BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10918
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 22/191 (11%)
Query: 5 RLTLGRSLNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNK-TLHHNIAQGIIMTNQSL 62
+L + P KE D CD+V+ +PP + W+H + + + I+++N L
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYS--PTCKPHQQRVLGVAR-QEKVNI 119
++ + + G Y C G I GE N + V+ + PT + Q V A + V +
Sbjct: 158 QIRGIKKTDEGTYRCEG-RILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTL 216
Query: 120 SCEVDANPPDVKFSWT-----FNNSAETVNVAQAHILR--SGTLSVVAYSPNSELDYGTL 172
C+ D P+ SWT N E + HI S L++ N E +Y
Sbjct: 217 VCDADGF-PEPTMSWTKDGEPIENEEED---DEKHIFSDDSSELTIRNVDKNDEAEY--- 269
Query: 173 ICWGSNKIGHQ 183
+C NK G Q
Sbjct: 270 VCIAENKAGEQ 280
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 8/159 (5%)
Query: 19 EDSD-VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
ED D V F C+ Y W NN++L + + N++L L V R +Y C
Sbjct: 124 EDKDAVAFTCEPETQDATYL--WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKC 181
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW--- 134
N S++ LNV+Y P E +N+SC +NPP ++SW
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPP-AQYSWFVN 240
Query: 135 -TFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172
TF S + + + + SG+ + A++ ++ L+ T+
Sbjct: 241 GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTV 279
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 22/164 (13%)
Query: 19 EDSD-VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
ED D V F C+ A Y W N ++L + + N++L L V R A Y C
Sbjct: 480 EDKDAVAFTCEPEAQNTTYL--WWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVC 537
Query: 78 VGFNIEGDGESNAFFLNVMY---SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
N S+ L+V+Y +P P L A +N+SC +N P ++SW
Sbjct: 538 GIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGA---NLNLSCHSASN-PSPQYSW 593
Query: 135 TFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
N + Q H + L + +PN+ GT C+ SN
Sbjct: 594 RIN------GIPQQH---TQVLFIAKITPNNN---GTYACFVSN 625
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 40 WRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
W NN++L + + N++L L V R G Y C N S+ LNV+Y P
Sbjct: 322 WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP 381
Query: 100 TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
+++SC +NPP ++SW
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPP-AQYSW 415
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 6/158 (3%)
Query: 30 VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS-AGNYTCVGFNIEGDGES 88
VA P+ + W +N+ L N Q + N +L+++ V R S YTCV N EG
Sbjct: 550 VAGYPIDSIVWERDNRALPINRKQKV-FPNGTLIIENVERNSDQATYTCVAKNQEGYSAR 608
Query: 89 NAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA--ETVNVA 146
+ + VM P P + + + C V + WT + A E + +
Sbjct: 609 GSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGIT 668
Query: 147 QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
+ + R G++ + S G C N GHQ+
Sbjct: 669 TSRVGRRGSVLTIEAVEASHA--GNFTCHARNLAGHQQ 704
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 14/173 (8%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWR---------HNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
E+ V CD P+ ++ W+ +K+L I + SL ++ V
Sbjct: 14 ENGQVTLVCDAEG-EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
+G Y C + G G + +L++ Y+P +Q + +NISC+V +NPP
Sbjct: 73 SDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQT-IYYSWEGNPINISCDVKSNPP- 129
Query: 130 VKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + N +G ++ +P S+ D+G C +N IG
Sbjct: 130 ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 14/173 (8%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWR---------HNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
E+ V CD P+ ++ W+ +K+L I + SL ++ V
Sbjct: 14 ENGQVTLVCDAEG-EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
+G Y C + G G + +L++ Y+P +Q + +NISC+V +NPP
Sbjct: 73 SDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQT-IYYSWEGNPINISCDVKSNPP- 129
Query: 130 VKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + N +G ++ +P S+ D+G C +N IG
Sbjct: 130 ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 25 FDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82
