Query psy10910
Match_columns 93
No_of_seqs 123 out of 1153
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:40:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3619|consensus 99.5 1.7E-14 3.6E-19 119.0 2.9 66 11-76 199-266 (867)
2 KOG4171|consensus 99.5 1.4E-14 3.1E-19 116.5 2.3 56 15-70 534-589 (671)
3 KOG3619|consensus 99.4 5.3E-14 1.1E-18 116.1 3.7 65 1-65 744-808 (867)
4 KOG4171|consensus 99.4 7E-15 1.5E-19 118.3 -1.9 77 16-93 484-578 (671)
5 KOG3618|consensus 99.3 2.8E-13 6.1E-18 111.0 0.7 69 25-93 406-475 (1318)
6 KOG3618|consensus 99.2 9.5E-12 2.1E-16 102.2 3.2 55 15-69 431-485 (1318)
7 KOG1023|consensus 98.9 8E-10 1.7E-14 87.2 1.8 43 49-91 390-432 (484)
8 PF00211 Guanylate_cyc: Adenyl 98.9 1.8E-09 3.8E-14 73.4 3.1 61 7-67 91-151 (184)
9 PF00211 Guanylate_cyc: Adenyl 98.8 1.5E-09 3.3E-14 73.7 1.7 45 49-93 99-143 (184)
10 KOG1023|consensus 98.8 1.9E-09 4E-14 85.1 1.0 54 14-68 389-442 (484)
11 COG2114 CyaA Adenylate cyclase 98.5 4.6E-08 1E-12 69.8 2.1 40 50-93 135-174 (227)
12 cd07302 CHD cyclase homology d 98.5 9.7E-08 2.1E-12 63.1 3.1 56 14-69 93-148 (177)
13 smart00044 CYCc Adenylyl- / gu 98.5 1.3E-07 2.9E-12 64.9 3.7 55 14-68 128-182 (194)
14 smart00044 CYCc Adenylyl- / gu 98.4 1.3E-07 2.8E-12 64.9 2.4 45 49-93 129-173 (194)
15 cd07302 CHD cyclase homology d 98.4 2E-07 4.4E-12 61.6 2.3 46 48-93 93-138 (177)
16 COG2114 CyaA Adenylate cyclase 98.2 6.2E-07 1.3E-11 64.0 1.7 50 16-69 135-184 (227)
17 cd07556 Nucleotidyl_cyc_III Cl 89.9 0.3 6.6E-06 30.2 2.4 43 50-93 88-130 (133)
18 cd07556 Nucleotidyl_cyc_III Cl 83.4 0.84 1.8E-05 28.1 1.8 45 15-60 87-131 (133)
19 PF06488 L_lac_phage_MSP: Lact 47.6 9.5 0.00021 28.1 1.0 20 70-89 185-205 (301)
20 PF10851 DUF2652: Protein of u 43.9 31 0.00066 22.8 2.8 18 75-92 95-112 (116)
21 PF06345 Drf_DAD: DRF Autoregu 35.4 28 0.00062 14.7 1.1 11 4-14 2-12 (15)
No 1
>KOG3619|consensus
Probab=99.47 E-value=1.7e-14 Score=119.05 Aligned_cols=66 Identities=53% Similarity=0.815 Sum_probs=57.4
Q ss_pred hhhhcceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeEeceee--eccccc
Q psy10910 11 TIWNLAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGVLGLRK--WQFDVW 76 (93)
Q Consensus 11 ~~~~~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~~g~~k--~~ydvw 76 (93)
.+...++||||||+|+|.|||+|++|++||+|++++..|+.|++|+.||+||++..+.+. -.|++-
T Consensus 199 at~~dvnmrvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g~yeve 266 (867)
T KOG3619|consen 199 ATGVDVNMRVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNGEYEVE 266 (867)
T ss_pred HhCCCCceEEEEecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhCCCceee
Confidence 333446999999999999999999999999999999999999999999999999877653 366543
No 2
>KOG4171|consensus
Probab=99.47 E-value=1.4e-14 Score=116.50 Aligned_cols=56 Identities=27% Similarity=0.444 Sum_probs=52.9
Q ss_pred cceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeEeceee
Q psy10910 15 LAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGVLGLRK 70 (93)
Q Consensus 15 ~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~~g~~k 70 (93)
...+|||||+|+|+|||+|.+||+|++||++|+.|++|+++..|++|++|..++++
T Consensus 534 pi~iRiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~ 589 (671)
T KOG4171|consen 534 PIQIRIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRK 589 (671)
T ss_pred ceEEEEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999987753
No 3
>KOG3619|consensus
Probab=99.44 E-value=5.3e-14 Score=116.11 Aligned_cols=65 Identities=31% Similarity=0.536 Sum_probs=61.1
Q ss_pred ChhhhHHHHHhhhhcceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeE
Q psy10910 1 MSGRMTSLLLTIWNLAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGV 65 (93)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~ 65 (93)
|+.-|++....+.+++++|||+..||+++||+|.+||+||+||+++|.|++|++.+.+|+|++..
