Query psy10918
Match_columns 207
No_of_seqs 186 out of 1442
Neff 11.9
Searched_HMMs 46136
Date Fri Aug 16 21:52:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 9.4E-27 2E-31 180.5 19.2 177 14-198 250-427 (1051)
2 KOG3513|consensus 100.0 9.9E-27 2.1E-31 180.4 19.1 180 8-194 334-516 (1051)
3 KOG4194|consensus 99.9 3.4E-24 7.3E-29 157.1 16.0 192 8-203 506-715 (873)
4 PHA02826 IL-1 receptor-like pr 99.9 1.1E-22 2.4E-27 137.5 15.3 160 9-180 26-211 (227)
5 KOG4221|consensus 99.9 4.5E-22 9.7E-27 155.2 19.4 182 7-194 142-328 (1381)
6 KOG4221|consensus 99.9 1.3E-22 2.9E-27 158.1 13.3 181 5-193 237-417 (1381)
7 KOG4194|consensus 99.9 4E-22 8.7E-27 146.4 14.2 181 7-193 614-797 (873)
8 PHA02785 IL-beta-binding prote 99.9 2.6E-20 5.5E-25 133.5 18.3 165 14-182 130-317 (326)
9 PHA02785 IL-beta-binding prote 99.9 4E-20 8.6E-25 132.5 16.4 161 12-184 33-204 (326)
10 KOG4222|consensus 99.8 2.6E-19 5.6E-24 139.4 11.8 180 9-195 135-316 (1281)
11 KOG4222|consensus 99.8 1.2E-18 2.6E-23 135.8 14.4 180 12-195 38-226 (1281)
12 cd05762 Ig8_MLCK Eighth immuno 99.8 1.1E-17 2.4E-22 99.1 11.3 90 107-200 8-97 (98)
13 cd05735 Ig8_DSCAM Eight immuno 99.7 1.2E-16 2.6E-21 92.9 10.9 84 114-200 1-88 (88)
14 cd05740 Ig_CEACAM_D4 Fourth im 99.7 4.4E-17 9.5E-22 95.1 9.1 85 8-95 6-90 (91)
15 cd05762 Ig8_MLCK Eighth immuno 99.7 4.2E-17 9E-22 96.6 8.8 91 8-100 3-95 (98)
16 cd05851 Ig3_Contactin-1 Third 99.7 6.8E-17 1.5E-21 94.0 9.4 81 11-95 7-87 (88)
17 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 1.4E-16 3E-21 92.1 10.3 80 109-189 5-84 (86)
18 cd05892 Ig_Myotilin_C C-termin 99.7 1.3E-16 2.7E-21 89.5 7.8 73 117-190 1-74 (75)
19 cd04975 Ig4_SCFR_like Fourth i 99.7 1.3E-16 2.9E-21 94.6 8.2 82 13-96 11-100 (101)
20 cd05737 Ig_Myomesin_like_C C-t 99.7 3.9E-16 8.5E-21 91.7 10.1 81 107-189 9-90 (92)
21 cd05745 Ig3_Peroxidasin Third 99.7 1.8E-16 4E-21 89.3 8.0 73 19-94 1-73 (74)
22 cd05724 Ig2_Robo Second immuno 99.7 4.7E-16 1E-20 90.5 9.4 82 12-94 3-85 (86)
23 cd05865 Ig1_NCAM-1 First immun 99.7 9.7E-16 2.1E-20 90.2 9.8 86 10-95 5-95 (96)
24 cd04975 Ig4_SCFR_like Fourth i 99.7 8.2E-16 1.8E-20 91.2 9.5 82 108-191 12-99 (101)
25 cd05863 Ig2_VEGFR-3 Second imm 99.7 2.5E-16 5.5E-21 86.0 6.7 66 117-192 1-66 (67)
26 cd05728 Ig4_Contactin-2-like F 99.7 4.3E-16 9.3E-21 90.1 8.1 82 9-94 3-84 (85)
27 cd05893 Ig_Palladin_C C-termin 99.7 3.9E-16 8.5E-21 87.7 7.6 73 117-190 1-74 (75)
28 cd05771 IgC_Tapasin_R Tapasin- 99.7 3.8E-15 8.3E-20 94.3 12.8 119 61-181 2-132 (139)
29 cd05867 Ig4_L1-CAM_like Fourth 99.7 6.3E-16 1.4E-20 87.5 8.2 74 20-95 1-75 (76)
30 cd05730 Ig3_NCAM-1_like Third 99.7 5.5E-16 1.2E-20 91.8 8.2 85 10-96 8-93 (95)
31 cd05865 Ig1_NCAM-1 First immun 99.7 1.6E-15 3.4E-20 89.3 9.7 82 110-191 11-95 (96)
32 cd05737 Ig_Myomesin_like_C C-t 99.7 8.1E-16 1.8E-20 90.4 8.4 79 13-93 9-90 (92)
33 cd05852 Ig5_Contactin-1 Fifth 99.7 8.3E-16 1.8E-20 85.9 7.5 72 114-190 1-72 (73)
34 cd05868 Ig4_NrCAM Fourth immun 99.6 1.4E-15 3E-20 86.0 8.1 75 114-191 1-75 (76)
35 cd05850 Ig1_Contactin-2 First 99.6 2.7E-15 5.9E-20 88.3 9.6 82 11-93 7-92 (94)
36 cd05852 Ig5_Contactin-1 Fifth 99.6 9.6E-16 2.1E-20 85.7 7.2 72 20-94 1-72 (73)
37 cd05735 Ig8_DSCAM Eight immuno 99.6 2.3E-15 4.9E-20 87.5 9.0 79 20-100 1-86 (88)
38 cd05859 Ig4_PDGFR-alpha Fourth 99.6 1.5E-15 3.3E-20 90.2 8.4 81 14-96 12-100 (101)
39 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.9E-15 4.1E-20 85.5 8.5 75 114-191 1-75 (76)
40 cd05744 Ig_Myotilin_C_like Imm 99.6 1.8E-15 3.9E-20 85.2 8.3 73 117-190 1-74 (75)
41 cd05745 Ig3_Peroxidasin Third 99.6 1E-15 2.3E-20 86.2 7.3 73 113-190 1-73 (74)
42 cd05848 Ig1_Contactin-5 First 99.6 2.6E-15 5.7E-20 88.3 9.2 74 19-93 18-92 (94)
43 cd05851 Ig3_Contactin-1 Third 99.6 2.3E-15 5E-20 87.5 8.8 79 107-191 9-87 (88)
44 cd05730 Ig3_NCAM-1_like Third 99.6 3.7E-15 8.1E-20 88.2 9.7 81 110-193 14-94 (95)
45 cd05857 Ig2_FGFR Second immuno 99.6 2.8E-15 6E-20 86.9 9.0 80 110-190 5-84 (85)
46 cd05868 Ig4_NrCAM Fourth immun 99.6 1.4E-15 3.1E-20 85.9 7.5 74 20-95 1-75 (76)
47 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2E-15 4.4E-20 89.7 8.3 83 109-192 13-100 (101)
48 cd05891 Ig_M-protein_C C-termi 99.6 4.3E-15 9.3E-20 87.1 9.6 83 106-189 8-90 (92)
49 cd04972 Ig_TrkABC_d4 Fourth do 99.6 7E-15 1.5E-19 86.0 10.5 81 108-190 9-89 (90)
50 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.6E-15 3.4E-20 87.7 7.6 79 14-94 4-85 (86)
51 cd05892 Ig_Myotilin_C C-termin 99.6 1.7E-15 3.7E-20 84.9 7.0 70 23-94 1-74 (75)
52 cd05748 Ig_Titin_like Immunogl 99.6 5.1E-15 1.1E-19 83.4 9.0 73 116-190 1-73 (74)
53 cd04968 Ig3_Contactin_like Thi 99.6 3.6E-15 7.8E-20 87.0 8.6 81 11-95 7-87 (88)
54 cd05866 Ig1_NCAM-2 First immun 99.6 5.5E-15 1.2E-19 86.2 9.2 84 10-95 5-91 (92)
55 cd07693 Ig1_Robo First immunog 99.6 8.4E-15 1.8E-19 87.7 10.2 85 10-95 6-99 (100)
56 cd05763 Ig_1 Subgroup of the i 99.6 3E-15 6.4E-20 84.6 7.6 74 117-191 1-74 (75)
57 cd05773 Ig8_hNephrin_like Eigh 99.6 2.4E-14 5.1E-19 86.6 12.0 82 113-197 22-108 (109)
58 cd05722 Ig1_Neogenin First imm 99.6 6.1E-15 1.3E-19 87.2 9.3 85 10-95 4-95 (95)
59 cd05752 Ig1_FcgammaR_like Frst 99.6 4.9E-15 1.1E-19 83.7 8.1 72 12-95 7-78 (78)
60 cd05893 Ig_Palladin_C C-termin 99.6 1.8E-15 3.9E-20 85.0 6.2 70 23-94 1-74 (75)
61 cd04978 Ig4_L1-NrCAM_like Four 99.6 4.5E-15 9.7E-20 84.2 7.9 74 20-95 1-75 (76)
62 cd05857 Ig2_FGFR Second immuno 99.6 4.2E-15 9.1E-20 86.2 7.9 78 16-95 5-85 (85)
63 cd05747 Ig5_Titin_like M5, fif 99.6 1.6E-14 3.4E-19 84.9 10.4 81 105-187 9-89 (92)
64 cd04973 Ig1_FGFR First immunog 99.6 6.4E-15 1.4E-19 83.9 8.4 70 13-86 2-71 (79)
65 cd05854 Ig6_Contactin-2 Sixth 99.6 5E-15 1.1E-19 85.4 8.0 78 21-99 1-85 (85)
66 cd05870 Ig5_NCAM-2 Fifth immun 99.6 1.6E-14 3.5E-19 85.8 10.4 82 108-190 10-97 (98)
67 cd04972 Ig_TrkABC_d4 Fourth do 99.6 4E-15 8.7E-20 87.1 7.6 81 12-94 7-89 (90)
68 cd05854 Ig6_Contactin-2 Sixth 99.6 1.4E-14 3.1E-19 83.5 9.8 78 115-192 1-82 (85)
69 cd04978 Ig4_L1-NrCAM_like Four 99.6 4.1E-15 8.8E-20 84.4 7.4 75 114-191 1-75 (76)
70 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.7E-14 3.6E-19 85.6 10.1 80 110-190 13-96 (97)
71 cd05749 Ig2_Tyro3_like Second 99.6 5.3E-15 1.1E-19 84.1 7.6 78 10-93 3-80 (81)
72 cd04968 Ig3_Contactin_like Thi 99.6 7.7E-15 1.7E-19 85.6 8.5 79 107-191 9-87 (88)
73 cd05863 Ig2_VEGFR-3 Second imm 99.6 3.4E-15 7.4E-20 81.5 6.5 65 23-95 1-65 (67)
74 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.7E-14 3.8E-19 85.6 9.8 81 109-190 11-95 (96)
75 cd05760 Ig2_PTK7 Second immuno 99.6 1.4E-14 3E-19 82.1 8.8 74 117-193 1-74 (77)
76 cd05726 Ig4_Robo Fhird immunog 99.6 1.5E-14 3.2E-19 84.6 9.2 81 114-196 1-86 (90)
77 cd05743 Ig_Perlecan_D2_like Im 99.6 1.3E-14 2.7E-19 82.6 8.7 75 114-190 1-75 (78)
78 cd04977 Ig1_NCAM-1_like First 99.6 1.3E-14 2.9E-19 85.0 8.9 84 9-94 4-91 (92)
79 cd05723 Ig4_Neogenin Fourth im 99.6 1.2E-14 2.5E-19 81.1 8.2 70 116-190 1-70 (71)
80 cd05853 Ig6_Contactin-4 Sixth 99.6 1.1E-14 2.4E-19 83.2 8.1 77 21-99 1-85 (85)
81 cd05747 Ig5_Titin_like M5, fif 99.6 1E-14 2.2E-19 85.7 8.2 76 10-86 8-85 (92)
82 cd04974 Ig3_FGFR Third immunog 99.6 1.3E-14 2.9E-19 84.8 8.7 77 114-191 1-89 (90)
83 cd05864 Ig2_VEGFR-2 Second imm 99.6 5.1E-15 1.1E-19 81.8 6.5 70 117-193 1-70 (70)
84 cd04969 Ig5_Contactin_like Fif 99.6 8.2E-15 1.8E-19 82.3 7.5 72 20-94 1-72 (73)
85 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 6.6E-15 1.4E-19 82.8 7.0 72 23-95 1-73 (74)
86 cd05866 Ig1_NCAM-2 First immun 99.6 2.4E-14 5.2E-19 83.5 9.5 73 109-183 10-82 (92)
87 cd05723 Ig4_Neogenin Fourth im 99.6 1.2E-14 2.7E-19 81.0 7.9 70 22-94 1-70 (71)
88 cd04976 Ig2_VEGFR Second immun 99.6 7.8E-15 1.7E-19 81.7 7.0 69 23-95 1-69 (71)
89 cd05760 Ig2_PTK7 Second immuno 99.6 1.5E-14 3.2E-19 82.0 8.2 73 23-96 1-75 (77)
90 cd05891 Ig_M-protein_C C-termi 99.6 1.1E-14 2.5E-19 85.3 8.0 74 12-86 8-84 (92)
91 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.3E-14 2.9E-19 86.1 8.3 82 12-95 9-97 (97)
92 cd07693 Ig1_Robo First immunog 99.6 4.3E-14 9.3E-19 84.6 10.5 85 106-191 8-99 (100)
93 PF07679 I-set: Immunoglobulin 99.6 8.4E-15 1.8E-19 85.9 7.2 86 8-95 3-90 (90)
94 PF07679 I-set: Immunoglobulin 99.6 2.5E-14 5.3E-19 83.9 9.1 82 107-190 8-89 (90)
95 cd05849 Ig1_Contactin-1 First 99.6 2.5E-14 5.3E-19 83.9 8.9 72 20-93 19-91 (93)
96 cd04976 Ig2_VEGFR Second immun 99.6 1E-14 2.2E-19 81.3 6.5 70 117-192 1-70 (71)
97 cd05853 Ig6_Contactin-4 Sixth 99.6 2E-14 4.3E-19 82.1 7.7 78 115-192 1-82 (85)
98 cd05744 Ig_Myotilin_C_like Imm 99.6 1.7E-14 3.8E-19 81.2 7.4 70 23-94 1-74 (75)
99 cd05876 Ig3_L1-CAM Third immun 99.6 1.6E-14 3.4E-19 80.6 7.2 70 23-95 1-70 (71)
100 cd05856 Ig2_FGFRL1-like Second 99.6 1.1E-14 2.4E-19 83.9 6.7 76 17-94 6-81 (82)
101 cd05726 Ig4_Robo Fhird immunog 99.6 4.9E-14 1.1E-18 82.5 9.2 77 20-98 1-84 (90)
102 cd05764 Ig_2 Subgroup of the i 99.6 3.9E-14 8.5E-19 79.8 8.5 73 114-190 1-73 (74)
103 cd05858 Ig3_FGFR-2 Third immun 99.6 4.6E-14 1E-18 82.5 9.0 77 114-191 1-89 (90)
104 cd04970 Ig6_Contactin_like Six 99.6 2.5E-14 5.4E-19 82.8 7.8 78 21-99 1-85 (85)
105 cd04969 Ig5_Contactin_like Fif 99.6 2.5E-14 5.4E-19 80.3 7.6 72 114-190 1-72 (73)
106 cd04970 Ig6_Contactin_like Six 99.6 5.3E-14 1.2E-18 81.4 9.2 81 115-197 1-85 (85)
107 cd05756 Ig1_IL1R_like First im 99.6 1.9E-14 4.2E-19 84.4 7.3 79 14-94 8-93 (94)
108 cd05870 Ig5_NCAM-2 Fifth immun 99.6 6.7E-14 1.4E-18 83.2 9.7 82 12-95 8-98 (98)
109 cd05864 Ig2_VEGFR-2 Second imm 99.6 2.5E-14 5.5E-19 79.0 7.2 60 23-86 1-60 (70)
110 cd05764 Ig_2 Subgroup of the i 99.6 4.1E-14 9E-19 79.7 8.2 72 20-94 1-73 (74)
111 cd05876 Ig3_L1-CAM Third immun 99.6 2.7E-14 5.9E-19 79.6 6.9 69 117-190 1-69 (71)
112 cd05732 Ig5_NCAM-1_like Fifth 99.6 3.4E-14 7.5E-19 84.3 7.8 81 12-94 8-95 (96)
113 cd04974 Ig3_FGFR Third immunog 99.5 4.1E-14 8.9E-19 82.7 7.8 74 20-95 1-89 (90)
114 cd05728 Ig4_Contactin-2-like F 99.5 5.8E-14 1.3E-18 81.2 8.3 78 107-190 7-84 (85)
115 cd05740 Ig_CEACAM_D4 Fourth im 99.5 1E-13 2.3E-18 80.9 9.2 71 108-184 12-82 (91)
116 cd05763 Ig_1 Subgroup of the i 99.5 5.8E-14 1.3E-18 79.3 7.7 71 23-95 1-74 (75)
117 cd05725 Ig3_Robo Third immunog 99.5 4.8E-14 1E-18 78.3 7.2 68 23-94 1-68 (69)
118 cd05855 Ig_TrkB_d5 Fifth domai 99.5 9E-14 1.9E-18 78.3 8.3 71 118-189 2-76 (79)
119 cd05748 Ig_Titin_like Immunogl 99.5 5.7E-14 1.2E-18 79.1 7.5 71 22-94 1-73 (74)
120 cd05746 Ig4_Peroxidasin Fourth 99.5 2.7E-14 5.8E-19 79.2 6.0 62 23-86 1-62 (69)
121 cd05725 Ig3_Robo Third immunog 99.5 6E-14 1.3E-18 77.9 7.2 68 117-190 1-68 (69)
122 cd05874 Ig6_NrCAM Sixth immuno 99.5 1E-13 2.2E-18 78.4 8.1 70 23-93 1-76 (77)
123 cd05753 Ig2_FcgammaR_like Seco 99.5 8.9E-14 1.9E-18 79.8 7.9 77 13-95 7-83 (83)
124 cd05724 Ig2_Robo Second immuno 99.5 2.2E-13 4.7E-18 79.1 9.7 73 108-184 5-78 (86)
125 cd05733 Ig6_L1-CAM_like Sixth 99.5 1.1E-13 2.3E-18 78.5 8.0 70 23-93 1-76 (77)
126 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.4E-13 3E-18 78.5 8.4 71 118-189 2-78 (81)
127 cd05773 Ig8_hNephrin_like Eigh 99.5 1.4E-13 3.1E-18 83.2 8.8 79 19-99 22-108 (109)
128 cd05746 Ig4_Peroxidasin Fourth 99.5 4.4E-14 9.6E-19 78.3 6.0 67 117-188 1-67 (69)
129 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 1.3E-13 2.9E-18 76.1 7.9 62 20-86 1-62 (69)
130 cd04977 Ig1_NCAM-1_like First 99.5 2.9E-13 6.2E-18 79.4 9.8 78 109-189 10-90 (92)
131 cd05743 Ig_Perlecan_D2_like Im 99.5 6E-14 1.3E-18 79.8 6.7 68 20-88 1-70 (78)
132 cd05758 Ig5_KIRREL3-like Fifth 99.5 4.7E-13 1E-17 79.6 10.4 80 109-188 11-96 (98)
133 cd05731 Ig3_L1-CAM_like Third 99.5 6.6E-14 1.4E-18 78.3 6.4 70 117-191 1-70 (71)
134 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 2.1E-13 4.5E-18 76.7 8.2 72 117-191 1-73 (74)
135 cd05855 Ig_TrkB_d5 Fifth domai 99.5 1.2E-13 2.6E-18 77.8 6.9 67 25-93 3-76 (79)
136 cd05734 Ig7_DSCAM Seventh immu 99.5 1.8E-13 3.9E-18 78.0 7.8 72 23-95 1-79 (79)
137 cd05856 Ig2_FGFRL1-like Second 99.5 1.6E-13 3.4E-18 79.0 7.7 75 111-189 6-80 (82)
138 cd04967 Ig1_Contactin First Ig 99.5 2.6E-13 5.6E-18 79.6 8.6 70 19-89 18-88 (91)
139 cd05875 Ig6_hNeurofascin_like 99.5 2.6E-13 5.6E-18 76.7 8.2 70 23-93 1-76 (77)
140 cd05750 Ig_Pro_neuregulin Immu 99.5 1.9E-13 4.2E-18 77.2 7.8 69 117-186 1-72 (75)
141 cd05736 Ig2_Follistatin_like S 99.5 3E-13 6.5E-18 76.6 8.5 73 117-191 1-73 (76)
142 cd05731 Ig3_L1-CAM_like Third 99.5 9.8E-14 2.1E-18 77.6 6.3 70 23-95 1-70 (71)
143 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 2.1E-13 4.6E-18 75.3 7.4 67 114-188 1-67 (69)
144 cd05848 Ig1_Contactin-5 First 99.5 3.6E-13 7.8E-18 79.3 8.8 68 113-184 18-86 (94)
145 cd05858 Ig3_FGFR-2 Third immun 99.5 2.8E-13 6.2E-18 79.2 8.3 74 20-95 1-89 (90)
146 cd04979 Ig_Semaphorin_C Immuno 99.5 2.5E-13 5.4E-18 79.3 8.0 82 13-96 4-87 (89)
147 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 2.1E-13 4.6E-18 77.7 7.3 62 24-86 2-72 (81)
148 cd07702 Ig2_VEGFR-1 Second imm 99.5 2.1E-13 4.5E-18 75.5 6.8 71 117-192 1-71 (72)
149 cd07702 Ig2_VEGFR-1 Second imm 99.5 1.3E-13 2.9E-18 76.3 5.9 59 23-83 1-59 (72)
150 cd04973 Ig1_FGFR First immunog 99.5 7.1E-13 1.5E-17 75.5 9.0 73 109-188 4-76 (79)
151 cd05898 Ig5_KIRREL3 Fifth immu 99.5 2E-12 4.4E-17 75.8 10.6 82 107-188 9-96 (98)
152 cd05895 Ig_Pro_neuregulin-1 Im 99.5 5.7E-13 1.2E-17 75.4 8.0 71 117-187 1-74 (76)
153 cd05722 Ig1_Neogenin First imm 99.5 9.8E-13 2.1E-17 77.8 9.1 72 108-183 8-86 (95)
154 cd05765 Ig_3 Subgroup of the i 99.5 4.3E-13 9.2E-18 77.0 7.4 74 114-189 1-79 (81)
155 cd05758 Ig5_KIRREL3-like Fifth 99.5 8.6E-13 1.9E-17 78.4 8.9 74 13-86 9-91 (98)
156 cd05850 Ig1_Contactin-2 First 99.5 9.5E-13 2.1E-17 77.5 8.8 67 114-184 19-86 (94)
157 cd05756 Ig1_IL1R_like First im 99.5 6.3E-13 1.4E-17 78.0 7.9 79 109-190 9-93 (94)
158 cd05742 Ig1_VEGFR_like First i 99.5 4.3E-13 9.2E-18 77.4 7.0 77 114-191 1-83 (84)
159 cd05873 Ig_Sema4D_like Immunog 99.5 4.5E-13 9.8E-18 76.8 7.0 68 12-82 3-70 (87)
160 cd05749 Ig2_Tyro3_like Second 99.5 6.8E-13 1.5E-17 75.5 7.6 70 106-184 5-74 (81)
161 KOG3515|consensus 99.5 1.2E-12 2.6E-17 100.5 11.1 170 6-180 9-186 (741)
162 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 1.9E-12 4.1E-17 74.5 9.5 79 114-193 1-82 (84)
163 cd05736 Ig2_Follistatin_like S 99.4 1.5E-12 3.4E-17 73.6 8.8 71 24-96 2-74 (76)
164 cd05752 Ig1_FcgammaR_like Frst 99.4 1.1E-12 2.4E-17 74.2 8.0 62 106-179 7-68 (78)
165 cd05733 Ig6_L1-CAM_like Sixth 99.4 7.7E-13 1.7E-17 74.9 7.1 66 117-184 1-70 (77)
166 cd05765 Ig_3 Subgroup of the i 99.4 1.1E-12 2.3E-17 75.3 7.5 73 20-94 1-80 (81)
167 cd05734 Ig7_DSCAM Seventh immu 99.4 1.4E-12 3E-17 74.4 7.7 65 117-183 1-70 (79)
168 cd05849 Ig1_Contactin-1 First 99.4 2.3E-12 5E-17 75.5 8.3 66 114-184 19-85 (93)
169 cd05729 Ig2_FGFR_like Second i 99.4 5E-12 1.1E-16 73.2 9.5 78 111-189 6-83 (85)
170 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 3.1E-12 6.7E-17 73.6 8.3 76 20-96 1-83 (84)
171 cd05750 Ig_Pro_neuregulin Immu 99.4 1.3E-12 2.9E-17 73.8 6.6 63 23-86 1-69 (75)
172 cd05727 Ig2_Contactin-2-like S 99.4 1.9E-12 4.1E-17 75.4 7.1 73 12-85 10-85 (96)
173 cd05875 Ig6_hNeurofascin_like 99.4 2.7E-12 5.9E-17 72.5 7.1 66 117-184 1-70 (77)
174 cd05874 Ig6_NrCAM Sixth immuno 99.4 2.5E-12 5.4E-17 72.7 6.9 66 117-184 1-70 (77)
175 cd05757 Ig2_IL1R_like Second i 99.4 3.1E-12 6.6E-17 74.6 7.1 69 15-86 5-78 (92)
176 cd05754 Ig3_Perlecan_like Thir 99.4 3.4E-12 7.3E-17 73.9 7.3 70 12-86 8-78 (85)
177 cd05729 Ig2_FGFR_like Second i 99.4 8.7E-12 1.9E-16 72.2 8.9 77 16-94 5-84 (85)
178 cd05882 Ig1_Necl-1 First (N-te 99.4 5.8E-12 1.3E-16 73.9 7.8 68 13-81 5-83 (95)
179 cd05742 Ig1_VEGFR_like First i 99.4 3E-12 6.5E-17 73.9 6.5 74 20-95 1-83 (84)
180 smart00408 IGc2 Immunoglobulin 99.4 8.8E-12 1.9E-16 67.7 7.9 62 19-83 1-62 (63)
181 cd04967 Ig1_Contactin First Ig 99.3 1.2E-11 2.6E-16 72.5 7.8 67 113-183 18-85 (91)
182 cd05895 Ig_Pro_neuregulin-1 Im 99.3 8.1E-12 1.8E-16 70.6 6.8 63 23-86 1-70 (76)
183 cd05754 Ig3_Perlecan_like Thir 99.3 1.1E-11 2.3E-16 71.7 7.4 74 107-188 9-83 (85)
184 cd05727 Ig2_Contactin-2-like S 99.3 2.7E-11 5.9E-16 70.5 8.2 72 108-183 12-86 (96)
185 cd05896 Ig1_IL1RAPL-1_like Fir 99.3 2E-11 4.4E-16 71.4 7.7 72 13-84 8-94 (104)
186 PHA02826 IL-1 receptor-like pr 99.3 2.3E-11 5E-16 82.8 9.1 75 7-82 131-210 (227)
187 cd07701 Ig1_Necl-3 First (N-te 99.3 2E-11 4.3E-16 71.9 7.6 69 13-82 5-84 (95)
188 cd05845 Ig2_L1-CAM_like Second 99.3 2.4E-11 5.2E-16 70.6 7.4 74 105-182 9-84 (95)
189 cd04979 Ig_Semaphorin_C Immuno 99.3 7.1E-11 1.5E-15 68.9 9.6 80 108-192 5-85 (89)
190 cd05871 Ig_Semaphorin_classIII 99.3 6.1E-11 1.3E-15 69.2 9.1 78 16-96 7-89 (91)
191 cd07701 Ig1_Necl-3 First (N-te 99.3 8.3E-11 1.8E-15 69.2 9.6 81 107-189 5-93 (95)
192 cd05873 Ig_Sema4D_like Immunog 99.3 5.6E-11 1.2E-15 68.2 8.6 68 107-180 4-71 (87)
193 cd05845 Ig2_L1-CAM_like Second 99.3 1.8E-11 3.8E-16 71.2 6.5 71 12-83 10-82 (95)
194 cd05885 Ig2_Necl-4 Second immu 99.3 5E-11 1.1E-15 67.0 7.9 64 23-86 2-69 (80)
195 cd05862 Ig1_VEGFR First immuno 99.3 5.8E-11 1.3E-15 68.6 8.4 78 114-191 1-84 (86)
196 cd05898 Ig5_KIRREL3 Fifth immu 99.3 8.5E-11 1.8E-15 69.0 9.0 75 12-86 8-91 (98)
197 PF00047 ig: Immunoglobulin do 99.3 1.5E-11 3.2E-16 67.2 5.5 59 20-79 1-64 (64)
198 cd05882 Ig1_Necl-1 First (N-te 99.3 2E-10 4.2E-15 67.5 10.5 69 109-178 7-83 (95)
199 PF13895 Ig_2: Immunoglobulin 99.3 1.5E-11 3.2E-16 70.3 5.3 72 15-95 9-80 (80)
200 cd05753 Ig2_FcgammaR_like Seco 99.3 4.4E-11 9.5E-16 68.6 7.2 65 110-183 10-74 (83)
201 cd05757 Ig2_IL1R_like Second i 99.3 4.8E-11 1E-15 69.6 7.3 73 110-188 6-83 (92)
202 cd05751 Ig1_LILRB1_like First 99.3 7.8E-11 1.7E-15 68.9 8.3 79 14-95 10-90 (91)
203 smart00408 IGc2 Immunoglobulin 99.2 9.3E-11 2E-15 63.5 7.2 63 113-181 1-63 (63)
204 cd05897 Ig2_IL1R2_like Second 99.2 9.7E-11 2.1E-15 68.3 7.5 70 15-85 5-80 (95)
205 cd05862 Ig1_VEGFR First immuno 99.2 1.6E-10 3.5E-15 66.7 8.2 76 20-96 1-85 (86)
206 PF00047 ig: Immunoglobulin do 99.2 1.4E-10 2.9E-15 63.3 7.5 62 114-176 1-64 (64)
207 smart00410 IG_like Immunoglobu 99.2 4.1E-10 9E-15 64.9 9.0 79 15-95 4-85 (86)
208 smart00409 IG Immunoglobulin. 99.2 4.1E-10 9E-15 64.9 9.0 79 15-95 4-85 (86)
209 cd05860 Ig4_SCFR Fourth immuno 99.2 5.4E-10 1.2E-14 65.2 8.4 83 13-96 11-100 (101)
210 cd05860 Ig4_SCFR Fourth immuno 99.1 1.5E-09 3.2E-14 63.4 10.0 84 107-190 11-98 (101)
211 cd07690 Ig1_CD4 First immunogl 99.1 1.4E-10 3E-15 67.7 5.5 66 17-83 4-88 (94)
212 cd05872 Ig_Sema4B_like Immunog 99.1 5.1E-10 1.1E-14 63.8 7.3 63 14-80 5-67 (85)
213 cd07690 Ig1_CD4 First immunogl 99.1 5.8E-10 1.2E-14 65.1 7.6 71 110-181 3-89 (94)
214 cd05759 Ig2_KIRREL3-like Secon 99.1 1.7E-09 3.7E-14 62.0 9.5 70 116-186 1-75 (82)
215 cd05717 Ig1_Necl-1-3_like Firs 99.1 9E-10 2E-14 65.0 8.1 70 13-83 5-85 (95)
216 smart00409 IG Immunoglobulin. 99.1 4.4E-09 9.5E-14 60.5 10.9 77 110-188 5-82 (86)
217 smart00410 IG_like Immunoglobu 99.1 4.4E-09 9.5E-14 60.5 10.9 77 110-188 5-82 (86)
218 cd05774 Ig_CEACAM_D1 First imm 99.1 1.6E-09 3.4E-14 64.7 8.9 73 12-85 5-95 (105)
219 PHA03376 BARF1; Provisional 99.1 1.1E-08 2.4E-13 65.7 12.7 125 14-141 20-165 (221)
220 cd05885 Ig2_Necl-4 Second immu 99.1 3.4E-09 7.4E-14 59.6 9.0 65 117-183 2-69 (80)
221 cd05883 Ig2_Necl-2 Second immu 99.1 2.4E-09 5.2E-14 60.4 8.4 75 23-97 2-81 (82)
222 cd05741 Ig_CEACAM_D1_like Firs 99.0 1.2E-09 2.6E-14 64.1 6.9 73 20-93 1-90 (92)
223 cd05871 Ig_Semaphorin_classIII 99.0 3.1E-09 6.7E-14 62.0 8.4 79 110-192 7-89 (91)
224 cd05717 Ig1_Necl-1-3_like Firs 99.0 6.6E-09 1.4E-13 61.3 10.0 71 109-180 7-85 (95)
225 PF13895 Ig_2: Immunoglobulin 99.0 7.9E-10 1.7E-14 63.0 5.7 60 110-181 10-69 (80)
226 cd05759 Ig2_KIRREL3-like Secon 99.0 3.9E-09 8.5E-14 60.5 7.8 62 22-84 1-70 (82)
227 cd05881 Ig1_Necl-2 First (N-te 99.0 3.6E-09 7.7E-14 61.8 7.3 68 13-81 5-83 (95)
228 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 5.6E-09 1.2E-13 61.2 7.6 76 109-186 10-99 (104)
229 cd05751 Ig1_LILRB1_like First 99.0 6.5E-09 1.4E-13 60.8 7.9 64 110-179 12-75 (91)
230 cd05846 Ig1_MRC-OX-2_like Firs 99.0 1.4E-08 3E-13 60.2 9.0 76 20-95 1-96 (97)
231 cd05897 Ig2_IL1R2_like Second 98.9 8E-09 1.7E-13 60.3 7.2 70 111-183 7-81 (95)
232 cd05775 Ig_SLAM-CD84_like_N N- 98.9 2.5E-09 5.3E-14 63.3 4.9 78 18-95 2-96 (97)
233 PF13927 Ig_3: Immunoglobulin 98.9 5.2E-09 1.1E-13 58.8 6.1 59 116-178 17-75 (75)
234 cd05887 Ig1_Nectin-3_like Firs 98.9 3E-08 6.4E-13 58.1 9.1 75 21-95 1-95 (96)
235 cd04983 IgV_TCR_alpha_like Imm 98.9 9.4E-09 2E-13 62.3 7.4 72 10-82 3-92 (109)
236 cd05900 Ig_Aggrecan Immunoglob 98.9 4.5E-08 9.9E-13 59.1 9.6 77 19-96 1-109 (112)
237 PF13927 Ig_3: Immunoglobulin 98.9 2.3E-09 5.1E-14 60.2 3.6 61 20-81 15-75 (75)