F C + P+ K+ W +N+ + N ++ +L + +V + AG YTC N+
Sbjct: 25 FKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83
Query: 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAET 142
G +S + L V P + V + E C++ + P++K W + + E
Sbjct: 84 AGK-DSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGS-PEIKVLW-YKDETEI 140
Query: 143 VNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
++ + +++V+ S D G C N
Sbjct: 141 QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 12/177 (6%)
Query: 10 RSLNPDHI-KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+ L P I K+D ++C I P + KV W + + + + VL+ N
Sbjct: 103 KKLEPSRIVKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYN 161
Query: 69 R--QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTC--KPHQQRVLGVARQEKVNISCEVD 124
+ +G+YTC N S++ L V P KPH L A V++ CE+
Sbjct: 162 LSVEDSGDYTCEAHNAA-GSASSSTSLKVKEPPVFRKKPHPVETLKGA---DVHLECELQ 217
Query: 125 ANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
PP + SW + E + + I+ L+ + D G C SN +G
Sbjct: 218 GTPP-FQVSW-HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 25 FDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82
F C + P+ K+ W +N+ + N ++ +L + +V + AG YTC N+
Sbjct: 25 FKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83
Query: 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAET 142
G +A L V P + V + E C++ + P++K W + + E
Sbjct: 84 AGKDSCSA-QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS-PEIKVLW-YKDETEI 140
Query: 143 VNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
++ + +++V+ S D G C N
Sbjct: 141 QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 12/177 (6%)
Query: 10 RSLNPDHI-KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+ L P I K+D ++C I P + KV W + + + + VL+ N
Sbjct: 103 KKLEPSRIVKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYN 161
Query: 69 R--QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTC--KPHQQRVLGVARQEKVNISCEVD 124
+ +G+YTC N S++ L V P KPH L A V++ CE+
Sbjct: 162 LSVEDSGDYTCEAHNAA-GSASSSTSLKVKEPPVFRKKPHPVETLKGA---DVHLECELQ 217
Query: 125 ANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
PP + SW + E + + I+ L+ + D G C SN +G
Sbjct: 218 GTPP-FQVSW-HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 16/202 (7%)
Query: 10 RSLNPDHI-KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+ L P I K+D ++C I P + KV W + + + + VL+ N
Sbjct: 295 KKLEPSRIVKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYN 353
Query: 69 R--QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTC--KPHQQRVLGVARQEKVNISCEVD 124
+ +G+YTC N S++ L V P KPH L A V++ CE+
Sbjct: 354 LSVEDSGDYTCEAHNAA-GSASSSTSLKVKEPPVFRKKPHPVETLKGA---DVHLECELQ 409
Query: 125 ANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
PP + SW + E + + I+ L+ + D G C SN +G
Sbjct: 410 GTPP-FQVSW-HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467
Query: 185 VPCVFHIVSAVTFHPPFNQKLT 206
CV I + P F +KL+
Sbjct: 468 --CVGSIT--LKAPPRFVKKLS 485
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 25 FDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82
F C + P+ K+ W +N+ + N ++ +L + +V + AG YTC N+
Sbjct: 217 FKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 275
Query: 83 EGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAET 142
G +A L V P + V + E C++ + P++K W + + E
Sbjct: 276 AGKDSCSA-QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS-PEIKVLW-YKDETEI 332
Query: 143 VNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
++ + +++V+ S D G C N
Sbjct: 333 QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 14/166 (8%)
Query: 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGF 80
+ C + P + ++ W + L A + N SLV+ +V+ G YTC
Sbjct: 23 ITLQCKVDGTPEI-RIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAE 81
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQE---KVNISCEVDANPPDVKFSWTFN 137
N G S+A V+ P R L + V C ++ + P ++ SW +
Sbjct: 82 NSVGAVASSAVL--VIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEP-LQVSWYKD 138
Query: 138 NS--AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+ N+ + I TL ++ + G C SN +G
Sbjct: 139 GELLKDDANLQTSFIHNVATLQILQ---TDQSHVGQYNCSASNPLG 181
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS----LVLQRVNRQS 71
