RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10916
(137 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.14
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 23/87 (26%)
Query: 46 MGKINLR---VMHGGQATLHSIRV----------LQ-------PKQVRVDSQDDHDSTRE 85
M + R + HG + H + V LQ P+ + DD +T
Sbjct: 1 MDAYSTRPLTLSHG--SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 86 FLWKR-SSHIAHLVTEKLTSAARSLLQ 111
L + +++ LV +L
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLN 85
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 0.25
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 11/108 (10%)
Query: 21 SIPTFQFGRGVKKELRSATATTAEMMGKINLRVMHGGQAT-LHSIRVLQPKQVRVDSQDD 79
S+P G+G+ R ++ +N++ T I+ ++ ++
Sbjct: 1218 SVPAP--GKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENEL--EALKL 1273
Query: 80 HD-STR-----EFLWKRSSHIAHLVTEKLTSAARSLLQPIPSNTPHIP 121
EFL +R+ I + +L +A + P I
Sbjct: 1274 EAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIA 1321
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 27.2 bits (61), Expect = 1.9
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 22/79 (27%)
Query: 71 QVRVDSQDDHDSTREFLWKRSSHIAHLVT------------EKLTSAA-------RSLLQ 111
VR+ R+ RS+ I L+T E++ A
Sbjct: 91 HVRIVGIPRVIELRKI---RSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEF 147
Query: 112 PIPSNTPHIPLPPPPSRYP 130
P + + P+ P
Sbjct: 148 EWPEDEEMPEVLEMPTICP 166
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics,
protein structur initiative, midwest center for
structural genomics; 2.40A {Clostridium difficile 630}
Length = 148
Score = 26.2 bits (59), Expect = 2.7
Identities = 4/9 (44%), Positives = 7/9 (77%)
Query: 127 SRYPVYEED 135
+RYPV ++
Sbjct: 57 TRYPVCRKN 65
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus
RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio
parahaemolyticus}
Length = 130
Score = 25.8 bits (58), Expect = 3.7
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 127 SRYPVYEED 135
SR VY E
Sbjct: 40 SRPLVYSEQ 48
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl
diphosphate, magnesium, cyclization, lyase; HET: FPF;
1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A*
3cke_A*
Length = 320
Score = 26.3 bits (57), Expect = 3.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 109 LLQPIPSNTPHIPLPPPPSRYP 130
+ +P +N L PPPS +
Sbjct: 1 MKKPNGTNGASSSLEPPPSTFQ 22
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup
B}
Length = 156
Score = 25.9 bits (58), Expect = 3.9
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 127 SRYPVYEED 135
SR+PV ED
Sbjct: 72 SRFPVIGED 80
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP,
structural genomics, PSI-2, protein S initiative; HET:
MSE AMP; 2.00A {Bordetella parapertussis}
Length = 129
Score = 25.5 bits (57), Expect = 4.4
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 127 SRYPVYEED 135
SR+PVYE+D
Sbjct: 39 SRFPVYEDD 47
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme,
oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus
pantotrophus} PDB: 2c1u_A*
Length = 338
Score = 25.8 bits (57), Expect = 5.0
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 100 EKLTSAARSLLQPIPSNTPHIPLPPP-PSRYPVYEE 134
L A+ + + IP I P P+ E
Sbjct: 8 GALREEAKGVFEAIPEKMTAIKQTEDNPEGVPLTAE 43
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 25.5 bits (57), Expect = 5.1
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 127 SRYPVYEED 135
SR+PV +
Sbjct: 76 SRFPVCRNN 84
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics; HET: AMP; 2.00A {Salmonella
typhimurium}
Length = 127
Score = 25.5 bits (57), Expect = 5.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 127 SRYPVYEED 135
SR+PV ED
Sbjct: 37 SRFPVISED 45
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
AMP; 1.53A {Pseudomonas syringae}
Length = 136
Score = 25.1 bits (56), Expect = 6.2
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 127 SRYPVYEED 135
SRYPV E
Sbjct: 37 SRYPVIGES 45
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway,
glycoside hydrolase family 3 starch binding domain;
2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A*
2x2j_A*
Length = 1027
Score = 25.8 bits (56), Expect = 6.3
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 113 IPSNTPHIPLPPPPSRYPVYEE 134
+ T + Y V +
Sbjct: 446 QTNITCFLRNDNEGQDYEVNQT 467
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A
{Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A*
4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A*
4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A*
4ecy_A* 4ecz_A* ...
Length = 435
Score = 25.7 bits (56), Expect = 6.9
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 72 VRVDSQDDHDSTREFLWKRSSHIAHLVTEKLTSAARSLLQPIPSNTPHIPLPPP 125
V + Q D + +R + K++ A ++++ ++ PP
Sbjct: 371 VSIRVQGDKRLSSL---RRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPP 421
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold,
farnesyl diphosphate, metal-binding, lyase, magnesium;
HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A
3lgk_A 3lg5_A*
Length = 382
Score = 25.5 bits (55), Expect = 7.4
Identities = 13/59 (22%), Positives = 20/59 (33%)
Query: 76 SQDDHDSTREFLWKRSSHIAHLVTEKLTSAARSLLQPIPSNTPHIPLPPPPSRYPVYEE 134
S H L R SH+ H T+ ++ P P I P +P + +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVHAFPHGTTATPTAIAVPPSLRLPVIEAAFPRQLHPYWPK 61
>3fd3_A Chromosome replication initiation inhibitor prote; structural
genomics, LYSR, PSI-2, structure initiative; HET: MSE
P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Length = 208
Score = 25.1 bits (55), Expect = 9.4
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 88 WKRSSHIAHLVTEKLTSAARSLLQPI 113
+ ++ +T + AR +L P+
Sbjct: 182 NRLAAERLAGLTANMVGTARVVLMPV 207
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 25.2 bits (54), Expect = 9.5
Identities = 20/125 (16%), Positives = 39/125 (31%)
Query: 4 IVAILGHLMRMRVYLKASIPTFQFGRGVKKELRSATATTAEMMGKINLRVMHGGQATLHS 63
I++ H++R R Y + G + + T+ + + + L+
Sbjct: 202 ILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNH 261
Query: 64 IRVLQPKQVRVDSQDDHDSTREFLWKRSSHIAHLVTEKLTSAARSLLQPIPSNTPHIPLP 123
+ + Q + D RE + E+L L Q P + L
Sbjct: 262 VDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILR 321
Query: 124 PPPSR 128
PP +
Sbjct: 322 KPPGQ 326
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.386
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,042,829
Number of extensions: 105113
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 35
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)