238 cd05899 IgV_TCR_beta Immunoglo 98.9 1.3E-08 2.9E-13 61.8 6.9 71 9-81 2-93 (110)
239 cd04980 IgV_L_kappa Immunoglob 98.9 1.9E-08 4E-13 60.7 7.5 74 8-81 3-92 (106)
240 cd05881 Ig1_Necl-2 First (N-te 98.9 7.1E-08 1.5E-12 56.4 9.5 69 109-178 7-83 (95)
241 cd05711 Ig_FcalphaRI Immunoglo 98.9 2.6E-08 5.5E-13 58.5 7.7 66 13-80 8-75 (94)
242 cd05877 Ig_LP_like Immunoglobu 98.9 4.1E-08 8.8E-13 59.2 8.8 77 19-96 1-103 (106)
243 cd05872 Ig_Sema4B_like Immunog 98.9 4.9E-08 1.1E-12 55.7 8.4 63 109-178 6-68 (85)
244 cd05718 Ig1_PVR_like First imm 98.9 4E-08 8.6E-13 58.4 8.4 74 21-95 1-97 (98)
245 cd05772 IgC_SIRP Signal-regula 98.8 8.5E-08 1.8E-12 57.9 9.1 85 97-182 4-94 (111)
246 cd05714 Ig_CSPGs_LP Immunoglob 98.8 4.6E-08 1E-12 58.9 7.8 77 19-96 1-103 (106)
247 cd05879 Ig_P0 Immunoglobulin ( 98.8 6.4E-08 1.4E-12 58.9 8.1 73 13-85 6-105 (116)
248 cd05880 Ig_EVA1 Immunoglobulin 98.8 1.2E-07 2.5E-12 58.0 8.9 82 13-94 6-114 (115)
249 cd04983 IgV_TCR_alpha_like Imm 98.8 1.2E-07 2.5E-12 57.5 8.8 72 108-180 7-93 (109)
250 cd05878 Ig_Aggrecan_like Immun 98.8 1.2E-07 2.6E-12 57.4 8.7 76 20-96 2-107 (110)
251 cd00099 IgV Immunoglobulin var 98.8 3.9E-08 8.4E-13 59.2 6.6 67 16-83 2-90 (105)
252 cd05755 Ig2_ICAM-1_like Second 98.8 9.5E-08 2.1E-12 56.2 7.9 74 12-85 8-87 (100)
253 cd05883 Ig2_Necl-2 Second immu 98.8 1.2E-07 2.5E-12 53.6 7.9 64 117-180 2-67 (82)
254 cd05877 Ig_LP_like Immunoglobu 98.8 1.2E-07 2.6E-12 57.1 8.5 79 113-191 1-102 (106)
255 PHA02987 Ig domain OX-2-like p 98.8 2E-07 4.3E-12 60.2 9.7 85 13-98 23-124 (189)
256 cd05888 Ig1_Nectin-4_like Frst 98.8 1.8E-07 3.8E-12 55.7 9.0 74 21-95 1-99 (100)
257 cd05714 Ig_CSPGs_LP Immunoglob 98.7 2.1E-07 4.6E-12 56.1 9.3 79 113-191 1-102 (106)
258 cd05715 Ig_P0-like Immunoglobu 98.7 2.6E-07 5.5E-12 56.6 9.4 74 12-85 5-105 (116)
259 cd05713 Ig_MOG_like Immunoglob 98.7 1.6E-07 3.4E-12 56.0 8.2 75 20-95 1-99 (100)
260 cd00098 IgC Immunoglobulin Con 98.7 7.4E-08 1.6E-12 56.8 6.7 70 113-182 12-87 (95)
261 cd05879 Ig_P0 Immunoglobulin ( 98.7 5.9E-07 1.3E-11 54.7 10.4 85 108-192 7-115 (116)
262 cd05899 IgV_TCR_beta Immunoglo 98.7 2.4E-07 5.2E-12 56.2 8.6 71 108-180 7-95 (110)
263 cd05900 Ig_Aggrecan Immunoglob 98.7 4.3E-07 9.3E-12 54.9 9.4 81 113-195 1-110 (112)
264 cd04984 IgV_L_lambda Immunoglo 98.7 8.3E-08 1.8E-12 56.9 6.3 65 16-81 2-84 (98)
265 cd05886 Ig1_Nectin-1_like Firs 98.7 4.4E-07 9.5E-12 53.6 9.1 35 60-95 63-98 (99)
266 cd05775 Ig_SLAM-CD84_like_N N- 98.7 2.5E-07 5.5E-12 54.7 7.7 78 113-192 3-95 (97)
267 cd05718 Ig1_PVR_like First imm 98.7 4E-07 8.8E-12 54.0 8.7 77 115-191 1-97 (98)
268 PF07686 V-set: Immunoglobulin 98.7 6.2E-08 1.3E-12 59.1 5.3 74 8-82 4-101 (114)
269 cd05878 Ig_Aggrecan_like Immun 98.7 6.4E-07 1.4E-11 54.2 9.5 79 113-191 1-106 (110)
270 cd05713 Ig_MOG_like Immunoglob 98.7 5E-07 1.1E-11 53.8 8.9 75 114-188 1-96 (100)
271 cd05889 Ig1_DNAM-1_like First 98.7 5.7E-07 1.2E-11 52.7 8.8 62 21-82 1-82 (96)
272 KOG3515|consensus 98.6 1.4E-07 3E-12 73.4 7.7 175 14-193 215-397 (741)
273 cd05761 Ig2_Necl-1-4_like Seco 98.6 8.7E-07 1.9E-11 50.6 9.1 65 117-183 2-71 (82)
274 cd05884 Ig2_Necl-3 Second immu 98.6 5.1E-07 1.1E-11 51.6 8.0 66 117-182 2-71 (83)
275 cd00098 IgC Immunoglobulin Con 98.6 1.1E-07 2.3E-12 56.1 5.4 67 18-84 11-86 (95)
276 cd07706 IgV_TCR_delta Immunogl 98.6 3.6E-07 7.8E-12 56.0 7.6 73 9-81 3-93 (116)
277 cd04980 IgV_L_kappa Immunoglob 98.6 4.4E-07 9.6E-12 54.6 7.9 72 108-179 9-93 (106)
278 cd07705 Ig2_Necl-1 Second immu 98.6 8E-07 1.7E-11 50.8 8.5 67 117-183 2-72 (83)
279 cd04982 IgV_TCR_gamma Immunogl 98.6 1.5E-07 3.3E-12 57.7 5.9 71 10-81 3-98 (116)
280 cd05741 Ig_CEACAM_D1_like Firs 98.6 5.5E-07 1.2E-11 52.7 8.0 66 114-181 1-81 (92)
281 cd07700 IgV_CD8_beta Immunoglo 98.6 2.9E-07 6.3E-12 55.5 6.8 65 16-80 2-92 (107)
282 cd05711 Ig_FcalphaRI Immunoglo 98.6 5.5E-07 1.2E-11 52.9 7.6 65 110-177 11-75 (94)
283 cd00099 IgV Immunoglobulin var 98.6 5.8E-07 1.3E-11 54.0 7.9 71 111-181 3-91 (105)
284 cd05761 Ig2_Necl-1-4_like Seco 98.6 5.4E-07 1.2E-11 51.5 7.3 61 23-85 2-70 (82)
285 cd05880 Ig_EVA1 Immunoglobulin 98.6 2.1E-06 4.5E-11 52.4 10.2 76 107-182 6-104 (115)
286 cd04982 IgV_TCR_gamma Immunogl 98.6 8.9E-07 1.9E-11 54.3 8.6 71 107-178 6-98 (116)
287 cd04984 IgV_L_lambda Immunoglo 98.6 7E-07 1.5E-11 53.0 7.8 68 111-179 3-85 (98)
288 cd07705 Ig2_Necl-1 Second immu 98.5 1.4E-06 2.9E-11 49.9 8.3 61 23-84 2-70 (83)
289 cd05884 Ig2_Necl-3 Second immu 98.5 8.4E-07 1.8E-11 50.7 7.1 61 23-83 2-69 (83)
290 cd05901 Ig_Versican Immunoglob 98.5 2.7E-06 5.8E-11 51.5 9.4 37 59-96 78-114 (117)
291 cd05774 Ig_CEACAM_D1 First imm 98.5 9.3E-07 2E-11 52.8 7.2 68 110-181 9-94 (105)
292 cd05715 Ig_P0-like Immunoglobu 98.5 6.6E-06 1.4E-10 50.4 10.8 76 107-182 6-105 (116)
293 cd05755 Ig2_ICAM-1_like Second 98.5 1.4E-06 3E-11 51.3 7.3 73 111-183 13-88 (100)
294 cd07699 IgC_L Immunoglobulin C 98.5 5.4E-07 1.2E-11 53.5 5.6 70 112-181 15-90 (100)
295 cd05887 Ig1_Nectin-3_like Firs 98.5 3.1E-06 6.6E-11 49.6 8.5 76 116-191 2-95 (96)
296 cd05902 Ig_Neurocan Immunoglob 98.5 1.4E-06 3E-11 52.5 7.2 76 20-96 2-107 (110)
297 cd05846 Ig1_MRC-OX-2_like Firs 98.4 3E-06 6.4E-11 50.1 8.2 77 114-190 1-95 (97)
298 cd05716 Ig_pIgR Immunoglobulin 98.4 3.5E-06 7.6E-11 49.9 8.4 71 110-180 3-87 (98)
299 smart00407 IGc1 Immunoglobulin 98.4 4E-06 8.6E-11 47.0 8.0 64 117-180 2-71 (75)
300 cd05716 Ig_pIgR Immunoglobulin 98.4 1.7E-06 3.8E-11 51.3 6.3 67 16-82 3-86 (98)
301 cd07700 IgV_CD8_beta Immunoglo 98.4 3.6E-06 7.7E-11 50.8 7.7 68 111-178 3-93 (107)
302 cd07698 IgC_MHC_I_alpha3 Class 98.4 7.6E-06 1.6E-10 48.0 8.4 68 114-181 14-84 (93)
303 cd05766 IgC_MHC_II_beta Class 98.3 1E-05 2.2E-10 47.4 8.6 70 113-182 13-85 (94)
304 cd05902 Ig_Neurocan Immunoglob 98.3 1.1E-05 2.3E-10 48.7 8.8 39 155-195 70-108 (110)
305 cd05766 IgC_MHC_II_beta Class 98.3 1.1E-05 2.3E-10 47.3 8.6 65 18-82 12-82 (94)
306 cd05888 Ig1_Nectin-4_like Frst 98.3 1.2E-05 2.7E-10 47.7 8.9 28 156-183 63-91 (100)
307 cd07696 IgC_CH3 CH3 domain (th 98.3 4.8E-06 1E-10 49.0 7.0 71 111-181 11-87 (96)
308 cd07706 IgV_TCR_delta Immunogl 98.3 7.6E-06 1.6E-10 50.1 8.1 72 108-179 8-94 (116)
309 cd05901 Ig_Versican Immunoglob 98.3 2.5E-05 5.5E-10 47.3 9.7 36 156-191 78-113 (117)
310 cd05886 Ig1_Nectin-1_like Firs 98.3 1.6E-05 3.4E-10 47.0 8.6 34 157-190 63-97 (99)
311 cd05847 IgC_CH2_IgE CH2 domain 98.3 4.2E-06 9.1E-11 49.0 6.0 70 113-182 13-88 (94)
312 cd04986 IgC_CH2 CH2 domain (se 98.3 3.5E-06 7.7E-11 49.5 5.6 70 111-181 16-90 (99)
313 PF07654 C1-set: Immunoglobuli 98.3 7.8E-06 1.7E-10 46.8 6.9 69 113-181 7-78 (83)
314 cd07699 IgC_L Immunoglobulin C 98.3 4.3E-06 9.4E-11 49.6 5.9 68 16-83 13-89 (100)
315 smart00407 IGc1 Immunoglobulin 98.3 9E-06 2E-10 45.6 6.9 60 23-82 2-70 (75)
316 cd05720 Ig_CD8_alpha Immunoglo 98.2 1.1E-05 2.3E-10 48.4 7.5 67 111-178 3-90 (104)
317 cd00096 Ig Immunoglobulin doma 98.2 4.6E-06 1E-10 45.6 5.6 60 23-83 1-66 (74)
318 cd07694 Ig2_CD4 Second immunog 98.2 2.3E-05 4.9E-10 44.5 7.9 64 14-81 8-72 (88)
319 cd04981 IgV_H Immunoglobulin ( 98.2 1.7E-05 3.6E-10 48.6 7.9 69 12-81 4-97 (117)
320 cd05770 IgC_beta2m Class I maj 98.2 3.1E-05 6.8E-10 45.1 8.6 67 113-180 14-83 (93)
321 cd05771 IgC_Tapasin_R Tapasin- 98.2 1.9E-05 4.2E-10 50.0 8.3 65 18-82 51-130 (139)
322 PF08205 C2-set_2: CD80-like C 98.2 1.9E-05 4.1E-10 45.9 7.6 69 114-182 14-86 (89)
323 cd05712 Ig_Siglec_N Immunoglob 98.2 1.2E-05 2.6E-10 49.5 7.0 70 12-81 6-101 (119)
324 cd05767 IgC_MHC_II_alpha Class 98.2 2.5E-05 5.5E-10 45.7 7.9 67 114-180 15-84 (94)
325 cd05772 IgC_SIRP Signal-regula 98.2 1.6E-05 3.5E-10 48.0 7.2 67 16-83 17-92 (111)
326 cd05770 IgC_beta2m Class I maj 98.2 5E-05 1.1E-09 44.3 8.9 65 18-82 13-82 (93)
327 PHA02987 Ig domain OX-2-like p 98.2 9.4E-05 2E-09 48.1 10.9 70 109-179 25-107 (189)
328 cd07697 IgC_TCR_gamma T cell r 98.2 1.1E-05 2.3E-10 47.4 6.1 68 113-180 15-85 (96)
329 cd07698 IgC_MHC_I_alpha3 Class 98.2 3.8E-05 8.2E-10 45.0 8.5 64 20-83 14-83 (93)
330 cd05769 IgC_TCR_beta T cell re 98.2 8.6E-06 1.9E-10 49.4 5.8 74 113-186 17-98 (115)
331 PF07686 V-set: Immunoglobulin 98.1 3E-05 6.5E-10 47.1 8.2 71 108-179 10-101 (114)
332 cd07694 Ig2_CD4 Second immunog 98.1 4E-05 8.7E-10 43.5 7.8 63 110-179 10-73 (88)
333 cd05720 Ig_CD8_alpha Immunoglo 98.1 5.4E-06 1.2E-10 49.7 4.6 64 16-80 2-89 (104)
334 cd00096 Ig Immunoglobulin doma 98.1 1.6E-05 3.6E-10 43.3 6.2 63 117-180 1-66 (74)
335 cd05767 IgC_MHC_II_alpha Class 98.1 4.2E-05 9.1E-10 44.7 7.7 61 19-82 14-83 (94)
336 cd07703 Ig2_Nectin-2_like Seco 98.1 4.5E-05 9.7E-10 44.7 7.7 73 116-190 17-92 (95)
337 cd05768 IgC_CH4 CH4 domain (fo 98.1 2E-05 4.3E-10 46.9 6.3 66 17-82 13-90 (102)
338 cd05768 IgC_CH4 CH4 domain (fo 98.1 1E-05 2.3E-10 48.1 5.1 69 113-181 15-92 (102)
339 cd05847 IgC_CH2_IgE CH2 domain 98.1 1.9E-05 4.1E-10 46.2 6.0 64 19-82 13-85 (94)
340 cd05889 Ig1_DNAM-1_like First 98.1 0.00011 2.4E-09 43.1 9.0 69 116-184 2-88 (96)
341 cd05769 IgC_TCR_beta T cell re 98.1 2.4E-05 5.2E-10 47.5 6.3 68 16-83 14-92 (115)
342 cd07691 Ig_CD3_gamma_delta Imm 98.0 2.8E-05 6.2E-10 41.7 5.5 60 20-97 6-65 (69)
343 cd05712 Ig_Siglec_N Immunoglob 98.0 9.2E-05 2E-09 45.5 8.7 74 106-179 6-102 (119)
344 KOG1480|consensus 98.0 2.6E-06 5.6E-11 66.0 1.8 185 5-194 24-221 (909)
345 cd07697 IgC_TCR_gamma T cell r 98.0 0.0001 2.3E-09 43.2 8.1 34 16-49 12-46 (96)
346 cd07692 Ig_CD3_epsilon Immunog 98.0 3.3E-05 7.1E-10 41.2 4.8 50 18-80 5-54 (65)
347 cd07696 IgC_CH3 CH3 domain (th 97.9 2.5E-05 5.4E-10 45.9 4.8 68 15-82 9-85 (96)
348 PF07654 C1-set: Immunoglobuli 97.9 8E-05 1.7E-09 42.6 6.8 63 18-83 6-77 (83)
349 cd05719 Ig2_PVR_like Second im 97.9 0.00025 5.4E-09 41.6 8.2 69 115-186 16-88 (95)
350 PF08205 C2-set_2: CD80-like C 97.9 5.8E-05 1.3E-09 43.8 5.5 63 20-83 14-84 (89)
351 cd04985 IgC_CH1 CH1 domain (fi 97.8 9.2E-05 2E-09 43.4 6.0 67 113-180 15-87 (95)
352 cd04981 IgV_H Immunoglobulin ( 97.8 0.00022 4.7E-09 43.7 8.0 72 107-178 5-97 (117)
353 PHA03376 BARF1; Provisional 97.8 0.00063 1.4E-08 44.4 9.8 71 110-180 22-110 (221)
354 KOG1480|consensus 97.8 2.1E-05 4.6E-10 61.2 3.7 91 8-99 132-222 (909)
355 cd07704 Ig2_Nectin-3-4_like Se 97.8 0.0002 4.4E-09 41.9 6.6 69 15-83 11-84 (97)
356 smart00406 IGv Immunoglobulin 97.7 0.00022 4.7E-09 40.3 6.4 23 154-176 59-81 (81)
357 cd07704 Ig2_Nectin-3-4_like Se 97.7 0.001 2.2E-08 39.0 9.0 71 110-182 12-86 (97)
358 smart00406 IGv Immunoglobulin 97.7 0.00014 3.1E-09 41.1 5.0 58 22-79 1-81 (81)
359 cd07703 Ig2_Nectin-2_like Seco 97.6 0.00059 1.3E-08 40.0 7.2 69 16-84 9-83 (95)
360 cd04986 IgC_CH2 CH2 domain (se 97.6 0.00027 5.9E-09 41.6 5.7 68 15-83 14-89 (99)
361 cd07692 Ig_CD3_epsilon Immunog 97.6 0.00027 5.9E-09 37.7 5.0 51 112-178 5-55 (65)
362 cd05719 Ig2_PVR_like Second im 97.6 0.00075 1.6E-08 39.6 7.4 61 23-84 18-83 (95)
363 PHA02633 hypothetical protein; 97.5 0.00037 8E-09 36.5 4.7 40 58-98 16-55 (63)
364 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.00057 1.2E-08 40.1 6.1 63 19-82 15-86 (95)
365 cd05721 IgV_CTLA-4 Immunoglobu 97.4 0.0017 3.6E-08 39.2 7.2 68 13-80 6-94 (115)
366 PHA03269 envelope glycoprotein 97.4 0.015 3.2E-07 43.7 13.1 117 61-180 290-417 (566)
367 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.0016 3.4E-08 35.1 5.8 49 114-178 6-54 (69)
368 cd07689 Ig2_VCAM-1 Second immu 97.3 0.0031 6.6E-08 36.9 6.8 71 111-181 12-87 (99)
369 cd07689 Ig2_VCAM-1 Second immu 97.2 0.0037 8E-08 36.6 6.7 67 15-82 10-85 (99)
370 PHA03270 envelope glycoprotein 97.0 0.077 1.7E-06 39.5 13.9 120 13-141 227-361 (466)
371 PF08204 V-set_CD47: CD47 immu 97.0 0.0016 3.4E-08 40.2 4.3 79 113-192 26-120 (130)
372 PHA02633 hypothetical protein; 97.0 0.0027 5.9E-08 33.3 4.2 37 158-194 19-55 (63)
373 PHA03270 envelope glycoprotein 96.9 0.11 2.4E-06 38.7 13.1 78 62-142 184-264 (466)
374 cd05721 IgV_CTLA-4 Immunoglobu 96.8 0.024 5.1E-07 34.3 8.2 68 110-177 9-94 (115)
375 PF08204 V-set_CD47: CD47 immu 96.8 0.0017 3.7E-08 40.1 3.4 64 18-82 25-107 (130)
376 PHA02982 hypothetical protein; 96.7 0.011 2.5E-07 39.2 6.6 73 111-183 36-126 (251)
377 PF07354 Sp38: Zona-pellucida- 96.6 0.0054 1.2E-07 42.3 4.9 49 34-83 12-60 (271)
378 PHA02982 hypothetical protein; 96.5 0.13 2.9E-06 34.4 11.2 116 16-139 35-172 (251)
379 PHA03042 CD47-like protein; Pr 96.4 0.05 1.1E-06 37.9 8.5 69 114-190 31-103 (286)
380 PHA03271 envelope glycoprotein 96.4 0.25 5.5E-06 36.8 13.5 119 61-181 208-336 (490)
381 PHA03273 envelope glycoprotein 96.4 0.27 5.9E-06 37.1 12.9 116 62-180 200-325 (486)
382 PF11465 Receptor_2B4: Natural 96.2 0.0061 1.3E-07 35.9 2.8 41 55-95 66-106 (108)
383 PHA03271 envelope glycoprotein 96.0 0.25 5.3E-06 36.8 10.5 37 13-49 253-291 (490)
384 PF07354 Sp38: Zona-pellucida- 95.9 0.032 7E-07 38.6 5.5 48 130-180 13-60 (271)
385 PHA03042 CD47-like protein; Pr 95.8 0.084 1.8E-06 36.8 7.4 61 19-84 30-94 (286)
386 PHA03273 envelope glycoprotein 95.7 0.65 1.4E-05 35.2 12.5 36 13-48 243-280 (486)
387 PHA03269 envelope glycoprotein 95.6 0.74 1.6E-05 35.2 14.6 37 13-49 335-373 (566)
388 KOG4597|consensus 95.6 0.024 5.3E-07 42.5 4.4 81 110-192 207-292 (560)
389 PHA02865 MHC-like TNF binding 95.5 0.082 1.8E-06 38.4 6.7 22 22-43 216-238 (338)
390 KOG0613|consensus 95.4 0.064 1.4E-06 45.2 6.5 129 60-189 278-425 (1205)
391 PHA02865 MHC-like TNF binding 94.6 0.16 3.5E-06 36.9 6.1 22 116-137 216-238 (338)
392 PHA02914 Immunoglobulin-like d 94.3 0.48 1E-05 35.2 7.9 84 15-100 21-119 (500)
393 PF06328 Lep_receptor_Ig: Ig-l 94.3 0.11 2.4E-06 30.0 4.0 68 12-79 10-81 (89)
394 KOG1026|consensus 94.2 0.31 6.8E-06 39.5 7.4 158 15-188 202-359 (774)
395 PHA02914 Immunoglobulin-like d 93.9 2 4.3E-05 32.1 13.1 161 13-181 272-468 (500)
396 PF11465 Receptor_2B4: Natural 93.0 0.35 7.7E-06 28.7 4.5 34 158-192 72-105 (108)
397 KOG4597|consensus 92.9 0.19 4E-06 38.1 4.0 80 14-95 205-291 (560)
398 PF05790 C2-set: Immunoglobuli 92.8 0.63 1.4E-05 26.3 5.2 19 159-177 45-63 (80)
399 TIGR00864 PCC polycystin catio 92.2 11 0.00024 36.0 16.5 158 17-193 1965-2126(2740)
400 PHA03052 Hypothetical protein; 91.3 1.4 3E-05 23.8 5.1 35 13-48 5-42 (69)
401 PF11049 KSHV_K1: Glycoprotein 89.1 2.2 4.7E-05 22.9 4.6 43 24-80 2-44 (71)
402 PF02124 Marek_A: Marek's dise 89.1 5.5 0.00012 27.2 10.7 96 36-140 7-116 (211)
403 PF03921 ICAM_N: Intercellular 88.5 3.4 7.3E-05 24.1 7.6 82 9-100 7-90 (91)
404 PF06328 Lep_receptor_Ig: Ig-l 87.4 4 8.7E-05 23.6 7.1 65 110-177 14-82 (89)
405 PF05790 C2-set: Immunoglobuli 86.9 4 8.6E-05 23.1 6.4 22 59-80 42-63 (80)
406 cd05890 Ig2_Nectin-1_like Seco 86.5 4.8 0.0001 23.6 6.8 69 116-189 22-96 (98)
407 PHA03189 UL14 tegument protein 85.3 7.7 0.00017 28.0 7.0 21 12-32 59-79 (348)
408 PHA03240 envelope glycoprotein 84.8 2.5 5.5E-05 28.6 4.3 65 11-76 29-121 (258)
409 cd05890 Ig2_Nectin-1_like Seco 84.3 6.3 0.00014 23.1 6.3 70 23-94 23-97 (98)
410 PHA03052 Hypothetical protein; 82.3 6.1 0.00013 21.4 4.6 35 107-141 5-41 (69)
411 KOG0613|consensus 77.5 7.7 0.00017 33.8 5.6 158 14-176 343-512 (1205)
412 PHA03283 envelope glycoprotein 71.9 48 0.001 26.3 12.1 37 60-97 134-170 (542)
413 PHA03112 IL-18 binding protein 70.6 25 0.00054 22.4 6.5 27 18-44 36-63 (141)
414 PHA03282 envelope glycoprotein 68.5 25 0.00055 27.3 6.0 26 55-80 119-144 (540)
415 PHA03112 IL-18 binding protein 68.2 28 0.00062 22.2 6.4 73 112-184 36-123 (141)
416 PHA03189 UL14 tegument protein 68.0 45 0.00098 24.4 8.0 18 163-180 139-156 (348)
417 PHA03240 envelope glycoprotein 67.3 16 0.00034 25.0 4.3 22 155-176 103-124 (258)
418 PF06832 BiPBP_C: Penicillin-B 66.9 22 0.00047 20.4 7.4 54 22-86 31-84 (89)
419 PF03921 ICAM_N: Intercellular 62.4 29 0.00063 20.3 9.8 80 107-198 11-90 (91)
420 PF01688 Herpes_gI: Alphaherpe 60.1 29 0.00064 22.7 4.5 21 61-81 125-145 (161)
421 PF02440 Adeno_E3_CR1: Adenovi 59.4 26 0.00057 18.8 5.0 21 17-42 2-22 (63)
422 COG5475 Uncharacterized small 55.4 21 0.00046 18.5 2.6 23 62-86 20-42 (60)
423 PHA03282 envelope glycoprotein 55.3 41 0.00089 26.3 5.1 29 159-187 126-154 (540)
424 KOG0200|consensus 55.1 1.2E+02 0.0026 25.0 10.3 112 59-181 12-141 (609)
425 PF02480 Herpes_gE: Alphaherpe 52.9 6.8 0.00015 30.3 0.9 39 59-97 88-126 (439)
426 PF02010 REJ: REJ domain; Int 50.8 19 0.00041 27.8 3.1 112 22-137 2-125 (440)
427 KOG3611|consensus 48.2 52 0.0011 27.7 5.1 57 23-82 572-634 (737)
428 COG4953 PbpC Membrane carboxyp 42.8 1.8E+02 0.0039 24.3 7.0 55 23-88 672-726 (733)
429 PHA03290 envelope glycoprotein 41.9 92 0.002 23.2 5.0 35 61-96 130-164 (357)
430 PHA03283 envelope glycoprotein 41.8 91 0.002 24.9 5.2 38 156-195 133-170 (542)
431 PHA03286 envelope glycoprotein 41.2 65 0.0014 25.1 4.3 37 60-96 127-163 (492)
432 PHA02935 Hypothetical protein; 40.6 64 0.0014 21.9 3.8 35 62-96 104-138 (349)
433 PF11141 DUF2914: Protein of u 39.9 63 0.0014 17.4 7.5 61 127-191 4-65 (66)
434 PHA03289 envelope glycoprotein 37.3 99 0.0022 22.9 4.5 35 61-96 123-157 (352)
435 PF10430 Ig_Tie2_1: Tie-2 Ig-l 37.0 87 0.0019 18.2 4.1 65 16-80 11-83 (96)
436 TIGR00864 PCC polycystin catio 35.5 4.9E+02 0.011 26.4 19.0 113 13-137 1875-1990(2740)
437 PHA03292 envelope glycoprotein 32.2 1.5E+02 0.0031 22.7 4.8 22 60-81 128-149 (413)
438 PHA03281 envelope glycoprotein 29.9 2.4E+02 0.0052 22.9 5.8 39 59-97 297-335 (642)
439 PF01688 Herpes_gI: Alphaherpe 29.8 1.7E+02 0.0037 19.3 4.8 23 158-180 125-147 (161)
440 PF10572 UPF0556: Uncharacteri 29.7 1.3E+02 0.0027 19.7 3.7 15 167-181 70-84 (158)
441 PHA03286 envelope glycoprotein 28.4 2.4E+02 0.0051 22.3 5.5 32 156-187 126-157 (492)
442 PF09085 Adhes-Ig_like: Adhesi 27.8 1.4E+02 0.003 17.7 3.6 37 13-49 9-49 (110)
443 PF00801 PKD: PKD domain; Int 26.4 1.1E+02 0.0024 16.2 5.3 27 111-138 8-34 (69)
444 PF13220 DUF4028: Protein of u 26.0 77 0.0017 16.2 1.9 17 167-183 8-24 (65)
445 PF12988 DUF3872: Domain of un 24.2 2E+02 0.0044 18.3 6.2 33 10-42 37-73 (137)
446 PF07705 CARDB: CARDB; InterP 23.0 1.6E+02 0.0035 16.7 5.6 39 9-47 7-49 (101)
447 PHA03292 envelope glycoprotein 22.9 3.6E+02 0.0077 20.8 5.4 37 158-194 129-165 (413)
448 PF04668 Tsg: Twisted gastrula 22.7 30 0.00065 21.8 0.1 9 37-45 101-109 (132)
449 KOG3486|consensus 21.8 1.1E+02 0.0024 17.3 2.1 19 174-192 17-37 (83)
450 PF06214 SLAM: Signaling lymph 21.7 69 0.0015 19.5 1.4 28 53-80 96-123 (126)
451 PHA03290 envelope glycoprotein 20.6 3.8E+02 0.0083 20.2 5.2 24 157-180 129-152 (357)
No 1
>KOG3513|consensus
Probab=99.95 E-value=9.4e-27 Score=180.53 Aligned_cols=177 Identities=16% Similarity=0.285 Sum_probs=143.2
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCcc-ccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT-LHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
......|+.|.|.|.+.|+|.| +|.|.|.+.. +.. .......+..|.|.+++.+|.|.|.|.+.|..|.. .....
T Consensus 250 ~~~a~~G~~v~LECfA~G~P~P-~i~W~k~~g~~~~~--r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~ 325 (1051)
T KOG3513|consen 250 TETALKGQSVKLECFALGNPTP-QIKWRKVDGKPPPR--RATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGH 325 (1051)
T ss_pred cccccCCCeEEEEEEecCCCCC-cEEEEeCCCCCCCc--ceeeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEE
Confidence 4455679999999999999998 9999998774 332 22334446789999999999999999999999965 66888
Q ss_pred EEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 93 l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
++|..+|.... .+....+..|+.+.|.|.+.|.|.| +++|++||..+.............+ .|.|.+++..|+|.|
T Consensus 326 v~v~a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p-~v~WlkNg~pl~~~~r~~~~~i~~g--~L~is~v~~~dsg~Y 401 (1051)
T KOG3513|consen 326 VTVYAPPYWLQ-KPQDTEADTGSNVTLECKASGKPNP-TVKWLKNGEPLEPAERDPRYKIDDG--TLIISNVQESDSGVY 401 (1051)
T ss_pred EEEecCchhhc-ccceeEecCCCCeEEEEEecCCCCC-ceEEeeCCeecCccCCCcceEEeCC--EEEEEecccccCeEE
Confidence 99999988775 4556667789999999999999998 9999999988764333222333333 489999999999999
Q ss_pred EEEEecCCCCCccceEEEEeecccCC
Q psy10918 173 ICWGSNKIGHQRVPCVFHIVSAVTFH 198 (207)
Q Consensus 173 ~C~~~n~~g~~~~~~~~~v~~~~~~~ 198 (207)
.|.|.|..|....++.|.|+...|..
T Consensus 402 QC~A~Nk~G~i~anA~L~V~a~~P~f 427 (1051)
T KOG3513|consen 402 QCIAENKYGTIYANAELKVLASAPVF 427 (1051)
T ss_pred EeeeecccceEeeeeEEEEEccCCCC
Confidence 99999999999889999888654433
No 2
>KOG3513|consensus
Probab=99.95 E-value=9.9e-27 Score=180.40 Aligned_cols=180 Identities=22% Similarity=0.335 Sum_probs=147.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc-cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI-AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
|...+++.++..|++++|.|.+.+.|.+ .++|++||.++...+ ..+.....+.|.|.+++..|+|.|.|.+.|..|..