+ E V +C I A+PP K+ W+ NN+ + N + + + + L+++ VN++
Sbjct: 26 KVLEGDSVKLECQISAIPPP-KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKD 84
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ 105
AG YT N E+ N T +P+Q
Sbjct: 85 AGWYTVSAVN-----EAGVTTCNTRLDVTARPNQ 113
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 27 CDIVAVPPVYKVEWRHNNKTL--------HHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV 78
C +V + V +HNN L H+N Q ++ N L +V+ Q AGNY+CV
Sbjct: 208 CSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLN----LDQVDFQHAGNYSCV 263
Query: 79 GFNIEGDGESNAFF 92
N++G ++ FF
Sbjct: 264 ASNVQGKHSTSMFF 277
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 10/178 (5%)
Query: 14 PDHI-----KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
P H+ E+ V C++ P + + W+ N + + + + SL++ N
Sbjct: 11 PSHVMFPLDSEEKKVKLSCEVKGNPKPH-IRWKLNGTDVDIGMDFRYSVVDGSLLINNPN 69
Query: 69 R-QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
+ Q AG Y C+ N G S L Y K + + V R + + + C +
Sbjct: 70 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHS 129
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
++ ++W FN + + +G L + + D G C +N + + +V
Sbjct: 130 GELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS---DVGNYTCVVTNTVTNHKV 184
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVNR 69
+N H+ + V+++C P P Y+ W N L + + I Q +L + VN
Sbjct: 301 INDIHVAMEESVFWECKANGRPKPTYR--WLKNGDPL---LTRDRIQIEQGTLNITIVNL 355
Query: 70 QSAGNYTCVGFNIEG 84
AG Y CV N G
Sbjct: 356 SDAGMYQCVAENKHG 370
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 10/178 (5%)
Query: 14 PDHI-----KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
P H+ E+ V C++ P + + W+ N + + + + SL++ N
Sbjct: 12 PSHVMFPLDSEEKKVKLSCEVKGNPKPH-IRWKLNGTDVDIGMDFRYSVVDGSLLINNPN 70
Query: 69 R-QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
+ Q AG Y C+ N G S L Y K + + V R + + + C +
Sbjct: 71 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHS 130
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
++ ++W FN + + +G L + + D G C +N + + +V
Sbjct: 131 GELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS---DVGNYTCVVTNTVTNHKV 185
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVNR 69
+N H+ + V+++C P P Y+ W N L + + I Q +L + VN
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYR--WLKNGDPL---LTRDRIQIEQGTLNITIVNL 356
Query: 70 QSAGNYTCVGFNIEG 84
AG Y CV N G
Sbjct: 357 SDAGMYQCVAENKHG 371
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 33 PPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90
PP ++ W +N+TL + GI++ N++L ++RV ++ G YTC ++ G + A
Sbjct: 695 PP--QIMWFKDNETLVED--SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 750
Query: 91 FFL 93
FF+
Sbjct: 751 FFI 753
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 115 EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174
E + +SC NPP + W +N ET+ +L+ G ++ E D G C
Sbjct: 682 ESIEVSCTASGNPPP-QIMWFKDN--ETLVEDSGIVLKDGNRNLTIRRVRKE-DEGLYTC 737
Query: 175 WGSNKIGHQRVPCVFHIVSA 194
+ +G +V F I A
Sbjct: 738 QACSVLGCAKVEAFFIIEGA 757
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGNYTCVGF 80
+ C PP ++ W +N+TL + GI++ N++L ++RV ++ G YTC
Sbjct: 28 IEVSCTASGNPP-PQIMWFKDNETLVED--SGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 81 NIEGDGESNAFFL 93
++ G + AFF+
Sbjct: 85 SVLGCAKVEAFFI 97
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 115 EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174
E + +SC NPP + W +N ET+ +L+ G ++ E D G C
Sbjct: 26 ESIEVSCTASGNPPP-QIMWFKDN--ETLVEDSGIVLKDGNRNLTIRRVRKE-DEGLYTC 81
Query: 175 WGSNKIGHQRVPCVFHIVSA 194
+ +G +V F I A
Sbjct: 82 QACSVLGCAKVEAFFIIEGA 101
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 34 PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93
P + W+ + L + + I + L++ + AG Y CVG N+ G+ ES L
Sbjct: 140 PEPTISWKKDGSPLD-DKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAEL 198
Query: 94 NVMYSPT 100
V+ P+
Sbjct: 199 TVLERPS 205
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 5 RLTLGRSLNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNK-TLHHNIAQGIIMTNQSL 62
+L + P KE D CD+V+ +PP + W+H + + + I+++N L
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESN 89
++ + + G Y C G I GE N