T Consensus 744 l~~~L~~IN~~SfNnF~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTE 808 (867)
T KOG3619|consen 744 LMHKLDEINRHSFNNFELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTE 808 (867)
T ss_pred HHHHHHhhhHHhhccceeeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecH
Confidence 45678888889999999999999999999999999999999999999999999999999999985
No 4
>KOG4171|consensus
Probab=99.43 E-value=7e-15 Score=118.27 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=61.4
Q ss_pred ceeeeccCCcceEEEeecceeee-eee-----------e-cccc-----cccccccccCcCCcEEEeEeceeeecccccc
Q psy10910 16 AVFRVNRVLSNVLCGVLGLRKWQ-FDV-----------W-SNDV-----TFANHMESGGVPGNVLCGVLGLRKWQFDVWS 77 (93)
Q Consensus 16 ~~~riGihtG~v~~gvlG~~~~~-~dv-----------w-g~~v-----~~a~~mriG~~~G~V~vg~~g~~k~~ydvwg 77 (93)
..++|... |+.++.|-|..... |+- | ...+ ....+||+|+|+|+|++||+|.+.++||+||
T Consensus 484 ~VYKVETI-GDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~ak~v~~p~~~~pi~iRiGIHsG~VvAGVVG~kmPRYCLFG 562 (671)
T KOG4171|consen 484 DVYKVETI-GDAYMVVSGLPDASDYHAEHIADLALGMMEEAKEVVSPVTGEPIQIRIGIHSGPVVAGVVGVKMPRYCLFG 562 (671)
T ss_pred CeEEEeec-cchheeecCCCCCChhHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEEEeccCCeeeeeecccccceeecC
Confidence 46778777 88999998885432 211 1 0111 2356899999999999999999999999999
Q ss_pred chhhHHhhhhcCCCCC
Q psy10910 78 DDVTLANHMESGGVPG 93 (93)
Q Consensus 78 ~~V~~a~~les~g~~g 93 (93)
+|||+||||||.+.|+
T Consensus 563 dTVn~AsrmES~s~p~ 578 (671)
T KOG4171|consen 563 DTVNLASRMESSSVPG 578 (671)
T ss_pred CchhhhhhhhcCCCCc
Confidence 9999999999999986
No 5
>KOG3618|consensus
Probab=99.32 E-value=2.8e-13 Score=110.96 Aligned_cols=69 Identities=41% Similarity=0.699 Sum_probs=36.3
Q ss_pred cceEEEeecceeeeee-eecccccccccccccCcCCcEEEeEeceeeeccccccchhhHHhhhhcCCCCC
Q psy10910 25 SNVLCGVLGLRKWQFD-VWSNDVTFANHMESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93 (93)
Q Consensus 25 G~v~~gvlG~~~~~~d-vwg~~v~~a~~mriG~~~G~V~vg~~g~~k~~ydvwg~~V~~a~~les~g~~g 93 (93)
++.+|.-+|+.|.... -|..+-....+||+|+|+|.|.+|++|.+|+.||+|.+|||+||.|||.|+||
T Consensus 406 HA~ccvEMGLgMI~AirqFd~~r~e~VnMRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag 475 (1318)
T KOG3618|consen 406 HAYCCVEMGLGMIKAIRQFDQERKEMVNMRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAG 475 (1318)
T ss_pred ceeeehhhcchHHHHHHHHHHHhhcccceEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCc
Confidence 4455555555442210 11122223345666666666666666666666666666666666666666554
No 6
>KOG3618|consensus
Probab=99.19 E-value=9.5e-12 Score=102.19 Aligned_cols=55 Identities=45% Similarity=0.794 Sum_probs=52.0
Q ss_pred cceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeEecee
Q psy10910 15 LAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGVLGLR 69 (93)
Q Consensus 15 ~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~~g~~ 69 (93)
.++||||+|||.|+||++|.+++.||+|.++++.|+.|++.+.+|+||+|.-+.+
T Consensus 431 ~VnMRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak 485 (1318)