T Consensus 334 w~~~~~d~~~~~gs~v~~eC~a~g~P~p-~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i 412 (1051)
T KOG3513|consen 334 WLQKPQDTEADTGSNVTLECKASGKPNP-TVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTI 412 (1051)
T ss_pred hhcccceeEecCCCCeEEEEEecCCCCC-ceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceE
Confidence 3445677888999999999999999998 999999999998533 34466778899999999999999999999999988
Q ss_pred ccceEEEEEEeC-CcccCCCCc-eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecC
Q psy10918 87 ESNAFFLNVMYS-PTCKPHQQR-VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 87 ~~~~~~l~v~~~-~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 164 (207)
.+ .+.|+|+.. |.+...... ...+..|..+.+.|...+.|.+ .+.|.+.+. ......+..+..+|+ |.|.++
T Consensus 413 ~a-nA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p-~~~W~k~~~-~~~~~~r~~i~edGt---L~I~n~ 486 (1051)
T KOG3513|consen 413 YA-NAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP-KVSWLKGGE-KLLQSGRIRILEDGT---LEISNV 486 (1051)
T ss_pred ee-eeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc-eEEEEcCCc-ccccCceEEECCCCc---EEeccc
Confidence 55 677999865 555433322 2345689999999999999998 999999887 344455666777776 899999
Q ss_pred CCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 165 SELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
+.+|+|.|+|.|.|.+|.......|.|+.+
T Consensus 487 t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~ 516 (1051)
T KOG3513|consen 487 TRSDAGKYTCVAENKLGKAESTGNLIVKDA 516 (1051)
T ss_pred CcccCcEEEEEEEcccCccceEEEEEEecC
Confidence 999999999999999999988877766643
No 3
>KOG4194|consensus
Probab=99.93 E-value=3.4e-24 Score=157.10 Aligned_cols=192 Identities=17% Similarity=0.297 Sum_probs=147.2
Q ss_pred eeeecCCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCC---eE--e----------cCCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG---II--M----------TNQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~---~~--~----------~~~~l~i~~~~~~d 71 (207)
+...+.......|++++|+|.+.+ ...|..+.|.+++.......... +. . -.+.|.+.+++..|
T Consensus 506 I~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td 585 (873)
T KOG4194|consen 506 IVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTD 585 (873)
T ss_pred eecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeeccc
Confidence 334455566677999999999966 23344999999886444311100 00 0 01349999999999
Q ss_pred CeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc--ceeE
Q psy10918 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV--AQAH 149 (207)
Q Consensus 72 ~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~ 149 (207)
+|.|.|.+.|.+|+.+++.+.|.|...|.+... |.......|+-+.|.|.+.|.|.| .|.|.|+|+...... .+.+
T Consensus 586 ~grYQCVvtN~FGStysqk~KltV~~~PsFtkt-P~dltl~tg~mArl~CaAtG~P~P-eIawqkdggtdFPAA~eRRl~ 663 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT-PEDLTLRTGQMARLECAATGHPRP-EIAWQKDGGTDFPAARERRLH 663 (873)
T ss_pred CceEEEEEecccCcchhheeEEEeeccCccccC-cccceeecccceeeeeeccCCCCc-ceeehhcCCCCCchhhhheee
Confidence 999999999999999999999999999988754 455567899999999999999998 999999887643322 2334
Q ss_pred EeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecccCCCCCCc
Q psy10918 150 ILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQ 203 (207)
Q Consensus 150 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~~~~~p~~~ 203 (207)
+..+.. .+.|.+++.+|+|.|+|.|.|..|..+..+++.|...+.+..|...
T Consensus 664 Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~ 715 (873)
T KOG4194|consen 664 VMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLED 715 (873)
T ss_pred ecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccc
Confidence 444444 4778899999999999999999999988999998888766666543
No 4
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.91 E-value=1.1e-22 Score=137.51 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=111.0
Q ss_pred eeecCCCcccCCCcEEEEeEeccCC----------CCcEEEEEECCccc--ccc-cc--------CCeEecCCeEEEEec
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVP----------PVYKVEWRHNNKTL--HHN-IA--------QGIIMTNQSLVLQRV 67 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~----------~~~~i~W~~~~~~~--~~~-~~--------~~~~~~~~~l~i~~~ 67 (207)
+..+....+.+|+++.|.|.+.+.+ ..+++.|+|++... ... .. ......+..|.|.++
T Consensus 26 ~~~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v 105 (227)
T PHA02826 26 GGDLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNV 105 (227)
T ss_pred CcCcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCC
Confidence 3445667788999999999986633 12389999987542 110 10 011122568999999
Q ss_pred CCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccC-----CCCceEEEEEcCceee
Q psy10918 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN-----PPDVKFSWTFNNSAET 142 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~ 142 (207)
+.+|+|.|.|.+.|..+.. ...+.|.|..++ ....+..|+.+.|.|.+.+. |.| ++.|++++..+.
T Consensus 106 ~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I~WyKng~~l~ 176 (227)
T PHA02826 106 INIDEGIYICTISSGNICE-ESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDY-TLTWYKNGNIVL 176 (227)
T ss_pred ChHHCEEEEEEEEECCcce-EEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCc-eEEEEECCEECC
Confidence 9999999999999976554 445666664221 12245689999999998643 345 999999998754
Q ss_pred eccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 143 VNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.. ....+. .....|.|.+++.+|+|.|+|.|+...
T Consensus 177 ~~-~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 177 YT-DRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CC-CCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 22 222222 223469999999999999999999865
No 5
>KOG4221|consensus
Probab=99.90 E-value=4.5e-22 Score=155.20 Aligned_cols=182 Identities=19% Similarity=0.314 Sum_probs=141.7
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.|...+.+..+..|+++.|.|.+.+.+.+ .+.|.+|..++.... +.+..-++.|.|..++..|.|.|+|.+.++....
T Consensus 142 ~f~~~~~~~t~~~g~ta~f~c~vn~e~~p-~i~w~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r 219 (1381)
T KOG4221|consen 142 DFALQPESTTLLYGQTALFSCEVNAEPVP-TIMWLKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQR 219 (1381)
T ss_pred ccccCccceeEecCCcEEEEEEEcCccCc-eeEEecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCC
Confidence 34444567788999999999999887776 899999999877654 5556668899999999999999999999877666
Q ss_pred ccceEEEEEEeCCccc-----CCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEE
Q psy10918 87 ESNAFFLNVMYSPTCK-----PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAY 161 (207)
Q Consensus 87 ~~~~~~l~v~~~~~~~-----~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i 161 (207)
.+....|+|...+... ...+....+..|+.+.|.|.+.+.|.| .|.|.+|+..+..+. .++...+. +.|.|
T Consensus 220 ~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p-~v~Wlrng~~i~~ds--~rivl~g~-~slli 295 (1381)
T KOG4221|consen 220 TSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKP-SVKWLRNGEKISVDS--YRIVLVGG-SSLLI 295 (1381)
T ss_pred ccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCC-ceEEeeCCeeeeecc--eEEEEecc-cceEE
Confidence 6777788888443211 223444567799999999999999998 999999998877655 33333322 34889
Q ss_pred ecCCCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 162 SPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
.+++..|+|.|+|.|+|......+++++.|+..
T Consensus 296 S~a~~~dSg~YtC~Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 296 SNATDDDSGKYTCRATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred eccccccCceEEEEecCCCcccccceEEEEEcC
Confidence 999999999999999996666666777777654
No 6
>KOG4221|consensus
Probab=99.89 E-value=1.3e-22 Score=158.06 Aligned_cols=181 Identities=18% Similarity=0.323 Sum_probs=141.7
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+.|...+...++.+|+++.|.|.+.+.+.+ .+.|.+|+..+.-+.........+.|.|.+++.+|+|.|+|.+.|...
T Consensus 237 ~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p-~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D 315 (1381)
T KOG4221|consen 237 KLVFLDEPSNAVVVEGDDVVLECVVSGVPKP-SVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTND 315 (1381)
T ss_pred ceeeecCCCccccccCCcEEEEEEecCCCCC-ceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCc
Confidence 3446667788899999999999999999998 999999999887654333334467899999999999999999998655
Q ss_pred CCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecC
Q psy10918 85 DGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 164 (207)
.. .....|+|+.+|.+.... ......++..+.|.|.+.+.|.+ .+.|+|||..+.. .+..++...+. |.|..+
T Consensus 316 ~i-dasaev~V~a~P~~~~~p-~~l~A~e~~die~ec~~~g~p~p-~v~w~kNgd~~ip-sdy~ki~~~~~---lrIlgi 388 (1381)
T KOG4221|consen 316 SI-DASAEVTVLAPPGFTKAP-TTLVAHESMDIEFECPVSGKPIP-TVRWYKNGDRIIP-SDYFKIVGGGN---LRILGI 388 (1381)
T ss_pred cc-ccceEEEEEcCCCCCCCC-cceeeeeccceeEeCCCCCCCcc-eEEEEecCcccCc-ccceEecCCCC---cEEEEE
Confidence 44 446678999888776543 33445679999999999999887 9999999887543 33344444443 666677
Q ss_pred CCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 165 SELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 165 ~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
-..|.|.|.|.+.|..|.....+.+.+..
T Consensus 389 ~~sdeg~yQcvaen~~G~a~a~a~l~vv~ 417 (1381)
T KOG4221|consen 389 VKSDEGFYQCVAENDAGSAQAAAQLEVVP 417 (1381)
T ss_pred ecccchhhhhhhccCcccccchhhheecc
Confidence 78899999999999999888777775554
No 7
>KOG4194|consensus
Probab=99.89 E-value=4e-22 Score=146.37 Aligned_cols=181 Identities=17% Similarity=0.333 Sum_probs=139.4
Q ss_pred eeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcc-ccccccCC--eEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT-LHHNIAQG--IIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~-~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+|..++.+.++..|+...|.|.+.|.|.| +|.|.|+|.. ++....++ .......+.|.+++.+|.|.|+|.+.|..
T Consensus 614 sFtktP~dltl~tg~mArl~CaAtG~P~P-eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~A 692 (873)
T KOG4194|consen 614 SFTKTPEDLTLRTGQMARLECAATGHPRP-EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVA 692 (873)
T ss_pred ccccCcccceeecccceeeeeeccCCCCc-ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccc
Confidence 45567788889999999999999999998 9999998876 55433222 23345679999999999999999999999
Q ss_pred CCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 84 GDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 84 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
|.. +....|.|...|.+... .....+..|+.+.|.|.+.+.|+.+++.|+|+++++..... +...++ .-.|.+.+
T Consensus 693 G~i-sanAtL~V~e~p~f~~P-L~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r--h~f~d~-dQllvv~~ 767 (873)
T KOG4194|consen 693 GQI-SANATLTVLETPSFSIP-LEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER--HTFPDG-DQLLVVKE 767 (873)
T ss_pred cce-eeceEEEEecCCccccc-ccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec--ccCCCC-CeEEEEEe
Confidence 987 55778999988876543 34456789999999999999998459999999888654321 111222 23577788
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
...+|+|.|+|.++|..|.......+.++.
T Consensus 768 ~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 768 NLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred hhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 889999999999999998765555554443
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.87 E-value=2.6e-20 Score=133.51 Aligned_cols=165 Identities=20% Similarity=0.240 Sum_probs=109.8
Q ss_pred CCcccCCCcEEEEeEe-----ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc-
Q psy10918 14 PDHIKEDSDVYFDCDI-----VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE- 87 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~-----~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~- 87 (207)
+..+.+|..+.|.|.. .+.+.+ .++|+++.. +.. .......++.|.|.+++.+|.|.|+|.+.|..+...
T Consensus 130 ~~~~~~g~~~~i~C~~~~~~~~~~~~~-~i~W~k~~~-~~~--~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 130 PQIVNERSTGEMVCPNINAFIASNVNA-DIIWSGHRR-LRN--KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred cceecccCcEEEECCChhhcccCCCCc-eEEEccCCc-cCC--cceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence 3456789999999972 345555 999988643 221 122223357899999999999999999998776542
Q ss_pred --cceEEEEEEeCCccc-CCCCceeeeeeCCcEEEEEEeccCCCC--ceEEEEEcCceeeeccc--eeEEee-------c
Q psy10918 88 --SNAFFLNVMYSPTCK-PHQQRVLGVARQEKVNISCEVDANPPD--VKFSWTFNNSAETVNVA--QAHILR-------S 153 (207)
Q Consensus 88 --~~~~~l~v~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~--~~~~~~-------~ 153 (207)
...+.|.|..+...+ ...+....+..|+.+.|.|.+.+.|++ +.+.|++||..+..... ..++.. .
T Consensus 206 ~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~ 285 (326)
T PHA02785 206 NVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTD 285 (326)
T ss_pred eEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccc
Confidence 223345554211111 112344456679999999999998763 38999999876532111 111111 0
Q ss_pred C---ceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 154 G---TLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 154 ~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 286 ~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 286 KRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred cceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 1 1346999999999999999999998743
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.86 E-value=4e-20 Score=132.52 Aligned_cols=161 Identities=12% Similarity=0.135 Sum_probs=108.2
Q ss_pred cCCCcccCCCcEEEEeEe-----ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDI-----VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-----~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.....+.+|+.+.|.|.+ .+.+.+ ++.|+|++..... ......+..|.|.++..+|+|.|+|.+.|..+..
T Consensus 33 ~~~~~~~~ge~~~l~C~~~~~~~~g~p~~-~i~W~K~g~~~~~---~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 33 FASFMELENEPVILPCPQINTLSSGYNIL-DILWEKRGADNDR---IIPIDNGSNMLILNPTQSDSGIYICITKNETYCD 108 (326)
T ss_pred cchhhhhcCCCEEEECCCccccccCCCCc-eEEEEECCCccce---EEEccCCceEEEcccCcccCeEEEEEEECCCcce
Confidence 344456789999999997 567766 9999999753221 1112223458899999999999999999887655
Q ss_pred ccceEEEEEEeCCc-ccCCCCceeeeeeCCcEEEEEEe-----ccCCCCceEEEEEcCceeeeccceeEEeecCceEEEE
Q psy10918 87 ESNAFFLNVMYSPT-CKPHQQRVLGVARQEKVNISCEV-----DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVA 160 (207)
Q Consensus 87 ~~~~~~l~v~~~~~-~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (207)
...+.|.|..... ..........+.+|..+.+.|.. .+.+++ .+.|+++.. + ... ++... ....|.
T Consensus 109 -~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~-~i~W~k~~~-~--~~~--r~~~~-~~~~L~ 180 (326)
T PHA02785 109 -MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNA-DIIWSGHRR-L--RNK--RLKQR-TPGIIT 180 (326)
T ss_pred -EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCc-eEEEccCCc-c--CCc--ceEec-CCCeEE
Confidence 3456677764332 11111122235688899999962 345665 999987542 1 111 12111 123699
Q ss_pred EecCCCCCCeEEEEEEecCCCCCc
Q psy10918 161 YSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 161 i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
|.+++.+|.|.|+|.|.|..|...
T Consensus 181 i~~v~~~d~G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 181 IEDVRKNDAGYYTCVLKYIYGDKT 204 (326)
T ss_pred EeecChhhCeEEEEEEEeccCCEE
Confidence 999999999999999999887653
No 10
>KOG4222|consensus
Probab=99.81 E-value=2.6e-19 Score=139.37 Aligned_cols=180 Identities=19% Similarity=0.333 Sum_probs=143.0
Q ss_pred eeecCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCcccccccc-CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIA-QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...+....+..|+.++|.|.- .+.+.+ .+.|.|+|+++...+. ......++.|.|.+++..|+|.|.|.+.|..|..
T Consensus 135 rv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~R 213 (1281)
T KOG4222|consen 135 RVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGER 213 (1281)
T ss_pred ccCcccccccccceeEEeccCCCCCCCC-cceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccccc
Confidence 334445666779999999986 456666 8999999999874322 2334677899999999999999999999999998
Q ss_pred ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC
Q psy10918 87 ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166 (207)
Q Consensus 87 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 166 (207)
.+....|.|+.+|.+.. .+....+..|..+.+.|.+.|.|.| ++.|.+++..+. ..+..+..+ ...|.|.++..
T Consensus 214 eS~~A~lsv~e~P~f~~-rp~~~~v~~g~~~~f~c~v~GdP~P-~Vrwkk~~~~~P--~~ry~i~~d--~qtl~i~r~tp 287 (1281)
T KOG4222|consen 214 ESIPARLSVQEKPWFWK-RPKDLAVLVGAAAEFDCRVGGDPQP-TVRWKKDDPSLP--RSRYSILDD--TQTLRIDRVTP 287 (1281)
T ss_pred ccccceeeeccCCcccc-ccccceeecccccccccccCCCCCC-ceeeeccCCCCC--ccceeeeec--cccccccccCC
Confidence 88888999999887664 4556667889999999999999998 999999776543 233333333 23488999999
Q ss_pred CCCeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 167 LDYGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
.|.|.|.|.+.|..|..+.++.++|....
T Consensus 288 ~deg~y~C~a~n~vG~l~asa~ltV~apP 316 (1281)
T KOG4222|consen 288 TDEGTYVCPAENLVGGLEASATLTVQAPP 316 (1281)
T ss_pred CcccceeeeccccccccccccceEEecCc
Confidence 99999999999999999888888777543
No 11
>KOG4222|consensus
Probab=99.81 E-value=1.2e-18 Score=135.77 Aligned_cols=180 Identities=20% Similarity=0.310 Sum_probs=130.4
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecCCeEEEEecC-----CCCCeeeEEEEeeeCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTNQSLVLQRVN-----RQSAGNYTCVGFNIEG 84 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~-----~~d~g~Y~C~~~~~~~ 84 (207)
+.+..+.-|+.++|.|.+.+.|.+ +|+|||+|......+ ..++.+..++|.+..+. ..|.|.|+|.+.|..|
T Consensus 38 p~d~vvs~~~patlnc~asG~ppP-ti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g 116 (1281)
T KOG4222|consen 38 PHDLVVSKGEPATLNCKASGDPPP-TIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLG 116 (1281)
T ss_pred chhhhccCCCCceeecCCCCCCCC-ceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccc
Confidence 345566778899999999999888 999999996554432 23455556666555442 2389999999999999
Q ss_pred CCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeecCceEEEEEec
Q psy10918 85 DGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSP 163 (207)
Q Consensus 85 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 163 (207)
...++...|.+..-..-....+....+..|+.++|.|.-.. .|.+ .+.|.|+|+.+............++ .|.|.+
T Consensus 117 ~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kdg~pl~~~~~~~~~lisgG--~LlIsn 193 (1281)
T KOG4222|consen 117 EAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKDGKPLDHYDVPIIALISGG--NLLISN 193 (1281)
T ss_pred eeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCC-cceeecCCCccccccceeEEEecCC--cEEEec
Confidence 88777777776654544444555556678999999997764 4666 9999999998764333333333333 288999
Q ss_pred CCCCCCeEEEEEEecCCCCCc-cceEEEEeecc
Q psy10918 164 NSELDYGTLICWGSNKIGHQR-VPCVFHIVSAV 195 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~-~~~~~~v~~~~ 195 (207)
++..|.|.|.|.+.|..|... ..+.+.|.+..
T Consensus 194 vrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P 226 (1281)
T KOG4222|consen 194 VRKSDEGTYACVATNMVGERESIPARLSVQEKP 226 (1281)
T ss_pred cccCCCceeeeeecccccccccccceeeeccCC
Confidence 999999999999999999664 34566666543
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.78 E-value=1.1e-17 Score=99.11 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=72.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.|.|++ .+.|++++..+.. ..+..+......+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~l~~-~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~ 85 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQIQE-GEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ 85 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCC-ceEEEECCEEecC-CCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence 34557899999999999999987 9999999987642 223445444556789999999999999999999999998665
Q ss_pred eEEEEeecccCCCC
Q psy10918 187 CVFHIVSAVTFHPP 200 (207)
Q Consensus 187 ~~~~v~~~~~~~~p 200 (207)
+.|.+.++|+||
T Consensus 86 --~~l~V~~~P~pP 97 (98)
T cd05762 86 --VNLTVVDKPDPP 97 (98)
T ss_pred --EEEEEecCCCCC
Confidence 555566778887
No 13
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.73 E-value=1.2e-16 Score=92.87 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=63.5
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee--c--CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR--S--GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~--~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
|+.+.|.|.+.|.|++ .+.|++++..+.....+..+.. . ...+.|.|.++..+|+|.|+|.|.|..|..... +
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~--~ 77 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI--I 77 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE--E
Confidence 6789999999999876 9999999876543222222221 1 223679999999999999999999999988655 5
Q ss_pred EEeecccCCCC
Q psy10918 190 HIVSAVTFHPP 200 (207)
Q Consensus 190 ~v~~~~~~~~p 200 (207)
.+.+..+|.+|
T Consensus 78 ~L~V~~~P~~P 88 (88)
T cd05735 78 QLTVQEPPDPP 88 (88)
T ss_pred EEEEeCCCCCC
Confidence 55666788876
No 14
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.73 E-value=4.4e-17 Score=95.14 Aligned_cols=85 Identities=21% Similarity=0.366 Sum_probs=68.9
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
..+....+.+.+|++++|.|.+.+. .+ .+.|++++..+.... ......+.+|.|.+++.+|+|.|.|.+.|..|...
T Consensus 6 ~~~~~~~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 6 SNNSVGNQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMT 82 (91)
T ss_pred cccccCccccccCCcEEEEEEeCCC-CC-EEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEE
Confidence 3455566789999999999999998 66 999999998876422 22223456899999999999999999999999887
Q ss_pred cceEEEEE
Q psy10918 88 SNAFFLNV 95 (207)
Q Consensus 88 ~~~~~l~v 95 (207)
+..+.|.|
T Consensus 83 S~~~~L~V 90 (91)
T cd05740 83 SDPYILNV 90 (91)
T ss_pred eeeEEEEe
Confidence 77777766
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.73 E-value=4.2e-17 Score=96.64 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=73.5
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
|...+....+..|+.+.|.|.+.|.|.+ .+.|+|++.++......... ...+.|.|.++...|+|.|+|.+.|..|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~ 81 (98)
T cd05762 3 IIQFPEDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS 81 (98)
T ss_pred eEECCcCEEEECCCEEEEEEEEcccCCC-ceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc
Confidence 3445677889999999999999999887 99999999998754322222 12457999999999999999999999998
Q ss_pred CccceEEEEEEeCCc
Q psy10918 86 GESNAFFLNVMYSPT 100 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~ 100 (207)
. ...+.|.|...|.
T Consensus 82 ~-~~~~~l~V~~~P~ 95 (98)
T cd05762 82 R-QAQVNLTVVDKPD 95 (98)
T ss_pred e-eEEEEEEEecCCC
Confidence 7 4478889887664
No 16
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.73 E-value=6.8e-17 Score=93.96 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=66.1
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+.+..+.+|+++.|.|.+.|.|.| .++|++++..+... ......+..|.|.+++.+|+|.|.|.+.|..|.. ...
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~ 82 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVP-VIRWRKILEPMPAT--AEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD-KHQ 82 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCC-EEEEEECCcCCCCC--CEEecCCCEEEECcCChhhCEEEEEEEEcCCCce-EEE
Confidence 3566778899999999999999988 99999999877543 2333456789999999999999999999999976 445
Q ss_pred EEEEE
Q psy10918 91 FFLNV 95 (207)
Q Consensus 91 ~~l~v 95 (207)
+.|.|
T Consensus 83 ~~l~V 87 (88)
T cd05851 83 ARVYV 87 (88)
T ss_pred EEEEE
Confidence 55655
No 17
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.72 E-value=1.4e-16 Score=92.13 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=64.3
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+..|+.+.|.|.+.|.|.| .+.|++++..+.....+..+......+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAP-TVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCC-eEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 356789999999999999998 9999999887643323344444455678999999999999999999999998765544
Q ss_pred E
Q psy10918 189 F 189 (207)
Q Consensus 189 ~ 189 (207)
+
T Consensus 84 l 84 (86)
T cd05894 84 V 84 (86)
T ss_pred E
Confidence 4
No 18
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.70 E-value=1.3e-16 Score=89.54 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=57.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC-ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG-TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|.| .+.|++++..+.....+..+..++ ....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 4799999999998 999999988765433344443332 334799999999999999999999999887766654
No 19
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.70 E-value=1.3e-16 Score=94.62 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=64.8
Q ss_pred CCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEec-------CCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMT-------NQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
....+.+|+++.|.|.+.+ .|.| .+.|+|||.++........... ..+|.|..+..+|+|.|+|.+.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPP-HINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCC-ccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 4567888999999999999 6766 9999999999875332222222 35799999999999999999999998
Q ss_pred CCccceEEEEEE
Q psy10918 85 DGESNAFFLNVM 96 (207)
Q Consensus 85 ~~~~~~~~l~v~ 96 (207)
.. ...+.|.|.
T Consensus 90 ~~-~~t~~L~V~ 100 (101)
T cd04975 90 SK-SLTFELYVN 100 (101)
T ss_pred cE-EEEEEEEEE
Confidence 65 556666664
No 20
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.70 E-value=3.9e-16 Score=91.71 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=62.6
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec-CceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-GTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+... ....+... +....|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~l~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQALALS-DHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEECccC-CCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 34567899999999999999987 99999998765432 22233222 34567999999999999999999999998865
Q ss_pred ceEE
Q psy10918 186 PCVF 189 (207)
Q Consensus 186 ~~~~ 189 (207)
.+.+
T Consensus 87 ~~~v 90 (92)
T cd05737 87 DVTV 90 (92)
T ss_pred EEEE
Confidence 5443
No 21
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.70 E-value=1.8e-16 Score=89.25 Aligned_cols=73 Identities=23% Similarity=0.477 Sum_probs=59.6
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
+|+++.|.|.+.+.|.| .+.|++++..+.... ......+++|.|.+++..|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQLSVDR-RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEECCCCC-CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEe
Confidence 58999999999999988 999999998876532 2233456789999999999999999999999876 3355554
No 22
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.69 E-value=4.7e-16 Score=90.46 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=65.4
Q ss_pred cCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 12 LNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
+....+.+|+++.|.|.+ .+.|.+ .+.|++++..+...........++.|.|.+++.+|+|.|.|.+.|..|...+..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 455677899999999998 677777 999999998877543333333457899999999999999999999998876666
Q ss_pred EEEE
Q psy10918 91 FFLN 94 (207)
Q Consensus 91 ~~l~ 94 (207)
+.|.
T Consensus 82 ~~l~ 85 (86)
T cd05724 82 ARLS 85 (86)
T ss_pred EEEE
Confidence 6554
No 23
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.68 E-value=9.7e-16 Score=90.20 Aligned_cols=86 Identities=17% Similarity=0.304 Sum_probs=62.4
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEe-c---CCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIM-T---NQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~-~---~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
..+....+..|++++|.|.+.+.|.+..+.|++ ++..+.......... . .++|.|.+++.+|+|.|+|.+.|..+
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 345666788999999999999988533999998 776655422221111 1 25799999999999999999999874
Q ss_pred CCccceEEEEE
Q psy10918 85 DGESNAFFLNV 95 (207)
Q Consensus 85 ~~~~~~~~l~v 95 (207)
.....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 33355666654
No 24
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.68 E-value=8.2e-16 Score=91.24 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=61.6
Q ss_pred eeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeec-----CceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRS-----GTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...+..|+.+.|.|.+.| .|+| .+.|+|+|..+..... ..+... ...+.|.|..+..+|+|.|+|.|.|..|
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~~i~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPP-HINWTYDNRTLTNKLT-EIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCC-ccEEEeCCeeCCCCcc-eeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 445778999999999999 6665 9999999987653221 111111 1246799999999999999999999999
Q ss_pred CCccceEEEE
Q psy10918 182 HQRVPCVFHI 191 (207)
Q Consensus 182 ~~~~~~~~~v 191 (207)
..+..+.+.|
T Consensus 90 ~~~~t~~L~V 99 (101)
T cd04975 90 SKSLTFELYV 99 (101)
T ss_pred cEEEEEEEEE
Confidence 8766655544
No 25
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.68 E-value=2.5e-16 Score=85.97 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=54.9
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.|.|.+.|.|+| .+.|+|+|..+.. ......|.|.++..+|+|.|+|.|+|..|..+++..+.|.
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~---------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISG---------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECcc---------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4789999999998 9999999987531 1233469999999999999999999999988777777665
No 26
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.67 E-value=4.3e-16 Score=90.12 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=67.0
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
...+.+..+..|+++.|.|.+.+.|.+ .+.|++++..+.... .....++.|.|.+++.+|+|.|.|.+.|..|.. .
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~ 78 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRP-AYRWLKNGQPLASEN--RIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-Y 78 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEECCCCC--eEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-E
Confidence 345677888999999999999999988 999999999876532 344557789999999999999999999998875 3
Q ss_pred ceEEEE
Q psy10918 89 NAFFLN 94 (207)
Q Consensus 89 ~~~~l~ 94 (207)
..+.|.
T Consensus 79 ~~~~l~ 84 (85)
T cd05728 79 ASAELA 84 (85)
T ss_pred EEEEEE
Confidence 344444
No 27
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.67 E-value=3.9e-16 Score=87.67 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=57.0
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC-ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG-TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|.| .+.|++++..+.....+..+...+ ....|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 4799999999998 999999988764333333343332 334699999999999999999999999887776654
No 28
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.67 E-value=3.8e-15 Score=94.34 Aligned_cols=119 Identities=23% Similarity=0.304 Sum_probs=81.7
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCc
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNS 139 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~ 139 (207)
+|.|.+++..|+|.|.|.+.+..+.. ...+.|.|..+|.+..... ......|..+.|.|.+.+.++ ++.+.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~-~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLE-KLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCC-CceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 58999999999999999998776664 5677899988776543322 222336888999999999744 36999999875
Q ss_pred eeee------cc--ceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 140 AETV------NV--AQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 140 ~~~~------~~--~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.... .. .......++. .+.|.+......+.+.|+|.+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 4211 00 0111222333 34566665555667899999988654
No 29
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.67 E-value=6.3e-16 Score=87.51 Aligned_cols=74 Identities=18% Similarity=0.363 Sum_probs=59.9
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccc-cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI-AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
|+++.|.|.+.+.|.| .++|++++.++.... .......++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence 6889999999999988 999999998876532 22344556789999999999999999999998876 33555654
No 30
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.67 E-value=5.5e-16 Score=91.78 Aligned_cols=85 Identities=16% Similarity=0.341 Sum_probs=67.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCC-eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
.......+..|+++.|.|.+.|.|.+ .+.|++++..+....... ....+..|.|.+++.+|+|.|+|.+.|..|.. .
T Consensus 8 ~~~~~~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~ 85 (95)
T cd05730 8 QSEVNATANLGQSVTLACDADGFPEP-TMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-E 85 (95)
T ss_pred CcccceEEeCCCCEEEEEeccEeCCC-EEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-E
Confidence 44455667899999999999999988 999999998876542221 22234579999999999999999999999976 5
Q ss_pred ceEEEEEE
Q psy10918 89 NAFFLNVM 96 (207)
Q Consensus 89 ~~~~l~v~ 96 (207)
..+.|.|.
T Consensus 86 ~~~~L~V~ 93 (95)
T cd05730 86 AEIHLKVF 93 (95)
T ss_pred EEEEEEEE
Confidence 56777765
No 31
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.66 E-value=1.6e-15 Score=89.33 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=60.1
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEE-cCceeeeccceeEEee-cCceEEEEEecCCCCCCeEEEEEEecCC-CCCccc
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTF-NNSAETVNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSNKI-GHQRVP 186 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~-g~~~~~ 186 (207)
.+..|+.+.|.|.+.|.|.++.+.|++ ++..+.....+..+.. ++..+.|.|.+++.+|+|.|+|.|.|.. |....+
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 467899999999999998534999998 6654432222222222 2335679999999999999999999997 776666
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 91 ~~l~v 95 (96)
T cd05865 91 VNVKI 95 (96)
T ss_pred EEEEE
Confidence 55544
No 32
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=8.1e-16 Score=90.37 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=61.7
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec---CCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
....+.+|+++.|.|.+.+.|.| .+.|++++.++........... ..+|.|.+++.+|+|.|.|.+.|..|.. ..
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 86 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TV 86 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eE
Confidence 34567899999999999999988 9999999988865433233222 2369999999999999999999998876 33
Q ss_pred eEEE
Q psy10918 90 AFFL 93 (207)
Q Consensus 90 ~~~l 93 (207)
.+.|
T Consensus 87 ~~~v 90 (92)
T cd05737 87 DVTV 90 (92)
T ss_pred EEEE
Confidence 4443
No 33
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=8.3e-16 Score=85.92 Aligned_cols=72 Identities=26% Similarity=0.458 Sum_probs=56.6
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.|.|.| .+.|++++..+. ...+..+..++ .|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~~l~-~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTELLV-NNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCEecc-cCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 5789999999999987 999999886542 22233333322 499999999999999999999999987776654
No 34
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.65 E-value=1.4e-15 Score=85.98 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=58.1
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|+.+.|.|.+.|.|.| .+.|+++|..+...........++. .|.|.+++..|+|.|+|.|.|..|....++.+.|
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6789999999999998 9999999877542211111222332 5788999999999999999999999887777765
No 35
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.65 E-value=2.7e-15 Score=88.33 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=62.8
Q ss_pred ecCCCcccCC---CcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecC-CCCCeeeEEEEeeeCCCC
Q psy10918 11 SLNPDHIKED---SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN-RQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 11 ~~~~~~v~~g---~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~ 86 (207)
.+....+.+| +++.|.|.+.+.|.+ .++|++++..+...........++.|.|.++. ..|+|.|.|.+.|..|..
T Consensus 7 ~P~~~~~~~~~~g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05850 7 QPSSLLFPEGSPEEKVTLGCRARASPPA-TYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTV 85 (94)
T ss_pred CCCCEEecCCCCCCeEEEEeEceeCCCC-EEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence 3455444444 579999999999988 99999999988643333444556789998865 599999999999999987
Q ss_pred ccceEEE
Q psy10918 87 ESNAFFL 93 (207)
Q Consensus 87 ~~~~~~l 93 (207)
.+..+.|
T Consensus 86 ~s~~a~l 92 (94)
T cd05850 86 VSREANL 92 (94)
T ss_pred EEEEEEE
Confidence 6655544
No 36
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=9.6e-16 Score=85.67 Aligned_cols=72 Identities=26% Similarity=0.441 Sum_probs=58.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
|+++.|.|.+.+.|.+ .+.|+|++..+.... ......+++|.|.+++.+|+|.|.|.+.|..|...+ ...|.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~~l~~~~-r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTELLVNNS-RISIWDDGSLEILNITKLDEGSYTCFAENNRGKANS-TGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCEecccCC-CEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeE-EEEEE
Confidence 6789999999999988 999999998765432 233345678999999999999999999999987733 44454
No 37
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.65 E-value=2.3e-15 Score=87.48 Aligned_cols=79 Identities=18% Similarity=0.411 Sum_probs=62.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec-------CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-------NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
|+.+.|.|.+.+.|++ .+.|++++..+........... .++|.|.++...|+|.|+|.+.|..|.. ...+.
