BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10910
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 33/42 (78%)
Query: 52 MESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
M G G V CGVLGLRKWQFDVWS+DVTLANHME+GG G
Sbjct: 128 MRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAG 169
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 30/35 (85%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V CGVLGLRKWQFDVWSNDVT ANHME+GG G +
Sbjct: 137 VHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 171
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 33/42 (78%)
Query: 52 MESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
M G G V CGVLGLRKWQFDVWS+DVTLANHME+GG G
Sbjct: 120 MRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAG 161
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 30/35 (85%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V CGVLGLRKWQFDVWSNDVT ANHME+GG G +
Sbjct: 129 VHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 163
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 33/42 (78%)
Query: 52 MESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
M G G V CGVLGLRKWQFDVWS+DVTLANHME+GG G
Sbjct: 128 MRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAG 169
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 30/35 (85%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V CGVLGLRKWQFDVWSNDVT ANHME+GG G +
Sbjct: 137 VHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 171
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGV 91
G V+ GV+G +K Q+D+W + V +A+ M+S GV
Sbjct: 133 GPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGV 165
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGV 57
V+ GV+G +K Q+D+W N V A+ M+S GV
Sbjct: 135 VIAGVIGAQKPQYDIWGNTVNVASRMDSTGV 165
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGV 91
G V+ GV+G +K Q+D+W + V +A+ M+S GV
Sbjct: 134 GPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGV 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGV 57
V+ GV+G +K Q+D+W N V A+ M+S GV
Sbjct: 136 VIAGVIGAQKPQYDIWGNTVNVASRMDSTGV 166
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGV 91
G V+ GV+G +K Q+D+W + V +A+ M+S GV
Sbjct: 130 GPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGV 162
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 3 GRMTSLLLTIWNLAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGV 57
G++ ++ +N RV V+ GV+G +K Q+D+W N V A+ M+S GV
Sbjct: 108 GKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGV 162
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMES 88
G V+ GV+G R++++ VW D V +A+ MES
Sbjct: 111 GPVVAGVVGSRRFRYCVWGDAVNVASRMES 140
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 14 NLAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMES 54
N RV V+ GV+G R++++ VW + V A+ MES
Sbjct: 100 NPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMES 140
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVP 92
G+V GV+G++ ++ ++ ++VTLAN ES VP
Sbjct: 115 GSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVP 148
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 26 NVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
+V GV+G++ ++ ++ N+VT AN ES VP +
Sbjct: 116 SVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKI 151
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G V+ GV+G + +F ++ D V A+ MES G G
Sbjct: 111 GPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAG 145
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V+ GV+G + +F ++ + V A+ MES G G +
Sbjct: 113 VVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQI 147
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G V+ GV+G + +F ++ D V A+ MES G G
Sbjct: 111 GPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAG 145
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V+ GV+G + +F ++ + V A+ MES G G +
Sbjct: 113 VVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQI 147
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 38 QFDVWSNDVTFANHMESGGVPGNVLCGVLG-----------LRKWQFDV 75
+FD W DV F++ ++ GVP + G R W FD+
Sbjct: 193 KFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDI 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,092,777
Number of Sequences: 62578
Number of extensions: 111862
Number of successful extensions: 244
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 22
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)