~KiktiGD~Y 43 (72)
-|....-|+.||.-|.|||-
T Consensus 21 ~~~~L~lYalyKQAt~G~~~ 40 (85)
T cd00435 21 NEEKLQLYSLYKQATVGDCN 40 (85)
T ss_pred HHHHHHHHHHHHHhccCCCC
Confidence 35566678999999999985
Done!