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEE
Confidence 7889999999999877 9999999987754322211111 1469999999999999999999999987 55778
Q ss_pred EEEEeCCc
Q psy10918 93 LNVMYSPT 100 (207)
Q Consensus 93 l~v~~~~~ 100 (207)
|.|..+|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 88887664
No 38
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.65 E-value=1.5e-15 Score=90.24 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=63.6
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeE--------ecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--------MTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
...+..|+.+.|.|.+.++|.| .+.|+|++.++......... ....+|.|.+++.+|+|.|+|.+.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP-QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC-ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 4566778999999999999998 99999999998754322111 11357999999999999999999999886
Q ss_pred CccceEEEEEE
Q psy10918 86 GESNAFFLNVM 96 (207)
Q Consensus 86 ~~~~~~~l~v~ 96 (207)
. +.++.|.|.
T Consensus 91 ~-~~t~~l~V~ 100 (101)
T cd05859 91 K-SYTFALQIQ 100 (101)
T ss_pred E-EEEEEEEEE
Confidence 5 446666654
No 39
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.65 E-value=1.9e-15 Score=85.54 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=57.4
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|+.+.|.|.+.|.|.| .+.|+++|..+............ ...|.|.+++.+|+|.|.|.|.|..|.....+.+.|
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999988 99999998765432211122222 225899999999999999999999998877766655
No 40
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.65 E-value=1.8e-15 Score=85.24 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=56.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec-CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|.| .+.|++++..+.....+..+... .....|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 4799999999998 99999998776533333333333 2344699999999999999999999999887665554
No 41
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=1e-15 Score=86.16 Aligned_cols=73 Identities=25% Similarity=0.383 Sum_probs=57.1
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+|+.+.|.|.+.|.|.| .+.|++++..+.... ....... ..|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~~~~~~-~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQLSVDR-RHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEECCCCC-CeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 47899999999999998 999999987654321 1122222 3599999999999999999999999887665554
No 42
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.64 E-value=2.6e-15 Score=88.33 Aligned_cols=74 Identities=18% Similarity=0.388 Sum_probs=59.3
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecC-CCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN-RQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+|+.+.|.|.+.|.|.+ .++|++++..+...........++.|.|.++. ..|+|.|.|.+.|..|...++.+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVP-TYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCC-EEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 47889999999999988 99999999988643333444456789999875 6999999999999998776655543
No 43
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=2.3e-15 Score=87.50 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=61.3
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+... ..+...+ ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~~~~~---~~~~~~~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 82 (88)
T cd05851 9 KDTYALKGQNVTLECFALGNPVP-VIRWRKILEPMPAT---AEISMSG--AVLKIFNIQPEDEGTYECEAENIKGKDKHQ 82 (88)
T ss_pred ccEEEeCCCcEEEEEEecccCCC-EEEEEECCcCCCCC---CEEecCC--CEEEECcCChhhCEEEEEEEEcCCCceEEE
Confidence 34457799999999999999998 99999988654321 1222222 358999999999999999999999988766
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 83 ~~l~V 87 (88)
T cd05851 83 ARVYV 87 (88)
T ss_pred EEEEE
Confidence 55543
No 44
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.64 E-value=3.7e-15 Score=88.21 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=63.4
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+..|+.+.|.|.+.|.|.| .+.|++++..+..... ........+.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 14 TANLGQSVTLACDADGFPEP-TMTWTKDGEPIESGEE--KYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEeCCCCEEEEEeccEeCCC-EEEEEECCEECcCCCC--EEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 46789999999999999987 9999999876543211 22222233469999999999999999999999988777777
Q ss_pred EEee
Q psy10918 190 HIVS 193 (207)
Q Consensus 190 ~v~~ 193 (207)
.|..
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 6653
No 45
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.64 E-value=2.8e-15 Score=86.95 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=60.0
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+..|+.+.|.|.+.|.|.| .+.|++++..+.................|.|.++..+|+|.|+|.|.|..|....++.+
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 46689999999999999887 99999998775432211111112233458899999999999999999999988766555
Q ss_pred E
Q psy10918 190 H 190 (207)
Q Consensus 190 ~ 190 (207)
.
T Consensus 84 ~ 84 (85)
T cd05857 84 D 84 (85)
T ss_pred E
Confidence 4
No 46
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.64 E-value=1.4e-15 Score=85.89 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=59.4
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCcccccccc-CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA-QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
|+++.|.|.+.+.|.| .+.|++++.++..... ......+..|.|.+++..|+|.|.|.+.|..|.. ...+.|+|
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence 6789999999999988 9999999998864221 1223455689999999999999999999999877 44566665
No 47
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.64 E-value=2e-15 Score=89.69 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee-----cCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-----SGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..+..|+.+.|.|.+.|.|+| .+.|+|+|..+........... ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPP-QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCC-ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 356788999999999999998 9999999987653221111101 1123579999999999999999999999988
Q ss_pred ccceEEEEe
Q psy10918 184 RVPCVFHIV 192 (207)
Q Consensus 184 ~~~~~~~v~ 192 (207)
+.++.+.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 766666553
No 48
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.64 E-value=4.3e-15 Score=87.12 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=61.9
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
+....+.+|+.+.|.|.+.+.|.| .+.|++++..+............+....|.|.+++.+|+|.|+|.|.|.+|....
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 344567899999999999999887 9999999876543221111122333456999999999999999999999998865
Q ss_pred ceEE
Q psy10918 186 PCVF 189 (207)
Q Consensus 186 ~~~~ 189 (207)
++.+
T Consensus 87 ~~~v 90 (92)
T cd05891 87 DVTV 90 (92)
T ss_pred EEEE
Confidence 5443
No 49
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.64 E-value=7e-15 Score=86.04 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=62.1
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
...+..|+.+.|.|.+.|.|.| .+.|++++..+.... ............|.|.++..+|.|.|+|.|.|..|....++
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLIVIQTR-TDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEEccCCc-cEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 3447799999999999999997 999999987643211 11122233456799999999999999999999999886665
Q ss_pred EEE
Q psy10918 188 VFH 190 (207)
Q Consensus 188 ~~~ 190 (207)
.|.
T Consensus 87 ~L~ 89 (90)
T cd04972 87 QVT 89 (90)
T ss_pred EEe
Confidence 554
No 50
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.64 E-value=1.6e-15 Score=87.72 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=61.8
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc-CCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA-QGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
...+.+|+.+.|.|.+.|.|.| .+.|++++.++..... ..... ....|.|.++..+|+|.|.|.+.|..|.. ...
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~ 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAP-TVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HAS 81 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCC-eEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEE
Confidence 3457889999999999999988 9999999998865322 11211 23579999999999999999999999976 445
Q ss_pred EEEE
Q psy10918 91 FFLN 94 (207)
Q Consensus 91 ~~l~ 94 (207)
+.|.
T Consensus 82 ~~l~ 85 (86)
T cd05894 82 LFVK 85 (86)
T ss_pred EEEE
Confidence 5554
No 51
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.63 E-value=1.7e-15 Score=84.94 Aligned_cols=70 Identities=31% Similarity=0.582 Sum_probs=53.9
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccC-CeEecC-C--eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTN-Q--SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~-~--~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
+.|.|.+.|.|.| .+.|+|++..+...... .+...+ + +|.|.+++.+|+|.|.|.+.|..|.... ...|.
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATC-HARLD 74 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEE-EEEEe
Confidence 5799999999998 99999999988743222 222222 2 6999999999999999999999987633 44554
No 52
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.63 E-value=5.1e-15 Score=83.43 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=57.6
Q ss_pred cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
.+.|.|.+.|.|.| .+.|++++..+.. .....+........|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKPLKL-SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEEcCC-CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 36899999999998 9999999887532 2233444445567899999999999999999999999886665443
No 53
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.63 E-value=3.6e-15 Score=86.96 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=64.4
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.+....+.+|+++.|.|.+.+.|.+ .+.|++++..+..... ....+..|.|.+++.+|+|.|.|.+.|..|.. ...
T Consensus 7 ~p~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~ 82 (88)
T cd04968 7 FPKDTYALKGQNVTLECFALGNPVP-QIKWRKVDGSMPSSAE--ISMSGAVLKIPNIQFEDEGTYECEAENIKGKD-THQ 82 (88)
T ss_pred CCCceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCCCccE--EEEeCCEEEECCCCcccCEEEEEEEEECCCcE-EEE
Confidence 3466678899999999999999988 9999998876554221 22456789999999999999999999999876 445
Q ss_pred EEEEE
Q psy10918 91 FFLNV 95 (207)
Q Consensus 91 ~~l~v 95 (207)
..|.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 55654
No 54
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.63 E-value=5.5e-15 Score=86.16 Aligned_cols=84 Identities=17% Similarity=0.392 Sum_probs=63.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEEC-CccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN-NKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
..+.+..+.+|+++.|.|.+.|.|. .+.|+++ +..+....+......+ ..|.|.++..+|+|.|+|.+.|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 3466778899999999999999874 8999984 5555443222222222 279999999999999999999999877
Q ss_pred ccceEEEEE
Q psy10918 87 ESNAFFLNV 95 (207)
Q Consensus 87 ~~~~~~l~v 95 (207)
....+.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 666666654
No 55
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.63 E-value=8.4e-15 Score=87.67 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=63.0
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccc----ccCCeEecCCeEEEEe-----cCCCCCeeeEEEEe
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQR-----VNRQSAGNYTCVGF 80 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~~~~~l~i~~-----~~~~d~g~Y~C~~~ 80 (207)
..+....+.+|+++.|.|.+.+.|.+ .+.|++++..+... ........++.+.+.. ++.+|+|.|+|.+.
T Consensus 6 ~~p~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~ 84 (100)
T cd07693 6 EHPSDLIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAH 84 (100)
T ss_pred ecCceeEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEE
Confidence 44667788999999999999999988 99999999887651 1122223333333222 26899999999999
Q ss_pred eeCCCCccceEEEEE
Q psy10918 81 NIEGDGESNAFFLNV 95 (207)
Q Consensus 81 ~~~~~~~~~~~~l~v 95 (207)
|..|...+..+.|.|
T Consensus 85 N~~G~~~s~~~~l~v 99 (100)
T cd07693 85 NSLGEAVSRNASLEV 99 (100)
T ss_pred ccccceecceEEEEe
Confidence 999986677777665
No 56
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=3e-15 Score=84.59 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=53.8
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
+.|.|.+.|.|.| .+.|++++..........++........|.|.+++.+|+|.|.|.|.|..|..+..+.+.|
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4789999999998 9999998764221111112222222236899999999999999999999998877766655
No 57
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.62 E-value=2.4e-14 Score=86.57 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=59.3
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEe--ecC--ceEEEEEecCC-CCCCeEEEEEEecCCCCCccce
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL--RSG--TLSVVAYSPNS-ELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~--~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
.|..+.|.|.+.|.|++ .+.|++++..+.....+.... ..+ ..+.|.|.++. .+|.|.|+|.|.|..|.....
T Consensus 22 ~g~~v~L~C~a~G~P~p-~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~- 99 (109)
T cd05773 22 GSSDANLVCQAQGVPRV-QFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD- 99 (109)
T ss_pred CCCEEEEEEECcccCCC-EEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE-
Confidence 56789999999999987 999999987654322222111 111 13579999987 589999999999999998555
Q ss_pred EEEEeecccC
Q psy10918 188 VFHIVSAVTF 197 (207)
Q Consensus 188 ~~~v~~~~~~ 197 (207)
+.+.+..+|
T Consensus 100 -i~L~~~~~p 108 (109)
T cd05773 100 -IQLVSTSRP 108 (109)
T ss_pred -EEEEecCCC
Confidence 555555555
No 58
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.62 E-value=6.1e-15 Score=87.22 Aligned_cols=85 Identities=26% Similarity=0.372 Sum_probs=65.7
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEec-----CCCCCeeeEEEEeee-
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRV-----NRQSAGNYTCVGFNI- 82 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~-----~~~d~g~Y~C~~~~~- 82 (207)
..+....+.+|+++.|.|.+.+.|.+ .+.|+|++..+...... .....++++.|.++ +..|.|.|.|.+.|.
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~ 82 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDS 82 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCC-EEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCc
Confidence 34566778899999999999999877 99999999988753321 23344566777776 578999999999999
Q ss_pred CCCCccceEEEEE
Q psy10918 83 EGDGESNAFFLNV 95 (207)
Q Consensus 83 ~~~~~~~~~~l~v 95 (207)
.|...++.+.|.|
T Consensus 83 ~G~~~s~~~~l~v 95 (95)
T cd05722 83 LGSIVSRTARLTV 95 (95)
T ss_pred cCcEEEeeeEEeC
Confidence 8877676666653
No 59
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.62 E-value=4.9e-15 Score=83.73 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=56.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
+....+.+|++++|.|.+.+.+.+..+.|++|+..+.. .+..|.|.++ .+|+|.|+|.+.+. ..+..+
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v 74 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPV 74 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cCCeEEEeec-ccCCEEeEEECCCC---cCCCCE
Confidence 66677899999999999988776547999999987632 3567999999 99999999999864 334455
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|+|
T Consensus 75 ~l~V 78 (78)
T cd05752 75 HLEV 78 (78)
T ss_pred EEeC
Confidence 5543
No 60
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.62 E-value=1.8e-15 Score=84.98 Aligned_cols=70 Identities=29% Similarity=0.462 Sum_probs=53.7
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEe-cC-C--eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-TN-Q--SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~-~--~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
|.|.|.+.|.|.| .+.|+|++.++.......... .+ + .|.|.+++.+|+|.|+|.+.|..|.. +....|.
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLD 74 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEe
Confidence 5799999999998 999999998886532222221 22 1 59999999999999999999999877 3355554
No 61
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.62 E-value=4.5e-15 Score=84.18 Aligned_cols=74 Identities=20% Similarity=0.389 Sum_probs=59.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
|+++.|.|.+.+.|.| .+.|++++..+...... .....+..|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 7889999999999988 99999999887653322 233446789999999999999999999998876 44556655
No 62
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.62 E-value=4.2e-15 Score=86.17 Aligned_cols=78 Identities=26% Similarity=0.443 Sum_probs=60.7
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
.+.+|+.+.|.|.+.+.|.+ .+.|++++..+...... .......+|.|.+++.+|+|.|.|.+.|..|.. ...+.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH 82 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEE
Confidence 46789999999999999887 99999999888653321 112234569999999999999999999999876 44555
Q ss_pred EEE
Q psy10918 93 LNV 95 (207)
Q Consensus 93 l~v 95 (207)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 543
No 63
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.61 E-value=1.6e-14 Score=84.90 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+....+..|+.+.|.|.+.+.|.| .+.|++++..+.. ..+..+......+.|.|.++..+|+|.|.|.|.|..|...
T Consensus 9 ~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 86 (92)
T cd05747 9 KPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIVS-SQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQE 86 (92)
T ss_pred cCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEECCC-CCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEe
Confidence 3445667899999999999999997 9999999876432 2233344444456799999999999999999999999875
Q ss_pred cce
Q psy10918 185 VPC 187 (207)
Q Consensus 185 ~~~ 187 (207)
.+.
T Consensus 87 ~~~ 89 (92)
T cd05747 87 AQF 89 (92)
T ss_pred EEE
Confidence 543
No 64
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.61 E-value=6.4e-15 Score=83.91 Aligned_cols=70 Identities=14% Similarity=0.294 Sum_probs=57.1
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.+..+.+|+.+.|.|.+.+. .+ .+.|+|+|.++.... .....+..|.|.+++.+|+|.|.|.+.|..|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~l~~~~--~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQLGENN--RTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-Cc-eEEEeeCCcCCCCCc--eEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 34567889999999999886 34 899999999887533 334456789999999999999999999887764
No 65
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=5e-15 Score=85.43 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=59.5
Q ss_pred CcEEEEeEeccCCCC-cEEEEEECCccccccc-cCCe-E----ecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 21 SDVYFDCDIVAVPPV-YKVEWRHNNKTLHHNI-AQGI-I----MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~-~~i~W~~~~~~~~~~~-~~~~-~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+++.|.|.+.+.|.+ ..+.|++++.++.... .... . ...++|.|.+++..|+|.|+|.+.|..|.. ...+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEE
Confidence 468999999998876 3689999998875421 1111 1 134689999999999999999999999877 557788
Q ss_pred EEEeCC
Q psy10918 94 NVMYSP 99 (207)
Q Consensus 94 ~v~~~~ 99 (207)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 887654
No 66
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=1.6e-14 Score=85.84 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=60.3
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcC--ceeeec----cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNN--SAETVN----VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...+.+|+.+.|.|.+.|.|.| .+.|+++. ..+... ..+..+........|.|.+++.+|+|.|.|.|.|..|
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 3456789999999999999987 99999953 222110 1122232223345799999999999999999999999
Q ss_pred CCccceEEE
Q psy10918 182 HQRVPCVFH 190 (207)
Q Consensus 182 ~~~~~~~~~ 190 (207)
....++.|.
T Consensus 89 ~~~~~~~l~ 97 (98)
T cd05870 89 GHQKSMYLD 97 (98)
T ss_pred cceeEEEEe
Confidence 887766554
No 67
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.61 E-value=4e-15 Score=87.08 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=62.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe--EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
+++..+.+|+.+.|.|.+.|.|.| .+.|++++..+........ ......|.|.+++.+|.|.|.|.+.|..|.. ..
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~ 84 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-NV 84 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-eE
Confidence 455668899999999999999988 9999999987754322111 1223479999999999999999999999876 33
Q ss_pred eEEEE
Q psy10918 90 AFFLN 94 (207)
Q Consensus 90 ~~~l~ 94 (207)
.+.|.
T Consensus 85 ~~~L~ 89 (90)
T cd04972 85 SVQVT 89 (90)
T ss_pred EEEEe
Confidence 55554
No 68
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=1.4e-14 Score=83.49 Aligned_cols=78 Identities=12% Similarity=0.313 Sum_probs=57.7
Q ss_pred CcEEEEEEeccCCCC-ceEEEEEcCceeeecccee---EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 115 EKVNISCEVDANPPD-VKFSWTFNNSAETVNVAQA---HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 115 ~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.+.|.|.+.|.|.| +.+.|++++..+....... .+........|.|.+++..|+|.|+|.|.|..|..++++.+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 368999999999875 4789999987654322111 122223345799999999999999999999999887776665
Q ss_pred Ee
Q psy10918 191 IV 192 (207)
Q Consensus 191 v~ 192 (207)
|.
T Consensus 81 V~ 82 (85)
T cd05854 81 VR 82 (85)
T ss_pred EE
Confidence 54
No 69
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.61 E-value=4.1e-15 Score=84.35 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=57.7
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|+.+.|.|.+.|.|.| .+.|++++..+......... ......|.|.+++.+|+|.|+|.|.|..|.....+.+.|
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVPIEELPPDPRR--RVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEECCCCCCcceE--EccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6789999999999988 99999998765432211111 122346899999999999999999999998877766655
No 70
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.61 E-value=1.7e-14 Score=85.65 Aligned_cols=80 Identities=16% Similarity=0.348 Sum_probs=59.8
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc----ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV----AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....|+.+.|.|.+.|.|.| .+.|++++..+.... .+..+......+.|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 13 ~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 13 AMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred EEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 34457999999999999987 999999876542211 1122223334467999999999999999999999998876
Q ss_pred ceEEE
Q psy10918 186 PCVFH 190 (207)
Q Consensus 186 ~~~~~ 190 (207)
++.|.
T Consensus 92 ~~~l~ 96 (97)
T cd05869 92 SMYLE 96 (97)
T ss_pred EEEEE
Confidence 65544
No 71
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.61 E-value=5.3e-15 Score=84.12 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=60.5
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
..+.+..+.+|+++.|.|.+.|.|.|..|.|++++.++... .....+.|.|..+ .|+|.|.|.+.|..|...++
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 34667788999999999999999987469999999887541 1123457888876 57899999999999977655
Q ss_pred eEEE
Q psy10918 90 AFFL 93 (207)
Q Consensus 90 ~~~l 93 (207)
...|
T Consensus 77 ~a~~ 80 (81)
T cd05749 77 TGTV 80 (81)
T ss_pred eEEe
Confidence 5443
No 72
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=7.7e-15 Score=85.56 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=60.3
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.+|+.+.|.|.+.|.|.| .+.|++++....... ... .....|.|.+++.+|+|.|.|.|.|..|....+
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~---~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVP-QIKWRKVDGSMPSSA---EIS--MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCCCcc---EEE--EeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 33456789999999999999987 999999876532211 111 122369999999999999999999999988666
Q ss_pred eEEEE
Q psy10918 187 CVFHI 191 (207)
Q Consensus 187 ~~~~v 191 (207)
+.+.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 55544
No 73
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.61 E-value=3.4e-15 Score=81.50 Aligned_cols=65 Identities=26% Similarity=0.437 Sum_probs=53.4
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.+.|.| .+.|+|||.++... ..+..|.|.++..+|+|.|+|.+.|..|.. .+.+.+++
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence 4799999999998 99999999988632 235689999999999999999999998865 44555554
No 74
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.60 E-value=1.7e-14 Score=85.56 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=61.3
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc----ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV----AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
..+.+|+.+.|.|.+.+.|.| .+.|++++..+.... .+..+......+.|.|.+++.+|+|.|.|.|.|..|..+
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 456789999999999999887 999999875432111 112222333456799999999999999999999999887
Q ss_pred cceEEE
Q psy10918 185 VPCVFH 190 (207)
Q Consensus 185 ~~~~~~ 190 (207)
.++.+.
T Consensus 90 ~s~~l~ 95 (96)
T cd05732 90 QSMYLE 95 (96)
T ss_pred EEEEEe
Confidence 665554
No 75
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.60 E-value=1.4e-14 Score=82.14 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=54.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
++|.|.+.|.|.| .+.|+++|..+........+. .....|.|.++..+|+|.|.|.|.|..|....+..+.|.+
T Consensus 1 v~L~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRP-TYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCC-cEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 4799999999987 999999987653322222222 2223689999999999999999999999775555555543
No 76
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.60 E-value=1.5e-14 Score=84.64 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=59.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeec-----cceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVN-----VAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
|+.+.|.|.+.+.|.| .+.|++++...... ....++.... ...|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-TGDLTITNVQRSDVGYYICQTLNVAGSILTKAY 78 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECC-CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence 6789999999999987 99999987643110 0111222211 125999999999999999999999999877777
Q ss_pred EEEeeccc
Q psy10918 189 FHIVSAVT 196 (207)
Q Consensus 189 ~~v~~~~~ 196 (207)
|.|.....
T Consensus 79 l~V~~~~~ 86 (90)
T cd05726 79 LEVTDVIA 86 (90)
T ss_pred EEEeeccc
Confidence 77665433
No 77
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.60 E-value=1.3e-14 Score=82.57 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=58.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.|.|.| .+.|++++..+.. ..+..+...+....|.|.+++.+|+|.|.|.|.|..|.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGHVPD-SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeECCC-CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 6789999999999987 9999998765432 2233344445556799999999999999999999999775554443
No 78
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.60 E-value=1.3e-14 Score=85.01 Aligned_cols=84 Identities=19% Similarity=0.413 Sum_probs=61.2
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEecC---CeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
...+....+..|+++.|.|.+.+.| + .+.|++ ++..+...........+ .+|.|.+++.+|+|.|.|.+.|..|
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEP-K-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeC-C-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 3446667889999999999999885 4 899998 55554432222222211 3799999999999999999999877
Q ss_pred CCccceEEEE
Q psy10918 85 DGESNAFFLN 94 (207)
Q Consensus 85 ~~~~~~~~l~ 94 (207)
.....++.|+
T Consensus 82 ~~~~~sv~l~ 91 (92)
T cd04977 82 TESEATVNLK 91 (92)
T ss_pred CcceeEEEEE
Confidence 6555566554
No 79
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=1.2e-14 Score=81.10 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=53.6
Q ss_pred cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
.+.|.|.+.|.|.| .+.|++++..+.. .....+...+. |.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~~~~-~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDMVIP-SDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeECCC-CCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 36899999999998 9999999876432 22233333333 67779999999999999999999887665553
No 80
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=1.1e-14 Score=83.15 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=59.0
Q ss_pred CcEEEEeEecc--CCCCcEEEEEECCccccc-cccCCeEe-----cCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 21 SDVYFDCDIVA--VPPVYKVEWRHNNKTLHH-NIAQGIIM-----TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 21 ~~v~l~C~~~~--~~~~~~i~W~~~~~~~~~-~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
+++.|.|.+.. ...+ .+.|++||.++.. .....+.. ..+.|.|.+++..|+|.|+|.+.|..+.. +.+..
T Consensus 1 ~~~~l~C~v~~d~~l~~-~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDI-VFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCc-EEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEE
Confidence 46899999976 3455 8999999999863 22222222 34679999999999999999999998877 55777
Q ss_pred EEEEeCC
Q psy10918 93 LNVMYSP 99 (207)
Q Consensus 93 l~v~~~~ 99 (207)
|.|..+|
T Consensus 79 L~V~~pP 85 (85)
T cd05853 79 LIVRGPP 85 (85)
T ss_pred EEEecCC
Confidence 8888665
No 81
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.60 E-value=1e-14 Score=85.75 Aligned_cols=76 Identities=24% Similarity=0.400 Sum_probs=61.6
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec--CCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
..+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+........... ...|.|.+++..|+|.|.|.+.|..|..
T Consensus 8 ~~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 8 TKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred ccCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 34567888999999999999999988 9999999988765332222221 3579999999999999999999998865
No 82
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.60 E-value=1.3e-14 Score=84.76 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=56.1
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcC----ceeeecc-ceeEEee-------cCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNN----SAETVNV-AQAHILR-------SGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~----~~~~~~~-~~~~~~~-------~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
|+.+.|.|.+.|.|.| +|.|++++ ..+.... ....... .+....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 5789999999999998 99999963 2211111 1111111 12334689999999999999999999999
Q ss_pred CCccceEEEE
Q psy10918 182 HQRVPCVFHI 191 (207)
Q Consensus 182 ~~~~~~~~~v 191 (207)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9988877765
No 83
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.60 E-value=5.1e-15 Score=81.81 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=55.7
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
+.|.|.+.|.|.| .+.|++++..+... .... . ...|.|.++..+|+|.|+|.|.|..|......++.|++
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~~---~~~~-~--~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v 70 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVLN---HTFK-R--GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV 70 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC---CEEc-c--CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence 3689999999998 99999999875422 1221 1 23589999999999999999999999887777777653
No 84
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=8.2e-15 Score=82.29 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=57.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
|+++.|.|.+.+.|.+ .+.|++++..+..... .....+++|.|.+++.+|.|.|.|.+.|..|.. ...+.|.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTELLTNSSR-ICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEEcccCCC-EEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence 6789999999999887 9999999988765332 223445789999999999999999999998876 3355454
No 85
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.59 E-value=6.6e-15 Score=82.81 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=57.5
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccc-cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNI-AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
++|.|.+.|.|.| .+.|++++.++.... .......++.|.|.+++.+|+|.|.|.+.|..|...+....|.|
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 3789999999988 999999998776322 22233446689999999999999999999999987666666665
No 86
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=2.4e-14 Score=83.47 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=56.1
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
..+..|+.+.|.|.+.|.|. .+.|++++........+..+..++..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 10 VELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred eEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 35678999999999999774 89999854332222233444455656789999999999999999999999875
No 87
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.59 E-value=1.2e-14 Score=81.02 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=55.2
Q ss_pred cEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 22 ~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
++.|.|.+.|.|.| .++|++++..+..... ......+.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDMVIPSDY-FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeECCCCCC-EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence 47899999999988 9999999987765332 223345679999999999999999999999876 3355554
No 88
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.59 E-value=7.8e-15 Score=81.69 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=55.5
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.+.|.+ .+.|+|++.++... ......+.+|.|.+++.+|+|.|+|.+.|..|.. ...+.+.+
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEK--NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC--CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 4789999999988 99999999988764 2344556789999999999999999999988764 33444443
No 89
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.59 E-value=1.5e-14 Score=82.02 Aligned_cols=73 Identities=22% Similarity=0.428 Sum_probs=56.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccC-CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc-cceEEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE-SNAFFLNVM 96 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~~l~v~ 96 (207)
++|.|.+.+.|.| .+.|+|+|.++...... ......+.|.|.+++.+|+|.|.|.+.|..|... +..+.|.|.
T Consensus 1 v~L~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRP-TYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCC-cEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999999988 99999999987653322 2223346899999999999999999999988653 345555553
No 90
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.59 E-value=1.1e-14 Score=85.32 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=58.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC---CeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+....+.+|+++.|.|.+.+.|.+ .+.|++++..+............ .+|.|.+++.+|+|.|.|.+.|..|..
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 455678899999999999998887 89999999877653322222222 369999999999999999999988866
No 91
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.59 E-value=1.3e-14 Score=86.07 Aligned_cols=82 Identities=22% Similarity=0.476 Sum_probs=60.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc---CCeEe----cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA---QGIIM----TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~---~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+...+..|+++.|.|.+.|.|.| .++|++++..+..... ..... ..+.|.|.+++.+|+|.|.|.+.|..|
T Consensus 9 ~~~~~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 87 (97)
T cd05869 9 ENQTAMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIG 87 (97)
T ss_pred cCceEEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCC
Confidence 344444558999999999999988 9999998876643211 11111 124699999999999999999999999
Q ss_pred CCccceEEEEE
Q psy10918 85 DGESNAFFLNV 95 (207)
Q Consensus 85 ~~~~~~~~l~v 95 (207)
.. ...+.|.|
T Consensus 88 ~~-~~~~~l~v 97 (97)
T cd05869 88 QD-SQSMYLEV 97 (97)
T ss_pred Ce-eEEEEEEC
Confidence 77 44555543
No 92
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.59 E-value=4.3e-14 Score=84.57 Aligned_cols=85 Identities=18% Similarity=0.373 Sum_probs=59.0
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec----cceeEEeecCceEEEEEec--CCCCCCeEEEEEEecC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN----VAQAHILRSGTLSVVAYSP--NSELDYGTLICWGSNK 179 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~--~~~~~~g~y~C~~~n~ 179 (207)
+....+.+|+.+.|.|.+.|.|.| .+.|+++|..+... ........++....+.+.. ...+|+|.|+|.|.|.
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~ 86 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNS 86 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcc
Confidence 344567789999999999999987 99999998775431 1112223344433444432 3688999999999999
Q ss_pred CCC-CccceEEEE
Q psy10918 180 IGH-QRVPCVFHI 191 (207)
Q Consensus 180 ~g~-~~~~~~~~v 191 (207)
.|. .++.+.+.|
T Consensus 87 ~G~~~s~~~~l~v 99 (100)
T cd07693 87 LGEAVSRNASLEV 99 (100)
T ss_pred ccceecceEEEEe
Confidence 998 555555543
No 93
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.58 E-value=8.4e-15 Score=85.90 Aligned_cols=86 Identities=29% Similarity=0.539 Sum_probs=67.3
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
|...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......... ...+|.|.+++.+|+|.|+|.+.|..|.
T Consensus 3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~ 81 (90)
T PF07679_consen 3 FTKKPKDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE 81 (90)
T ss_dssp EEEESSEEEEETTSEEEEEEEEEESSSS-EEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE
T ss_pred EEEecCCEEEeCCCEEEEEEEEEeCCCC-cccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE
Confidence 4456788889999999999999998877 999999999888643333332 2356999999999999999999988665
Q ss_pred CccceEEEEE
Q psy10918 86 GESNAFFLNV 95 (207)
Q Consensus 86 ~~~~~~~l~v 95 (207)
. ...+.|.|
T Consensus 82 ~-~~~~~l~V 90 (90)
T PF07679_consen 82 A-TASVNLTV 90 (90)
T ss_dssp E-EEEEEEEE
T ss_pred E-EEEEEEEC
Confidence 5 33455543
No 94
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.58 E-value=2.5e-14 Score=83.91 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=66.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+.. .....+...+..+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~ 85 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRPLTS-SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATAS 85 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSS-EEEEEETTEEEES-SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCC-cccccccccceee-eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEE
Confidence 44567899999999999999887 9999999877654 334555556678889999999999999999999998887666
Q ss_pred eEEE
Q psy10918 187 CVFH 190 (207)
Q Consensus 187 ~~~~ 190 (207)
+.+.
T Consensus 86 ~~l~ 89 (90)
T PF07679_consen 86 VNLT 89 (90)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 95
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=2.5e-14 Score=83.89 Aligned_cols=72 Identities=28% Similarity=0.421 Sum_probs=57.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecC-CCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN-RQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
|..+.|.|.+.|.|.+ .++|++++..+.... ......++.|.|.++. .+|+|.|.|.+.|..|...++.++|
T Consensus 19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~i~~~~-~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFP-IYKWRKNNLDIDLTN-DRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCC-EEEEEECCEEccCCC-CeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 4479999999999988 999999998875322 2344557889999885 6899999999999999876665554
No 96
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.57 E-value=1e-14 Score=81.26 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=55.0
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.|.|.+.|.|+| .+.|+++|..+... .+.... ...|.|.++..+|+|.|+|.|.|..|....+..+.++
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~---~~~~~~--~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEK---NRTKKS--GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC---CEEEcC--CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999999998 99999998775432 122222 2469999999999999999999999987777766665
No 97
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.57 E-value=2e-14 Score=82.13 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=57.0
Q ss_pred CcEEEEEEeccCC-CCceEEEEEcCceeeeccceeEEeec---CceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 115 EKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRS---GTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 115 ~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+++.|.|.+.+.+ .++.|.|+++|..+.......++... .....|.|.+++..|+|.|+|.|+|..+..+.++.+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 3689999998744 23599999999887533222222221 1233699999999999999999999999887776665
Q ss_pred Ee
Q psy10918 191 IV 192 (207)
Q Consensus 191 v~ 192 (207)
|.
T Consensus 81 V~ 82 (85)
T cd05853 81 VR 82 (85)
T ss_pred Ee
Confidence 54
No 98
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.57 E-value=1.7e-14 Score=81.20 Aligned_cols=70 Identities=31% Similarity=0.507 Sum_probs=53.4
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeE-ecC---CeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII-MTN---QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~---~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
+.|.|.+.|.|.| .+.|+|++..+......... ..+ .+|.|.+++.+|+|.|+|.+.|..|.. .....|.
