Query psy10916
Match_columns 137
No_of_seqs 8 out of 10
Neff 1.5
Searched_HMMs 46136
Date Fri Aug 16 21:49:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03257 Capsid triplex subuni 36.9 14 0.00031 32.0 0.6 8 127-134 265-272 (316)
2 PF12540 DUF3736: Protein of u 36.9 33 0.00071 26.5 2.5 63 58-125 44-112 (147)
3 KOG4163|consensus 34.4 16 0.00034 34.1 0.5 20 77-97 202-221 (551)
4 smart00838 EFG_C Elongation fa 33.4 10 0.00022 24.7 -0.7 27 16-43 41-67 (85)
5 cd03710 BipA_TypA_C BipA_TypA_ 31.8 9 0.00019 24.9 -1.1 25 16-41 40-64 (79)
6 cd03711 Tet_C Tet_C: C-terminu 29.3 11 0.00023 24.3 -1.1 28 15-43 38-65 (78)
7 COG4535 CorC Putative Mg2+ and 27.5 26 0.00057 30.5 0.7 43 82-136 68-110 (293)
8 cd04096 eEF2_snRNP_like_C eEF2 25.1 15 0.00033 23.5 -0.9 25 16-41 41-65 (80)
9 cd03713 EFG_mtEFG_C EFG_mtEFG_ 25.0 17 0.00036 23.1 -0.7 26 16-42 39-64 (78)
10 PF00679 EFG_C: Elongation fac 24.3 19 0.00042 23.8 -0.6 30 15-45 42-71 (89)
11 cd04097 mtEFG1_C mtEFG1_C: C-t 23.3 18 0.00038 23.3 -0.9 26 16-42 39-64 (78)
12 PF00394 Cu-oxidase: Multicopp 23.1 84 0.0018 22.5 2.5 31 47-78 68-98 (159)
13 PF04831 Popeye: Popeye protei 22.8 86 0.0019 24.8 2.7 59 51-114 58-150 (153)
14 COG0512 PabA Anthranilate/para 22.2 94 0.002 25.2 2.9 34 43-77 100-148 (191)
15 KOG2345|consensus 21.0 52 0.0011 28.8 1.2 24 98-121 268-291 (302)
16 PF09421 FRQ: Frequency clock 20.0 2E+02 0.0043 28.8 5.0 65 67-136 781-864 (989)
No 1
>PHA03257 Capsid triplex subunit 2; Provisional
Probab=36.90 E-value=14 Score=32.04 Aligned_cols=8 Identities=63% Similarity=1.331 Sum_probs=6.1
Q ss_pred CCCCcccc
Q psy10916 127 SRYPVYEE 134 (137)
Q Consensus 127 ~~~~~~~~ 134 (137)
-||||||-
T Consensus 265 rr~~~yea 272 (316)
T PHA03257 265 RRFPVYEA 272 (316)
T ss_pred ccccHHHH
Confidence 48999973
No 2
>PF12540 DUF3736: Protein of unknown function (DUF3736); InterPro: IPR022207 This domain family is found in eukaryotes, and is typically between 135 and 160 amino acids in length.
Probab=36.86 E-value=33 Score=26.54 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=35.7
Q ss_pred eeeeEEeeeecCceeeecCCCCcchhhhhhhh---cchhhHHHHHHHHHHHhhhhc---CCCCCCCCCCCCCCC
Q psy10916 58 QATLHSIRVLQPKQVRVDSQDDHDSTREFLWK---RSSHIAHLVTEKLTSAARSLL---QPIPSNTPHIPLPPP 125 (137)
Q Consensus 58 ~ATLhSIrVlQPKQvrVdS~DnHdrTREfvW~---RS~~IAhlVsqKL~sAarsml---~p~p~~t~~~~~~~~ 125 (137)
.|++|+|= -||--++ |+.-+|.+|+|+ ++...|.-..+-...--+-+| .|.+-+-++-|-.|+
T Consensus 44 ~a~~~~V~-~~pPl~~----~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~r~r~l~~~~p~~q~~~~~p~~Ps 112 (147)
T PF12540_consen 44 PATLRRVP-EQPPLVL----DASTMKVEFLWRVGQTTPQQACRYYQGQRRKRRRMLREEPPSPQEKQGKPPVPS 112 (147)
T ss_pred cCCCCccC-CCCCeee----cccccchhHHHHhhccccchhhHhhhccccccccccccCCCCccccccCCCCCC
Confidence 67777763 3555553 566799999998 344555444443333344455 344444445444444
No 3
>KOG4163|consensus
Probab=34.41 E-value=16 Score=34.11 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=14.6
Q ss_pred CCCcchhhhhhhhcchhhHHH
Q psy10916 77 QDDHDSTREFLWKRSSHIAHL 97 (137)
Q Consensus 77 ~DnHdrTREfvW~RS~~IAhl 97 (137)
+--.-|||||+||- -|-||+
T Consensus 202 p~PFlRtrEFLWQE-GHTAfa 221 (551)
