Query psy10916
Match_columns 137
No_of_seqs 8 out of 10
Neff 1.5
Searched_HMMs 13730
Date Fri Aug 16 21:50:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10916.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10916hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1aym1_ b.121.4.1 (1:) Rhinovi 48.0 5.9 0.00043 30.5 3.0 35 41-75 209-246 (285)
2 d1r1a1_ b.121.4.1 (1:) Rhinovi 47.1 4.5 0.00033 31.1 2.2 35 41-75 208-245 (283)
3 d1ev11_ b.121.4.1 (1:) Human e 46.2 6.8 0.0005 30.1 3.2 35 41-75 211-248 (281)
4 d1oopa_ b.121.4.1 (A:) Swine v 45.4 7 0.00051 30.0 3.1 35 41-75 198-235 (271)
5 d1ncqa_ b.121.4.1 (A:) Rhinovi 45.0 7.3 0.00053 29.8 3.2 35 41-75 200-237 (273)
6 d1pvc1_ b.121.4.1 (1:) Poliovi 44.2 6.5 0.00048 30.4 2.8 34 41-74 210-246 (279)
7 d1gska2 b.6.1.3 (A:183-356) Sp 37.2 12 0.00086 25.3 2.9 34 46-79 65-98 (174)
8 d1bev1_ b.121.4.1 (1:) Bovine 37.1 12 0.00086 28.6 3.2 35 40-75 198-233 (268)
9 d1fpn1_ b.121.4.1 (1:) Rhinovi 36.6 14 0.001 28.3 3.6 34 41-74 194-230 (269)
10 d1d4m1_ b.121.4.1 (1:) Human e 35.2 13 0.00093 28.8 3.2 35 41-75 211-248 (284)
11 d2bv3a5 d.58.11.1 (A:600-688) 27.8 8.9 0.00065 23.2 0.8 28 17-45 43-70 (89)
12 d2v4ja2 d.58.36.2 (A:2-167) Di 25.3 10 0.00074 27.5 0.9 16 57-72 92-107 (166)
13 d1aoza2 b.6.1.3 (A:130-338) As 24.9 31 0.0023 22.6 3.4 22 47-68 83-104 (209)
14 d3c7ba2 d.58.36.2 (A:1-166) Di 24.0 13 0.00093 27.0 1.2 16 57-72 90-105 (166)
15 d1beba_ b.60.1.1 (A:) beta-Lac 22.2 16 0.0011 21.9 1.2 30 80-109 108-139 (156)
16 d1kv7a2 b.6.1.3 (A:171-335) mu 21.4 36 0.0026 22.6 3.1 35 46-80 58-92 (165)
No 1
>d1aym1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}
Probab=48.01 E-value=5.9 Score=30.54 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.3
Q ss_pred hhhhheeeeEEEEeeCceeeeEEe--ee-ecCceeeec
Q psy10916 41 TTAEMMGKINLRVMHGGQATLHSI--RV-LQPKQVRVD 75 (137)
Q Consensus 41 tT~EM~Gkl~lrV~~gG~ATLhSI--rV-lQPKQvrVd 75 (137)
..+-++|.|.+|++++...+...+ || ++||.||+=
T Consensus 209 ~p~n~mGtl~~R~vn~~~~~~~~~~~rVY~k~Khvraw 246 (285)
T d1aym1_ 209 VVTNDMGTLCSRIVTSEQLHKVKVVTRIYHKAKHTKAW 246 (285)
T ss_dssp TTTCCCCEEEEEECSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred cccccceeeEEEeecCCCCCcceEEEEEEEEecceEEE
Confidence 467789999999999877765544 54 689999864
No 2
>d1r1a1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]}
Probab=47.13 E-value=4.5 Score=31.15 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.3
Q ss_pred hhhhheeeeEEEEeeCceeeeE--Eeee-ecCceeeec
Q psy10916 41 TTAEMMGKINLRVMHGGQATLH--SIRV-LQPKQVRVD 75 (137)
Q Consensus 41 tT~EM~Gkl~lrV~~gG~ATLh--SIrV-lQPKQvrVd 75 (137)
..+-++|.|.+|++++...+-. .||| ++||.||+=
T Consensus 208 ~p~n~mGtl~vR~vn~~~~~~~~~~vrVY~k~Khvraw 245 (283)
T d1r1a1_ 208 VVTNDMGTICSRIVTEKQKLSVVITTHIYHKAKHTKAW 245 (283)
T ss_dssp TTSCCCCEEEEECTTCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred ccccCceeEEEEEecCCCCCceeEEEEEEEEecceEEE