Sbjct: 158 QIRGIKKTDEGTYRCEG-RILARGEIN 183
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 14 PDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNK-TLHHNIAQGIIMTNQSLVLQRVNRQS 71
P KE D CD+V+ +PP + W+H + + + I+++N L ++ + +
Sbjct: 10 PQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 67
Query: 72 AGNYTCVGFNIEGDGESN 89
G Y C G I GE N
Sbjct: 68 EGTYRCEG-RILARGEIN 84
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain
Of Nectin-1
Length = 95
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR 152
LNV Y P ++ V ++C+ DANPP ++ WT T+N + +
Sbjct: 1 LNVQYEPEVTIEGFDGNWYLQRTDVKLTCKADANPPATEYHWT------TLNGSLPKGVE 54
Query: 153 SGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+ ++ P + GT IC +N IG
Sbjct: 55 AQNRTLFFRGPITYSLAGTYICEATNPIG 83
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+K+ DV C + +P V W HN K L A +T+ LV++ V G Y
Sbjct: 321 VKQGQDVTIPCKVTGLP-APNVVWSHNAKPLSGGRA---TVTDSGLVIKGVKNGDKGYYG 376
Query: 77 CVGFNIEGD 85
C N GD
Sbjct: 377 CRATNEHGD 385
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA 140
N D + LNV Y P ++ V ++C+ DANPP ++ WT
Sbjct: 214 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWT----- 268
Query: 141 ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFH 198
T+N + + + ++ P + GT IC +N IG + +I A
Sbjct: 269 -TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALE 325
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA 140
N D + LNV Y P ++ V ++C+ DANPP ++ WT
Sbjct: 200 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWT----- 254
Query: 141 ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFH 198
T+N + + + ++ P + GT IC +N IG + +I A
Sbjct: 255 -TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALE 311
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA 140
N D + LNV Y P ++ V ++C+ DANPP ++ WT
Sbjct: 199 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWT----- 253
Query: 141 ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
T+N + + + ++ P + GT IC +N IG
Sbjct: 254 -TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 293
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSA 140
N D + LNV Y P ++ V ++C+ DANPP ++ WT
Sbjct: 199 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWT----- 253
Query: 141 ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
T+N + + + ++ P + GT IC +N IG
Sbjct: 254 -TLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 293
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 116 KVNISCEVDANPPDVKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174
+VNI+CEV A P SW + + N + I + + S + +P+SE D+G C
Sbjct: 35 QVNITCEVFAYP-SATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNC 93
Query: 175 WGSNKIGHQRVPCVFHIVSAVTFHPP 200
N+IG + + F +V A T P
Sbjct: 94 TAVNRIGQESLE--FILVQADTPSSP 117
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAG 73
++E DC + +P + W+ + K + + A +++ SL+++ V + AG
Sbjct: 21 VQEGKLCRMDCKVSGLP-TPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAG 79
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYS 98
YTC+ N G N+F L ++ +
Sbjct: 80 IYTCIATNRAGQ---NSFSLELVVA 101
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 22/175 (12%)
Query: 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81
++ F C P + W N K + N + +N L ++ + G Y C N
Sbjct: 21 EMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 79
Query: 82 IEGDGESNAFFLNVMYSPTCKPH--QQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNN 138
G+ E A FL V +PH Q + +V + C+ + P P++ T+
Sbjct: 80 KAGEDEKQA-FLQVF----VQPHIIQLKNETTYENGQVTLVCDAEGEPIPEI----TWKR 130
Query: 139 SAETVNVAQAHILRSGTLSVVAYSPNSEL--------DYGTLICWGSNKI-GHQR 184
+ + + G + V +S L D G C +++I GHQ+
Sbjct: 131 AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK 185
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 24/189 (12%)
Query: 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVL 64
+LT ++P K+ D C V+ P V W L+HN I N+ +L
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSW------LYHNEEVTTISDNRFAML 150
Query: 65 -------QRVNRQSAGNYTCVGFNIEGDGESN--AFFLNVMYSPTCKPHQQRVLGVA-RQ 114
+N+ G Y C G +E GE + + V P Q+ A R
Sbjct: 151 ANNNLQILNINKSDEGIYRCEG-RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG 209
Query: 115 EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-SGTLSVVAYSPNSELDYGTLI 173
