RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10910
(93 letters)
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 81.9 bits (203), Expect = 5e-21
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G V CGVLGLRKWQFDVWS+DVTLANHME+GG G
Sbjct: 135 GRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAG 169
Score = 76.5 bits (189), Expect = 5e-19
Identities = 28/36 (77%), Positives = 30/36 (83%)
Query: 26 NVLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V CGVLGLRKWQFDVWSNDVT ANHME+GG G +
Sbjct: 136 RVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 171
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 57.2 bits (139), Expect = 8e-12
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G V+ GV+G R++++ VW D V +A+ MES G
Sbjct: 111 GPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVG 145
Score = 52.2 bits (126), Expect = 7e-10
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V+ GV+G R++++ VW + V A+ MES G +
Sbjct: 113 VVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQI 147
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 55.0 bits (133), Expect = 7e-11
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G+V GV+G++ ++ ++ ++VTLAN ES VP
Sbjct: 115 GSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPR 149
Score = 50.0 bits (120), Expect = 6e-09
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V GV+G++ ++ ++ N+VT AN ES VP +
Sbjct: 117 VFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKI 151
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 49.3 bits (118), Expect = 8e-09
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G V+ GV+G R ++ ++ + V L + E+ G G
Sbjct: 119 GEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKG 153
Score = 45.0 bits (107), Expect = 3e-07
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNV 61
V+ GV+G R ++ ++ N V + E+ G G +
Sbjct: 121 VVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKI 155
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 41.5 bits (98), Expect = 6e-06
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G V+ GV+G +K Q+D+W + V +A+ M+S GV
Sbjct: 133 GPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLD 167
Score = 38.0 bits (89), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPG 59
V+ GV+G +K Q+D+W N V A+ M+S GV
Sbjct: 135 VIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLD 167
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 39.6 bits (93), Expect = 3e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G V+ GV+G + +F ++ D V A+ MES G G
Sbjct: 111 GPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAG 145
Score = 35.7 bits (83), Expect = 5e-04
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPG 59
V+ GV+G + +F ++ + V A+ MES G G
Sbjct: 113 VVAGVVGRKMPRFXLFGDTVNTASRMESHGEAG 145
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 28.7 bits (64), Expect = 0.23
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G + K +D + +A ES G
Sbjct: 141 GLCDIRHDEVTK-GYDYYGRTPNMAARTESVANGG 174
Score = 26.3 bits (58), Expect = 1.3
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 27 VLCGVLGLRKWQFDVWSNDVTFANHMESGGVPGNVLC 63
+ K +D + A ES G VL
Sbjct: 143 CDIRHDEVTK-GYDYYGRTPNMAARTESVANGGQVLM 178
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 27.6 bits (61), Expect = 0.57
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 59 GNVLCGVLGLRKWQFDVWSDDVTLANHMESGGVPG 93
G + D + V +A+ + PG
Sbjct: 304 GMAVSRA-------GDWFGSPVNVASRVTGVARPG 331
Score = 24.6 bits (53), Expect = 6.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 39 FDVWSNDVTFANHMESGGVPGNVL 62
D + + V A+ + PG VL
Sbjct: 311 GDWFGSPVNVASRVTGVARPGAVL 334
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot
phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A
{Homo sapiens} SCOP: a.211.1.2
Length = 365
Score = 24.4 bits (53), Expect = 8.1
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 51 HMESGGVPGNVLCGVLGLRKWQFDVWS-DDVTLANHM 86
HM VL + L W FDV+S + + +
Sbjct: 3 HMVGPTYSTAVLNCLKNLDLWCFDVFSLNQAADDHAL 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.467
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,503,670
Number of extensions: 75219
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 26
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.2 bits)