Confidence 4567899999999987665433 3577 499999864
No 3
>d1ev11_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human echovirus 1 [TaxId: 46633]}
Probab=46.15 E-value=6.8 Score=30.10 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=25.8
Q ss_pred hhhhheeeeEEEEeeCceeeeEE--eee-ecCceeeec
Q psy10916 41 TTAEMMGKINLRVMHGGQATLHS--IRV-LQPKQVRVD 75 (137)
Q Consensus 41 tT~EM~Gkl~lrV~~gG~ATLhS--IrV-lQPKQvrVd 75 (137)
..+-+||.|.+|++++.....+. +|| ++||.||+=
T Consensus 211 ~p~N~mGtl~~R~vn~~~~~~~~~~~RVy~kpKhvraw 248 (281)
T d1ev11_ 211 TTLNNMGQLFFRHVNKPNPAAITSVARIYFKPKHVRAW 248 (281)
T ss_dssp GGTCCCCEEEEEECSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred cCcccCeEEEEEEecCCCCcceeEEEEEEEEecceEEE
Confidence 46678999999999876554442 455 689988763
No 4
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}
Probab=45.38 E-value=7 Score=29.97 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=26.3
Q ss_pred hhhhheeeeEEEEeeCceeee-E-Eeee-ecCceeeec
Q psy10916 41 TTAEMMGKINLRVMHGGQATL-H-SIRV-LQPKQVRVD 75 (137)
Q Consensus 41 tT~EM~Gkl~lrV~~gG~ATL-h-SIrV-lQPKQvrVd 75 (137)
..+-+||.|.+|+++++.... . .||| ++||.||+=
T Consensus 198 ~p~N~mGtl~vR~vn~~~~~~~~~~~RvY~kpKhvraw 235 (271)
T d1oopa_ 198 STLNNMGTLYMRHVNDGGPGPIVSTVRIYFKPKHVKTW 235 (271)
T ss_dssp GGTCCCCEEEEEESSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred ccccCCeeEEEEEecCCCCCceEEEEEEEEeecceEEE
Confidence 567789999999998766532 2 3666 689999863
No 5
>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Probab=45.04 E-value=7.3 Score=29.82 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=25.9
Q ss_pred hhhhheeeeEEEEeeCceeee--EEeee-ecCceeeec
Q psy10916 41 TTAEMMGKINLRVMHGGQATL--HSIRV-LQPKQVRVD 75 (137)
Q Consensus 41 tT~EM~Gkl~lrV~~gG~ATL--hSIrV-lQPKQvrVd 75 (137)
..+-+||.|.+|++++..... -.||| ++||.||.=
T Consensus 200 ~p~n~mGtl~iR~vn~~~~~~~~~~~riY~k~Khvraw 237 (273)
T d1ncqa_ 200 TVLNHMGSMAFRIVNEHDEHKTLVKIRVYHRAKHVEAW 237 (273)
T ss_dssp GGTCCCCEEEEEECSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred cccCcceeEEEEEecCCCCccceEEEEEEEeecceEEE
Confidence 467789999999999765433 24666 689988763
No 6
>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3, strain Sabin [TaxId: 12086]}
Probab=44.15 E-value=6.5 Score=30.38 Aligned_cols=34 Identities=32% Similarity=0.608 Sum_probs=26.4
Q ss_pred hhhhheeeeEEEEeeCceeee-E-Eeee-ecCceeee
Q psy10916 41 TTAEMMGKINLRVMHGGQATL-H-SIRV-LQPKQVRV 74 (137)
Q Consensus 41 tT~EM~Gkl~lrV~~gG~ATL-h-SIrV-lQPKQvrV 74 (137)
.+.-+||.|-+|++++...+- . .||| ++||.||+
T Consensus 210 ~~~N~mGtl~~R~vn~~~~~~~~~~vRiY~kpKHvra 246 (279)
T d1pvc1_ 210 MTVDDFGVLAVRVVNDHNPTKVTSKVRIYMKPKHVRV 246 (279)
T ss_dssp CCSSTTCEEEEEECSCCCSSCEEEEEEEEEEEEEEEE
T ss_pred cccCCceeEEEEEecCCCCceeeEEEEEEeeccccEE
Confidence 466789999999999876542 2 4776 68999986
No 7
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