E++ SC + P+ SW F N + + + +IL+ S T V NS D G +
Sbjct: 210 EEMTFSCRASGS-PEPAISW-FRN-GKLIEENEKYILKGSNTELTVRNIINS--DGGPYV 264
Query: 174 CWGSNKIGH 182
C +NK G
Sbjct: 265 CRATNKAGE 273
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81
++ F C P + W N K + N + +N L ++ + G Y C N
Sbjct: 211 EMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 269
Query: 82 IEGDGESNAFF 92
G+ E AF
Sbjct: 270 KAGEDEKQAFL 280
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 24/188 (12%)
Query: 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVL- 64
LT ++P K+ D C V+ P V W L+HN I N+ +L
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSW------LYHNEEVTTISDNRFAMLA 55
Query: 65 ------QRVNRQSAGNYTCVGFNIEGDGESN--AFFLNVMYSPTCKPHQQRVLGVA-RQE 115
+N+ G Y C G +E GE + + V P Q+ A R E
Sbjct: 56 NNNLQILNINKSDEGIYRCEG-RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE 114
Query: 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-SGTLSVVAYSPNSELDYGTLIC 174
++ SC + P+ SW F N + + + +IL+ S T V NS D G +C
Sbjct: 115 EMTFSCRASGS-PEPAISW-FRN-GKLIEENEKYILKGSNTELTVRNIINS--DGGPYVC 169
Query: 175 WGSNKIGH 182
+NK G
Sbjct: 170 RATNKAGE 177
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81
++ F C P + W N K + N + +N L ++ + G Y C N
Sbjct: 115 EMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 173
Query: 82 IEGDGESNAFF 92
G+ E AF
Sbjct: 174 KAGEDEKQAFL 184
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLI 173
+EKV ++C ANPP + W N + + + L +G L V +P D G+
Sbjct: 22 EEKVTLTCRARANPP-ATYRWKMNGTELKMGPDSRYRLVAGDL--VISNPVKAKDAGSYQ 78
Query: 174 CWGSNKIG 181
C +N G
Sbjct: 79 CVATNARG 86
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 3/129 (2%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQR-VNR 69
+L P+ E+ V C A PP W+ N L + LV+ V
Sbjct: 14 TLFPEGSAEEK-VTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKA 71
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
+ AG+Y CV N G S L + ++ + + V +C + P
Sbjct: 72 KDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPA 131
Query: 130 VKFSWTFNN 138
+ + W N
Sbjct: 132 LSYRWLLNE 140
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 71/181 (39%), Gaps = 29/181 (16%)
Query: 23 VYFDCDIVAVPPVYKVEWRHNNKTL--HHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCV 78
V F C A P + W N + H I GI + +Q SLV++ V GNYTCV
Sbjct: 33 VRFRCP-AAGNPTPSISWLKNGREFRGEHRIG-GIKLRHQQWSLVMESVVPSDRGNYTCV 90
Query: 79 GFNIEGDGESNAFFLNVMYSPTCKP--------HQQRVLGVARQEKVNISCEV--DANP- 127
N G + L+V+ +P +Q VLG V C+V DA P
Sbjct: 91 VENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLG----SDVEFHCKVYSDAQPH 145
Query: 128 ------PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN-SELDYGTLICWGSNKI 180
+V S + V V ++ I S V N SE D G +C +N I
Sbjct: 146 IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205
Query: 181 G 181
G
Sbjct: 206 G 206
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 90 AFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
+F L++ Y+P ++ VN+ C DANPP K W+
Sbjct: 203 SFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWS 248
>pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain
(D1-D3)
Length = 313
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 54 GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVAR 113
G + N SL + + + GNYTC+ S +L V+ P Q+V
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTG- 131
Query: 114 QEKVNIS-CEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVA---YSPNSELDY 169
E V ++ C P + +W ++ N +Q SGT++V + P+S++D
Sbjct: 132 -EPVPMARCVSTGGRPPAQITW-HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDG 189
Query: 170 GTLICWGSNKIGHQ 183
+ C K+ H+
Sbjct: 190 KNVTC----KVEHE 199
>pdb|2P24|B Chain B, I-AuMBP125-135
Length = 259
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
V+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 151 VISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 202
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWR--HNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGN 74
++ +DV F C + P Y + W HN K + + N L ++ V AG
Sbjct: 22 VRPGADVTFICTAKSKSPAYTLVWTRLHNGK-----LPSRAMDFNGILTIRNVQPSDAGT 76
Query: 75 YTCVGFNI 82
Y C G N+
Sbjct: 77 YVCTGSNM 84
