RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10916
         (137 letters)



>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3,
           strain Sabin [TaxId: 12086]}
          Length = 279

 Score = 27.1 bits (60), Expect = 0.77
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 40  ATTAEMMGKINLRVMHGGQATLHSIRV---LQPKQVRV 74
           A T +  G + +RV++    T  + +V   ++PK VRV
Sbjct: 209 AMTVDDFGVLAVRVVNDHNPTKVTSKVRIYMKPKHVRV 246


>d1r1a1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
           1A (HRV-1A) [TaxId: 12134]}
          Length = 283

 Score = 25.2 bits (55), Expect = 2.7
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 40  ATTAEMMGKINLRVMHGGQATLHSIRV---LQPKQVRV 74
           +     MG I  R++   Q     I      + K  + 
Sbjct: 207 SVVTNDMGTICSRIVTEKQKLSVVITTHIYHKAKHTKA 244


>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 177

 Score = 24.4 bits (53), Expect = 5.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 108 SLLQPIPSNTPHIPLPPPPSRYP 130
            LL  +P     + LPPPP   P
Sbjct: 10  DLLTELPPPITDLTLPPPPLVIP 32


>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
           2 (HRV-2) [TaxId: 12130]}
          Length = 269

 Score = 24.0 bits (52), Expect = 6.7
 Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 40  ATTAEMMGKINLRVMHGGQATLHSIRV---LQPKQVRV 74
                 MG +  R++         I      + K V+ 
Sbjct: 193 TANTNNMGSLCSRIVTEKHIHKVHIMTRIYHKAKHVKA 230


>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 137

 Score = 23.6 bits (51), Expect = 8.1
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 100 EKLTSAARSLLQPIPSNTPHIPLPPPP 126
            ++  A   + +      P  P PPP 
Sbjct: 104 YRILGAVAKVREAFQPQEPDFPPPPPD 130


>d1ev11_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human
           echovirus 1 [TaxId: 46633]}
          Length = 281

 Score = 24.0 bits (52), Expect = 8.5
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 40  ATTAEMMGKINLRVMHGGQATLHSIRV---LQPKQVRV 74
            TT   MG++  R ++       +       +PK VR 
Sbjct: 210 FTTLNNMGQLFFRHVNKPNPAAITSVARIYFKPKHVRA 247


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,202
Number of extensions: 19218
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 9
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)