T KOG4163|consen 202 PQPFLRTREFLWQE-GHTAFA 221 (551)
T ss_pred CCcchhhhHHHHhc-CcchhC
Confidence 34567999999996 466664
No 4
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=33.39 E-value=10 Score=24.73 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=20.6
Q ss_pred hhhhcCCCcccccchhhhhhhhhhchhh
Q psy10916 16 VYLKASIPTFQFGRGVKKELRSATATTA 43 (137)
Q Consensus 16 ~~~~~~~~ekefgrGakkelkSATAtT~ 43 (137)
+.+++.+|-.++ -|-..+|||+|.-.+
T Consensus 41 ~~i~~~iP~~~~-~~~~~~Lrs~T~G~~ 67 (85)
T smart00838 41 QVIKAKVPLSEM-FGYATDLRSATQGRA 67 (85)
T ss_pred EEEEEECCHHHH-hchHHHHHHhcCCeE
Confidence 557788888888 788888888886543
No 5
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=31.77 E-value=9 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=13.9
Q ss_pred hhhhcCCCcccccchhhhhhhhhhch
Q psy10916 16 VYLKASIPTFQFGRGVKKELRSATAT 41 (137)
Q Consensus 16 ~~~~~~~~ekefgrGakkelkSATAt 41 (137)
+.+++.+|-.++ -|-..+|||+|.-
T Consensus 40 ~~i~~~~P~~~~-~~~~~~Lrs~T~G 64 (79)
T cd03710 40 TRLEFKIPSRGL-IGFRSEFLTDTRG 64 (79)
T ss_pred EEEEEEECHHHH-cCcHHHHHhhCCC
Confidence 335555555555 5666666666543
No 6
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=29.25 E-value=11 Score=24.34 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=18.6
Q ss_pred hhhhhcCCCcccccchhhhhhhhhhchhh
Q psy10916 15 RVYLKASIPTFQFGRGVKKELRSATATTA 43 (137)
Q Consensus 15 ~~~~~~~~~ekefgrGakkelkSATAtT~ 43 (137)
++.+++.+|-.+. -|-..+|||+|.-.+
T Consensus 38 ~~~i~~~~P~~~~-~g~~~~Lr~~T~G~~ 65 (78)
T cd03711 38 EVTLEGTIPVATS-QDYQSELPSYTHGEG 65 (78)
T ss_pred EEEEEEEECHHHH-hhHHHHhHhhcCCeE
Confidence 3456777777776 677777777776543
No 7
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=27.52 E-value=26 Score=30.49 Aligned_cols=43 Identities=28% Similarity=0.457 Sum_probs=28.4
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCcccccC
Q psy10916 82 STREFLWKRSSHIAHLVTEKLTSAARSLLQPIPSNTPHIPLPPPPSRYPVYEEDN 136 (137)
Q Consensus 82 rTREfvW~RS~~IAhlVsqKL~sAarsml~p~p~~t~~~~~~~~~~~~~~~~~~~ 136 (137)
+-|+.|--||.++.--..|-|..-..-+ .+++| |||||+.||+
T Consensus 68 ~vrDiMIPRSQM~~l~~~~~l~~~l~~i-----iesaH-------SRfPVi~edk 110 (293)
T COG4535 68 RVRDIMIPRSQMITLKRNQTLDECLDVI-----IESAH-------SRFPVISEDK 110 (293)
T ss_pred hHhhhcccHHHheeccccCCHHHHHHHH-----HHhcc-------ccCCcccCCc
Confidence 4567777787777655555555443333 34555 8999999985
No 8
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=25.08 E-value=15 Score=23.52 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=14.6
Q ss_pred hhhhcCCCcccccchhhhhhhhhhch
Q psy10916 16 VYLKASIPTFQFGRGVKKELRSATAT 41 (137)
Q Consensus 16 ~~~~~~~~ekefgrGakkelkSATAt 41 (137)
+.+++.+|-.|+ -|-..+|||.|.-
T Consensus 41 ~~i~~~iP~~e~-~~~~~~Lrs~T~G 65 (80)
T cd04096 41 FEIKAYLPVIES-FGFETDLRSATSG 65 (80)
T ss_pred EEEEEEEeHHHH-hCcHHHHHhhCCC
Confidence 445556666665 5666666666643
No 9
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=25.02 E-value=17 Score=23.15 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=18.3
Q ss_pred hhhhcCCCcccccchhhhhhhhhhchh
Q psy10916 16 VYLKASIPTFQFGRGVKKELRSATATT 42 (137)
Q Consensus 16 ~~~~~~~~ekefgrGakkelkSATAtT 42 (137)
+.+++.+|-.|+ -|-..+|||+|.-.