>pdb|1K2D|B Chain B, Crystal Structure Of The Autoimmune Mhc Class Ii I-Au
Complexed With Myelin Basic Protein 1-11 At 2.2a
pdb|1U3H|D Chain D, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
pdb|1U3H|H Chain H, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
pdb|2Z31|D Chain D, Crystal Structure Of Immune Receptor Complex
Length = 189
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
V+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 99 VISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 150
>pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
pdb|1NN8|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|S Chain S, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|T Chain T, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 54 GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVAR 113
G + N SL + + + GNYTC+ S +L V+ P Q+V
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTG- 131
Query: 114 QEKVNIS-CEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVA---YSPNSELDY 169
E V ++ C P + +W ++ N +Q SGT++V + P+S++D
Sbjct: 132 -EPVPMARCVSTGGRPPAQITW-HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDG 189
Query: 170 GTLICWGSNKIGHQ 183
+ C K+ H+
Sbjct: 190 KNVTC----KVEHE 199
>pdb|2PXY|D Chain D, Crystal Structures Of Immune Receptor Complexes
Length = 189
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
V+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 98 VISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 149
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 17 IKEDSDVYFDC---DIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+KE V C DI A ++W N+++L + N L + + R+ AG
Sbjct: 122 VKELDSVTLTCLSNDIGA-----NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAG 176
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPT 100
Y C N SN+ L++++ P+
Sbjct: 177 EYQCEISNPVSVRRSNSIKLDIIFDPS 203
>pdb|1IAK|B Chain B, Histocompatibility Antigen I-Ak
pdb|1JL4|B Chain B, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
Length = 185
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
V+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 95 VISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 146
>pdb|1D9K|D Chain D, Crystal Structure Of Complex Between D10 Tcr And Pmhc
I-AkCA
pdb|1D9K|H Chain H, Crystal Structure Of Complex Between D10 Tcr And Pmhc
I-AkCA
Length = 188
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
V+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 98 VISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 149
>pdb|1MUJ|B Chain B, Crystal Structure Of Murine Class Ii Mhc I-Ab In Complex
With A Human Clip Peptide
Length = 197
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
V+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 101 VISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 152
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 14 PDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQRVNR 69
P+++ D + D V+ P V W N +T+ + +I++ + SL+ + V
Sbjct: 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71
Query: 70 QSAGNYTCVGFNIEGDG 86
AG Y CV N G+
Sbjct: 72 SDAGAYACVAKNRAGEA 88
>pdb|3RDT|D Chain D, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 217
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
V+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 127 VISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 178
>pdb|1LNU|B Chain B, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|D Chain D, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|F Chain F, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|H Chain H, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|3C5Z|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C60|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C6L|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 217
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
V+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 127 VISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 178
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 17 IKEDSDVYFDC---DIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+KE V C DI A ++W N+++L + N L + + R+ AG
