Query psy10916
Match_columns 137
No_of_seqs 8 out of 10
Neff 1.5
Searched_HMMs 29240
Date Fri Aug 16 21:50:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gb3_1 Coat protein 1; capsid 45.9 16 0.00055 29.8 3.4 35 40-74 207-244 (281)
2 1e5p_A Aphrodisin; lipocalin, 37.8 23 0.00077 23.2 2.6 29 81-109 103-133 (151)
3 2g3b_A Putative TETR-family tr 36.1 20 0.00068 23.9 2.1 30 100-129 178-207 (208)
4 1dzk_A PIG OBP, odorant-bindin 30.1 40 0.0014 22.0 2.8 29 81-109 109-139 (157)
5 2hlv_A Odorant-binding protein 27.6 42 0.0014 22.2 2.6 29 81-109 110-140 (160)
6 3aw5_A Multicopper oxidase; be 26.7 60 0.0021 26.0 3.8 21 46-66 186-206 (448)
7 1bj7_A D 2; allergen, lipocali 22.8 53 0.0018 21.6 2.4 28 82-109 109-138 (156)
8 2uxt_A Protein SUFI, SUFI; oxi 21.6 77 0.0026 25.4 3.5 20 47-66 200-219 (451)
9 3nrt_A Putative ryanodine rece 21.5 35 0.0012 23.6 1.3 16 109-124 10-25 (103)
10 1kmt_A RHO GDP-dissociation in 18.9 93 0.0032 22.7 3.2 31 46-76 48-78 (141)
No 1
>4gb3_1 Coat protein 1; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_1* 1jew_1 1oop_A* 1mqt_A*
Probab=45.90 E-value=16 Score=29.84 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=26.5
Q ss_pred chhhhheeeeEEEEeeCceeee--EEeee-ecCceeee
Q psy10916 40 ATTAEMMGKINLRVMHGGQATL--HSIRV-LQPKQVRV 74 (137)
Q Consensus 40 AtT~EM~Gkl~lrV~~gG~ATL--hSIrV-lQPKQvrV 74 (137)
..+.-.||.|-+|+++++...- -.||| ++||.||.
T Consensus 207 ~~~~N~mGtl~~R~vn~~~~~~~~~~vRvY~kpkhv~a 244 (281)
T 4gb3_1 207 INTLNNMGTLYARHVNAGSTGPIKSTIRIYFKPKHVKA 244 (281)
T ss_dssp GGGTCCCCEEEEEESSCCSSSCEEEEEEEEECEEEEEE
T ss_pred ccccCCCceEEEEeccCCCCCceEEEEEEEEeeeeeEE
Confidence 3566789999999999876543 34666 58999976
No 2
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=37.85 E-value=23 Score=23.18 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=25.3
Q ss_pred chhhhhhh--hcchhhHHHHHHHHHHHhhhh
Q psy10916 81 DSTREFLW--KRSSHIAHLVTEKLTSAARSL 109 (137)
Q Consensus 81 drTREfvW--~RS~~IAhlVsqKL~sAarsm 109 (137)
...+.++| -|++.+..-+-+++...|+++
T Consensus 103 ~~~~~~~~llsR~~~l~~e~~~~f~~~~~~~ 133 (151)
T 1e5p_A 103 GQETNMIVVAGKGNALTPEENEILVQFAHEK 133 (151)
T ss_dssp SCEEEEEEEEESSSCCCHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 66778888 899999999999999999876
No 3
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.12 E-value=20 Score=23.87 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=7.6
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCCCCCCCCC
Q psy10916 100 EKLTSAARSLLQPIPSNTPHIPLPPPPSRY 129 (137)
Q Consensus 100 qKL~sAarsml~p~p~~t~~~~~~~~~~~~ 129 (137)
+-+......++.|....++-.|+||+|-.|
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 207 (208)
T 2g3b_A 178 SHLLGAIDVVMSEPTHHTADTPVTPTPKEY 207 (208)
T ss_dssp HHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCcccc
Confidence 344555677888988888888888888766
No 4
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=30.15 E-value=40 Score=22.03 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=24.1
Q ss_pred chhhhhhh--hcchhhHHHHHHHHHHHhhhh
Q psy10916 81 DSTREFLW--KRSSHIAHLVTEKLTSAARSL 109 (137)
Q Consensus 81 drTREfvW--~RS~~IAhlVsqKL~sAarsm 109 (137)
...+.++| -|++.+-.-+-+++...|+++
T Consensus 109 g~~~~~~~llsR~~~~~~e~~~~f~~~~~~~ 139 (157)
T 1dzk_A 109 GDKTIMTGLLGKGTDIEDQDLEKFKEVTREN 139 (157)