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD 74 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence 4799999999998 99999999888743222211 121 159999999999999999999999876 3345554
No 99
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.57 E-value=1.6e-14 Score=80.58 Aligned_cols=70 Identities=24% Similarity=0.475 Sum_probs=55.6
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.|.|.| .+.|++++..+.... ......+.+|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGPLSPNR-TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcCCCCCc-eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 4789999999998 999999988775432 2233456789999999999999999999999876 44555554
No 100
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.57 E-value=1.1e-14 Score=83.87 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=58.2
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
...|+++.|.|.+.+.|.+ .+.|++++..+..............|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus 6 ~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~ 81 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRP-DITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVD 81 (82)
T ss_pred ccCCCeEEEEEEeeEeCCC-cEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEe
Confidence 4569999999999998887 89999999877543222222223579999999999999999999988865 4344443
No 101
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.57 E-value=4.9e-14 Score=82.46 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=59.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccc------cccCCeE-ecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHH------NIAQGII-MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~------~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
|+++.|.|.+.+.|.+ .+.|++++..+.. ....++. ..++.|.|.+++.+|+|.|.|.+.|..|.. ...+.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAY 78 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEE
Confidence 6789999999999888 9999998864310 0111222 335689999999999999999999999976 45677
Q ss_pred EEEEeC
Q psy10918 93 LNVMYS 98 (207)
Q Consensus 93 l~v~~~ 98 (207)
|.|...
T Consensus 79 l~V~~~ 84 (90)
T cd05726 79 LEVTDV 84 (90)
T ss_pred EEEeec
Confidence 887743
No 102
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=3.9e-14 Score=79.80 Aligned_cols=73 Identities=15% Similarity=0.361 Sum_probs=53.4
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.+.|.| .+.|++++............... ..|.|..+..+|+|.|+|.|.|..|..+..+.+.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDGKLISNSSRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCCEEecCCCeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 6789999999999887 99999854433222222222222 2488889999999999999999999876655443
No 103
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.56 E-value=4.6e-14 Score=82.54 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=56.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcC----ceeeecc-ceeEEee-------cCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNN----SAETVNV-AQAHILR-------SGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~----~~~~~~~-~~~~~~~-------~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
|+.+.|.|.+.+.|.| .+.|++++ ..+.... ....... ....+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6789999999999998 99999843 2221111 1111111 12235799999999999999999999999
Q ss_pred CCccceEEEE
Q psy10918 182 HQRVPCVFHI 191 (207)
Q Consensus 182 ~~~~~~~~~v 191 (207)
....++.+.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9888877766
No 104
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=2.5e-14 Score=82.81 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=59.0
Q ss_pred CcEEEEeEeccCCCC-cEEEEEECCcccccccc-C-----CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 21 SDVYFDCDIVAVPPV-YKVEWRHNNKTLHHNIA-Q-----GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~-~~i~W~~~~~~~~~~~~-~-----~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+++.|.|.+.+.|.+ ..+.|++++..+..... . ......+.|.|.+++..|+|.|.|.+.|..|.. .....|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEE
Confidence 468999999988765 25789999988753211 1 111235689999999999999999999988876 557778
Q ss_pred EEEeCC
Q psy10918 94 NVMYSP 99 (207)
Q Consensus 94 ~v~~~~ 99 (207)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 887654
No 105
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=2.5e-14 Score=80.30 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=55.7
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.+.|.| .+.|++++..+.. .....+..++ .|.|.+++.+|+|.|+|.|.|..|..+.++.+.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~-~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTELLTN-SSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEEccc-CCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 6789999999999987 9999999876432 1222222222 489999999999999999999999887665554
No 106
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=5.3e-14 Score=81.42 Aligned_cols=81 Identities=11% Similarity=0.219 Sum_probs=57.4
Q ss_pred CcEEEEEEeccCCCC-ceEEEEEcCceeeecccee---EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 115 EKVNISCEVDANPPD-VKFSWTFNNSAETVNVAQA---HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 115 ~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.+.|.|.+.+.|.+ ..+.|+++|..+....... ..........|.|.+++..|+|.|+|.|.|..|..+.++.+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 368999999998864 3679999988764332211 111122344699999999999999999999999886665544
Q ss_pred EeecccC
Q psy10918 191 IVSAVTF 197 (207)
Q Consensus 191 v~~~~~~ 197 (207)
+.++|
T Consensus 81 --V~~pP 85 (85)
T cd04970 81 --VRGPP 85 (85)
T ss_pred --EECCC
Confidence 44443
No 107
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.56 E-value=1.9e-14 Score=84.40 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=59.9
Q ss_pred CCcccCCCcEEEEeEecc-----CCCCcEEEEEECCcccccc--ccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVA-----VPPVYKVEWRHNNKTLHHN--IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~-----~~~~~~i~W~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...+.+|+.+.|.|.+.+ .|.+ .+.|||++..+... ...++...+..|.|.+++.+|+|.|.|.+.|..|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 456778999999999988 5666 89999998764321 223344456789999999999999999999988765
Q ss_pred ccceEEEE
Q psy10918 87 ESNAFFLN 94 (207)
Q Consensus 87 ~~~~~~l~ 94 (207)
...+.|.
T Consensus 87 -~~~~~L~ 93 (94)
T cd05756 87 -KVSISLT 93 (94)
T ss_pred -EEEEEEE
Confidence 3344444
No 108
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.56 E-value=6.7e-14 Score=83.20 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=60.9
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEEC--Cccccccc---cCCeEe----cCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHN--NKTLHHNI---AQGIIM----TNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~--~~~~~~~~---~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+.+..+.+|++++|.|.+.+.|.| .+.|+++ +..+.... ..++.. ...+|.|.+++.+|+|.|.|.+.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 86 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASR 86 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEecc
Confidence 566788999999999999999988 9999994 33332110 112221 1247999999999999999999999
Q ss_pred CCCCccceEEEEE
Q psy10918 83 EGDGESNAFFLNV 95 (207)
Q Consensus 83 ~~~~~~~~~~l~v 95 (207)
.|.. ...+.|+|
T Consensus 87 ~G~~-~~~~~l~~ 98 (98)
T cd05870 87 IGGH-QKSMYLDI 98 (98)
T ss_pred CCcc-eeEEEEeC
Confidence 9976 44665553
No 109
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.56 E-value=2.5e-14 Score=79.02 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=50.9
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.|.|.+.|.|.| .+.|+|++.++.... ....+..|.|.++..+|+|.|+|.+.|..|..
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~~~---~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~ 60 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVLNH---TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE 60 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCCC---EEccCCEEEECcCCHHHCEEEEEEEEECCCce
Confidence 4689999999998 999999999886532 22345679999999999999999999999866
No 110
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=4.1e-14 Score=79.70 Aligned_cols=72 Identities=17% Similarity=0.426 Sum_probs=55.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEE-CCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
|+.+.|.|.+.+.|.+ .+.|++ ++..+... .......+++|.|.++..+|.|.|.|.+.|..|.. +..+.|.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDGKLISNS-SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCCEEecCC-CeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEE
Confidence 6889999999999887 999997 55554432 22333456789999999999999999999998865 4455444
No 111
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.55 E-value=2.7e-14 Score=79.60 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=52.4
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|.| .+.|++++..+... ..... .....|.|.+++.+|+|.|+|.|.|..|..+.++.+.
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~~~~~--~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 69 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGPLSPN--RTKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT 69 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcCCCCC--ceeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence 4789999999998 99999988754321 11121 2234699999999999999999999999876665443
No 112
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.55 E-value=3.4e-14 Score=84.28 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=61.8
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccccccc---CCeEe----cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIA---QGIIM----TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~---~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+.+..+.+|+++.|.|.+.+.|.+ .+.|++++..+..... .++.. ....|.|.+++.+|+|.|.|.+.|..|
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 86 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIG 86 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCC
Confidence 445678899999999999999887 9999999866553211 11111 124799999999999999999999999
Q ss_pred CCccceEEEE
Q psy10918 85 DGESNAFFLN 94 (207)
Q Consensus 85 ~~~~~~~~l~ 94 (207)
.. ..++.|.
T Consensus 87 ~~-~~s~~l~ 95 (96)
T cd05732 87 GD-QQSMYLE 95 (96)
T ss_pred Cc-EEEEEEe
Confidence 86 5465554
No 113
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.55 E-value=4.1e-14 Score=82.67 Aligned_cols=74 Identities=24% Similarity=0.381 Sum_probs=54.3
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECC----ccccccccCC-----------eEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNN----KTLHHNIAQG-----------IIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~----~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
|+++.|.|.+.+.|.| .|+|+|++ ..+....... .......|.|.+++.+|+|.|.|.+.|..|
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 6789999999999988 99999964 2221111110 001234699999999999999999999999
Q ss_pred CCccceEEEEE
Q psy10918 85 DGESNAFFLNV 95 (207)
Q Consensus 85 ~~~~~~~~l~v 95 (207)
.. ..++.|.|
T Consensus 80 ~~-~~sa~L~V 89 (90)
T cd04974 80 PS-HHSAWLTV 89 (90)
T ss_pred cc-cCCEEEEe
Confidence 87 44666766
No 114
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.55 E-value=5.8e-14 Score=81.16 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=60.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|+.+.|.|.+.|.|.| .+.|++++..+... . .+.... ..|.|.++..+|+|.|+|.|.|..|....+
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~~~~~-~--~~~~~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRP-AYRWLKNGQPLASE-N--RIEVEA--GDLRITKLSLSDSGMYQCVAENKHGTIYAS 80 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEECCCC-C--eEEEeC--CEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence 34457789999999999999987 99999998865321 1 122222 258899999999999999999999987666
Q ss_pred eEEE
Q psy10918 187 CVFH 190 (207)
Q Consensus 187 ~~~~ 190 (207)
+.+.
T Consensus 81 ~~l~ 84 (85)
T cd05728 81 AELA 84 (85)
T ss_pred EEEE
Confidence 5543
No 115
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.54 E-value=1e-13 Score=80.89 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=55.3
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
...+.+|+.+.|.|.+.|. .| .+.|++++..+.. ....+. .....|.|.+++.+|+|.|.|.|.|..|...
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~l~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSLLVP--PRLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMT 82 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CC-EEEEEECCEECCC--CCEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEE
Confidence 3457789999999999999 76 9999999876432 222222 2233699999999999999999999999753
No 116
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.54 E-value=5.8e-14 Score=79.28 Aligned_cols=71 Identities=18% Similarity=0.388 Sum_probs=53.0
Q ss_pred EEEEeEeccCCCCcEEEEEECCcccc-ccccCC--eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLH-HNIAQG--IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~-~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.|.|.| .+.|++++.... .....+ ....+..|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 3689999999998 999999986432 211112 22345689999999999999999999998875 44566665
No 117
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.54 E-value=4.8e-14 Score=78.25 Aligned_cols=68 Identities=28% Similarity=0.507 Sum_probs=53.2
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
++|.|.+.+.|.+ .+.|++++..+... ......+..|.|.+++.+|+|.|.|.+.|..|.. .....|.
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGELPKG--RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLT 68 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCccCCCC--cEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence 4799999999988 99999998766542 2223356789999999999999999999998876 3344444
No 118
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.54 E-value=9e-14 Score=78.30 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=52.7
Q ss_pred EEEEEeccCCCCceEEEEEcCceeeeccce-eEEee---cCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 118 NISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILR---SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 118 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.|.+.|.|.| ++.|+++|..+...... ..+.. ......|.|.++..+|+|.|+|.|+|..|...+...+
T Consensus 2 ~i~~~v~G~P~P-ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 2 CIPFTVKGNPKP-TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred eEEEEEeEeCCC-ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 478999999998 99999999876432211 11111 1224579999999999999999999999988666443
No 119
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.54 E-value=5.7e-14 Score=79.12 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=55.0
Q ss_pred cEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--cCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 22 ~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
.+.|.|.+.|.|.| .+.|++++..+.......+.. ....|.|.++...|+|.|+|.+.|..|.. +..+.|.
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence 37899999999998 999999999885433222222 23569999999999999999999998875 4455444
No 120
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=2.7e-14 Score=79.21 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=51.4
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
|.|.|.+.+.|.| .+.|++++..+.... ......++.|.|.+++.+|+|.|.|.+.|..|..
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGVQVTESG-KFHISPEGYLAIRDVGVADQGRYECVARNTIGYA 62 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCEECCCCC-CEEECCCCEEEECcCChhhCEEEEEEEECCCCcE
Confidence 4799999999988 899999998876432 2223346789999999999999999999998876
No 121
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=6e-14 Score=77.88 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=51.9
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
+.|.|.+.|.|+| .+.|++++..+. ........ ...|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~--~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGELP--KGRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCccCC--CCcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 4799999999987 999999876542 22222322 22599999999999999999999999876665543
No 122
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.53 E-value=1e-13 Score=78.40 Aligned_cols=70 Identities=21% Similarity=0.453 Sum_probs=52.4
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCCeEEEEecCC----CCCeeeEEEEeeeCCCCccceEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNR----QSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+.|.|.+.|.|.| +++|++++.++......... ..+++|.|..+.. .|+|.|.|.+.|..|...+..+.|
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 4789999999988 99999999887432222222 3467888887764 378999999999998776655443
No 123
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.53 E-value=8.9e-14 Score=79.79 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=59.2
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
....+.+|++++|.|.+.......++.|++++..+.. ...+..|.|.+++.+|+|.|+|.+.+..+...+..+.
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~ 80 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVS 80 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEE
Confidence 3456889999999999854333338999999976542 1224679999999999999999999988766676666
Q ss_pred EEE
Q psy10918 93 LNV 95 (207)
Q Consensus 93 l~v 95 (207)
|+|
T Consensus 81 i~~ 83 (83)
T cd05753 81 ITV 83 (83)
T ss_pred EEC
Confidence 654
No 124
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.53 E-value=2.2e-13 Score=79.13 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=55.7
Q ss_pred eeeeeeCCcEEEEEEe-ccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 108 VLGVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
...+..|+.+.|.|.+ .+.|.+ .+.|++++..+........... ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 3456789999999998 677776 9999999876543222222222 23599999999999999999999998753
No 125
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.53 E-value=1.1e-13 Score=78.46 Aligned_cols=70 Identities=23% Similarity=0.467 Sum_probs=53.5
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCCeEEEEecCC----CCCeeeEEEEeeeCCCCccceEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNR----QSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+.|.|.+.|.|.| .++|++++..+......... ..++.|.|.++.. +|+|.|.|.+.|..|...+..+.|
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 4789999999988 99999999887543222222 3457899998754 689999999999999876655443
No 126
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.52 E-value=1.4e-13 Score=78.47 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=52.7
Q ss_pred EEEEEeccCCCCceEEEEEcCceeeeccce-eEEee-----cCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 118 NISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILR-----SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 118 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~-----~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.|.+.|.|.| .++|+++|..+...... ..... ......|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 2 ~i~~~v~G~P~P-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 2 CIPFTVRGNPKP-TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred eEEEEeEeeCCC-cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 368999999998 99999999876433211 11111 1224569999999999999999999999988666444
No 127
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.52 E-value=1.4e-13 Score=83.17 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=60.9
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe-E------ecCCeEEEEecC-CCCCeeeEEEEeeeCCCCccce
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-I------MTNQSLVLQRVN-RQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~------~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
.|..+.|.|.+.+.|.+ .+.|++++..+........ . ...+.|.|.++. .+|.|.|.|.+.|..|.. ...
T Consensus 22 ~g~~v~L~C~a~G~P~p-~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~ 99 (109)
T cd05773 22 GSSDANLVCQAQGVPRV-QFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLD 99 (109)
T ss_pred CCCEEEEEEECcccCCC-EEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEE
Confidence 46789999999999987 9999999988764322111 1 113569999987 589999999999999987 557
Q ss_pred EEEEEEeCC
Q psy10918 91 FFLNVMYSP 99 (207)
Q Consensus 91 ~~l~v~~~~ 99 (207)
+.|.+...|
T Consensus 100 i~L~~~~~p 108 (109)
T cd05773 100 IQLVSTSRP 108 (109)
T ss_pred EEEEecCCC
Confidence 778877655
No 128
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=4.4e-14 Score=78.33 Aligned_cols=67 Identities=25% Similarity=0.406 Sum_probs=51.2
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
+.|.|.+.|.|.| .+.|++++..+.. .....+... ..|.|.++..+|+|.|+|.|.|..|..+.+..
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~~~~~-~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGVQVTE-SGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCEECCC-CCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 4799999999998 9999998865432 112222222 35999999999999999999999998865544
No 129
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.52 E-value=1.3e-13 Score=76.15 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=49.6
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
|+++.|.|.+.|.|.| .++|++++.++.... ........|.|.++ .|+|.|+|.+.|..|..
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~~~--~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~ 62 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTKED--EMPVGRNVLELTNI--YESANYTCVAISSLGMI 62 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCCcc--ceecCccEEEEecc--ccCeeEEEEEEeCCCEE
Confidence 6789999999999998 999999998875432 22233456888887 47999999999998865
No 130
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.52 E-value=2.9e-13 Score=79.37 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEE-cCceeeeccceeEEe-ecCceEEEEEecCCCCCCeEEEEEEecCCCC-Ccc
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTF-NNSAETVNVAQAHIL-RSGTLSVVAYSPNSELDYGTLICWGSNKIGH-QRV 185 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~~ 185 (207)
..+..|+.+.|.|.+.|.| + .+.|++ ++..+.. ....... .....+.|.|.+++.+|+|.|+|.|.|..|. ...
T Consensus 10 ~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~ 86 (92)
T cd04977 10 GEISVGESKFFLCQVIGEP-K-DISWFSPNGEKLVT-QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA 86 (92)
T ss_pred EEECCCCeEEEEEEeEeeC-C-eEEEECCCCCEecc-CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence 4577899999999999985 4 999998 4443322 1222222 2334568999999999999999999998754 334
Q ss_pred ceEE
Q psy10918 186 PCVF 189 (207)
Q Consensus 186 ~~~~ 189 (207)
++.+
T Consensus 87 sv~l 90 (92)
T cd04977 87 TVNL 90 (92)
T ss_pred EEEE
Confidence 4333
No 131
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.52 E-value=6e-14 Score=79.76 Aligned_cols=68 Identities=25% Similarity=0.418 Sum_probs=53.7
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec--CCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
|+++.|.|.+.+.|.| .+.|++++..+........... ...|.|.+++.+|+|.|.|.+.|..|...+
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG 70 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence 6789999999999988 9999999887765332222222 246999999999999999999998886543
No 132
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.51 E-value=4.7e-13 Score=79.56 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=59.6
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-ceeEEeec----CceEEEEEecCCCC-CCeEEEEEEecCCCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-AQAHILRS----GTLSVVAYSPNSEL-DYGTLICWGSNKIGH 182 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~-~~g~y~C~~~n~~g~ 182 (207)
..+..|+.+.|.|.+.|.|.|..+.|++++..+.... .+..+... +..+.|.|.++..+ |.|.|.|.|.|..|.
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~ 90 (98)
T cd05758 11 QYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGS 90 (98)
T ss_pred EEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCc
Confidence 3467899999999999998874699999887654322 22333222 23467999999985 489999999999998
Q ss_pred CccceE
Q psy10918 183 QRVPCV 188 (207)
Q Consensus 183 ~~~~~~ 188 (207)
....+.
T Consensus 91 ~~~~~~ 96 (98)
T cd05758 91 GTAIIS 96 (98)
T ss_pred ccEEEE
Confidence 765543
No 133
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.51 E-value=6.6e-14 Score=78.27 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=52.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
+.|.|.+.|.|.| .+.|++++..+... .... ......|.|.+++.+|+|.|+|.|.|..|..+..+.+.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~~--~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGELPAD--RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeECCCC--ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4789999999988 99999988654221 1111 222346999999999999999999999998766655443
No 134
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.51 E-value=2.1e-13 Score=76.69 Aligned_cols=72 Identities=17% Similarity=0.350 Sum_probs=52.1
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC-ccceEEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ-RVPCVFHI 191 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~~~v 191 (207)
+.|.|.+.|.|.| .+.|++++..+.... ..++..... ..|.|.+++.+|+|.|+|.|.|..|.. +..+.+.|
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~~~~~~-~~~~~~~~~-g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLPVDTTS-NGRIKQLRS-GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECccCC-CCCEEEcCC-cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999998 999999987653211 112222222 248899999999999999999999874 45555544
No 135
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.50 E-value=1.2e-13 Score=77.81 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=51.9
Q ss_pred EEeEeccCCCCcEEEEEECCccccccccCCe--E-----ecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 25 FDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--I-----MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 25 l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~-----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
|.|.+.|.|.| .++|+|+|.++........ . ...+.|.|.++...|+|.|+|.|.|..|.. ...+.+
T Consensus 3 i~~~v~G~P~P-ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKP-TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSA 76 (79)
T ss_pred EEEEEeEeCCC-ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEe
Confidence 78999999998 9999999999975432111 1 112469999999999999999999999976 434433
No 136
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.50 E-value=1.8e-13 Score=78.02 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=54.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccc-------cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHH-------NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
++|.|.+.|.|.| .+.|++++..... .........+++|.|.+++.+|+|.|.|.+.|..|...+..+.|+|
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4799999999988 9999996432111 1111122346789999999999999999999999987777776653
No 137
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.50 E-value=1.6e-13 Score=79.02 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=57.1
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
...|+.+.|.|.+.+.|.| .+.|++++..+..... .........|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus 6 ~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRP-DITWLKDNKPLTPTEI---GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred ccCCCeEEEEEEeeEeCCC-cEEEEECCcCCcCCcc---ceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 4578999999999999987 9999998876532211 1112233569999999999999999999999987555443
No 138
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.50 E-value=2.6e-13 Score=79.57 Aligned_cols=70 Identities=23% Similarity=0.479 Sum_probs=55.3
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCC-CCCeeeEEEEeeeCCCCccc
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR-QSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~~~~~~~~~~ 89 (207)
.|+++.|.|.+.+.|.+ .++|++++..+...........++.|.|.++.. +|+|.|.|.+.|..|...++
T Consensus 18 ~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 18 DEGKVSLNCRARGSPPP-TYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCCEEEEEEeeeEcCCC-EEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 34579999999998887 999999998875433344555667899998874 89999999999998865443
No 139
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.50 E-value=2.6e-13 Score=76.74 Aligned_cols=70 Identities=21% Similarity=0.411 Sum_probs=52.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccC--CeEecCCeEEEEecC----CCCCeeeEEEEeeeCCCCccceEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ--GIIMTNQSLVLQRVN----RQSAGNYTCVGFNIEGDGESNAFFL 93 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~l~i~~~~----~~d~g~Y~C~~~~~~~~~~~~~~~l 93 (207)
+.|.|.+.|.|.| .++|++++..+...... .....+++|.|..+. .+|+|.|.|.+.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4789999999998 99999999876432222 222356789998764 2469999999999999776655443
No 140
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.50 E-value=1.9e-13 Score=77.23 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=52.2
Q ss_pred EEEEEEecc-CCCCceEEEEEcCceeeecccee--EEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 117 VNISCEVDA-NPPDVKFSWTFNNSAETVNVAQA--HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 117 ~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
+.|.|.+.+ .|.+ .+.|++++..+....... .+........|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 479999999 7776 999999987654322111 13233445679999999999999999999999987544
No 141
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.50 E-value=3e-13 Score=76.57 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=55.3
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
+.|.|.+.|.|+| .+.|++++..+.... ..++........|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~v~g~P~p-~v~W~k~~~~l~~~~-~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLP-RLTWLKNGMDITPKL-SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCC-EEEEEECCEECCCCC-CccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 4689999999987 999999987654321 122222333446999999999999999999999998876666554
No 142
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.50 E-value=9.8e-14 Score=77.55 Aligned_cols=70 Identities=19% Similarity=0.410 Sum_probs=54.0
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+.|.|.+.+.|.| .+.|++++..+... .......+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 4789999999988 89999998776542 12222335689999999999999999999998865 44555554
No 143
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.49 E-value=2.1e-13 Score=75.33 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=49.8
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
|+.+.|.|.+.|.|.| .+.|++++..+.... ... .+ ...|.|.++ .|+|.|+|.|.|..|....++.
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~~~---~~~-~~-~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTKED---EMP-VG-RNVLELTNI--YESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCCcc---cee-cC-ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence 5789999999999998 999999987643211 111 12 235888876 4789999999999998765544
No 144
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.49 E-value=3.6e-13 Score=79.25 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=50.7
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC-CCCCeEEEEEEecCCCCCc
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~ 184 (207)
+|+.+.|.|.+.|.|.| .+.|++++..+..... ..+..... .|.|.++. .+|+|.|+|.|.|..|...
T Consensus 18 ~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~~~~~-~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEARGNPVP-TYRWLRNGTEIDTESD-YRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEeeecCCC-EEEEEECCeECccCCC-ceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 47899999999999998 9999999877542221 12222222 47777774 6899999999999999763
No 145
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.49 E-value=2.8e-13 Score=79.18 Aligned_cols=74 Identities=23% Similarity=0.382 Sum_probs=54.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEEC----CccccccccCCe-E-e---------cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHN----NKTLHHNIAQGI-I-M---------TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~----~~~~~~~~~~~~-~-~---------~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
|+++.|.|.+.+.|.| .+.|+++ +..+........ . . ....|.|.+++.+|+|.|.|.+.|..|
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6789999999999988 9999984 333321111000 0 0 114699999999999999999999999
Q ss_pred CCccceEEEEE
Q psy10918 85 DGESNAFFLNV 95 (207)
Q Consensus 85 ~~~~~~~~l~v 95 (207)
.. ..+..|.|
T Consensus 80 ~~-~~~a~L~V 89 (90)
T cd05858 80 IS-HHSAWLTV 89 (90)
T ss_pred cc-cceEEEEE
Confidence 76 44666766
No 146
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.49 E-value=2.5e-13 Score=79.31 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=60.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
....+.+|+++.|.|.+.+ +.+ .+.|++++..+.... ..........|.|.+++.+|+|.|.|.+.+..+.....+
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 3445778999999999876 555 899999998765432 123334456699999999999999999987655444556
Q ss_pred EEEEEE
Q psy10918 91 FFLNVM 96 (207)
Q Consensus 91 ~~l~v~ 96 (207)
+.|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 666664
No 147
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.49 E-value=2.1e-13 Score=77.71 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=49.5
Q ss_pred EEEeEeccCCCCcEEEEEECCccccccccCCeE---------ecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 24 YFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII---------MTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 24 ~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
.|.|.+.|.|.| .++|+|+|.++......... ...+.|.|.+++..|+|.|+|.|.|..|..
T Consensus 2 ~i~~~v~G~P~P-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 2 CIPFTVRGNPKP-TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred eEEEEeEeeCCC-cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 368999999998 99999999988764322111 112369999999999999999999999876
No 148
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.48 E-value=2.1e-13 Score=75.51 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=52.4
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
+.|.|.+.|.|+| ++.|++++..+.... .....++ ..|.|.+++.+|+|.|+|.|+|......+...+.++
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~~--~~~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~ 71 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGLPAAEKC--SRYHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLI 71 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCEECCCCC--cEEEeCC--CEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence 3689999999998 999999987653221 2222333 259999999999999999999987665555444443
No 149
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.48 E-value=1.3e-13 Score=76.31 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=48.7
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+.|.|.+.|.|.| .+.|+|++.++.... ......+.+|.|.+++.+|+|.|+|.+.+..
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~ 59 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGLPAAEKC-SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQ 59 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCEECCCCC-cEEEeCCCEEEECcCCHHHCEEEEEEEEccc
Confidence 4689999999998 999999998876532 2334456689999999999999999999764
No 150
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.48 E-value=7.1e-13 Score=75.46 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=55.2
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
..+.+|+.+.|.|.+.+. .+ .+.|+++|..+... .+..+ .+ ..|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~l~~~-~~~~~--~~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQLGEN-NRTRI--TG--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred EEecCCCCEEEEEEecCC-Cc-eEEEeeCCcCCCCC-ceEEE--eC--CEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 346789999999999986 44 89999998775422 12222 22 25899999999999999999999887655433
No 151
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.47 E-value=2e-12 Score=75.83 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=61.4
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeec-cceeEEee----cCceEEEEEecCCCCC-CeEEEEEEecCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVN-VAQAHILR----SGTLSVVAYSPNSELD-YGTLICWGSNKI 180 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~----~~~~~~l~i~~~~~~~-~g~y~C~~~n~~ 180 (207)
....+.+|+.+.|.|.+.+.|+|..|.|.+++..+... ..+..+.. .+..+.|.|.++...| .|.|.|.|.|.+
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 34456799999999999999988789999887654332 12222322 3467889999998767 799999999999
Q ss_pred CCCccceE
Q psy10918 181 GHQRVPCV 188 (207)
Q Consensus 181 g~~~~~~~ 188 (207)
|.......
T Consensus 89 G~d~~~i~ 96 (98)
T cd05898 89 GSGTAIIQ 96 (98)
T ss_pred ccceEEEE
Confidence 98865543
No 152
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.47 E-value=5.7e-13 Score=75.39 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=50.9
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeecc---ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNV---AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
+.|.|.+.+.++++.+.|++++..+.... .............|.|.++..+|+|.|.|.|.|..|....++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 47899987643334999999987764321 111222233456799999999999999999999999875553
No 153
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.46 E-value=9.8e-13 Score=77.76 Aligned_cols=72 Identities=19% Similarity=0.389 Sum_probs=51.8
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccce-eEEeecCceEEEEEecC-----CCCCCeEEEEEEecC-C
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQ-AHILRSGTLSVVAYSPN-----SELDYGTLICWGSNK-I 180 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~-----~~~~~g~y~C~~~n~-~ 180 (207)
...+.+|+.+.|.|.+.+.|+| .+.|+++|..+...... .....++. +.+.++ ...|.|.|+|.|.|. .
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~---l~i~~v~~~~~~~~D~G~Y~C~a~N~~~ 83 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPNGS---LLITSVVHSKHNKPDEGFYQCVAQNDSL 83 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCC-EEEEEECCeECccccCcceEEccCCe---EEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence 3455689999999999999987 99999998876433221 22222332 344443 578999999999999 8
Q ss_pred CCC
Q psy10918 181 GHQ 183 (207)
Q Consensus 181 g~~ 183 (207)
|..
T Consensus 84 G~~ 86 (95)
T cd05722 84 GSI 86 (95)
T ss_pred CcE
Confidence 865
No 154
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.46 E-value=4.3e-13 Score=76.99 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=52.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCce---eeeccce--eEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSA---ETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~---~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
|+.+.|.|.+.+.|.| .+.|++++.. ....... ..+.. .....|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 6789999999999987 9999997421 1111100 01111 12246999999999999999999999998765544
Q ss_pred E
Q psy10918 189 F 189 (207)
Q Consensus 189 ~ 189 (207)
|
T Consensus 79 l 79 (81)
T cd05765 79 L 79 (81)
T ss_pred E
Confidence 4
No 155
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.46 E-value=8.6e-13 Score=78.42 Aligned_cols=74 Identities=16% Similarity=0.366 Sum_probs=56.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEec-C-------CeEEEEecCCC-CCeeeEEEEeeeC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-N-------QSLVLQRVNRQ-SAGNYTCVGFNIE 83 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~-------~~l~i~~~~~~-d~g~Y~C~~~~~~ 83 (207)
....+.+|+++.|.|.+.+.|.|..+.|++++..+......++... . ++|.|.+++.+ |.|.|.|.+.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 4556788999999999999888746999999988765322222211 1 36999999984 5899999999999
Q ss_pred CCC
Q psy10918 84 GDG 86 (207)
Q Consensus 84 ~~~ 86 (207)
|..
T Consensus 89 G~~ 91 (98)
T cd05758 89 GSG 91 (98)
T ss_pred Ccc
Confidence 876
No 156
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=9.5e-13 Score=77.48 Aligned_cols=67 Identities=24% Similarity=0.481 Sum_probs=49.5
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC-CCCCeEEEEEEecCCCCCc
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~ 184 (207)
|+.+.|.|.+.|.|.+ .+.|+++|..+............+ .|.|.++. ..|+|.|+|.|+|..|...
T Consensus 19 g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05850 19 EEKVTLGCRARASPPA-TYRWKMNGTEIKFAPESRYTLVAG---NLVINNPQKARDAGSYQCLAINRCGTVV 86 (94)
T ss_pred CCeEEEEeEceeCCCC-EEEEEECCEECccCCCceEEEECC---eEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence 5689999999999987 999999988764322111112222 47776654 5899999999999999763
No 157
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.46 E-value=6.3e-13 Score=77.98 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=58.2
Q ss_pred eeeeeCCcEEEEEEecc-----CCCCceEEEEEcCceeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 109 LGVARQEKVNISCEVDA-----NPPDVKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~-----~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
..+.+|+.+.|.|.+.+ .|.+ .+.|++++..+.... ...++...+ ..|.|.++..+|+|.|+|.+.|..|.
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCcc
Confidence 34568999999999998 5666 999999986543221 122332222 35899999999999999999999988
Q ss_pred CccceEEE
Q psy10918 183 QRVPCVFH 190 (207)
Q Consensus 183 ~~~~~~~~ 190 (207)
...++.|.
T Consensus 86 ~~~~~~L~ 93 (94)
T cd05756 86 MKVSISLT 93 (94)
T ss_pred EEEEEEEE
Confidence 76665543
No 158
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.45 E-value=4.3e-13 Score=77.43 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCcEEEEEEeccC--CCCceEEEEEcCceeeeccce--eEE--eecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 114 QEKVNISCEVDAN--PPDVKFSWTFNNSAETVNVAQ--AHI--LRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 114 g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~~~--~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
|+.+.|.|.+.+. |.+ .+.|.+++......... ... ......+.|.|.+++.+|+|.|.|.|.|..|..+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGV-DFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccE-EEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 6789999999998 555 99999876543211110 001 1112356799999999999999999999999887766
Q ss_pred EEEE
Q psy10918 188 VFHI 191 (207)
Q Consensus 188 ~~~v 191 (207)
.+.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 5543
No 159
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.45 E-value=4.5e-13 Score=76.83 Aligned_cols=68 Identities=18% Similarity=0.391 Sum_probs=55.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+....+..|+++.|.|.+.+ +.+ .+.|++|+.++..... +....++.|.|.+++..|+|.|.|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLA-RVVWKFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCC-eEEEEECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 45667889999999999764 445 8999999999876432 34455678999999999999999999854
No 160
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.45 E-value=6.8e-13 Score=75.46 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
+....+..|+.+.|.|.+.|.|.|..|.|+++|..+... .....+.|.|..+ .|.|.|.|.|+|..|...
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-------~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-------PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-------CCCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 344567899999999999999987569999998765320 1122346888766 478999999999999653
No 161
>KOG3515|consensus
Probab=99.45 E-value=1.2e-12 Score=100.53 Aligned_cols=170 Identities=25% Similarity=0.410 Sum_probs=118.9
Q ss_pred eeeeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 6 LTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 6 ~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.....+.. .+..|++|.|.|.+.++|++..+.|++.++.+. ..+......+|......++..+.|.|++.|..+.