Sbjct: 122 VKELDSVTLTCLSNDIGA-----NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAG 176
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSP 99
Y C N SN+ L++++ P
Sbjct: 177 EYQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 34 PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93
P V W + L N ++ ++ + SL + V ++ AG Y CV N G S L
Sbjct: 128 PKPSVSWIKGDSALREN-SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKL 186
Query: 94 NV 95
V
Sbjct: 187 EV 188
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 27/167 (16%)
Query: 37 KVEWRH----------NNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86
+VEW+ N + A + ++ + V R+ G YTC+ + +G
Sbjct: 32 RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCM---VSEEG 88
Query: 87 ESN----AFFLNVMYSPTCKPHQQRVLGVARQEKVNISC-EVDANPPDVKFSWTFNN-SA 140
N + L V+ P+ KP V + ++C E D +PP ++SW + S
Sbjct: 89 GQNYGEVSIHLTVLVPPS-KPTISVPSSVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISM 146
Query: 141 ETVNVAQAHILRSGTLSV------VAYSPNSELDYGTLICWGSNKIG 181
T + + + + ++ + + P + D G C N G
Sbjct: 147 LTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193
>pdb|1ES0|B Chain B, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
Length = 221
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 109 LGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 126 ISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 176
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)
Query: 37 KVEWR-----------HNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85
+VEW+ +NNK + + + + + V R+ G YTC+ G+
Sbjct: 35 RVEWKFDQGDTTRLVCYNNK-ITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGN 93
Query: 86 GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC-EVDANPPDVKFSWTFN------N 138
++ P KP + ++C E D +PP +++W + N
Sbjct: 94 SYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTN 152
Query: 139 SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
T + + + + T + + P S D G C N G
Sbjct: 153 PKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195
>pdb|3CUP|B Chain B, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
Length = 222
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 126 AISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 177
>pdb|3MBE|B Chain B, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|F Chain F, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 201
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 105 AISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 156
>pdb|1F3J|B Chain B, Histocompatibility Antigen I-Ag7
pdb|1F3J|E Chain E, Histocompatibility Antigen I-Ag7
Length = 187
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 96 AISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 147
>pdb|2IAD|B Chain B, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 205
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 115 AISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 166
>pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
Length = 222
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 108 VLGVARQEKVN----ISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSG 154
+ ++R E +N + C V D P +K W N ETV V+ ++R+G
Sbjct: 126 AISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNG 177
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 23 VYFDCDIVAVPPVYKVEWRHNNKTL--HHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCV 78
V F C A P + W N + H I GI + +Q SLV++ V GNYTCV
Sbjct: 141 VRFRCP-AAGNPTPSISWLKNGREFRGEHRIG-GIKLRHQQWSLVMESVVPSDRGNYTCV 198
Query: 79 GFNIEGDGESNAFFLNVMYSPTCKP--------HQQRVLGVARQEKVNISCEV--DANP 127
N G + L+V+ +P +Q VLG V C+V DA P
Sbjct: 199 VENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLG----SDVEFHCKVYSDAQP 252
>pdb|1I1A|D Chain D, Crystal Structure Of The Neonatal Fc Receptor Complexed
With A Heterodimeric Fc
pdb|1I1C|A Chain A, Non-Fcrn Binding Fc Fragment Of Rat Igg2a
pdb|1I1C|B Chain B, Non-Fcrn Binding Fc Fragment Of Rat Igg2a
Length = 239
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 103 PHQQRVLGVARQEKVN-ISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS---GTLSV 158
P + VLG KV + ++ N P+V+FSW F + E V+ AQ H TL