T KOG3618|consen 431 MVNMRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAGKVHISEATAK 485 (1318)
T ss_pred ccceEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCcceEeeHHHHH
Confidence 4699999999999999999999999999999999999999999999999987654
No 7
>KOG1023|consensus
Probab=98.86 E-value=8e-10 Score=87.17 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=36.6
Q ss_pred cccccccCcCCcEEEeEeceeeeccccccchhhHHhhhhcCCC
Q psy10910 49 ANHMESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGV 91 (93)
Q Consensus 49 a~~mriG~~~G~V~vg~~g~~k~~ydvwg~~V~~a~~les~g~ 91 (93)
..++|+|.|+|++.+|++|.+.++|++||||||+|+||||.|+
T Consensus 390 ~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~ 432 (484)
T KOG1023|consen 390 KLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK 432 (484)
T ss_pred hhheeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC
Confidence 4678888888888888888888888888888888888888875
No 8
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=98.85 E-value=1.8e-09 Score=73.40 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=49.4
Q ss_pred HHHHhhhhcceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeEec
Q psy10910 7 SLLLTIWNLAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGVLG 67 (93)
Q Consensus 7 ~~~~~~~~~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~~g 67 (93)
++.....+...+|||+|+|++.++.+|..+..|++||+.++.|.+++....++.|+++.--
T Consensus 91 ~~~~~~~~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v 151 (184)
T PF00211_consen 91 RLNKESGPPLSVRIGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILVSEEV 151 (184)
T ss_dssp HHHHHHHSS-EEEEEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEEEHHH
T ss_pred ccccccceeeeeeccccccccccccccCcccceeeeehhhhhhHHHHHhhcccccccCHHH
Confidence 3333445667899999999999999998888899999999999999988889999886533
No 9
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=98.82 E-value=1.5e-09 Score=73.73 Aligned_cols=45 Identities=36% Similarity=0.570 Sum_probs=41.4
Q ss_pred cccccccCcCCcEEEeEeceeeeccccccchhhHHhhhhcCCCCC
Q psy10910 49 ANHMESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93 (93)
Q Consensus 49 a~~mriG~~~G~V~vg~~g~~k~~ydvwg~~V~~a~~les~g~~g 93 (93)
..++++|+|+|++.++.+|..+..||+||+.||+|+||++.+.|+
T Consensus 99 ~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~ 143 (184)
T PF00211_consen 99 PLSVRIGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPG 143 (184)
T ss_dssp S-EEEEEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTT
T ss_pred eeeeeccccccccccccccCcccceeeeehhhhhhHHHHHhhccc
Confidence 457899999999999999988999999999999999999998875
No 10
>KOG1023|consensus
Probab=98.77 E-value=1.9e-09 Score=85.11 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=49.6
Q ss_pred hcceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeEece
Q psy10910 14 NLAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGVLGL 68 (93)
Q Consensus 14 ~~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~~g~ 68 (93)
+-+++|||+|+|++++||+|+++++|+.||++++.|.+|++.+. +.|+.+....