Probab=37.17 E-value=12 Score=25.35 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=24.6
Q ss_pred eeeeEEEEeeCceeeeEEeeeecCceeeecCCCC
Q psy10916 46 MGKINLRVMHGGQATLHSIRVLQPKQVRVDSQDD 79 (137)
Q Consensus 46 ~Gkl~lrV~~gG~ATLhSIrVlQPKQvrVdS~Dn 79 (137)
-|+..||++|++.+..+.+.+-+--.+.|-+.|-
T Consensus 65 ~~~~RlRliNa~~~~~~~l~~~~g~~~~vIa~DG 98 (174)
T d1gska2 65 PRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDG 98 (174)
T ss_dssp SSEEEEEEEECCSSCCEEEEETTCCCEEEEEETT
T ss_pred CceEEEEEEecccCceeeEeecCCCcEEEEEECC
Confidence 3689999999999999999885432344455553
No 8
>d1bev1_ b.121.4.1 (1:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]}
Probab=37.11 E-value=12 Score=28.62 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=25.8
Q ss_pred chhhhheeeeEEEEeeCceeeeEEeee-ecCceeeec
Q psy10916 40 ATTAEMMGKINLRVMHGGQATLHSIRV-LQPKQVRVD 75 (137)
Q Consensus 40 AtT~EM~Gkl~lrV~~gG~ATLhSIrV-lQPKQvrVd 75 (137)
...+-+||.|-+|+++++.-++ .||| ++||.||+=
T Consensus 198 ~~p~N~mGtl~~R~v~~~~~~~-~vrVY~kpKhvraw 233 (268)
T d1bev1_ 198 ILPSNFLGFMYFRTLEDAAHQV-RFRIYAKIKHTSCW 233 (268)
T ss_dssp CCGGGCCCEEEEEESSCCSSCC-EEEEEEEEEEEEEE
T ss_pred cccccCceeEEEEEecCCCCcE-EEEEEEeecceEEE
Confidence 3456789999999998765544 3566 689998863
No 9
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]}
Probab=36.56 E-value=14 Score=28.30 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=25.6
Q ss_pred hhhhheeeeEEEEeeCceeee--EEeee-ecCceeee
Q psy10916 41 TTAEMMGKINLRVMHGGQATL--HSIRV-LQPKQVRV 74 (137)
Q Consensus 41 tT~EM~Gkl~lrV~~gG~ATL--hSIrV-lQPKQvrV 74 (137)
.+.-+||.|-+|++++...+- -.||| ++||.||.
T Consensus 194 ~~~N~mGtl~~R~vn~~~~~~~~~~vRiY~kpKhv~a 230 (269)
T d1fpn1_ 194 ANTNNMGSLCSRIVTEKHIHKVHIMTRIYHKAKHVKA 230 (269)
T ss_dssp TTTCCCCEEEEEECSCSCSCCEEEEEEEEEEEEEEEE
T ss_pred ccCCCCeEEEEEEecCCCCCceEEEEEEEEeccceEE
Confidence 456789999999998765522 23676 69999976
No 10
>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]}
Probab=35.21 E-value=13 Score=28.77 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=25.8
Q ss_pred hhhhheeeeEEEEeeCceee-e-EEeee-ecCceeeec
Q psy10916 41 TTAEMMGKINLRVMHGGQAT-L-HSIRV-LQPKQVRVD 75 (137)
Q Consensus 41 tT~EM~Gkl~lrV~~gG~AT-L-hSIrV-lQPKQvrVd 75 (137)
.+.-+||.|-+|++++.... . -.||| ++||.||+=
T Consensus 211 ~~~N~mGtl~~R~vn~~~~~~~~~~vRVY~kpKhvraW 248 (284)
T d1d4m1_ 211 NTLNNLGHIYVRHVSGSSPHPITSTIRVYFKPKHTRAW 248 (284)
T ss_dssp GGGCCCCEEEEEESSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred cccccceeEEEEEecCCCCceeeEEEEEEEeecceEEE
Confidence 46789999999999876542 2 24676 689999863
No 11
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=27.77 E-value=8.9 Score=23.16 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.0
Q ss_pred hhhcCCCcccccchhhhhhhhhhchhhhh
Q psy10916 17 YLKASIPTFQFGRGVKKELRSATATTAEM 45 (137)
Q Consensus 17 ~~~~~~~ekefgrGakkelkSATAtT~EM 45 (137)
.++|.+|-.|+ -|-..+|||+|.-.+.+
