RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10910
         (93 letters)



>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
           domain. 
          Length = 184

 Score = 58.8 bits (143), Expect = 2e-12
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 59  GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
           G V+ GV+G R+ ++DVW D V LA+ MES GVPG
Sbjct: 109 GPVVAGVIGARRPRYDVWGDTVNLASRMESTGVPG 143



 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 27  VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVL 62
           V+ GV+G R+ ++DVW + V  A+ MES GVPG + 
Sbjct: 111 VVAGVIGARRPRYDVWGDTVNLASRMESTGVPGKIH 146


>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
           Present in two copies in mammalian adenylyl cyclases.
           Eubacterial homologues are known. Two residues (Asn,
           Arg) are thought to be involved in catalysis. These
           cyclases have important roles in a diverse range of
           cellular processes.
          Length = 194

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 59  GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
           G V+ GV+G+R  ++ ++ D V LA+ MES G PG
Sbjct: 139 GPVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPG 173



 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 27  VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLC 63
           V+ GV+G+R  ++ ++ + V  A+ MES G PG +  
Sbjct: 141 VVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQV 177


>gnl|CDD|143636 cd07302, CHD, cyclase homology domain.  Catalytic domains of the
           mononucleotidyl cyclases (MNC's), also called cyclase
           homology domains (CHDs), are part of the class III
           nucleotidyl cyclases. This class includes eukaryotic and
           prokaryotic adenylate cyclases (AC's) and guanylate
           cyclases (GC's). They seem to share a common catalytic
           mechanism in their requirement for two magnesium ions to
           bind the polyphosphate moiety of the nucleotide.
          Length = 177

 Score = 46.8 bits (112), Expect = 9e-08
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 59  GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
           G V+ GV+G  + ++ V  D V LA  +ES   PG
Sbjct: 104 GPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPG 138



 Score = 44.1 bits (105), Expect = 8e-07
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 27  VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLC 63
           V+ GV+G  + ++ V  + V  A  +ES   PG +L 
Sbjct: 106 VVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILV 142


>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
           Class III nucleotidyl cyclases are the largest, most
           diverse group of nucleotidyl cyclases (NC's) containing
           prokaryotic and eukaryotic proteins. They can be divided
           into two major groups; the mononucleotidyl cyclases
           (MNC's) and the diguanylate cyclases (DGC's).  The
           MNC's, which include the adenylate cyclases (AC's) and
           the guanylate cyclases (GC's), have a conserved cyclase
           homology domain (CHD), while the DGC's have a conserved
           GGDEF domain, named after a conserved motif within this
           subgroup. Their products, cyclic guanylyl and adenylyl
           nucleotides, are second messengers that play important
           roles in eukaryotic signal transduction and prokaryotic
           sensory pathways.
          Length = 133

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 59  GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
           G V+ GV+G R  Q+DVW   V LA+ MES    G
Sbjct: 97  GPVVVGVIGSR-PQYDVWGALVNLASRMESQAKAG 130



 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 27  VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVL 62
           V+ GV+G R  Q+DVW   V  A+ MES    G VL
Sbjct: 99  VVVGVIGSR-PQYDVWGALVNLASRMESQAKAGQVL 133


>gnl|CDD|223236 COG0158, Fbp, Fructose-1,6-bisphosphatase [Carbohydrate transport
          and metabolism].
          Length = 326

 Score = 27.7 bits (62), Expect = 0.84
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 2  SGRMTSLLLTIWNLAVFRVNRVLSNVLCGVLGLRKWQ---------FDVWSNDVTFANHM 52
          +  ++++L +I          +    L GVLG    +          DV++N++      
Sbjct: 19 TAELSAVLSSIALAGKEIAREINKAGLAGVLGYSGAENVQGDTQKKLDVFANEILIEALK 78

Query: 53 ESGGVPG 59
            G V G
Sbjct: 79 ARGNVAG 85


>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
          Length = 677

 Score = 25.6 bits (56), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 33  GLRKWQFDVWSNDVTFANHMESGG 56
           GLRK  +D + N+  +  HM S  
Sbjct: 384 GLRKDAYDRFHNEEVYLEHMNSSA 407


>gnl|CDD|217193 pfam02705, K_trans, K+ potassium transporter.  This is a family of
           K+ potassium transporters that are conserved across
           phyla, having both bacterial (KUP), yeast (HAK), and
           plant (AtKT) sequences as members.
          Length = 534

 Score = 24.7 bits (55), Expect = 7.5
 Identities = 6/30 (20%), Positives = 15/30 (50%)

Query: 5   MTSLLLTIWNLAVFRVNRVLSNVLCGVLGL 34
           +T++LL +    V+R   +L+ +      +
Sbjct: 367 ITTILLFLVARRVWRWPLILALLFLLFFLV 396


>gnl|CDD|199876 cd06909, M14_ASPA, Peptidase M14 Aspartoacylase (ASPA) subfamily.
           Aspartoacylase (ASPA) belongs to the Succinylglutamate
          desuccinylase/aspartoacylase subfamily of the M14
          family of metallocarboxypeptidases. ASPA (also known as
          aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl
          L-aspartic acid (NAA) into aspartate and acetate. NAA
          is abundant in the brain, and hydrolysis of NAA by ASPA
          may help maintain white matter. ASPA is an NAA
          scavenger in other tissues. Mutations in the gene
          encoding ASPA cause Canavan disease (CD), a fatal
          progressive neurodegenerative disorder involving
          dysmyelination and spongiform degeneration of white
          matter in children. This enzyme binds zinc which is
          necessary for activity. Measurement of elevated NAA
          levels in urine is used in the diagnosis of CD.
          Length = 282

 Score = 24.8 bits (55), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 55 GGVPGNVLCGVLGLRKWQ 72
          GG  GN L GV  ++KW 
Sbjct: 7  GGTHGNELTGVYLVKKWL 24


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.139    0.467 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,729,175
Number of extensions: 374609
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 15
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)