T Consensus 9 v~~~~~l~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 9 VCESSSLTV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH---GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred cccCCCCCh-hhccCCcceeeeecCCCCCCcceEEEecCcccc---cccccccCCceeeecchhhhhhhhhhhhcccccC
Confidence 333444445 788999999999999988877999999887766 2334455677888888888899999999998777
Q ss_pred CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccce----eEEeec---CceE
Q psy10918 86 GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQ----AHILRS---GTLS 157 (207)
Q Consensus 86 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~----~~~~~~---~~~~ 157 (207)
.......+.+.++|.+...... .....+..+.+.|.+.. ..+...+.|..++......... ...... ...+
T Consensus 85 ~~~~~~~l~v~~~pa~~~~~~e-~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s 163 (741)
T KOG3515|consen 85 PSRCPMILDVDYPPACLPELGE-IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPS 163 (741)
T ss_pred ceecceeeccccCccccccccc-hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecccc
Confidence 6666777888888765543322 22346778899995543 3333499999987654332210 000111 1134
Q ss_pred EEEEecCCCCCCeEEEEEEecCC
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.+.+...+..+.|.|+|.|.|..
T Consensus 164 ~l~~~v~Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 164 LLKQTVSRKADNGNYTCPANNRN 186 (741)
T ss_pred ceeeEEEEecCCceeEccccccc
Confidence 57777888999999999999953
No 162
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.45 E-value=1.9e-12 Score=74.52 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=54.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccc---eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVA---QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
|+.+.|.|.+.+.|.+ .+.|++.++....... ..........+.|.|.+++.+|+|.|.|.|+|..+....+..+.
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 6889999999998776 9999987654221111 11111222356899999999999999999999876333344454
Q ss_pred Eee
Q psy10918 191 IVS 193 (207)
Q Consensus 191 v~~ 193 (207)
|.+
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 444
No 163
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.44 E-value=1.5e-12 Score=73.62 Aligned_cols=71 Identities=20% Similarity=0.409 Sum_probs=55.4
Q ss_pred EEEeEeccCCCCcEEEEEECCccccccccCCeE--ecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 24 YFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 24 ~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.|.|.+.+.|.+ .+.|++++..+.......+. ..+..|.|.+++.+|.|.|.|.+.|..|.. ...+.|.|.
T Consensus 2 ~L~C~v~g~P~p-~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLP-RLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCC-EEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 689999999988 99999999887653322222 223569999999999999999999998877 446666664
No 164
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.44 E-value=1.1e-12 Score=74.16 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=49.2
Q ss_pred CceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 106 QRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
+....+.+|+.++|.|.+.+.|.+..+.|++++..+. .....|.|.++ .+|+|.|.|.|.|.
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-----------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-----------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee-----------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 3444678999999999999987655899999987642 11235788888 99999999999985
No 165
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.44 E-value=7.7e-13 Score=74.94 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=47.1
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC----CCCeEEEEEEecCCCCCc
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE----LDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~n~~g~~~ 184 (207)
+.|.|.+.|.|.| .++|++++..+..... ..+........|.|..++. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~l~~~~~-~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTHFDPEKD-PRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCCCC-CCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 4789999999998 9999999876543221 1222222233577777643 689999999999999653
No 166
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.43 E-value=1.1e-12 Score=75.30 Aligned_cols=73 Identities=26% Similarity=0.451 Sum_probs=52.8
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCc---cc-ccccc---CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNK---TL-HHNIA---QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~---~~-~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
|+++.|.|.+.+.|.+ .+.|++++. .+ ..... .........|.|.+++.+|+|.|.|.+.|..|.. ...+.
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFP 78 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEE
Confidence 7889999999999988 999999742 11 11110 1112234679999999999999999999998875 44555
Q ss_pred EE
Q psy10918 93 LN 94 (207)
Q Consensus 93 l~ 94 (207)
|.
T Consensus 79 l~ 80 (81)
T cd05765 79 LS 80 (81)
T ss_pred Ee
Confidence 54
No 167
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.43 E-value=1.4e-12 Score=74.37 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=46.2
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeecc-----ceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNV-----AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.|.+.|.|.| .+.|++++....... ...++.... ...|.|.++..+|+|.|.|.|.|..|..
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEec-CCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 4799999999998 999999654321100 111111111 2358899999999999999999999976
No 168
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.41 E-value=2.3e-12 Score=75.55 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=49.6
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC-CCCCeEEEEEEecCCCCCc
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~~ 184 (207)
+..+.|.|.+.|.|.| .+.|++++..+..... ++...+ ..|.|.++. .+|+|.|.|.|+|..|...
T Consensus 19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~i~~~~~--~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 85 (93)
T cd05849 19 EGKVSVNCRARANPFP-IYKWRKNNLDIDLTND--RYSMVG--GNLVINNPDKYKDAGRYVCIVSNIYGKVR 85 (93)
T ss_pred CCeEEEeCcCccCCCC-EEEEEECCEEccCCCC--eEEEEC--CEEEECcCCcCCCCEEEEEEEEeCcceEE
Confidence 4579999999999998 9999999876532222 222222 248888775 6899999999999999763
No 169
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.41 E-value=5e-12 Score=73.21 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=56.9
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
+..|+.+.|.|.+.+.|.+ .+.|++++..+.................|.|.++..+|.|.|.|.+.|..|....+..+
T Consensus 6 ~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRP-TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred ecCCCcEEEEEEcCCCCCC-eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 4578999999999998876 99999987664322111111112334568899999999999999999999876555444
No 170
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.41 E-value=3.1e-12 Score=73.62 Aligned_cols=76 Identities=13% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccC--Ce----EecCCeEEEEecCCCCCeeeEEEEeeeCC-CCccceEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ--GI----IMTNQSLVLQRVNRQSAGNYTCVGFNIEG-DGESNAFF 92 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~--~~----~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~-~~~~~~~~ 92 (207)
|++++|.|.+.+.+.+ .+.|++.+......... .. ......|.|.+++.+|+|.|.|.+.|..+ .....++.
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999988776 99999877543211100 00 11235799999999999999999987654 23355666
Q ss_pred EEEE
Q psy10918 93 LNVM 96 (207)
Q Consensus 93 l~v~ 96 (207)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 6664
No 171
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.40 E-value=1.3e-12 Score=73.76 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=49.8
Q ss_pred EEEEeEecc-CCCCcEEEEEECCccccccccCC---eE--ecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG---II--MTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~---~~--~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.|.|.+.+ .|.+ .+.|++++..+....... +. .....|.|.+++.+|+|.|.|.+.|..|..
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 478999999 7877 999999998887543222 11 123579999999999999999999998865
No 172
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.40 E-value=1.9e-12 Score=75.35 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=55.2
Q ss_pred cCCCcccCCCcEEEEeEe-ccCCCCcEEEEEECCccccc-cccCCeE-ecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDI-VAVPPVYKVEWRHNNKTLHH-NIAQGII-MTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
.....+.+|+.+.|.|.. .+.|.+ .+.|++++.++.. .+...+. ..++.|.|.+++..|+|.|.|.+.|....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p-~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDL-SYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCC-EEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 345567889999999987 556776 9999999876421 1222233 33689999999999999999999987543
No 173
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.39 E-value=2.7e-12 Score=72.53 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=45.7
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC----CCCCeEEEEEEecCCCCCc
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS----ELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~C~~~n~~g~~~ 184 (207)
+.|.|.+.|.|.| .+.|++++..+...... .+........|.|..+. .+|+|.|.|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKFFNVAKDP-RVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEEccCcCCC-cEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4799999999998 99999998754322211 12222222357777653 2469999999999999653
No 174
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.38 E-value=2.5e-12 Score=72.69 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=45.1
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCC----CCCeEEEEEEecCCCCCc
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE----LDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~n~~g~~~ 184 (207)
+.|.|.+.|.|.| ++.|++++..+...... ..........|.|..+.. .|.|.|+|.|.|..|...
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~~~~~-~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTHFDIDKDP-KVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCcCCC-CEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 4799999999998 99999998765322211 121112222466665543 378999999999999754
No 175
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.38 E-value=3.1e-12 Score=74.63 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=54.3
Q ss_pred CcccCCCcEEEEeEeccC-----CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 15 DHIKEDSDVYFDCDIVAV-----PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~-----~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.+.+|.+..|.|...+. +.+ .+.|+|++.++.... .....++.|.|.++..+|+|.|+|.+.|..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~~i~~~~--~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCKLLEGDR--KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCC-cEEEeECCEECCCCc--cEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 456789999999987432 345 899999999887533 222367889999999999999999999876654
No 176
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.38 E-value=3.4e-12 Score=73.85 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=55.9
Q ss_pred cCCCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+....+.+|++++|.|.+.+ .+.+ .+.|++++..+... ....++.|.|.+++.+|+|.|.|.+.|..|..
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAY-TLVWTRVGGGLPSR----AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCcCCCc----ccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 45667889999999999865 5555 99999998765432 22335789999999999999999999988765
No 177
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.37 E-value=8.7e-12 Score=72.18 Aligned_cols=77 Identities=21% Similarity=0.387 Sum_probs=56.9
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe---EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI---IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~ 92 (207)
.+..|+++.|.|.+.+.+.+ .+.|++++..+........ ......|.|.+++.+|+|.|.|.+.|..|.. ..++.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRP-TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYK 82 (85)
T ss_pred EecCCCcEEEEEEcCCCCCC-eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEE
Confidence 45679999999999988877 8999999887754321111 1112369999999999999999999887764 43554
Q ss_pred EE
Q psy10918 93 LN 94 (207)
Q Consensus 93 l~ 94 (207)
|+
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 44
No 178
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.36 E-value=5.8e-12 Score=73.92 Aligned_cols=68 Identities=16% Similarity=0.335 Sum_probs=50.5
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc-cc-----cCCeE--e---cCCeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH-NI-----AQGII--M---TNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~-~~-----~~~~~--~---~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+..+.+|+++.|.|.+.+.+.+ .+.|++++..+.. +. ..++. . ...+|.|.+++.+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 34567899999999999998877 8999998754311 00 11111 1 124799999999999999999986
No 179
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.36 E-value=3e-12 Score=73.88 Aligned_cols=74 Identities=16% Similarity=0.329 Sum_probs=52.9
Q ss_pred CCcEEEEeEeccC--CCCcEEEEEECCcccccccc----CC---eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 20 DSDVYFDCDIVAV--PPVYKVEWRHNNKTLHHNIA----QG---IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 20 g~~v~l~C~~~~~--~~~~~i~W~~~~~~~~~~~~----~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
|+++.|.|.+.+. +.+ .+.|++++..+..... .. ......+|.|.+++..|+|.|.|.+.|..+.. ..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGV-DFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccE-EEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEE
Confidence 7889999999988 665 9999987765432110 00 01123579999999999999999999988765 435
Q ss_pred EEEEE
Q psy10918 91 FFLNV 95 (207)
Q Consensus 91 ~~l~v 95 (207)
..|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 54544
No 180
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.36 E-value=8.8e-12 Score=67.65 Aligned_cols=62 Identities=24% Similarity=0.499 Sum_probs=49.7
Q ss_pred CCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+|++++|.|.+.+.+.+ .+.|++++..+.. ..........|.|.+++..|+|.|.|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKPLPE--SNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEECCC--CCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 48899999998777766 8999999877762 22333445689999999999999999998754
No 181
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.33 E-value=1.2e-11 Score=72.48 Aligned_cols=67 Identities=24% Similarity=0.449 Sum_probs=48.4
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCC-CCCCeEEEEEEecCCCCC
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNS-ELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~ 183 (207)
.+..+.|.|.+.|.|.+ .+.|++++..+..... ..+.... ..|.|.++. .+|+|.|+|.|.|..|..
T Consensus 18 ~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~~~~~-~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~N~~G~~ 85 (91)
T cd04967 18 DEGKVSLNCRARGSPPP-TYRWLMNGTEIDDEPD-SRYSLVG--GNLVISNPSKAKDAGRYQCLASNIVGTV 85 (91)
T ss_pred CCCEEEEEEeeeEcCCC-EEEEEECCEECCCCCC-CCEEEEC--CEEEEecCCccCCCEEEEEEEEcCCCEE
Confidence 34679999999999887 9999999876532211 1121111 247787776 489999999999999865
No 182
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.33 E-value=8.1e-12 Score=70.64 Aligned_cols=63 Identities=19% Similarity=0.457 Sum_probs=46.8
Q ss_pred EEEEeEecc-CCCCcEEEEEECCcccccccc--CCeE--e--cCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGII--M--TNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~--~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.|.|.+.+ .|.+ .+.|++++..+..... .++. . ....|.|.+++..|+|.|.|.+.|..|..
T Consensus 1 ~~L~C~a~~~~p~~-~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSL-RFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCC-ceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 479999865 4555 9999999988864221 1111 1 23569999999999999999999988755
No 183
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.33 E-value=1.1e-11 Score=71.74 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=55.2
Q ss_pred ceeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCcc
Q psy10918 107 RVLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 185 (207)
....+..|+.++|.|.+.+ .|.+ .+.|++++..+... .. .....|.|.+++.+|+|.|.|.|.|..|....
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~~~~~-----~~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAY-TLVWTRVGGGLPSR-----AM--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCcCCCc-----cc--ccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 3345678999999999975 4554 99999987653211 11 11235999999999999999999999998766
Q ss_pred ceE
Q psy10918 186 PCV 188 (207)
Q Consensus 186 ~~~ 188 (207)
++.
T Consensus 81 ~~~ 83 (85)
T cd05754 81 TAT 83 (85)
T ss_pred EEE
Confidence 544
No 184
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.31 E-value=2.7e-11 Score=70.54 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=51.9
Q ss_pred eeeeeeCCcEEEEEEecc-CCCCceEEEEEcCceeeeccc-eeEEee-cCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 108 VLGVARQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVA-QAHILR-SGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~-~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
...+.+|+.+.|.|.... .|++ .+.|++++.......+ +..+.. +| .|.|.+++.+|+|.|.|.|+|.....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p-~~~W~k~~~~~~~~~d~r~~~~~~~G---~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDL-SYRWLLNEFPNFIPEDGRRFVSQTNG---NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCC-EEEEEECCcccccccCCCeEEeCCCC---cEEEeecCHhhCceeEEEEEecccCC
Confidence 345778999999997665 4655 9999999765322221 122222 33 48999999999999999999987544
No 185
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.31 E-value=2e-11 Score=71.37 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=53.5
Q ss_pred CCCcccCCCcEEEEeEecc----------CCCCcEEEEEECCccccccc-----cCCeEecCCeEEEEecCCCCCeeeEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVA----------VPPVYKVEWRHNNKTLHHNI-----AQGIIMTNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~----------~~~~~~i~W~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~g~Y~C 77 (207)
....+.+|+.+.|.|.... .....++.|+|++..+.... ..++...+..|.|.++..+|+|.|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 3456789999999999621 11122799999975554422 13566678899999999999999999
Q ss_pred EEeeeCC
Q psy10918 78 VGFNIEG 84 (207)
Q Consensus 78 ~~~~~~~ 84 (207)
.+.|...
T Consensus 88 ~~rN~t~ 94 (104)
T cd05896 88 VLRNSTY 94 (104)
T ss_pred EECCCCc
Confidence 9997654
No 186
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.31 E-value=2.3e-11 Score=82.75 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=55.5
Q ss_pred eeeeecCCCcccCCCcEEEEeEecc-----CCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 7 TLGRSLNPDHIKEDSDVYFDCDIVA-----VPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 7 ~~~~~~~~~~v~~g~~v~l~C~~~~-----~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+.....+..+.+|+++.|.|.+.+ .+.+ .++|+|++.++...........+++|.|.+++.+|+|.|+|.+..
T Consensus 131 ~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 131 TFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDY-TLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred EEecCCccceEecCCCEEEEeeCCCCccccCCCc-eEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEE
Confidence 3333334456678999999999753 3455 999999999887543322223456899999999999999999986
Q ss_pred e
Q psy10918 82 I 82 (207)
Q Consensus 82 ~ 82 (207)
.
T Consensus 210 ~ 210 (227)
T PHA02826 210 N 210 (227)
T ss_pred e
Confidence 5
No 187
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.30 E-value=2e-11 Score=71.88 Aligned_cols=69 Identities=14% Similarity=0.337 Sum_probs=49.4
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--------cccccccCCeEe---cCCeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--------TLHHNIAQGIIM---TNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--------~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.+..+.+|+++.|.|.+.+.+.+ .+.|++.+. ......+..... ...+|.|.+++.+|+|.|.|.+.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 45678899999999999988877 899986322 111111111111 224799999999999999999986
Q ss_pred e
Q psy10918 82 I 82 (207)
Q Consensus 82 ~ 82 (207)
.
T Consensus 84 ~ 84 (95)
T cd07701 84 M 84 (95)
T ss_pred e
Confidence 4
No 188
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.29 E-value=2.4e-11 Score=70.62 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCceeeeeeCCcEEEEEE-eccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCe-EEEEEEecCCCC
Q psy10918 105 QQRVLGVARQEKVNISCE-VDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG-TLICWGSNKIGH 182 (207)
Q Consensus 105 ~~~~~~~~~g~~~~l~C~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~n~~g~ 182 (207)
......+.+|+.+.|.|. ..|.|.| .+.|+.++........+..+..+| .|.|.++..+|+| .|.|.|.|....
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEccccc
Confidence 344556789999999997 6788887 999997654422222222233333 4899999999999 799999997643
No 189
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.29 E-value=7.1e-11 Score=68.89 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=53.9
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
...+..|+.+.|.|.+.+ |.+ .+.|++++..+..... ..++.... ..|.|.+++.+|+|.|.|.|.|..+ .+..
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~-~~~~ 79 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGF-KQTL 79 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCcc-ceeE
Confidence 345678999999999976 665 9999999876443210 11222222 1388999999999999999997653 2233
Q ss_pred eEEEEe
Q psy10918 187 CVFHIV 192 (207)
Q Consensus 187 ~~~~v~ 192 (207)
+.+.|.
T Consensus 80 ~~~~l~ 85 (89)
T cd04979 80 ATYSLN 85 (89)
T ss_pred eEEEEE
Confidence 334443
No 190
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.29 E-value=6.1e-11 Score=69.15 Aligned_cols=78 Identities=22% Similarity=0.435 Sum_probs=53.0
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCc--ccccc--ccCCeEecCCeEEEEecCCCCCeeeEEEEee-eCCCCccce
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLHHN--IAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN-IEGDGESNA 90 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~-~~~~~~~~~ 90 (207)
.+.+|+++.|.|.. ..|.+ .+.||+... ..... ...+.....+.|.|.+++.+|+|.|.|.+.+ ..+.. ...
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~ 83 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAK 83 (91)
T ss_pred EEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-EEE
Confidence 45789999999996 46666 899998432 21110 1223344557799999999999999999984 44323 335
Q ss_pred EEEEEE
Q psy10918 91 FFLNVM 96 (207)
Q Consensus 91 ~~l~v~ 96 (207)
++|+|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 566665
No 191
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.29 E-value=8.3e-11 Score=69.24 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=54.3
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceee-------eccceeEEee-cCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAET-------VNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-------~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
....+.+|+.+.|.|.+.+.|.+ .+.|++.+.... ....+..... ......|.|.+++.+|+|.|.|.+.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 34467899999999999998887 999986332111 0111222211 23446799999999999999999998
Q ss_pred CCCCCccceEE
Q psy10918 179 KIGHQRVPCVF 189 (207)
Q Consensus 179 ~~g~~~~~~~~ 189 (207)
..+. +..+.|
T Consensus 84 ~~~~-~~~~~l 93 (95)
T cd07701 84 MPVK-TSKAYL 93 (95)
T ss_pred ecCc-cEEEEE
Confidence 4333 444444
No 192
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.29 E-value=5.6e-11 Score=68.23 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=51.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
....+..|+.+.|.|.+.+ +.+ ++.|+++|..+........+ .++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLA-RVVWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCC-eEEEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 3456789999999999864 555 99999999876543222222 222 38899999999999999999853
No 193
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.28 E-value=1.8e-11 Score=71.18 Aligned_cols=71 Identities=17% Similarity=0.342 Sum_probs=55.9
Q ss_pred cCCCcccCCCcEEEEeE-eccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCe-eeEEEEeeeC
Q psy10918 12 LNPDHIKEDSDVYFDCD-IVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG-NYTCVGFNIE 83 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~ 83 (207)
.....+.+|+.+.|.|. ..+.|.+ .|.|++++...-..+.+.....++.|.|.+++..|.| .|.|.+.+..
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 46678899999999997 5888888 9999987655333333333344689999999999999 8999999764
No 194
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.28 E-value=5e-11 Score=66.98 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=47.7
Q ss_pred EEEEeEeccCCCCcEEEEEECCcccccccc----CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIA----QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
+.|+|.+.+..++..|+||+++.++..... .......++|.|.....+|.+.|+|++.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999966544449999999999865321 1111233469999999999999999999987654
No 195
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.28 E-value=5.8e-11 Score=68.58 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=54.3
Q ss_pred CCcEEEEEEeccCCC-CceEEEEEcCceeeecc--ceeE---EeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 114 QEKVNISCEVDANPP-DVKFSWTFNNSAETVNV--AQAH---ILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 114 g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--~~~~---~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
|+.+.|.|.+.+.+. .+.+.|...++...... ...+ .......+.|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999987643 35889988775432111 1000 11122356899999999999999999999988776665
Q ss_pred EEEE
Q psy10918 188 VFHI 191 (207)
Q Consensus 188 ~~~v 191 (207)
.+.|
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 5554
No 196
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.27 E-value=8.5e-11 Score=69.01 Aligned_cols=75 Identities=16% Similarity=0.349 Sum_probs=57.2
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEe--------cCCeEEEEecCCCC-CeeeEEEEeee
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--------TNQSLVLQRVNRQS-AGNYTCVGFNI 82 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d-~g~Y~C~~~~~ 82 (207)
.....+.+|+++.|.|.+.+.|.|..|.|..++..+......++.. ..+.|.|.++...| .|.|.|.+.|.
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 3455678899999999998888877899999887765432222221 12469999998766 79999999999
Q ss_pred CCCC
Q psy10918 83 EGDG 86 (207)
Q Consensus 83 ~~~~ 86 (207)
+|..
T Consensus 88 ~G~d 91 (98)
T cd05898 88 FGSG 91 (98)
T ss_pred Cccc
Confidence 9977
No 197
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.27 E-value=1.5e-11 Score=67.18 Aligned_cols=59 Identities=29% Similarity=0.579 Sum_probs=44.3
Q ss_pred CCcEEEEeEe-ccCCCCcEEEEEECCccccccccCCeEecCCe----EEEEecCCCCCeeeEEEE
Q psy10918 20 DSDVYFDCDI-VAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS----LVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 20 g~~v~l~C~~-~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~----l~i~~~~~~d~g~Y~C~~ 79 (207)
|++++|.|.+ ...+.. .+.|++++..............+.. |.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPT-TVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTS-EEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCc-EEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 555555 9999999887665332222222232 999999999999999986
No 198
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.27 E-value=2e-10 Score=67.46 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=50.9
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeee-------ccceeEE-eecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV-------NVAQAHI-LRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..+..|+.+.|.|.+.+.|.+ .+.|++++..... ...+..+ ........|.|.++..+|+|.|+|.+..
T Consensus 7 ~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 7 ETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 457799999999999998887 9999987753211 1111111 1122346799999999999999999998
No 199
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.26 E-value=1.5e-11 Score=70.32 Aligned_cols=72 Identities=26% Similarity=0.577 Sum_probs=54.9
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
..+.+|+++.|.|.+.+.+.. .+.|++++..+... ...+.+.+++.+|.|.|.|.+.+..+...+..+.|+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPP-QVQWYKNGSPINSS--------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSS-EEEEEETTEEEEEE--------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccce-eeeeeeeeeeeeee--------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 568899999999999988776 99999988766532 122667788899999999999886554445555554
Q ss_pred E
Q psy10918 95 V 95 (207)
Q Consensus 95 v 95 (207)
|
T Consensus 80 V 80 (80)
T PF13895_consen 80 V 80 (80)
T ss_dssp E
T ss_pred C
Confidence 3
No 200
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.26 E-value=4.4e-11 Score=68.59 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=50.2
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
.+.+|+.++|.|.+.+..+...+.|++++..+.. ......|.|.+++.+|+|.|+|.+.|..+..
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~---------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY---------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc---------cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 4679999999999865444348999998865321 1123458999999999999999999988744
No 201
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.25 E-value=4.8e-11 Score=69.61 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=53.4
Q ss_pred eeeeCCcEEEEEEeccC-----CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 110 GVARQEKVNISCEVDAN-----PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+..|+...|.|...+. |.| .+.|++++..+... ...+. ....|.|.++..+|+|.|+|.|.|..+...
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~~i~~~--~~~~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCKLLEGD--RKRFV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCC-cEEEeECCEECCCC--ccEEe---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 45688999999987643 344 99999999775422 22222 223599999999999999999999987665
Q ss_pred cceE
Q psy10918 185 VPCV 188 (207)
Q Consensus 185 ~~~~ 188 (207)
..+.
T Consensus 80 ~~~t 83 (92)
T cd05757 80 YNVT 83 (92)
T ss_pred EEEE
Confidence 4433
No 202
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.25 E-value=7.8e-11 Score=68.88 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=53.7
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC--CCCccceE
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE--GDGESNAF 91 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~--~~~~~~~~ 91 (207)
...|.+|++|+|.|.... +.. .+.|+++|....... .........|.|.+++.+|+|.|+|...+.. .+..+..+
T Consensus 10 ~~vV~~G~~VtL~C~~~~-~~~-~f~l~k~g~~~~~~~-~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~l 86 (91)
T cd05751 10 SSVVPLGKPVTLRCQGPY-GAV-EYRLYREGSTFAVKK-PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPL 86 (91)
T ss_pred CCccCCCCcEEEEEecCC-CCC-EEEEEECCCCccccc-cCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcE
Confidence 356789999999998763 334 899999987544211 1111223569999999999999999998752 12334445
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 87 el~V 90 (91)
T cd05751 87 ELVV 90 (91)
T ss_pred EEEe
Confidence 4443
No 203
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.22 E-value=9.3e-11 Score=63.53 Aligned_cols=63 Identities=19% Similarity=0.393 Sum_probs=47.7
Q ss_pred eCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+|+.+.|.|.+.+.+.+ .+.|++++..+. ..... ......|.|.++...|+|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~---~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKPLP---ESNRL--SASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEECC---CCCEE--ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 37889999998877776 999999877644 11111 12234689999999999999999998764
No 204
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.22 E-value=9.7e-11 Score=68.28 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=51.3
Q ss_pred CcccCCCcEEEEeEe-cc----CCCCcEEEEEECCccccccccCCeE-ecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 15 DHIKEDSDVYFDCDI-VA----VPPVYKVEWRHNNKTLHHNIAQGII-MTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~-~~----~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.+..|.+..|.|.- .+ .+.+ .+.|||++.++......... .....|.|.++..+|+|.|+|.+.+..+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCC-cEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 345678999999973 22 3444 89999999988753322222 23457999999999999999999987543
No 205
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.22 E-value=1.6e-10 Score=66.73 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=51.8
Q ss_pred CCcEEEEeEeccCCC-CcEEEEEECCcccccc---cc--CCe---EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccce
Q psy10918 20 DSDVYFDCDIVAVPP-VYKVEWRHNNKTLHHN---IA--QGI---IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA 90 (207)
Q Consensus 20 g~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~~---~~--~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 90 (207)
|+++.|.|.+.+.+. ...+.|.+.+...... .. ... ....+.|.|.+++..|+|.|+|.+.|..+.. ...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence 788999999976432 2388998877543210 10 000 1123579999999999999999999887755 445
Q ss_pred EEEEEE
Q psy10918 91 FFLNVM 96 (207)
Q Consensus 91 ~~l~v~ 96 (207)
..|.|+
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 556664
No 206
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.21 E-value=1.4e-10 Score=63.30 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=42.8
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCc--eEEEEEecCCCCCCeEEEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT--LSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~~ 176 (207)
|+.+.|.|.+...+++..+.|+++++........ ....... ...|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT-NRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE-EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCccee-EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999333444599999998764432211 1112222 123999999999999999986
No 207
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.18 E-value=4.1e-10 Score=64.89 Aligned_cols=79 Identities=27% Similarity=0.502 Sum_probs=56.0
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEEC-CccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHN-NKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
..+..|+++.|.|.+.+.+.+ .+.|+++ +..+............ ..|.|.+++..|+|.|.|.+.+..+.... .+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~-~~ 81 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS-TT 81 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE-EE
Confidence 456789999999999887555 9999998 7666522222222222 57999999999999999999966655433 24
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 4443
No 208
>smart00409 IG Immunoglobulin.
Probab=99.18 E-value=4.1e-10 Score=64.89 Aligned_cols=79 Identities=27% Similarity=0.502 Sum_probs=56.0
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEEC-CccccccccCCeEecC--CeEEEEecCCCCCeeeEEEEeeeCCCCccceE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHN-NKTLHHNIAQGIIMTN--QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 91 (207)
..+..|+++.|.|.+.+.+.+ .+.|+++ +..+............ ..|.|.+++..|+|.|.|.+.+..+.... .+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~-~~ 81 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS-TT 81 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE-EE
Confidence 456789999999999887555 9999998 7666522222222222 57999999999999999999966655433 24
Q ss_pred EEEE
Q psy10918 92 FLNV 95 (207)
Q Consensus 92 ~l~v 95 (207)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 4443
No 209
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.15 E-value=5.4e-10 Score=65.24 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=61.5
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecC-------CeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN-------QSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
....|.+|+++.|.|.+.++|.+..+.|.+++..+...........+ +.|+|..++.+|.|.|+|.+.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 34568899999999999999998459999988766432221122211 35999999999999999999988775
Q ss_pred CccceEEEEEE
Q psy10918 86 GESNAFFLNVM 96 (207)
Q Consensus 86 ~~~~~~~l~v~ 96 (207)
. +.++.|.|+
T Consensus 91 ~-s~tF~l~v~ 100 (101)
T cd05860 91 A-SVTFNVYVN 100 (101)
T ss_pred E-EEEEEEEEe
Confidence 5 445555543
No 210
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.15 E-value=1.5e-09 Score=63.40 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=61.1
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec-C---ceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-G---TLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
....+.+|+.+.|.|.+.++|+|..+.|.+++..+............ . -.+.|.+..++.+++|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 34567899999999999999998459999987654322221111111 1 2467999999999999999999998887
Q ss_pred CccceEEE
Q psy10918 183 QRVPCVFH 190 (207)
Q Consensus 183 ~~~~~~~~ 190 (207)
.+.++.+.
T Consensus 91 ~s~tF~l~ 98 (101)
T cd05860 91 ASVTFNVY 98 (101)
T ss_pred EEEEEEEE
Confidence 75554443
No 211
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.14 E-value=1.4e-10 Score=67.74 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=46.1
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccc-cccc-----------cCC--eEe---c--CCeEEEEecCCCCCeeeEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL-HHNI-----------AQG--IIM---T--NQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~-~~~~-----------~~~--~~~---~--~~~l~i~~~~~~d~g~Y~C 77 (207)
+.+|++++|.|.+.+.+.+ .+.|++++... .... ..+ ... . ...|+|.+++.+|+|.|+|
T Consensus 4 ~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 4 GKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred eeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 5679999999999887766 89999765321 1100 000 011 1 1359999999999999999
Q ss_pred EEeeeC
Q psy10918 78 VGFNIE 83 (207)
Q Consensus 78 ~~~~~~ 83 (207)
.+.+..
T Consensus 83 ~v~~~~ 88 (94)
T cd07690 83 EVEDKK 88 (94)
T ss_pred EECCcc
Confidence 998654
No 212
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.13 E-value=5.1e-10 Score=63.82 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=50.8
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
...+.+|+++.|.|...+.. . .+.|++++..+..+ .+.......|.|..++..|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~~-A-~v~W~~ng~~l~~~--~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSNL-A-SPVWLFNGTPLNAQ--FSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCCC-c-cEEEEECCcccCCC--cceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 45678899999999987764 4 89999999988653 2344445568899999999999999986
No 213
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.12 E-value=5.8e-10 Score=65.12 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=50.1
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeecc-------------ceeEEee---cCceEEEEEecCCCCCCeEEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNV-------------AQAHILR---SGTLSVVAYSPNSELDYGTLI 173 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-------------~~~~~~~---~~~~~~l~i~~~~~~~~g~y~ 173 (207)
.+..|+.++|.|...+.+.+ .+.|++++....... ++..... ......|.|.+++.+|+|.|.
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 35689999999999988776 999997654321110 0111111 233456999999999999999
Q ss_pred EEEecCCC
Q psy10918 174 CWGSNKIG 181 (207)
Q Consensus 174 C~~~n~~g 181 (207)
|.+.|..+
T Consensus 82 C~v~~~~~ 89 (94)
T cd07690 82 CEVEDKKE 89 (94)
T ss_pred EEECCccc
Confidence 99998654
No 214
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.12 E-value=1.7e-09 Score=61.99 Aligned_cols=70 Identities=16% Similarity=0.302 Sum_probs=47.3
Q ss_pred cEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCc----eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 116 KVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGT----LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 116 ~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
.+.|.|.+.+. |.+ .+.|++++..+...........++. .+.|.+.....+|.|.|+|.|.|........
T Consensus 1 ~~~L~C~v~g~~P~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~ 75 (82)
T cd05759 1 PYNLTCRARGAKPAA-EIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKE 75 (82)
T ss_pred CEEEEEEEeCccCCC-EEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcE
Confidence 36899999875 665 9999999876542221122222322 3467787777888999999999987544333
No 215
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.10 E-value=9e-10 Score=65.03 Aligned_cols=70 Identities=16% Similarity=0.365 Sum_probs=48.4
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccc-c-cc----ccCCeEe-----cCCeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL-H-HN----IAQGIIM-----TNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~-~-~~----~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
....+.+|++++|.|.+.+.+.+ .+.|++.+..+ . .. ...++.. ....|.|.+++.+|+|.|+|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 45567899999999999877766 89998633211 0 00 0112211 224699999999999999999985
Q ss_pred eC
Q psy10918 82 IE 83 (207)
Q Consensus 82 ~~ 83 (207)
..