Sbjct: 23 PKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSW-FIDDVE-VHTAQTHAPEKQSNSTLRS 80
Query: 159 VAYSPNSELDY 169
V+ P E D+
Sbjct: 81 VSELPIVERDW 91
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 22/125 (17%)
Query: 37 KVEWRHNNKTLHHNIAQGIIMTNQSLVLQ--------------RVNRQSAGNYTCVGFNI 82
KV W HN + ++ +T + + LQ + G+ V +
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Query: 83 EGDGESNAFFLNVMYSPTCKPHQQRVLG-------VARQEKVNISCEVDANPPDVKFSWT 135
+ E+ A F + + + ++ RVLG + + +N++C V +PP + SW
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWL 257
Query: 136 FNNSA 140
N A
Sbjct: 258 KNEKA 262
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 19/166 (11%)
Query: 34 PVYKVEWRHNNKTL--HHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGDGESN 89
P+ + W N K H I G + NQ SL+++ V GNYTCV N G ++
Sbjct: 47 PMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INH 104
Query: 90 AFFLNVMYSPTCKPHQQRVL----GVARQEKVNISCEV--DANPPDVKFSWTFNNSAE-- 141
+ L+V+ +P Q L V C+V DA P N ++
Sbjct: 105 TYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164
Query: 142 -----TVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+ V + + S V+A +E D G IC SN IG
Sbjct: 165 PDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 19/166 (11%)
Query: 34 PVYKVEWRHNNKTL--HHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCVGFNIEGDGESN 89
P+ + W N K H I G + NQ SL+++ V GNYTCV N G ++
Sbjct: 47 PMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INH 104
Query: 90 AFFLNVMYSPTCKPHQQRVL----GVARQEKVNISCEV--DANPPDVKFSWTFNNSAE-- 141
+ L+V+ +P Q L V C+V DA P N ++
Sbjct: 105 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164
Query: 142 -----TVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+ V + + S V+A +E D G IC SN IG
Sbjct: 165 PDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 22/125 (17%)
Query: 37 KVEWRHNNKTLHHNIAQGIIMTNQSLVLQ--------------RVNRQSAGNYTCVGFNI 82
KV W HN + ++ +T + + LQ + G+ V +
Sbjct: 34 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93
Query: 83 EGDGESNAFFLNVMYSPTCKPHQQRVLG-------VARQEKVNISCEVDANPPDVKFSWT 135
+ E+ A F + + + ++ RVLG + + +N++C V +PP + SW
Sbjct: 94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWL 152
Query: 136 FNNSA 140
N A
Sbjct: 153 KNEKA 157
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV 78
E D +C + PP W + + + ++ +L++ V +G YTCV
Sbjct: 235 EGKDAVLECCVSGYPPP-SFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCV 293
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 55 IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKP 103
++ N SL LQRV G+YTC F D +S A L V +P KP
Sbjct: 67 LVQGNASLRLQRVRVTDEGSYTC--FVSIQDFDSAAVSLQVA-APYSKP 112
>pdb|2RGS|A Chain A, Fc-Fragment Of Monoclonal Antibody Igg2b From Mus Musculus
pdb|2RGS|B Chain B, Fc-Fragment Of Monoclonal Antibody Igg2b From Mus Musculus
Length = 218
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVN-ISCEVDANPPDVKFSWT 135
C N+EG G S F P+ + VL ++ KV + +V + PDV+ SW
Sbjct: 1 CPAPNLEG-GPSVFIF---------PPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWF 50
Query: 136 FNNSAETVNVAQAHILR---SGTLSVVAYSPNSELDY 169
NN V+ AQ R + T+ VV+ P D+
Sbjct: 51 VNNVE--VHTAQTQTHREDYNSTIRVVSTLPIQHQDW 85
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 34 PVYKVEWRHNNKTL--HHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCV 78
P+ + W N K H I G + NQ SL+++ V GNYTCV
Sbjct: 39 PMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCV 86
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
Length = 219
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 34 PVYKVEWRHNNKTL--HHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCV 78
P+ + W N K H I G + NQ SL+++ V GNYTCV
Sbjct: 38 PMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCV 85
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 34 PVYKVEWRHNNKTL--HHNIAQGIIMTNQ--SLVLQRVNRQSAGNYTCV 78
P+ + W N K H I G + NQ SL+++ V GNYTCV
Sbjct: 37 PMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCV 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,462,736
Number of Sequences: 62578
Number of extensions: 251892
Number of successful extensions: 668
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 107
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)