RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10907
(72 letters)
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 81.5 bits (202), Expect = 2e-21
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 29 EENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72
EN C+RIKILGDCYYCVSGLP +R +HA+ CV MG++MI AI
Sbjct: 73 AENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAIS 116
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 60.7 bits (148), Expect = 2e-13
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 29 EENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72
+++ +I++ GD Y VSG+P RP+H + L+M
Sbjct: 49 DQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALADFALDMTNVAA 92
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide,
structural genomics, structural genomics conso SGC,
CGMP biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 56.5 bits (137), Expect = 7e-12
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 29 EENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72
E +++ +GD Y GL HA M L+M+
Sbjct: 53 GELDVYKVETIGDAYCVAGGLHKESDTHAVQIALMALKMMELSD 96
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 52.4 bits (126), Expect = 3e-10
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 36 IKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72
++ +GD Y VSGLP +HA + ++ L+M+
Sbjct: 65 VETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAG 101
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase,
dimethylarsenic, lyase, membrane, transmembrane; 2.55A
{Chlamydomonas reinhardtii} PDB: 3et6_B
Length = 190
Score = 50.8 bits (122), Expect = 1e-09
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 36 IKILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72
++ +GD Y V + + +HA + L M
Sbjct: 56 VETIGDAYMVVCNVTVPCDDHADVLLEFALRMHEEAS 92
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 38.8 bits (91), Expect = 3e-05
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 11/48 (22%)
Query: 36 IKILGDCYYCVSGLPI-----------SRPNHAYNCVNMGLEMIGAIR 72
IK +G Y +GL + H V ++G +
Sbjct: 67 IKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLD 114
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl
cyclase, lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 37.5 bits (88), Expect = 6e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 37 KILGDCYYCVSGLPISRPNHAYNCVNMGLEMIGAIR 72
+ +GD + G P S+ + A V G+EM A+R
Sbjct: 61 EFMGDGILVLFGAPTSQQDDALRAVACGVEMQLALR 96
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 34.1 bits (78), Expect = 0.001
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 36 IKILGDCYYCVSGLPISRPNHAYNCVNMGLEM 67
+K +GD + S P + A L
Sbjct: 57 VKTVGDSFMIASKSPFAAVQLAQELQLCFLHH 88
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 31.7 bits (73), Expect = 0.008
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 37 KILGDCYYCVSGLPISR--PNHAYNCVNMGLEMIGAIR 72
K +GDC G P ++ A V+MG+ M ++
Sbjct: 56 KFVGDCVMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMK 93
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 31.0 bits (71), Expect = 0.015
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 37 KILGDCYYCVSGLP--ISRPNHAYNCVNMGLEMIGAIR 72
K +GD + G P +S + +M+ A+
Sbjct: 74 KFVGDAIMALYGAPEEMSPSEQVRRAIATARQMLVALE 111
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 29.9 bits (67), Expect = 0.038
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 6 EEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCVNMGL 65
E V EE + + L DL IK +GD V P + L
Sbjct: 231 EVVSAEELGHLAG-RLAGLARDLTAPPVWFIKTIGDAVMLVCPDPAPLLDTV-------L 282
Query: 66 EMIGAIR 72
+++ +
Sbjct: 283 KLVEVVD 289
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 0.51
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 20/55 (36%)
Query: 17 VSG---AVVMLTLDLEE-------NQCMRI-----KILGDCYYCVSGLPISRPNH 56
VSG ++ L L L + +Q RI K+ + LP++ P H
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRF----LPVASPFH 428
Score = 25.8 bits (56), Expect = 1.2
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 17 VSG---AVVMLTLDLEENQCMRIKIL 39
+G A+ +T L + +I I+
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDII 1880
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 26.2 bits (58), Expect = 0.87
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 7/30 (23%)
Query: 40 GDCYYCVSGLPISRPNHAYNCVNMGLEMIG 69
G C C+ G RP+ C G
Sbjct: 94 GICRNCLVG----RPDF---CETGEFGEAG 116
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair,
DNA-binding, endonuclease, metal-BIND excision repair,
DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus
solfataricus}
Length = 346
Score = 24.9 bits (54), Expect = 2.7
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 2 KEEEEEVEEEEKRRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSGLPISRPNHAYNCV 61
K ++V E K ++ +++ L + Q + I IL Y G+ P A +
Sbjct: 192 KLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKII 251
Query: 62 N 62
Sbjct: 252 K 252
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis
protein, epimerase, antibiot biosynthesis protein,
structural genomics; 2.00A {Escherichia coli} SCOP:
d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Length = 307
Score = 24.2 bits (53), Expect = 4.4
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 14 RRMVSGAVVMLTLDLEENQCMRIKILGDCYYCVSG 48
R + ++ +T+ + +NQ ++ I G
Sbjct: 267 RALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHA 301
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,152,025
Number of extensions: 57232
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 24
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)