T Consensus 84 ~~ 85 (95)
T cd05717 84 MP 85 (95)
T ss_pred CC
Confidence 43
No 216
>smart00409 IG Immunoglobulin.
Probab=99.10 E-value=4.4e-09 Score=60.51 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=55.4
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEc-CceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFN-NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
.+..|+.+.|.|.+.+.+.+ .+.|+++ +..+. ...............|.|.+++..|+|.|.|.+.+..+.......
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 5 TVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45689999999999988565 9999998 54432 112222333333567999999999999999999987776544433
No 217
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.10 E-value=4.4e-09 Score=60.51 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=55.4
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEc-CceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFN-NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 188 (207)
.+..|+.+.|.|.+.+.+.+ .+.|+++ +..+. ...............|.|.+++..|+|.|.|.+.+..+.......
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 5 TVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45689999999999988565 9999998 54432 112222333333567999999999999999999987776544433
No 218
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.10 E-value=1.6e-09 Score=64.68 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=50.0
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccc------------------cccCCeEecCCeEEEEecCCCCCe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH------------------NIAQGIIMTNQSLVLQRVNRQSAG 73 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~------------------~~~~~~~~~~~~l~i~~~~~~d~g 73 (207)
+.+..+.+|+++.|.|....... ..+.|||....... ...+.....+++|.|.+++..|+|
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p~~~-~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLPENL-LAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred ccCCcccCCCCEEEEecCCCCCc-eEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 44556788999999998643332 38999996321100 011222344678999999999999
Q ss_pred eeEEEEeeeCCC
Q psy10918 74 NYTCVGFNIEGD 85 (207)
Q Consensus 74 ~Y~C~~~~~~~~ 85 (207)
.|.|.+.+....
T Consensus 84 ~Y~~~v~~~~~~ 95 (105)
T cd05774 84 FYTLQTITTNFQ 95 (105)
T ss_pred EEEEEEEeCCcc
Confidence 999999876543
No 219
>PHA03376 BARF1; Provisional
Probab=99.09 E-value=1.1e-08 Score=65.68 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCcccCCCcEEEEeEecc--CCCCcEEEEEECCc----cccc-c---------ccCC-eE----ecCCeEEEEecCCCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNNK----TLHH-N---------IAQG-II----MTNQSLVLQRVNRQSA 72 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~~----~~~~-~---------~~~~-~~----~~~~~l~i~~~~~~d~ 72 (207)
+.....|+++.|+|.... ......|.|+|.+. .+-. . ..+. .. ..+-+|.|.+++..|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 456678999999998752 22234899999532 1110 0 0011 11 1234699999999999
Q ss_pred eeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCcee
Q psy10918 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAE 141 (207)
Q Consensus 73 g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~ 141 (207)
|.|+|.++........ .-+|.+..+.... ..........-.-..+.|.+.|+|.| ++.|..+.+..
T Consensus 100 GtY~C~fQkge~~~~k-~ehLt~V~~~~Ls-v~a~~~dFp~~~~~~i~C~sggfP~P-~~~Wle~~~~~ 165 (221)
T PHA03376 100 GNYLCRMKLGETEVTK-QEHLSVVKPLTLS-VHSERSQFPDFSVLTVTCTVNAFPHP-HVQWLMPEGVE 165 (221)
T ss_pred ceEEEEEEcCCCceee-eeeeeeeecceEE-EEeccccCCCCCeeEEEEecCCcCCc-hheeccccCCC
Confidence 9999999854422211 1122222111100 00000000113456899998888888 99999876543
No 220
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.07 E-value=3.4e-09 Score=59.59 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=47.4
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeec---CceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS---GTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.|...+..|+..|.|++++..+..... ..... ...+.|.+...+.+|++.|+|.|.|+.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS--QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc--cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999987755569999999987643211 11111 123468898999999999999999998754
No 221
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=99.07 E-value=2.4e-09 Score=60.40 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=52.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccC-----CeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-----GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
+.|.|.+.+..++..|+|++++.++...... ......++|.|..-..+|...|+|.+.|+.-........|.|++
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 6899999886555599999999988753211 01112245888777777788999999987654445556677664
No 222
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.05 E-value=1.2e-09 Score=64.12 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=49.0
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCcccccc----------------c-cCCeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----------------I-AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~----------------~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
|++|+|.|........ .+.|+++....... . .+.....+.+|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~~~-~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQ-EITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCE-EEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 7899999998764443 89999966332110 0 0111223467999999999999999999866
Q ss_pred CCCCccceEEE
Q psy10918 83 EGDGESNAFFL 93 (207)
Q Consensus 83 ~~~~~~~~~~l 93 (207)
.+......+.|
T Consensus 80 ~~~~~~~~~~l 90 (92)
T cd05741 80 NGVTENAKFFL 90 (92)
T ss_pred CCcEEEEEEEE
Confidence 55444444444
No 223
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.04 E-value=3.1e-09 Score=61.96 Aligned_cols=79 Identities=11% Similarity=0.283 Sum_probs=50.2
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeeecc-ceeEEeecCceEEEEEecCCCCCCeEEEEEEec-CCCCCcc
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNS--AETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSN-KIGHQRV 185 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n-~~g~~~~ 185 (207)
...+|+.+.|.|.. +.|.+ .+.|++.+. ...... ...+..... ..|.|.++..+|+|.|.|.|.| ..+....
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~ 82 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLIHTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQTLA 82 (91)
T ss_pred EEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEEEec--CeEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence 35689999999996 46665 999998432 211110 111222222 2388999999999999999985 5554444
Q ss_pred ceEEEEe
Q psy10918 186 PCVFHIV 192 (207)
Q Consensus 186 ~~~~~v~ 192 (207)
...|.|+
T Consensus 83 ~~~l~v~ 89 (91)
T cd05871 83 KYTLHVI 89 (91)
T ss_pred EEEEEEe
Confidence 4444443
No 224
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.04 E-value=6.6e-09 Score=61.33 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=49.1
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeee-------ccceeEE-eecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV-------NVAQAHI-LRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
..+.+|+.+.|.|.+.+.+.+ .+.|++.+..... ...+... ........|.|.+++.+|+|.|.|.+.+..
T Consensus 7 ~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 7 VTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred EEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 356789999999999887766 9999863322111 0111122 112234569999999999999999999764
No 225
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.04 E-value=7.9e-10 Score=63.04 Aligned_cols=60 Identities=28% Similarity=0.464 Sum_probs=46.7
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+..|+.+.|.|.+.+.|.. .+.|++++..+... ... +.+.++..+|.|.|+|.+.+..+
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~---------~~~--~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPP-QVQWYKNGSPINSS---------QNG--LFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp EEETTSEEEEEEEEESSSSS-EEEEEETTEEEEEE---------SSE--EEESSEEGGGTEEEEEEEEETTE
T ss_pred EEeCCCcEEEEEEEEcccce-eeeeeeeeeeeeee---------eee--eeeeeeccccCEEEEEEEEeCCC
Confidence 46789999999999988775 99999987654311 111 55677888999999999999654
No 226
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.01 E-value=3.9e-09 Score=60.49 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=43.1
Q ss_pred cEEEEeEecc-CCCCcEEEEEECCccccccccCCeEe-------cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 22 DVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIM-------TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 22 ~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
.+.|.|.+.+ .|.+ .+.|++++.++.......... ..+.|.+.....+|.|.|+|.+.|...
T Consensus 1 ~~~L~C~v~g~~P~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 1 PYNLTCRARGAKPAA-EIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred CEEEEEEEeCccCCC-EEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 3689999987 5666 999999998876432111111 113577777777788999999987653
No 227
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.99 E-value=3.6e-09 Score=61.81 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=47.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCcccc--c----cccCCeE--e-cC--CeEEEEecCCCCCeeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--H----NIAQGII--M-TN--QSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~--~----~~~~~~~--~-~~--~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
++..+.+|+++.|.|.+.+.... .+.|++.+..+. . ..+.++. . .+ .+|+|.+++.+|+|.|+|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 45668899999999999887654 788887664331 0 0112222 1 12 2599999999999999999974
No 228
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.97 E-value=5.6e-09 Score=61.21 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=51.3
Q ss_pred eeeeeCCcEEEEEEecc----------CCCCceEEEEEcCceeeeccc----eeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 109 LGVARQEKVNISCEVDA----------NPPDVKFSWTFNNSAETVNVA----QAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~----------~~~~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
..+.+|+.+.|.|.... ......+.|+|++........ ..++...+. .|.|.++..+|+|.|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence 34678999999998621 222348999998744333221 124444444 48889999999999999
Q ss_pred EEecCCCCCccc
Q psy10918 175 WGSNKIGHQRVP 186 (207)
Q Consensus 175 ~~~n~~g~~~~~ 186 (207)
.+.|...-...+
T Consensus 88 ~~rN~t~C~~~~ 99 (104)
T cd05896 88 VLRNSTYCMKVS 99 (104)
T ss_pred EECCCCcceEEE
Confidence 999976544333
No 229
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.97 E-value=6.5e-09 Score=60.75 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=48.1
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+..|+.++|.|... .+.. .+.|+++|...... .....+....+.|.+++.+|+|.|+|...+.
T Consensus 12 vV~~G~~VtL~C~~~-~~~~-~f~l~k~g~~~~~~----~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 12 VVPLGKPVTLRCQGP-YGAV-EYRLYREGSTFAVK----KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ccCCCCcEEEEEecC-CCCC-EEEEEECCCCcccc----ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 467899999999886 4444 89999988753321 1112344556899999999999999999986
No 230
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.96 E-value=1.4e-08 Score=60.16 Aligned_cols=76 Identities=17% Similarity=0.364 Sum_probs=48.3
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCcc----cc-----cc------ccCCeE-----ecCCeEEEEecCCCCCeeeEEEE
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKT----LH-----HN------IAQGII-----MTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~----~~-----~~------~~~~~~-----~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
|++++|.|..........+.|++.... +. .. ...+.. ....+|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998765444447999985321 00 00 000111 12356999999999999999998
Q ss_pred eeeCCCCccceEEEEE
Q psy10918 80 FNIEGDGESNAFFLNV 95 (207)
Q Consensus 80 ~~~~~~~~~~~~~l~v 95 (207)
...........+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7544333455666665
No 231
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.93 E-value=8e-09 Score=60.29 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=48.8
Q ss_pred eeeCCcEEEEEEe-ccC----CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 111 VARQEKVNISCEV-DAN----PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 111 ~~~g~~~~l~C~~-~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+..|....|.|.- .+. +.+ .+.|+|++..+.... ...........|.|.++..+|+|.|+|.|.+..+..
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~~l~~~~--~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSVLLDKDN--EKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCC-cEEEccCCEECcCCC--cceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 4577889999963 222 344 999999997754222 122221223359999999999999999999987654
No 232
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.92 E-value=2.5e-09 Score=63.28 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=51.9
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCccccc-cc------------c--CCeEe--cCCeEEEEecCCCCCeeeEEEEe
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH-NI------------A--QGIIM--TNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~-~~------------~--~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
..|++|+|.|..........+.|++....+.. .. . .+... .+.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998755222237999986422211 00 0 01111 23579999999999999999998
Q ss_pred eeCCCCccceEEEEE
Q psy10918 81 NIEGDGESNAFFLNV 95 (207)
Q Consensus 81 ~~~~~~~~~~~~l~v 95 (207)
...+......+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 777666566666665
No 233
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.92 E-value=5.2e-09 Score=58.76 Aligned_cols=59 Identities=25% Similarity=0.458 Sum_probs=41.5
Q ss_pred cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.+.|.|.+.+.+++..+.|+ +.... ............+.|.+.++..+|.|.|+|.|+|
T Consensus 17 ~~~l~C~~~~~~~~~~~~W~-~~~~~---~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 17 SVTLTCSAEGGPPPPSISWY-DSNPS---FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSEESSEEEEEE-TEEEE---EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEEEEccccCCeEEEEE-ecCCc---eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 39999999998855699999 11110 1111122233455799999999999999999987
No 234
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.91 E-value=3e-08 Score=58.08 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=48.1
Q ss_pred CcEEEEeEeccCCCCcEEEEEECCc----cccc-----------cccCCeEe-----cCCeEEEEecCCCCCeeeEEEEe
Q psy10918 21 SDVYFDCDIVAVPPVYKVEWRHNNK----TLHH-----------NIAQGIIM-----TNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~~~i~W~~~~~----~~~~-----------~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
++++|.|.........++.|.|... .+.. .-..+... .+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4689999987655556899988421 1110 00011112 24679999999999999999987
Q ss_pred eeCCCCccceEEEEE
Q psy10918 81 NIEGDGESNAFFLNV 95 (207)
Q Consensus 81 ~~~~~~~~~~~~l~v 95 (207)
............|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 544333355666665
No 235
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.91 E-value=9.4e-09 Score=62.34 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=50.1
Q ss_pred eecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCcc--cc----c------cccCCeEe------cCCeEEEEecCCCC
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT--LH----H------NIAQGIIM------TNQSLVLQRVNRQS 71 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~--~~----~------~~~~~~~~------~~~~l~i~~~~~~d 71 (207)
+.+....+.+|++++|.|.+...+.. .+.||+.... .. . ....++.. ....|.|.+++.+|
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 45567778999999999999876555 8999985321 00 0 01112211 12369999999999
Q ss_pred CeeeEEEEeee
Q psy10918 72 AGNYTCVGFNI 82 (207)
Q Consensus 72 ~g~Y~C~~~~~ 82 (207)
+|.|.|.+.+.
T Consensus 82 sG~Y~C~~~~~ 92 (109)
T cd04983 82 SAVYFCALSES 92 (109)
T ss_pred CEEEEEEEecC
Confidence 99999999854
No 236
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.89 E-value=4.5e-08 Score=59.14 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=47.9
Q ss_pred CCCcEEEEeEeccCC-----------CCcEEEEEECCc--c---cc---------ccccCCeEe-------cCCeEEEEe
Q psy10918 19 EDSDVYFDCDIVAVP-----------PVYKVEWRHNNK--T---LH---------HNIAQGIIM-------TNQSLVLQR 66 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~-----------~~~~i~W~~~~~--~---~~---------~~~~~~~~~-------~~~~l~i~~ 66 (207)
.|++++|.|...... ....|.|+|-.. . +. ..-..++.. .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 389999999986432 123899998421 0 00 000112222 346799999
Q ss_pred cCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
++.+|+|.|+|.+.++.... +..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDN-YDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence 99999999999998654433 334445443
No 237
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.88 E-value=2.3e-09 Score=60.22 Aligned_cols=61 Identities=25% Similarity=0.543 Sum_probs=41.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
+..+.|.|.+.+.+....++|+ +...............+..|.|.++..+|.|.|.|.+.|
T Consensus 15 ~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 15 GGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3339999999887734499999 111111111112223456799999999999999999976
No 238
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.87 E-value=1.3e-08 Score=61.76 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=49.4
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCc--ccc--------------ccccCCeEe-----cCCeEEEEec
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK--TLH--------------HNIAQGIIM-----TNQSLVLQRV 67 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~--~~~--------------~~~~~~~~~-----~~~~l~i~~~ 67 (207)
.+.+....+.+|++++|.|...+ +.. .+.|||... .+. .....++.. ....|.|.++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 35567788899999999999877 444 899999542 111 000111211 1246999999
Q ss_pred CCCCCeeeEEEEee
Q psy10918 68 NRQSAGNYTCVGFN 81 (207)
Q Consensus 68 ~~~d~g~Y~C~~~~ 81 (207)
+.+|+|.|+|.+.+
T Consensus 80 ~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 80 EPEDSAVYLCASSL 93 (110)
T ss_pred ChhhCEEEEEEeeC
Confidence 99999999999874
No 239
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.87 E-value=1.9e-08 Score=60.67 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=49.4
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccc---c-------ccccCCeEec----CCeEEEEecCCCC
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTL---H-------HNIAQGIIMT----NQSLVLQRVNRQS 71 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~---~-------~~~~~~~~~~----~~~l~i~~~~~~d 71 (207)
+.+.+....+.+|++++|.|.+.+......+.|||.. ... . .....++... ...|+|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 4556677788999999999998765422379999843 111 0 0001122211 1249999999999
Q ss_pred CeeeEEEEee
Q psy10918 72 AGNYTCVGFN 81 (207)
Q Consensus 72 ~g~Y~C~~~~ 81 (207)
+|.|.|.+.+
T Consensus 83 sg~Y~Ca~~~ 92 (106)
T cd04980 83 AAVYYCQQYG 92 (106)
T ss_pred CEEEEEEEeC
Confidence 9999999864
No 240
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.86 E-value=7.1e-08 Score=56.37 Aligned_cols=69 Identities=22% Similarity=0.191 Sum_probs=50.0
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceee-------eccceeEEee-cCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAET-------VNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-------~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..+.+|+++.|.|.+.+.... .+.|++.+.... ....+..... .+....|.|.+++.+|+|.|.|.+..
T Consensus 7 vtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 7 VTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred eEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 356789999999999987665 788887664322 1122222222 34566799999999999999999986
No 241
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.86 E-value=2.6e-08 Score=58.53 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=45.9
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
....|.+|++|+|.|.... ... .+.|+|++....... ..........|.|.+++..|+|.|+|...
T Consensus 8 p~~vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDI-RFD-RFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCCccCCCCeEEEEEecCC-CCC-EEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 3456789999999998765 333 899999886533210 00001112368999999999999999975
No 242
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.86 E-value=4.1e-08 Score=59.20 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=49.3
Q ss_pred CCCcEEEEeEeccCC-----CCcEEEEEECCcc-------c-cc--------cccCCeEec-----CCeEEEEecCCCCC
Q psy10918 19 EDSDVYFDCDIVAVP-----PVYKVEWRHNNKT-------L-HH--------NIAQGIIMT-----NQSLVLQRVNRQSA 72 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~-----~~~~i~W~~~~~~-------~-~~--------~~~~~~~~~-----~~~l~i~~~~~~d~ 72 (207)
.|++++|.|.....+ ....+.|++.... + .. ....+.... ..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999876542 2337999995411 0 00 001122221 23699999999999
Q ss_pred eeeEEEEeeeCCCCccceEEEEEE
Q psy10918 73 GNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 73 g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
|.|.|.+.+..+.. ...+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccce-EEEEEEEEE
Confidence 99999998766644 445555554
No 243
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.85 E-value=4.9e-08 Score=55.70 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=47.0
Q ss_pred eeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..+..|..+.|.|...+..+ .+.|++++..+..+ .+......+ |.|..++..|+|.|.|.+..
T Consensus 6 ~tv~~g~~v~L~C~~~s~~A--~v~W~~ng~~l~~~-~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 6 RTVAPGADVVLPCQLRSNLA--SPVWLFNGTPLNAQ-FSYRVGTDG----LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEecCCCEEEECCCCCCCc--cEEEEECCcccCCC-cceEEeCCC----CEEEECCHhhCEEEEEEEec
Confidence 45778999999999987643 99999999875432 222222222 66888999999999999873
No 244
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.85 E-value=4e-08 Score=58.36 Aligned_cols=74 Identities=15% Similarity=0.336 Sum_probs=46.5
Q ss_pred CcEEEEeEeccCC--CCcEEEEEECCcc----c--c---------ccccCCeEe-----cCCeEEEEecCCCCCeeeEEE
Q psy10918 21 SDVYFDCDIVAVP--PVYKVEWRHNNKT----L--H---------HNIAQGIIM-----TNQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 21 ~~v~l~C~~~~~~--~~~~i~W~~~~~~----~--~---------~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~ 78 (207)
++++|.|...... ....+.|+|.... + . .....+... ...+|+|.+++..|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999986644 3347999996532 0 0 000111111 235799999999999999999
Q ss_pred Eee-eCCCCccceEEEEE
Q psy10918 79 GFN-IEGDGESNAFFLNV 95 (207)
Q Consensus 79 ~~~-~~~~~~~~~~~l~v 95 (207)
+.. +.|.. ...+.|.|
T Consensus 81 v~~~~~g~~-~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNR-QKVTTLTV 97 (98)
T ss_pred EEeCCCCcE-EEEEEEEe
Confidence 874 34443 44555555
No 245
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.82 E-value=8.5e-08 Score=57.87 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=50.3
Q ss_pred eCCcccCCCCceeeeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccceeEEeecC-c---eEEEEEecCCCCCC-e
Q psy10918 97 YSPTCKPHQQRVLGVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQAHILRSG-T---LSVVAYSPNSELDY-G 170 (207)
Q Consensus 97 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~-~---~~~l~i~~~~~~~~-g 170 (207)
.+|..+...........|+.++|.|.+.+..+ ...++|++||..+...........++ . .+.|.+.. ...|. .
T Consensus 4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~ 82 (111)
T cd05772 4 AKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHS 82 (111)
T ss_pred cCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccC
Confidence 44554444433333456788999999999644 57999999998754322211111222 2 33455543 33343 4
Q ss_pred EEEEEEecCCCC
Q psy10918 171 TLICWGSNKIGH 182 (207)
Q Consensus 171 ~y~C~~~n~~g~ 182 (207)
.|+|.+.+....
T Consensus 83 ~ytC~V~H~~l~ 94 (111)
T cd05772 83 QVTCEVQHRTLQ 94 (111)
T ss_pred ceEEEEEeCCCC
Confidence 599999986543
No 246
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.81 E-value=4.6e-08 Score=58.95 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=49.4
Q ss_pred CCCcEEEEeEeccCC-----CCcEEEEEECC---c-c--cc--ccc--------cCCeE-----ecCCeEEEEecCCCCC
Q psy10918 19 EDSDVYFDCDIVAVP-----PVYKVEWRHNN---K-T--LH--HNI--------AQGII-----MTNQSLVLQRVNRQSA 72 (207)
Q Consensus 19 ~g~~v~l~C~~~~~~-----~~~~i~W~~~~---~-~--~~--~~~--------~~~~~-----~~~~~l~i~~~~~~d~ 72 (207)
.|++++|.|.....+ ....+.|++.. . . +. ... ..+.. ....+|+|.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 389999999986542 23489999962 1 0 10 000 00111 1235699999999999
Q ss_pred eeeEEEEeeeCCCCccceEEEEEE
Q psy10918 73 GNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 73 g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
|.|.|.+.+..+.. ...+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDE-QDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCce-EEEEEEEEE
Confidence 99999998764433 455666664
No 247
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.80 E-value=6.4e-08 Score=58.90 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=47.3
Q ss_pred CCCcccCCCcEEEEeEeccCC---CCcEEEEEE---------------CCcccccc-c--cCCeE------ecCCeEEEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVP---PVYKVEWRH---------------NNKTLHHN-I--AQGII------MTNQSLVLQ 65 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~---------------~~~~~~~~-~--~~~~~------~~~~~l~i~ 65 (207)
....+..|++++|.|...... ....+.|.+ ++...... . ..+.. ..+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 345677899999999985532 223899933 22222100 0 01111 123579999
Q ss_pred ecCCCCCeeeEEEEeeeCCC
Q psy10918 66 RVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+++..|+|.|+|.+.|+.+.
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred cCCcccCEEEEEEEEcCCCc
Confidence 99999999999999987653
No 248
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.78 E-value=1.2e-07 Score=57.96 Aligned_cols=82 Identities=15% Similarity=0.311 Sum_probs=50.2
Q ss_pred CCCcccCCCcEEEEeEeccCCC---CcEEEEEEC----Ccc--cc---cc----c--c--CCeE------ecCCeEEEEe
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPP---VYKVEWRHN----NKT--LH---HN----I--A--QGII------MTNQSLVLQR 66 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~---~~~i~W~~~----~~~--~~---~~----~--~--~~~~------~~~~~l~i~~ 66 (207)
....+.+|++++|.|.....+. ...+.|++. +.+ +. .. . . .+.. ..+.+|+|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 4566789999999998754321 226999752 111 10 00 0 0 0111 1234699999
Q ss_pred cCCCCCeeeEEEEeeeCCCCc-cceEEEE
Q psy10918 67 VNRQSAGNYTCVGFNIEGDGE-SNAFFLN 94 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~~~~~~~-~~~~~l~ 94 (207)
++.+|+|.|.|.+.+..+... ...+.|+
T Consensus 86 v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred CChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 999999999999997665422 3344444
No 249
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.77 E-value=1.2e-07 Score=57.50 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=50.1
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCce--eee-----------ccceeEEee--cCceEEEEEecCCCCCCeEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSA--ETV-----------NVAQAHILR--SGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~~-----------~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y 172 (207)
...+.+|+.+.|.|.+.+.+.. .+.|++.... ... ...+..+.. ......|.|.+++.+|+|.|
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 3457799999999999877554 9999985321 000 011122222 23567799999999999999
Q ss_pred EEEEecCC
Q psy10918 173 ICWGSNKI 180 (207)
Q Consensus 173 ~C~~~n~~ 180 (207)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99999754
No 250
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.77 E-value=1.2e-07 Score=57.38 Aligned_cols=76 Identities=20% Similarity=0.377 Sum_probs=48.5
Q ss_pred CCcEEEEeEeccCCC---------CcEEEEEECC--cccc-----c-------cccCCeEe-------cCCeEEEEecCC
Q psy10918 20 DSDVYFDCDIVAVPP---------VYKVEWRHNN--KTLH-----H-------NIAQGIIM-------TNQSLVLQRVNR 69 (207)
Q Consensus 20 g~~v~l~C~~~~~~~---------~~~i~W~~~~--~~~~-----~-------~~~~~~~~-------~~~~l~i~~~~~ 69 (207)
|++++|.|.....+. ...+.|++.. .... . .-..+... ...+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 889999999865331 2489999952 1110 0 00012211 224699999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.|+|.|.|.+....... ...+.|.|.
T Consensus 82 sD~G~Y~C~v~~~~~~~-~~~v~l~V~ 107 (110)
T cd05878 82 SDSGVYRCEVMHGIEDE-QDTVPLEVT 107 (110)
T ss_pred hhCEEEEEEEEeCCCcc-eEEEEEEEE
Confidence 99999999998654333 445666665
No 251
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.77 E-value=3.9e-08 Score=59.18 Aligned_cols=67 Identities=10% Similarity=0.214 Sum_probs=45.4
Q ss_pred cccCCCcEEEEeEeccC-CCCcEEEEEECCcc--cc-------------ccccCCeE--e----cCCeEEEEecCCCCCe
Q psy10918 16 HIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKT--LH-------------HNIAQGII--M----TNQSLVLQRVNRQSAG 73 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~--~~-------------~~~~~~~~--~----~~~~l~i~~~~~~d~g 73 (207)
.+.+|++++|.|.+... +.. .+.|++.... .. .....++. . ...+|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSY-YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcc-eEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 46789999999998875 444 8999995431 10 00011111 1 1236999999999999
Q ss_pred eeEEEEeeeC
Q psy10918 74 NYTCVGFNIE 83 (207)
Q Consensus 74 ~Y~C~~~~~~ 83 (207)
.|.|.+.+..
T Consensus 81 ~Y~C~v~~~~ 90 (105)
T cd00099 81 VYYCAVSLSG 90 (105)
T ss_pred EEEEEEecCC
Confidence 9999998654
No 252
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.77 E-value=9.5e-08 Score=56.17 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=49.7
Q ss_pred cCCCcccCCCcEEEEeEeccCCCCcE--EEEEECCccccccccC----CeEecCCeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVPPVYK--VEWRHNNKTLHHNIAQ----GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~~~~~--i~W~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.+..+.+|+.++|.|.+.+..+..+ |.||+++..+...... .......+|.+...+.+|...|+|.+.+..+.
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 44555789999999999977544435 7999999888652211 11122345777655555556999999976544
No 253
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.76 E-value=1.2e-07 Score=53.60 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=44.5
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC--ceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG--TLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+.|.|.+.|..|+..|.|++++..+............+ ..+.|.+..-...|...|+|.|.|+.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 67999999876656999999987754321110011111 35678887777778889999999976
No 254
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.76 E-value=1.2e-07 Score=57.14 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=49.9
Q ss_pred eCCcEEEEEEeccCC-----CCceEEEEEcCce---e---eecc-c--------eeEEee---cCceEEEEEecCCCCCC
Q psy10918 113 RQEKVNISCEVDANP-----PDVKFSWTFNNSA---E---TVNV-A--------QAHILR---SGTLSVVAYSPNSELDY 169 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~---~---~~~~-~--------~~~~~~---~~~~~~l~i~~~~~~~~ 169 (207)
.|+.++|.|.....| ....+.|++.... . .... . ..+... ......|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999887653 2347999985321 0 0000 0 011111 12245799999999999
Q ss_pred eEEEEEEecCCCCCccceEEEE
Q psy10918 170 GTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 170 g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|.|.|.+.+..+.....+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v 102 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRL 102 (106)
T ss_pred EEEEEEEEecccceEEEEEEEE
Confidence 9999999997776654444433
No 255
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.76 E-value=2e-07 Score=60.21 Aligned_cols=85 Identities=21% Similarity=0.430 Sum_probs=57.5
Q ss_pred CCCcccCCCcEEEEeEec-cCCCCcEEEEEECCccccc----------cccCCeEe-----cCCeEEEEecCCCCCeeeE
Q psy10918 13 NPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNKTLHH----------NIAQGIIM-----TNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~~~~~----------~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~ 76 (207)
...+|.+|++++|.|... +...+ ++.|+|....+.. ....++.. ...+|+|.+++.+|+|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~-qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSI-LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccc-eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 345688999999999974 44444 8999996432211 01112222 4567999999999999999
Q ss_pred EEEee-eCCCCccceEEEEEEeC
Q psy10918 77 CVGFN-IEGDGESNAFFLNVMYS 98 (207)
Q Consensus 77 C~~~~-~~~~~~~~~~~l~v~~~ 98 (207)
|.... +.|...+...-|+|...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEch
Confidence 99873 33434466667777743
No 256
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.76 E-value=1.8e-07 Score=55.68 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=45.7
Q ss_pred CcEEEEeEeccCC--CCcEEEEEECCcc-----c---cc--c--------ccCCeEe----cCCeEEEEecCCCCCeeeE
Q psy10918 21 SDVYFDCDIVAVP--PVYKVEWRHNNKT-----L---HH--N--------IAQGIIM----TNQSLVLQRVNRQSAGNYT 76 (207)
Q Consensus 21 ~~v~l~C~~~~~~--~~~~i~W~~~~~~-----~---~~--~--------~~~~~~~----~~~~l~i~~~~~~d~g~Y~ 76 (207)
.+++|.|...... ....+.|++.... + .. . ++..+.. .+.+|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999885433 2237999984311 0 00 0 0111111 1346999999999999999
Q ss_pred EEEee-eCCCCccceEEEEE
Q psy10918 77 CVGFN-IEGDGESNAFFLNV 95 (207)
Q Consensus 77 C~~~~-~~~~~~~~~~~l~v 95 (207)
|.+.+ +.|.. ...+.|.|
T Consensus 81 C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred EEEEeCCCCCe-eeEEEEEe
Confidence 99986 44443 55666665
No 257
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.75 E-value=2.1e-07 Score=56.06 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=50.4
Q ss_pred eCCcEEEEEEeccCC-----CCceEEEEEcC---cee---ee-ccce--------eEEe---ecCceEEEEEecCCCCCC
Q psy10918 113 RQEKVNISCEVDANP-----PDVKFSWTFNN---SAE---TV-NVAQ--------AHIL---RSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~-----~~~~~~W~~~~---~~~---~~-~~~~--------~~~~---~~~~~~~l~i~~~~~~~~ 169 (207)
.|+.++|.|.....+ ....+.|++.. ... .. .... .+.. .......|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999987653 23599999862 110 00 0000 1111 122456799999999999
Q ss_pred eEEEEEEecCCCCCccceEEEE
Q psy10918 170 GTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 170 g~y~C~~~n~~g~~~~~~~~~v 191 (207)
|.|.|.+.+..+.....+.|.|
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEE
Confidence 9999999987665544444443
No 258
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.73 E-value=2.6e-07 Score=56.63 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=47.0
Q ss_pred cCCCcccCCCcEEEEeEeccCC---CCcEEEEEECCc------ccc---cc-----ccCC----eEe------cCCeEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP---PVYKVEWRHNNK------TLH---HN-----IAQG----IIM------TNQSLVL 64 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~---~~~~i~W~~~~~------~~~---~~-----~~~~----~~~------~~~~l~i 64 (207)
+....+.+|++++|.|...... ....+.|++... .+. .. .... ... ...+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3455678999999999885432 113699987321 000 00 0001 111 1246999
Q ss_pred EecCCCCCeeeEEEEeeeCCC
Q psy10918 65 QRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
.+++.+|+|.|.|.+.+....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999876553
No 259
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.73 E-value=1.6e-07 Score=56.01 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=45.6
Q ss_pred CCcEEEEeEeccC--CCCcEEEEEECCc--ccc--cc-----------ccCCeEe-------cCCeEEEEecCCCCCeee
Q psy10918 20 DSDVYFDCDIVAV--PPVYKVEWRHNNK--TLH--HN-----------IAQGIIM-------TNQSLVLQRVNRQSAGNY 75 (207)
Q Consensus 20 g~~v~l~C~~~~~--~~~~~i~W~~~~~--~~~--~~-----------~~~~~~~-------~~~~l~i~~~~~~d~g~Y 75 (207)
|++++|.|..... .....+.|++... .+. .. ...+... ...+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7889999997532 2223688988542 110 00 0011111 124699999999999999
Q ss_pred EEEEeeeCCCCccceEEEEE
Q psy10918 76 TCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 76 ~C~~~~~~~~~~~~~~~l~v 95 (207)
+|.+.+..+. ....+.|+|
T Consensus 81 ~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEecCCcE-EEEEEEEEE
Confidence 9999876554 243444544
No 260
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.72 E-value=7.4e-08 Score=56.83 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=48.2
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc--eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA--QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.|..+.|.|.+.+. |.++.+.|+++|..+..... ......++. .+.|.+......+.+.|+|.|.+....
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 57899999999998 55569999999877543321 111222333 234666666666999999999987654
No 261
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.71 E-value=5.9e-07 Score=54.70 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=52.6
Q ss_pred eeeeeeCCcEEEEEEeccCC---CCceEEEEEc---------------Cceeeecc----ceeEEe--ecCceEEEEEec
Q psy10918 108 VLGVARQEKVNISCEVDANP---PDVKFSWTFN---------------NSAETVNV----AQAHIL--RSGTLSVVAYSP 163 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~---------------~~~~~~~~----~~~~~~--~~~~~~~l~i~~ 163 (207)
...+..|+.+.|.|...... ....+.|.+. +....... .+..+. .......+.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 34567899999999987642 2349999542 11110000 011111 112345689999
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
++.+|.|.|+|.+.|..+.......+.+.
