RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10907
(72 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase
catalytic domain.
Length = 184
Score = 54.6 bits (132), Expect = 4e-11
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 28 LEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72
L+++ ++K +GD Y SGLP P HA M L+M+ AI+
Sbjct: 46 LDKHGVYKVKTIGDAYMAASGLPEPSPAHAQTLAEMALDMLEAIK 90
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic
and prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions
to bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 51.8 bits (125), Expect = 6e-10
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 6 EEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGL 65
E + EE +++ +E + K +GD V GLP + +HA V L
Sbjct: 17 ERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAHEDHAERAVRAAL 76
Query: 66 EMIGAIR 72
EM A+
Sbjct: 77 EMQEALA 83
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 40.3 bits (95), Expect = 9e-06
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 28 LEENQCMRIKILGDCYYCVSGLPISR-PNHAYNCVNMGLEMI 68
++ + ++K +GD Y SGLP +HA + L+M+
Sbjct: 74 IDRHGGYKVKTIGDAYMVASGLPEEALVDHAELIADEALDMV 115
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be
divided into two major groups; the mononucleotidyl
cyclases (MNC's) and the diguanylate cyclases (DGC's).
The MNC's, which include the adenylate cyclases (AC's)
and the guanylate cyclases (GC's), have a conserved
cyclase homology domain (CHD), while the DGC's have a
conserved GGDEF domain, named after a conserved motif
within this subgroup. Their products, cyclic guanylyl
and adenylyl nucleotides, are second messengers that
play important roles in eukaryotic signal transduction
and prokaryotic sensory pathways.
Length = 133
Score = 37.0 bits (86), Expect = 1e-04
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 28 LEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72
+ + ++IK +GD + VSG +H V +M A+
Sbjct: 39 IRRSGDLKIKTIGDEFMVVSG-----LDHPAAAVAFAEDMREAVS 78
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 27.5 bits (61), Expect = 0.37
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 2 KEEEEEVEEEEKR 14
+EEEEE EE EK+
Sbjct: 96 QEEEEEEEENEKQ 108
>gnl|CDD|222514 pfam14054, DUF4249, Domain of unknown function (DUF4249). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 279 and 365 amino
acids in length. There are two completely conserved
residues (C and G) that may be functionally important.
Length = 286
Score = 27.3 bits (61), Expect = 0.65
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 10 EEEKRRMVSGAVVMLTLDLEENQCMRIKI-LGDCYYCVSGLPISRPNHAYN 59
+ VSGA V L ++ + + + YY + P Y
Sbjct: 53 DNTPPPGVSGATVTLYVNGQGVEYPFTEPPGTGGYYTSNNFRP-VPGDTYR 102
>gnl|CDD|239514 cd03422, YedF, YedF is a bacterial SirA-like protein of unknown
function. SirA (also known as UvrY, and YhhP)
belongs to a family of a two-component response
regulators that controls secondary metabolism and
virulence. The other member of this two-component
system is a sensor kinase called BarA which
phosphorylates SirA. A variety of microorganisms have
similar proteins, all of which contain a common CPxP
sequence motif in the N-terminal region. YhhP is
suggested to be important for normal cell division and
growth in rich nutrient medium. Moreover, despite a
low primary sequence similarity, the YccP structure
closely resembles the non-homologous C-terminal
RNA-binding domain of E. coli translation initiation
factor IF3. The signature CPxP motif serves to
stabilize the N-terminal helix as part of the N-capping
box and might be important in mRNA-binding.
Length = 69
Score = 25.1 bits (55), Expect = 1.8
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 35 RIKILGDCYYCVSGLPISRPNHAYNCV 61
++++ DC ++ +PI NH Y +
Sbjct: 28 ILEVISDCPQSINNIPIDARNHGYKVL 54
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 24.7 bits (54), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 1 MKEEEEEVEEEEKRRM 16
+EEEE+ EEEK R
Sbjct: 163 EREEEEKAAEEEKARE 178
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 24.1 bits (53), Expect = 4.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 2 KEEEEEVEEEE 12
K+EEEE EEE+
Sbjct: 70 KKEEEEEEEED 80
Score = 23.7 bits (52), Expect = 6.6
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 2 KEEEEEVEEEE 12
+++EEE EEEE
Sbjct: 69 EKKEEEEEEEE 79
>gnl|CDD|151173 pfam10669, Phage_Gp23, Protein gp23 (Bacteriophage A118). This
is the highly conserved family of the major tail
subunit protein.
Length = 121
Score = 23.9 bits (51), Expect = 8.0
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 1 MKEEEEEVEEEEKRR 15
MKEE +++E E ++R
Sbjct: 48 MKEERDKMETEREKR 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0857 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,708,165
Number of extensions: 280950
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 18
Length of query: 72
Length of database: 10,937,602
Length adjustment: 42
Effective length of query: 30
Effective length of database: 9,074,734
Effective search space: 272242020
Effective search space used: 272242020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)