T Consensus 39 ~~i~~~iP~~e~-~~~~~~Lr~~T~G~ 64 (78)
T cd03713 39 KVIKAEVPLAEM-FGYSTDLRSLTQGR 64 (78)
T ss_pred EEEEEEcCHHHH-hChHHHHHhhcCCe
Confidence 456777777777 67777777777643
No 10
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=24.27 E-value=19 Score=23.76 Aligned_cols=30 Identities=40% Similarity=0.554 Sum_probs=23.0
Q ss_pred hhhhhcCCCcccccchhhhhhhhhhchhhhh
Q psy10916 15 RVYLKASIPTFQFGRGVKKELRSATATTAEM 45 (137)
Q Consensus 15 ~~~~~~~~~ekefgrGakkelkSATAtT~EM 45 (137)
++.+++.+|-.+.- |-..+||++|.-.+.+
T Consensus 42 ~~~i~~~iP~~~~~-gf~~~Lr~~T~G~a~~ 71 (89)
T PF00679_consen 42 RVVIEAEIPVRELF-GFRSELRSLTSGRASF 71 (89)
T ss_dssp EEEEEEEEEGGGHT-THHHHHHHHTTTS-EE
T ss_pred heeEEEEEChhhhh-hHHHHhhccCCCEEEE
Confidence 45677888988887 9999999998766543
No 11
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=23.33 E-value=18 Score=23.30 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=17.7
Q ss_pred hhhhcCCCcccccchhhhhhhhhhchh
Q psy10916 16 VYLKASIPTFQFGRGVKKELRSATATT 42 (137)
Q Consensus 16 ~~~~~~~~ekefgrGakkelkSATAtT 42 (137)
+.+++.+|-.++ -|-..+|||+|.-.
T Consensus 39 ~~i~~~~P~~e~-~g~~~~Lr~~T~G~ 64 (78)
T cd04097 39 FTLEAEVPLNDM-FGYSTELRSMTQGK 64 (78)
T ss_pred EEEEEEECHHHh-hChHHHHHhhCCCc
Confidence 456677777776 67777777777643
No 12
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=23.12 E-value=84 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=21.1
Q ss_pred eeeEEEEeeCceeeeEEeeeecCceeeecCCC
Q psy10916 47 GKINLRVMHGGQATLHSIRVLQPKQVRVDSQD 78 (137)
Q Consensus 47 Gkl~lrV~~gG~ATLhSIrVlQPKQvrVdS~D 78 (137)
-+..||+.++|..+.+.+.+-.- .+.|-..|
T Consensus 68 ~~~rlRliNa~~~~~~~~~i~gh-~~~Via~D 98 (159)
T PF00394_consen 68 ERYRLRLINAGASTSFNFSIDGH-PMTVIAAD 98 (159)
T ss_dssp TEEEEEEEEESSS-BEEEEETTB-CEEEEEET
T ss_pred cEEEEEEEeccCCeeEEEEeecc-ceeEeeec
Confidence 35899999999999998887543 34444444
No 13
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=22.78 E-value=86 Score=24.83 Aligned_cols=59 Identities=32% Similarity=0.427 Sum_probs=38.4
Q ss_pred EEEeeCceeeeEEeeeecCceeeecCCCC-----------------cchhhhhhhhcch-----------------hhHH
Q psy10916 51 LRVMHGGQATLHSIRVLQPKQVRVDSQDD-----------------HDSTREFLWKRSS-----------------HIAH 96 (137)
Q Consensus 51 lrV~~gG~ATLhSIrVlQPKQvrVdS~Dn-----------------HdrTREfvW~RS~-----------------~IAh 96 (137)
+||..+| -.||-| .|.|. +|||+= -+.-|=+.|+|.. -|++
T Consensus 58 ~~Vs~~g-~fLH~I---~p~qF-lDSPEW~s~~~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGk 132 (153)
T PF04831_consen 58 MRVSCDG-RFLHYI---YPYQF-LDSPEWESLRPSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGK 132 (153)