T ss_dssp CCEEEEEEEEESSSCCCHHHHHHHHHHHHHT
T ss_pred CceEEEEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 45577888 899999888999999988876
No 5
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=27.61 E-value=42 Score=22.15 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=24.3
Q ss_pred chhhhhhh--hcchhhHHHHHHHHHHHhhhh
Q psy10916 81 DSTREFLW--KRSSHIAHLVTEKLTSAARSL 109 (137)
Q Consensus 81 drTREfvW--~RS~~IAhlVsqKL~sAarsm 109 (137)
...+.++| -|++.+-.-+-+++...++++
T Consensus 110 g~~~~~~~llsR~~~~~~e~~~~f~~~~~~~ 140 (160)
T 2hlv_A 110 GQTTELTELFVKGLNVEDEDLEKFWKLTEDK 140 (160)
T ss_dssp SCEEEEEEEEECSSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 55567888 899999999999999998876
No 6
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=26.72 E-value=60 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.5
Q ss_pred eeeeEEEEeeCceeeeEEeee
Q psy10916 46 MGKINLRVMHGGQATLHSIRV 66 (137)
Q Consensus 46 ~Gkl~lrV~~gG~ATLhSIrV 66 (137)
-|+..||++|.|.++.+.+.+
T Consensus 186 ~g~~RlRliNa~~~~~~~~~i 206 (448)
T 3aw5_A 186 GGSYRLRLVNGSNARLYMLSI 206 (448)
T ss_dssp EEEEEEEEEECSSSCCEEEEE
T ss_pred CCeEEEEEEcCCCcceEEEEE
Confidence 468999999999998888888
No 7
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=22.84 E-value=53 Score=21.56 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=23.8
Q ss_pred hhhhhhh--hcchhhHHHHHHHHHHHhhhh
Q psy10916 82 STREFLW--KRSSHIAHLVTEKLTSAARSL 109 (137)
Q Consensus 82 rTREfvW--~RS~~IAhlVsqKL~sAarsm 109 (137)
..+.++| -|++.+-.-+-+++...|+++
T Consensus 109 ~~~~~~~llsR~~~l~~e~~~~f~~~~~~~ 138 (156)
T 1bj7_A 109 RITKMTEGLAKGTSFTPEELEKYQQLNSER 138 (156)
T ss_dssp CEEEEEEEEESSSCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 4567888 899999999999999999876
No 8
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=21.59 E-value=77 Score=25.37 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.8
Q ss_pred eeeEEEEeeCceeeeEEeee
Q psy10916 47 GKINLRVMHGGQATLHSIRV 66 (137)
Q Consensus 47 Gkl~lrV~~gG~ATLhSIrV 66 (137)
|+..||+++.|.++.+++.+
T Consensus 200 g~~RlRliNa~~~~~~~~~i 219 (451)
T 2uxt_A 200 GWVRLRLLNASNSRRYQLQM 219 (451)
T ss_dssp SEEEEEEEECCSSCCEEEEE
T ss_pred CEEEEEEEccCCceeEEEEE
Confidence 58999999999998888877
No 9
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron}
Probab=21.51 E-value=35 Score=23.56 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=14.5
Q ss_pred hcCCCCCCCCCCCCCC
Q psy10916 109 LLQPIPSNTPHIPLPP 124 (137)
Q Consensus 109 ml~p~p~~t~~~~~~~ 124 (137)
-|.|.|+.|.+|-||+
T Consensus 10 ~y~P~Pvd~s~v~L~~ 25 (103)
T 3nrt_A 10 DYIPEPMDLSLVDLPE 25 (103)
T ss_dssp CCCCCCCCCTTCCCCH
T ss_pred CCCCCCccccceeCCH
Confidence 3899999999999986
No 10
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=18.94 E-value=93 Score=22.69 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=27.8
Q ss_pred eeeeEEEEeeCceeeeEEeeeecCceeeecC
Q psy10916 46 MGKINLRVMHGGQATLHSIRVLQPKQVRVDS 76 (137)
Q Consensus 46 ~Gkl~lrV~~gG~ATLhSIrVlQPKQvrVdS 76 (137)
.=+|+|+|+|.=..-|+-+.+..=+-|+||+
T Consensus 48 ~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk 78 (141)
T 1kmt_A 48 RIKISFRVNREIVSGMKYIQHTYRKGVKIDK 78 (141)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEccccccCcEEEEEEEECCEEECc
Confidence 4479999999999999999999999999986
Done!