T Consensus 389 ~~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~ 442 (484)
T KOG1023|consen 389 EKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAK 442 (484)
T ss_pred hhhheeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHH
Confidence 34699999999999999999999999999999999999999999 9999987554
No 11
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=98.52 E-value=4.6e-08 Score=69.84 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=26.9
Q ss_pred ccccccCcCCcEEEeEeceeeeccccccchhhHHhhhhcCCCCC
Q psy10910 50 NHMESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93 (93)
Q Consensus 50 ~~mriG~~~G~V~vg~~g~~k~~ydvwg~~V~~a~~les~g~~g 93 (93)
.++++|+|+|++.++.+|. ||+||++||+|+|||+..+||
T Consensus 135 l~~riGi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g 174 (227)
T COG2114 135 LRVRIGIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPG 174 (227)
T ss_pred eeEEEEEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCC
Confidence 3466777777777777665 677777777777777666654
No 12
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=98.49 E-value=9.7e-08 Score=63.11 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=49.0
Q ss_pred hcceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeEecee
Q psy10910 14 NLAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGVLGLR 69 (93)
Q Consensus 14 ~~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~~g~~ 69 (93)
+...+|||+|+|++.++.+|.....|++||+.++.|.+|.....+|.|+++.--.+
T Consensus 93 ~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~~~ 148 (177)
T cd07302 93 PPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYE 148 (177)
T ss_pred CCeEEEEEEecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCCEEEECHHHHH
Confidence 45789999999999999999998889999999999999999888999998864443
No 13
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=98.49 E-value=1.3e-07 Score=64.89 Aligned_cols=55 Identities=27% Similarity=0.407 Sum_probs=45.6
Q ss_pred hcceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeEece
Q psy10910 14 NLAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGVLGL 68 (93)
Q Consensus 14 ~~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~~g~ 68 (93)
+...+|||+|+|++.++.+|.....|++||+.++.|.+++....+|.|++|.-..
T Consensus 128 ~~l~~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~ 182 (194)
T smart00044 128 NGLRVRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETY 182 (194)
T ss_pred CCeeEEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHH
Confidence 3468899999999999988888778889999999998888888888888876443
No 14
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=98.43 E-value=1.3e-07 Score=64.94 Aligned_cols=45 Identities=36% Similarity=0.555 Sum_probs=41.7
Q ss_pred cccccccCcCCcEEEeEeceeeeccccccchhhHHhhhhcCCCCC
Q psy10910 49 ANHMESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93 (93)
Q Consensus 49 a~~mriG~~~G~V~vg~~g~~k~~ydvwg~~V~~a~~les~g~~g 93 (93)
..++++|+|+|++.++.+|..+.+||+||+.||+|.||++.+.||
T Consensus 129 ~l~~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g 173 (194)
T smart00044 129 GLRVRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPG 173 (194)
T ss_pred CeeEEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCC
Confidence 468899999999999999998789999999999999999998875
No 15
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=98.38 E-value=2e-07 Score=61.55 Aligned_cols=46 Identities=33% Similarity=0.456 Sum_probs=42.3
Q ss_pred ccccccccCcCCcEEEeEeceeeeccccccchhhHHhhhhcCCCCC
Q psy10910 48 FANHMESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93 (93)
Q Consensus 48 ~a~~mriG~~~G~V~vg~~g~~k~~ydvwg~~V~~a~~les~g~~g 93 (93)
...++++|+|+|++.++.+|..+..|++||+.||+|.||++.+.||