T ss_pred EEEEECC-EeeEee---ccccc-ccChhhhccccCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 4667775 479988 46554 455431 1234668899864 4666
Q ss_pred HHHHHHHHHhhhhcCCCC
Q psy10916 97 LVTEKLTSAARSLLQPIP 114 (137)
Q Consensus 97 lVsqKL~sAarsml~p~p 114 (137)
=|++||-+....+++.-+
T Consensus 133 DI~~KLy~ln~~~~~~~g 150 (153)
T PF04831_consen 133 DIAEKLYSLNEKLFTKRG 150 (153)
T ss_pred HHHHHHHHhhhHhHhhcc
Confidence 678899888877776544
No 14
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.22 E-value=94 Score=25.18 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=26.7
Q ss_pred hhheeeeEEEEeeCc------------eeeeEEeeeec---CceeeecCC
Q psy10916 43 AEMMGKINLRVMHGG------------QATLHSIRVLQ---PKQVRVDSQ 77 (137)
Q Consensus 43 ~EM~Gkl~lrV~~gG------------~ATLhSIrVlQ---PKQvrVdS~ 77 (137)
.=|+||.+ .|.|+| ++-+||+-|-. |+-+.|++.
T Consensus 100 ~~~HGK~s-~i~h~g~~iF~glp~~f~v~RYHSLvv~~~~lP~~l~vtA~ 148 (191)
T COG0512 100 EPMHGKTS-IITHDGSGLFAGLPNPFTVTRYHSLVVDPETLPEELEVTAE 148 (191)
T ss_pred CCcCCeee-eeecCCcccccCCCCCCEEEeeEEEEecCCCCCCceEEEEE
Confidence 35999999 888887 45789998874 677777765
No 15
>KOG2345|consensus
Probab=21.01 E-value=52 Score=28.84 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCC
Q psy10916 98 VTEKLTSAARSLLQPIPSNTPHIP 121 (137)
Q Consensus 98 VsqKL~sAarsml~p~p~~t~~~~ 121 (137)
.||+|-+--++|++++|..-|+|+
T Consensus 268 yse~l~~lik~mlqvdP~qRP~i~ 291 (302)
T KOG2345|consen 268 YSEALHQLIKSMLQVDPNQRPTIP 291 (302)
T ss_pred ccHHHHHHHHHHhcCCcccCCCHH
Confidence 689999999999999999999986
No 16
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=20.02 E-value=2e+02 Score=28.78 Aligned_cols=65 Identities=29% Similarity=0.528 Sum_probs=36.8
Q ss_pred ecCceeeecCCCCcchhhhhhhhcchhhHHHHHHHHHHHhhhhcCC--CCCCC-----------------CCCCCCCCCC
Q psy10916 67 LQPKQVRVDSQDDHDSTREFLWKRSSHIAHLVTEKLTSAARSLLQP--IPSNT-----------------PHIPLPPPPS 127 (137)
Q Consensus 67 lQPKQvrVdS~DnHdrTREfvW~RS~~IAhlVsqKL~sAarsml~p--~p~~t-----------------~~~~~~~~~~ 127 (137)
-+||+++..+.-...++| ++..++..+.++|.....|.=-| ...++ +-.|||||-+
T Consensus 781 KRpk~~~p~~~~~~~r~~-----~se~~~~~I~~rLAs~~TSsp~p~~s~~k~~~~~IeiEYlS~rikrL~PvpLPpPa~ 855 (989)
T PF09421_consen 781 KRPKDIRPSASRPIGRRR-----RSEESTERIIQRLASMSTSSPSPGPSERKTSEPPIEIEYLSGRIKRLAPVPLPPPAS 855 (989)
T ss_pred cccccccccccccccccc-----ccchhHHHHHHHHhhccccCCCCCCCccccccCceeEEEeeccceecCCCCCCCccc
Confidence 466666543322223322 23367778888887766653122 22222 2248999999
Q ss_pred CCCcccccC
Q psy10916 128 RYPVYEEDN 136 (137)
Q Consensus 128 ~~~~~~~~~ 136 (137)
-||-|.-|+
T Consensus 856 FFpPFSsds 864 (989)
T PF09421_consen 856 FFPPFSSDS 864 (989)
T ss_pred ccCCcccCC
Confidence 998776554
Done!