T Consensus 43 ~i~a~iP~~e~-~g~~~~Lrs~T~G~g~~ 70 (89)
T d2bv3a5 43 VIRAFVPLAEM-FGYATDLRSKTQGRGSF 70 (89)
T ss_dssp EEEEEEEGGGC-TTHHHHHHHTTTTCCEE
T ss_pred EEEEECCHHHH-hhHHHhhhhcCCCCEEE
Confidence 47888999998 59999999999876544
No 12
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=25.31 E-value=10 Score=27.49 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=13.6
Q ss_pred ceeeeEEeeeecCcee
Q psy10916 57 GQATLHSIRVLQPKQV 72 (137)
Q Consensus 57 G~ATLhSIrVlQPKQv 72 (137)
|+|.+|.+||.||---
T Consensus 92 ~v~~FHT~RVnqPsG~ 107 (166)
T d2v4ja2 92 GVAHFHTVRVAQPSGK 107 (166)
T ss_dssp GGSBCCEEEECCCTTC
T ss_pred CccccccccccCCCcc
Confidence 4799999999999654
No 13
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}
Probab=24.92 E-value=31 Score=22.58 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=17.7
Q ss_pred eeeEEEEeeCceeeeEEeeeec
Q psy10916 47 GKINLRVMHGGQATLHSIRVLQ 68 (137)
Q Consensus 47 Gkl~lrV~~gG~ATLhSIrVlQ 68 (137)
.+..||+++.|..+-+.+.+-.
T Consensus 83 ~~~RlRliNa~~~~~~~~~idg 104 (209)
T d1aoza2 83 KTYRIRIASTTALAALNFAIGN 104 (209)
T ss_dssp CEEEEEEEECCSSCEEEEEETT
T ss_pred CEEEEEEEecCCceeEEEEeCC
Confidence 4689999999998887776644
No 14
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.02 E-value=13 Score=26.96 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.5
Q ss_pred ceeeeEEeeeecCcee
Q psy10916 57 GQATLHSIRVLQPKQV 72 (137)
Q Consensus 57 G~ATLhSIrVlQPKQv 72 (137)
|+|-+|.+||.||---
T Consensus 90 ~v~hFHT~RVnqPsg~ 105 (166)
T d3c7ba2 90 EVEHFHTMRINQPSGW 105 (166)
T ss_dssp GGSBCEEEEECCCGGG
T ss_pred CccccccccccCCCcc
Confidence 3789999999999654
No 15
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.17 E-value=16 Score=21.85 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=25.6
Q ss_pred cchhhhhhh--hcchhhHHHHHHHHHHHhhhh
Q psy10916 80 HDSTREFLW--KRSSHIAHLVTEKLTSAARSL 109 (137)
Q Consensus 80 HdrTREfvW--~RS~~IAhlVsqKL~sAarsm 109 (137)
....+.++| -|++.+..-+-+|+.++++++
T Consensus 108 ~~~~~~~~~llsR~p~l~~e~~~~f~~~~~~~ 139 (156)
T d1beba_ 108 EPEQSLVCQCLVRTPEVDDEALEKFDKALKAL 139 (156)
T ss_dssp CGGGTCEEEEEESSSSCCHHHHHHHHHHHTTS
T ss_pred CCcceEEEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 455677889 999999999999999999986
No 16
>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}
Probab=21.39 E-value=36 Score=22.57 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=22.7
Q ss_pred eeeeEEEEeeCceeeeEEeeeecCceeeecCCCCc
Q psy10916 46 MGKINLRVMHGGQATLHSIRVLQPKQVRVDSQDDH 80 (137)
Q Consensus 46 ~Gkl~lrV~~gG~ATLhSIrVlQPKQvrVdS~DnH 80 (137)
-|+..||+++.|.+....++...-....|-+.|-.
T Consensus 58 ~~~~RlR~iNa~~~~~~~~~~~~g~~~~via~DG~ 92 (165)
T d1kv7a2 58 RGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 92 (165)
T ss_dssp EEEEEEEEEECCSSCCEEEEETTCCCEEEEEETTE
T ss_pred CcEEEEEEEEcccCceeeEEecCCCeEEEEEeCCc
Confidence 45779999999988877776643223444444444
Done!