T Consensus 93 ~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~ 138 (177)
T cd07302 93 PPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPG 138 (177)
T ss_pred CCeEEEEEEecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCC
Confidence 3568999999999999999999889999999999999999988765
No 16
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=98.20 E-value=6.2e-07 Score=64.03 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=44.9
Q ss_pred ceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCcEEEeEecee
Q psy10910 16 AVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLCGVLGLR 69 (93)
Q Consensus 16 ~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~V~vg~~g~~ 69 (93)
+++|||||+|+++.+.+|. |++||+++|+|.+++.-..+|.|.+|--..+
T Consensus 135 l~~riGi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~ 184 (227)
T COG2114 135 LRVRIGIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYD 184 (227)
T ss_pred eeEEEEEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeEEEcHHHHH
Confidence 4599999999999999987 9999999999999999999999999764443
No 17
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=89.88 E-value=0.3 Score=30.19 Aligned_cols=43 Identities=40% Similarity=0.601 Sum_probs=35.6
Q ss_pred ccccccCcCCcEEEeEeceeeeccccccchhhHHhhhhcCCCCC
Q psy10910 50 NHMESGGVPGNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93 (93)
Q Consensus 50 ~~mriG~~~G~V~vg~~g~~k~~ydvwg~~V~~a~~les~g~~g 93 (93)
..+++|++.|.+..+..|. +..++.+++.++.|+++.+..+|+
T Consensus 88 ~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~~a~~~ 130 (133)
T cd07556 88 VRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAG 130 (133)
T ss_pred eEEEEEEecccEEEEeccC-CccceEEcHHHHHHHHHHhcCCCC
Confidence 4566788888888888887 788889999999999998877664
No 18
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=83.39 E-value=0.84 Score=28.12 Aligned_cols=45 Identities=33% Similarity=0.516 Sum_probs=34.2
Q ss_pred cceeeeccCCcceEEEeecceeeeeeeecccccccccccccCcCCc
Q psy10910 15 LAVFRVNRVLSNVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGN 60 (93)
Q Consensus 15 ~~~~riGihtG~v~~gvlG~~~~~~dvwg~~v~~a~~mriG~~~G~ 60 (93)
...++||++.|++.....|. ...++.+++..+.+.++..-..++.
T Consensus 87 ~~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~~a~~~~ 131 (133)
T cd07556 87 PVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQ 131 (133)
T ss_pred ceEEEEEEecccEEEEeccC-CccceEEcHHHHHHHHHHhcCCCCC
Confidence 46889999999999888887 6677788888877776655544443
No 19
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.59 E-value=9.5 Score=28.08 Aligned_cols=20 Identities=30% Similarity=0.853 Sum_probs=17.1
Q ss_pred eeccccccchh-hHHhhhhcC
Q psy10910 70 KWQFDVWSDDV-TLANHMESG 89 (93)
Q Consensus 70 k~~ydvwg~~V-~~a~~les~ 89 (93)
..+|++||+.- .+|++|||.
T Consensus 185 ~ieyeiwg~qakdfa~kmesg 205 (301)
T PF06488_consen 185 AIEYEIWGEQAKDFAKKMESG 205 (301)
T ss_pred eEEeehhhhHHHHHHHHhhcc
Confidence 56899999987 599999984
No 20
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=43.93 E-value=31 Score=22.77 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.6
Q ss_pred cccchhhHHhhhhcCCCC
Q psy10910 75 VWSDDVTLANHMESGGVP 92 (93)
Q Consensus 75 vwg~~V~~a~~les~g~~ 92 (93)
++|.||-+|.||--..+|
T Consensus 95 L~G~dVI~aHrlLKN~v~ 112 (116)
T PF10851_consen 95 LAGKDVIEAHRLLKNDVP 112 (116)
T ss_pred hcCchhhHhHHHHcCCCC
Confidence 899999999999876665
No 21
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=35.36 E-value=28 Score=14.65 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=8.5
Q ss_pred hhHHHHHhhhh
Q psy10910 4 RMTSLLLTIWN 14 (93)
Q Consensus 4 ~~~~~~~~~~~ 14 (93)
-|+|++|..+.
T Consensus 2 vmdsllealqt 12 (15)
T PF06345_consen 2 VMDSLLEALQT 12 (15)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHc
Confidence 48899988764
Done!