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred CCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 99999999999999987655444444443
No 262
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.70 E-value=2.4e-07 Score=56.22 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.6
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeee-------------c--cceeEEeec-CceEEEEEecCCCCCC
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNS--AETV-------------N--VAQAHILRS-GTLSVVAYSPNSELDY 169 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~-------------~--~~~~~~~~~-~~~~~l~i~~~~~~~~ 169 (207)
...+.+|+.++|.|...+ +.+ .+.|++... .... . ..+...... .....|.|.+++.+|+
T Consensus 7 ~~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred ceEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 345779999999999987 544 899998532 1110 0 011112222 2456799999999999
Q ss_pred eEEEEEEecCC
Q psy10918 170 GTLICWGSNKI 180 (207)
Q Consensus 170 g~y~C~~~n~~ 180 (207)
|.|.|.+.+..
T Consensus 85 g~Y~Ca~~~~~ 95 (110)
T cd05899 85 AVYLCASSLGG 95 (110)
T ss_pred EEEEEEeeCCC
Confidence 99999998753
No 263
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.69 E-value=4.3e-07 Score=54.92 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=50.7
Q ss_pred eCCcEEEEEEeccCCC-----------CceEEEEEcC--ceee-e--cc----------ceeEEee---cCceEEEEEec
Q psy10918 113 RQEKVNISCEVDANPP-----------DVKFSWTFNN--SAET-V--NV----------AQAHILR---SGTLSVVAYSP 163 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~-----------~~~~~W~~~~--~~~~-~--~~----------~~~~~~~---~~~~~~l~i~~ 163 (207)
.|++++|.|....... ...|.|++.. .... + .. .+..+.. ......|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 3789999998875421 2499999842 1110 0 00 1111211 22456799999
Q ss_pred CCCCCCeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 164 NSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
++.+|+|.|.|.+.+.+... +..+.+.+.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~--~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDN--YDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCc--eeEEEEEEEe
Confidence 99999999999999766555 4445555544
No 264
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.69 E-value=8.3e-08 Score=56.94 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=42.8
Q ss_pred cccCCCcEEEEeEeccC--CCCcEEEEEECCc--ccc------c----cccCCeEe----cCCeEEEEecCCCCCeeeEE
Q psy10918 16 HIKEDSDVYFDCDIVAV--PPVYKVEWRHNNK--TLH------H----NIAQGIIM----TNQSLVLQRVNRQSAGNYTC 77 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~--~~~------~----~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C 77 (207)
.+.+|++++|.|..... ... .+.||+... ... . ....++.. ....|+|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 46789999999998654 333 799998432 110 0 00112211 12359999999999999999
Q ss_pred EEee
Q psy10918 78 VGFN 81 (207)
Q Consensus 78 ~~~~ 81 (207)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9864
No 265
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.69 E-value=4.4e-07 Score=53.63 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=28.6
Q ss_pred CeEEEEecCCCCCeeeEEEEee-eCCCCccceEEEEE
Q psy10918 60 QSLVLQRVNRQSAGNYTCVGFN-IEGDGESNAFFLNV 95 (207)
Q Consensus 60 ~~l~i~~~~~~d~g~Y~C~~~~-~~~~~~~~~~~l~v 95 (207)
.+|.|.+++..|+|.|.|.+.+ +.|. .+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 6799999999999999999998 4553 455666766
No 266
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.66 E-value=2.5e-07 Score=54.68 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=50.8
Q ss_pred eCCcEEEEEEecc-CCCCceEEEEEcCceeeeccc--------------eeEEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 113 RQEKVNISCEVDA-NPPDVKFSWTFNNSAETVNVA--------------QAHILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 113 ~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~--------------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
.|++++|.|.... ... ..+.|++.......... ..+...+.....|.|.+++.+|+|.|.|.+.
T Consensus 3 ~G~sVtL~c~~~~~~~~-~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDGTEI-ESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCCcEE-EEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 6899999998765 333 48999986432211110 0123333444679999999999999999999
Q ss_pred cCCCCCccceEEEEe
Q psy10918 178 NKIGHQRVPCVFHIV 192 (207)
Q Consensus 178 n~~g~~~~~~~~~v~ 192 (207)
+..|.. ....+.+.
T Consensus 82 ~~~~~~-~~~~f~L~ 95 (97)
T cd05775 82 TKNGVT-ITKEFTLH 95 (97)
T ss_pred cCCCCe-EEEEEEEE
Confidence 877543 34444443
No 267
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.66 E-value=4e-07 Score=53.98 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=47.5
Q ss_pred CcEEEEEEeccCC--CCceEEEEEcCce--eee------------ccceeEEeecC---ceEEEEEecCCCCCCeEEEEE
Q psy10918 115 EKVNISCEVDANP--PDVKFSWTFNNSA--ETV------------NVAQAHILRSG---TLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 115 ~~~~l~C~~~~~~--~~~~~~W~~~~~~--~~~------------~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~C~ 175 (207)
+.++|.|.....+ ....+.|++.... ... .....+....+ ....|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999887654 3348999986431 000 00011111111 345799999999999999999
Q ss_pred Eec-CCCCCccceEEEE
Q psy10918 176 GSN-KIGHQRVPCVFHI 191 (207)
Q Consensus 176 ~~n-~~g~~~~~~~~~v 191 (207)
+.+ +.|.......+.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 4566655544443
No 268
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.66 E-value=6.2e-08 Score=59.08 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=49.5
Q ss_pred eeeecCCCcccCCCcEEEEeEec-cCCCCcEEEEEECCc-----ccc---cc---------ccCCe--Eec----CCeEE
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIV-AVPPVYKVEWRHNNK-----TLH---HN---------IAQGI--IMT----NQSLV 63 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~~i~W~~~~~-----~~~---~~---------~~~~~--~~~----~~~l~ 63 (207)
+..++....+.+|+++.|.|... ..... .+.|++... .+. .. ...+. ... ..+|.
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 82 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQS-SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT 82 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGS-EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcc-eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence 33456777889999999999988 33433 899999432 111 00 00011 111 12599
Q ss_pred EEecCCCCCeeeEEEEeee
Q psy10918 64 LQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 64 i~~~~~~d~g~Y~C~~~~~ 82 (207)
|.+++..|+|.|.|.+...
T Consensus 83 i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 83 IKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESSESGGGEEEEEEEEEES
T ss_pred ECCCCcCcCEEEEEEEEEC
Confidence 9999999999999999865
No 269
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.66 E-value=6.4e-07 Score=54.22 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=49.8
Q ss_pred eCCcEEEEEEeccCCC---------CceEEEEEcC--ceeeec---cce--------eEEe-----ecCceEEEEEecCC
Q psy10918 113 RQEKVNISCEVDANPP---------DVKFSWTFNN--SAETVN---VAQ--------AHIL-----RSGTLSVVAYSPNS 165 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~~---------~~~~~W~~~~--~~~~~~---~~~--------~~~~-----~~~~~~~l~i~~~~ 165 (207)
.|++++|.|.....+. ...+.|++.. +....- ... .+.. .......|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 4789999998876432 2589999852 211100 000 1111 12345679999999
Q ss_pred CCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 166 ELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
.+|+|.|.|.+..........+.|.|
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 99999999999986555544544443
No 270
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.65 E-value=5e-07 Score=53.79 Aligned_cols=75 Identities=11% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCcEEEEEEeccC--CCCceEEEEEcCceeee---cc-------------ceeEEee---cCceEEEEEecCCCCCCeEE
Q psy10918 114 QEKVNISCEVDAN--PPDVKFSWTFNNSAETV---NV-------------AQAHILR---SGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 114 g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~---~~-------------~~~~~~~---~~~~~~l~i~~~~~~~~g~y 172 (207)
|+.+.|.|..... .....+.|++....... .. .+..+.. ..+...|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 5788999987532 12237888875421110 00 0111111 12345799999999999999
Q ss_pred EEEEecCCCCCccceE
Q psy10918 173 ICWGSNKIGHQRVPCV 188 (207)
Q Consensus 173 ~C~~~n~~g~~~~~~~ 188 (207)
+|.+.|..+.....+.
T Consensus 81 ~C~v~~~~~~~~~~i~ 96 (100)
T cd05713 81 TCFFQSDGFYEEATVE 96 (100)
T ss_pred EEEEecCCcEEEEEEE
Confidence 9999987665444433
No 271
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.65 E-value=5.7e-07 Score=52.72 Aligned_cols=62 Identities=15% Similarity=0.355 Sum_probs=40.6
Q ss_pred CcEEEEeEeccCCCCcEEEEEECCc----ccc-----------ccccCCeEe-----cCCeEEEEecCCCCCeeeEEEEe
Q psy10918 21 SDVYFDCDIVAVPPVYKVEWRHNNK----TLH-----------HNIAQGIIM-----TNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 21 ~~v~l~C~~~~~~~~~~i~W~~~~~----~~~-----------~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
++++|.|.........++.|.|... .+. ..-..+... .+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4689999986544445889988532 110 000011111 24679999999999999999997
Q ss_pred ee
Q psy10918 81 NI 82 (207)
Q Consensus 81 ~~ 82 (207)
..
T Consensus 81 t~ 82 (96)
T cd05889 81 TY 82 (96)
T ss_pred eC
Confidence 54
No 272
>KOG3515|consensus
Probab=98.64 E-value=1.4e-07 Score=73.44 Aligned_cols=175 Identities=15% Similarity=0.216 Sum_probs=102.8
Q ss_pred CCcccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeEec----CCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 14 PDHIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGIIMT----NQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
...+.+|+.+.|.|.+.+ .|.. .++|+++...+........... ...+.+..-..++.-...|.+.| .. .
T Consensus 215 ~qsF~~g~~inlvc~~~gg~P~~-~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~---~ 289 (741)
T KOG3515|consen 215 QQSFTEGQTINLVCNAQGGNPSQ-QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LL---A 289 (741)
T ss_pred cCcccccceEEEEehhhcCCcch-hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-cc---c
Confidence 356788999999997765 4555 8999998876654211111111 12344444444445566799887 11 2
Q ss_pred ceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEe-ecCc--eEEEEEecCC
Q psy10918 89 NAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSGT--LSVVAYSPNS 165 (207)
Q Consensus 89 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~--~~~l~i~~~~ 165 (207)
....+.+..++..............|+...+.|...+..++..+.|+++.....-......-. ..+. ...+......
T Consensus 290 ~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~ 369 (741)
T KOG3515|consen 290 ASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSS 369 (741)
T ss_pred cceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccc
Confidence 233355566665554455555567888999998777665556999999544321111111100 0111 1224445677
Q ss_pred CCCCeEEEEEEecCCCCCccceEEEEee
Q psy10918 166 ELDYGTLICWGSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 166 ~~~~g~y~C~~~n~~g~~~~~~~~~v~~ 193 (207)
..|.|.|.|.+.|.......+..+.+.+
T Consensus 370 ~~~~g~v~c~a~~~~~~~~sss~~~l~~ 397 (741)
T KOG3515|consen 370 QQDGGQVTCPADNLELAHSSSSSFLLPV 397 (741)
T ss_pred hhcCceEEccccccccccccccceeccc
Confidence 8899999999999886554454444443
No 273
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.63 E-value=8.7e-07 Score=50.65 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=42.8
Q ss_pred EEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCc----eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 117 VNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGT----LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 117 ~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.|.+.+. |++ .+.|+++++.+.... .......+. .+.|.+......+.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~-~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAA-TIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCC-eEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 5899999886 554 999999987754211 111111221 3346666566667789999999987543
No 274
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.63 E-value=5.1e-07 Score=51.60 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=43.4
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEe-ecC---ceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSG---TLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~---~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
+.|.|.+.+..|+..++|+++|..+.......... .++ ..+.|.+......+...|+|.|.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 68999999875557999999988753211111111 111 1345666666677788999999987643
No 275
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.63 E-value=1.1e-07 Score=56.13 Aligned_cols=67 Identities=22% Similarity=0.357 Sum_probs=46.1
Q ss_pred cCCCcEEEEeEeccC-CCCcEEEEEECCcccccccc--CCeEecCC------eEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 18 KEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIA--QGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
..|+.+.|.|.+.+. |....++|+++|..+..... ......++ .|.+......|.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999887 54458999999988865432 11112222 355555555699999999987543
No 276
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.61 E-value=3.6e-07 Score=55.99 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=48.1
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--cccc----------ccccCCeEec------CCeEEEEecCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLH----------HNIAQGIIMT------NQSLVLQRVNRQ 70 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~----------~~~~~~~~~~------~~~l~i~~~~~~ 70 (207)
.+.+....+.+|++++|.|..........+.||+.. ..+. .....++... ..+|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 355667778999999999997653223379999832 1110 0001122211 235999999999
Q ss_pred CCeeeEEEEee
Q psy10918 71 SAGNYTCVGFN 81 (207)
Q Consensus 71 d~g~Y~C~~~~ 81 (207)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999874
No 277
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.61 E-value=4.4e-07 Score=54.64 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=47.9
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeee-c----------cceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNS--AETV-N----------VAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~-~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
...+.+|+.+.|.|.+.+......+.|++... .... . ..+...........|.|.+++.+|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 34567999999999997665234899997431 1100 0 011122223345679999999999999999
Q ss_pred EEecC
Q psy10918 175 WGSNK 179 (207)
Q Consensus 175 ~~~n~ 179 (207)
.+.+.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 99764
No 278
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.61 E-value=8e-07 Score=50.85 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=43.6
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecC-c---eEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSG-T---LSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.|.|.+.+..|+..|+|+++|..+...........++ . .+.|.+......+...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 68999999874435999999997654322111112222 1 2445565666778889999999987533
No 279
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.61 E-value=1.5e-07 Score=57.69 Aligned_cols=71 Identities=13% Similarity=0.355 Sum_probs=47.8
Q ss_pred eecCCCcccCCCcEEEEeEecc--CCCCcEEEEEECC--cccc------c---------cccCCeEe------cCCeEEE
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNN--KTLH------H---------NIAQGIIM------TNQSLVL 64 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~--~~~~------~---------~~~~~~~~------~~~~l~i 64 (207)
+.+....+.+|++++|.|.+.+ .+.. .+.||+.. .... . ....++.. ....|+|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 81 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI 81 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence 4456677888999999999866 4444 89999942 1110 0 00112221 1235999
Q ss_pred EecCCCCCeeeEEEEee
Q psy10918 65 QRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 65 ~~~~~~d~g~Y~C~~~~ 81 (207)
.+++.+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 82 QNLEKEDSATYYCAYWE 98 (116)
T ss_pred EECCHHHCEEEEEEEec
Confidence 99999999999999863
No 280
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.60 E-value=5.5e-07 Score=52.73 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=44.4
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeecc------c---------eeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNV------A---------QAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~------~---------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
|++++|.|........ .+.|+++........ . ..+...... ..|.|.+++.+|+|.|.|.+..
T Consensus 1 G~~VtL~c~~~~~~~~-~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENLQ-EITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCCE-EEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEc
Confidence 6789999988765554 999998653321100 0 011111122 4699999999999999999998
Q ss_pred CCC
Q psy10918 179 KIG 181 (207)
Q Consensus 179 ~~g 181 (207)
..+
T Consensus 79 ~~~ 81 (92)
T cd05741 79 TNG 81 (92)
T ss_pred CCC
Confidence 764
No 281
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.60 E-value=2.9e-07 Score=55.52 Aligned_cols=65 Identities=15% Similarity=0.362 Sum_probs=42.4
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCcc---c------c-c-c------c---cCCeEe--c--C--CeEEEEecCC
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT---L------H-H-N------I---AQGIIM--T--N--QSLVLQRVNR 69 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~---~------~-~-~------~---~~~~~~--~--~--~~l~i~~~~~ 69 (207)
.+.+|++++|.|..........+.||+.... . . . . . ..++.. . + ..|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 4678999999999865433337999984321 0 0 0 0 0 112211 1 1 2499999999
Q ss_pred CCCeeeEEEEe
Q psy10918 70 QSAGNYTCVGF 80 (207)
Q Consensus 70 ~d~g~Y~C~~~ 80 (207)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 282
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.59 E-value=5.5e-07 Score=52.89 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=45.3
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
.+..|++++|.|.... ... .+.|+|+|.......... ....+....+.|.+++.+|+|.|.|...
T Consensus 11 vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~~~~~~~~~-~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFD-RFILYKEGRSKPVLHLYE-KHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ccCCCCeEEEEEecCC-CCC-EEEEEECCCCCCceeccc-ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 3568999999998765 443 899999887633211000 0112334568999999999999999975
No 283
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.58 E-value=5.8e-07 Score=54.01 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=48.2
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCce--ee-e-------------ccceeEEeecC--ceEEEEEecCCCCCCeEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSA--ET-V-------------NVAQAHILRSG--TLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~-~-------------~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y 172 (207)
+.+|+.++|.|..........+.|++.... .. + ...+....... ....|.|.+++.+|+|.|
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y 82 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY 82 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 568999999999987623349999985331 10 0 00111222222 456799999999999999
Q ss_pred EEEEecCCC
Q psy10918 173 ICWGSNKIG 181 (207)
Q Consensus 173 ~C~~~n~~g 181 (207)
.|.+.+..+
T Consensus 83 ~C~v~~~~~ 91 (105)
T cd00099 83 YCAVSLSGG 91 (105)
T ss_pred EEEEecCCC
Confidence 999998664
No 284
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.58 E-value=5.4e-07 Score=51.52 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=40.3
Q ss_pred EEEEeEeccC-CCCcEEEEEECCccccccccCCeE-ecC------CeEEEEecCCCCCeeeEEEEeeeCCC
Q psy10918 23 VYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGII-MTN------QSLVLQRVNRQSAGNYTCVGFNIEGD 85 (207)
Q Consensus 23 v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~-~~~------~~l~i~~~~~~d~g~Y~C~~~~~~~~ 85 (207)
+.|.|.+.+. |.+ ++.|++++..+.... .... ..+ +.|.+.....++.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~-~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAA-TIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCC-eEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999765 665 999999998876432 1111 112 23555554556677999999876543
No 285
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.57 E-value=2.1e-06 Score=52.44 Aligned_cols=76 Identities=16% Similarity=0.309 Sum_probs=47.8
Q ss_pred ceeeeeeCCcEEEEEEeccCCC---CceEEEEEc---Ccee-ee---ccc-------e--eEEe----ecCceEEEEEec
Q psy10918 107 RVLGVARQEKVNISCEVDANPP---DVKFSWTFN---NSAE-TV---NVA-------Q--AHIL----RSGTLSVVAYSP 163 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~---~~~~-~~---~~~-------~--~~~~----~~~~~~~l~i~~ 163 (207)
....+..|+.+.|.|.....++ ...+.|++. +... .. ... . .+.. .......|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 3456789999999998764332 236999852 1110 00 000 0 0110 112345699999
Q ss_pred CCCCCCeEEEEEEecCCCC
Q psy10918 164 NSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 164 ~~~~~~g~y~C~~~n~~g~ 182 (207)
++.+|+|.|.|.+.|..+.
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999987664
No 286
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.57 E-value=8.9e-07 Score=54.27 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=48.5
Q ss_pred ceeeeeeCCcEEEEEEecc--CCCCceEEEEEcC--ceee--e--------------ccceeEEeecC--ceEEEEEecC
Q psy10918 107 RVLGVARQEKVNISCEVDA--NPPDVKFSWTFNN--SAET--V--------------NVAQAHILRSG--TLSVVAYSPN 164 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~--~~~~~~~~W~~~~--~~~~--~--------------~~~~~~~~~~~--~~~~l~i~~~ 164 (207)
....+.+|+.++|.|...+ .+.+ .+.|++.. .... . ...+..+..+. ....|.|.++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 3445678999999999876 4555 89999852 2110 0 01122233333 4677999999
Q ss_pred CCCCCeEEEEEEec
Q psy10918 165 SELDYGTLICWGSN 178 (207)
Q Consensus 165 ~~~~~g~y~C~~~n 178 (207)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999975
No 287
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.57 E-value=7e-07 Score=52.96 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=46.5
Q ss_pred eeeCCcEEEEEEeccC--CCCceEEEEEcCc--eeee-c----------cceeEEeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 111 VARQEKVNISCEVDAN--PPDVKFSWTFNNS--AETV-N----------VAQAHILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~--~~~~-~----------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
+.+|+.+.|.|..... ... .+.|++... .... . ..+.....+.....|.|.+++.+|+|.|.|.
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 5689999999998764 333 799998432 1110 0 0122233344566799999999999999999
Q ss_pred EecC
Q psy10918 176 GSNK 179 (207)
Q Consensus 176 ~~n~ 179 (207)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 9863
No 288
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.55 E-value=1.4e-06 Score=49.91 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=40.7
Q ss_pred EEEEeEeccC-CCCcEEEEEECCccccccccCCeEe-------cCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 23 VYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGIIM-------TNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 23 v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
+.|.|.+.+. |.. .|+|+++|..+.......... ....|.|.....+|...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~-~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAA-NIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCC-EeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899999875 665 999999998876532111111 112355555556677899999987653
No 289
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.53 E-value=8.4e-07 Score=50.70 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=40.6
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCe-------EecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-------IMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
++|.|.+.+..++..++|+++|..+........ ....+.|.+.....++...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999987433359999999998764321111 1112346666555667789999998764
No 290
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.52 E-value=2.7e-06 Score=51.49 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 59 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+.+|.|.+++..|+|.|.|.+.+..... ...+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence 4579999999999999999998765444 445666654
No 291
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.51 E-value=9.3e-07 Score=52.81 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=44.5
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCcee------eecc------------ceeEEeecCceEEEEEecCCCCCCeE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAE------TVNV------------AQAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~------~~~~------------~~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
.+.+|+.+.|.|....... ..+.|+|..... .... .+..+..++ .|.|.+++.+|+|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~-~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G~ 84 (105)
T cd05774 9 QVAEGENVLLLVHNLPENL-LAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTGF 84 (105)
T ss_pred cccCCCCEEEEecCCCCCc-eEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCEE
Confidence 3568999999986543333 399999953211 0000 111122222 48999999999999
Q ss_pred EEEEEecCCC
Q psy10918 172 LICWGSNKIG 181 (207)
Q Consensus 172 y~C~~~n~~g 181 (207)
|+|.+.+...
T Consensus 85 Y~~~v~~~~~ 94 (105)
T cd05774 85 YTLQTITTNF 94 (105)
T ss_pred EEEEEEeCCc
Confidence 9999998763
No 292
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.49 E-value=6.6e-06 Score=50.39 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=47.6
Q ss_pred ceeeeeeCCcEEEEEEeccCC---CCceEEEEEcCce----ee---ec--------cc----eeEEee--cCceEEEEEe
Q psy10918 107 RVLGVARQEKVNISCEVDANP---PDVKFSWTFNNSA----ET---VN--------VA----QAHILR--SGTLSVVAYS 162 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~----~~---~~--------~~----~~~~~~--~~~~~~l~i~ 162 (207)
....+..|+.++|.|...... ....+.|++.... .. .. .. +..+.. ......|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 344567999999999886432 1237999863220 00 00 00 000111 1223569999
Q ss_pred cCCCCCCeEEEEEEecCCCC
Q psy10918 163 PNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~g~ 182 (207)
+++.+|+|.|.|.+.|....
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eCCcccCEEEEEEEEeCCCC
Confidence 99999999999999987654
No 293
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.48 E-value=1.4e-06 Score=51.31 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=47.9
Q ss_pred eeeCCcEEEEEEeccCCCCce--EEEEEcCceeeeccceeE-EeecCceEEEEEecCCCCCCeEEEEEEecCCCCC
Q psy10918 111 VARQEKVNISCEVDANPPDVK--FSWTFNNSAETVNVAQAH-ILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~--~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 183 (207)
+.+|+.++|.|.+.+..+... +.|++++..+........ .......+++.+...+.+|...|+|.|.+..+..
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 568999999999998654335 799998876532211000 0111224567776666666669999999877654
No 294
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.48 E-value=5.4e-07 Score=53.51 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=44.6
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCceeeecccee--EEeecCce---EEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQA--HILRSGTL---SVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
..+..+.|.|.+.+. |..+.+.|+++|..+....... ....+++. +.|.+..-...+...|+|.+.....
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 356779999999996 5467999999988753221111 11223432 3354544444457799999998653
No 295
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.47 E-value=3.1e-06 Score=49.63 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=47.7
Q ss_pred cEEEEEEeccCCCCceEEEEEcCce--eeecc--------------ceeEEe-ecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSA--ETVNV--------------AQAHIL-RSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~--~~~~~--------------~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.++|.|.....+....+.|.|.... ..+.. .+.... .......|.|.+++.+|.|.|+|.+.+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 5789998875544458999884321 11100 011111 122345799999999999999999865
Q ss_pred -CCCCCccceEEEE
Q psy10918 179 -KIGHQRVPCVFHI 191 (207)
Q Consensus 179 -~~g~~~~~~~~~v 191 (207)
+.|+...+..+.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 4577666655544
No 296
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.46 E-value=1.4e-06 Score=52.51 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=46.6
Q ss_pred CCcEEEEeEeccCC------CCcEEEEEECC-----ccc----cccc--------cCCeEe-------cCCeEEEEecCC
Q psy10918 20 DSDVYFDCDIVAVP------PVYKVEWRHNN-----KTL----HHNI--------AQGIIM-------TNQSLVLQRVNR 69 (207)
Q Consensus 20 g~~v~l~C~~~~~~------~~~~i~W~~~~-----~~~----~~~~--------~~~~~~-------~~~~l~i~~~~~ 69 (207)
|++++|.|...-.| ....+.|.+.. ... ..+. ..+... ...+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999964221 23489999841 110 0000 001111 134699999999
Q ss_pred CCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 70 QSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 70 ~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+|+|.|.|.+..... .....+.|+|.
T Consensus 82 ~D~G~Y~C~v~~g~~-~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGIN-DEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence 999999999987543 22445666654
No 297
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.44 E-value=3e-06 Score=50.14 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=46.3
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCcee--eec---c-----------ceeEE-eecCceEEEEEecCCCCCCeEEEEEE
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAE--TVN---V-----------AQAHI-LRSGTLSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~--~~~---~-----------~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~ 176 (207)
|+.++|.|..........+.|++..... .+. . .+... ........|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6789999986654333479999853210 000 0 00011 11223567999999999999999998
Q ss_pred ecC-CCCCccceEEE
Q psy10918 177 SNK-IGHQRVPCVFH 190 (207)
Q Consensus 177 ~n~-~g~~~~~~~~~ 190 (207)
... .|..+....|+
T Consensus 81 ~~~p~g~~~~~~~L~ 95 (97)
T cd05846 81 NTFPDGSKSGTMCLT 95 (97)
T ss_pred EeCCCCCeeeEEEEE
Confidence 753 45543333333
No 298
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.43 E-value=3.5e-06 Score=49.94 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=47.3
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEEcCcee---ee---------ccceeEEe--ecCceEEEEEecCCCCCCeEEEEE
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAE---TV---------NVAQAHIL--RSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~---~~---------~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
.+.+|++++|.|..........+.|++..... .+ ...+..+. .......|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 35789999999988754333489999854221 00 00112221 223456799999999999999999
Q ss_pred EecCC
Q psy10918 176 GSNKI 180 (207)
Q Consensus 176 ~~n~~ 180 (207)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 98754
No 299
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.42 E-value=4e-06 Score=47.02 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=40.7
Q ss_pred EEEEEEeccC-CCCceEEEEEcCceeeeccceeEEe--ecCc---eEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 117 VNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHIL--RSGT---LSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 117 ~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
++|.|.+.+. |+.+.+.|+++|..+.......... .++. .+.|.+......+...|+|.|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999997 5546999999987532221111111 2333 2345555446667789999998754
No 300
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.39 E-value=1.7e-06 Score=51.25 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=43.4
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCcccc-----------ccccCCeEe--c----CCeEEEEecCCCCCeeeEEE
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH-----------HNIAQGIIM--T----NQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~-----------~~~~~~~~~--~----~~~l~i~~~~~~d~g~Y~C~ 78 (207)
.+.+|++++|.|..........+.|++...... .....++.. . ...|+|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 457899999999976532223789998542110 000111211 1 13599999999999999999
Q ss_pred Eeee
Q psy10918 79 GFNI 82 (207)
Q Consensus 79 ~~~~ 82 (207)
+...
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 8753
No 301
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.39 E-value=3.6e-06 Score=50.77 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=45.1
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCce---e--e----ec------------cceeEE--eecCceEEEEEecCCCC
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSA---E--T----VN------------VAQAHI--LRSGTLSVVAYSPNSEL 167 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~---~--~----~~------------~~~~~~--~~~~~~~~l~i~~~~~~ 167 (207)
+.+|+.++|.|..........+.|++.... . . .. ..+... ........|.|.+++.+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 82 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE 82 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH
Confidence 568999999999876433338999984321 0 0 00 011111 22334567999999999
Q ss_pred CCeEEEEEEec
Q psy10918 168 DYGTLICWGSN 178 (207)
Q Consensus 168 ~~g~y~C~~~n 178 (207)
|+|.|.|...+
T Consensus 83 Dsg~YyCa~~~ 93 (107)
T cd07700 83 DSGTYFCMTVG 93 (107)
T ss_pred HCEEEEEeEcC
Confidence 99999999864
No 302
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.35 E-value=7.6e-06 Score=47.96 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEe--ecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
++.+.|.|.+.|. |+++.+.|.+++............. .++.........+...+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 5689999999996 5557999999985322221111222 233333333334555688999999998654
No 303
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.34 E-value=1e-05 Score=47.42 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=45.1
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEee--cCceEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILR--SGTLSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.|+.++|.|.+.+. |..+.+.|+++|..+........... +++.+......+...+...|+|.+......
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 56789999999996 55679999999887543211112222 333333333344556677999999986544
No 304
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.34 E-value=1.1e-05 Score=48.72 Aligned_cols=39 Identities=15% Similarity=-0.014 Sum_probs=28.8
Q ss_pred ceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 155 TLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 155 ~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
+...|.|.+++.+|+|.|.|.+....... ...+.+.+.+
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~--~~~v~L~V~g 108 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDE--QDTVPLEVTG 108 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCccc--EEEEEEEEEE
Confidence 35679999999999999999999855444 4445444443
No 305
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.33 E-value=1.1e-05 Score=47.33 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=40.5
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCcccccccc-CCe-EecCCeEEE---EecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA-QGI-IMTNQSLVL---QRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~-~~~-~~~~~~l~i---~~~~~~d~g~Y~C~~~~~ 82 (207)
..|+.++|.|.+.+ +|....+.|++||..+..... ... ...++++.+ ..+...+...|.|.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 46888999999988 465568999999988765311 111 111222221 123345667899998864
No 306
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.32 E-value=1.2e-05 Score=47.73 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.7
Q ss_pred eEEEEEecCCCCCCeEEEEEEec-CCCCC
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSN-KIGHQ 183 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n-~~g~~ 183 (207)
...|.|.+++.+|+|.|.|.+.+ +.|..
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~ 91 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNF 91 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCe
Confidence 45699999999999999999998 45554
No 307
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.32 E-value=4.8e-06 Score=48.96 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=43.4
Q ss_pred eeeCCcEEEEEEeccC--CCCceEEEEEcCceee-eccceeEEeecCce---EEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 111 VARQEKVNISCEVDAN--PPDVKFSWTFNNSAET-VNVAQAHILRSGTL---SVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
+..|+.++|.|.+.+. |+.+.++|.++++... ..........+++. +.|.+..-.+.+.-.|+|.+.....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 4567899999999998 6678999999875321 11111112223332 2344433333345679999998654
No 308
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.31 E-value=7.6e-06 Score=50.12 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=47.7
Q ss_pred eeeeeeCCcEEEEEEeccCCCCceEEEEEcCc--eeeec-----------cceeEEe--ecCceEEEEEecCCCCCCeEE
Q psy10918 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNS--AETVN-----------VAQAHIL--RSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~~~g~y 172 (207)
...+..|+.+.|.|..........+.|++... ....- ..+..+. .......|.|.+++.+|+|.|
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 34567999999999987543334899998421 11100 0112222 123456799999999999999
Q ss_pred EEEEecC
Q psy10918 173 ICWGSNK 179 (207)
Q Consensus 173 ~C~~~n~ 179 (207)
.|.+...
T Consensus 88 ~C~~~~~ 94 (116)
T cd07706 88 FCALSTL 94 (116)
T ss_pred EEEEECC
Confidence 9999853
No 309
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.29 E-value=2.5e-05 Score=47.34 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=28.0
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
...|.|.+++.+|+|.|.|.+.+........+.+.|
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V 113 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV 113 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence 467999999999999999999987665544444433
No 310
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.28 E-value=1.6e-05 Score=47.03 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=26.8
Q ss_pred EEEEEecCCCCCCeEEEEEEec-CCCCCccceEEE
Q psy10918 157 SVVAYSPNSELDYGTLICWGSN-KIGHQRVPCVFH 190 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n-~~g~~~~~~~~~ 190 (207)
..|.|.+++.+|.|.|.|.+.+ +.|..+..+.|.
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~ 97 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLT 97 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 5689999999999999999999 567654444443
No 311
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.28 E-value=4.2e-06 Score=48.99 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=43.3
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc--eeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA--QAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+..+.|.|.+.+. |..+.+.|.++|..+..... ......++. .+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 34568999999995 55689999999876422211 111222232 233445444444667999999986543
No 312
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.27 E-value=3.5e-06 Score=49.46 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=43.8
Q ss_pred eeeCCcEEEEEEeccC--CCCceEEEEEcCceeeeccceeEEeecCce---EEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 111 VARQEKVNISCEVDAN--PPDVKFSWTFNNSAETVNVAQAHILRSGTL---SVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...+..++|.|.+.+. |.++.+.|.++|.. ...........++.. +.|.+..-.+.....|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3457789999999985 45689999998875 111111112223433 3455544344555679999998764
No 313
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.26 E-value=7.8e-06 Score=46.83 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=44.3
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEE--eecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHI--LRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+..+.|.|.+.+. |..+.+.|++++..+......... ..++..+......+...+...|+|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCC
Confidence 47899999999985 557799999998765433222222 2344433222223336667789999997654
No 314
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.26 E-value=4.3e-06 Score=49.63 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=42.9
Q ss_pred cccCCCcEEEEeEecc-CCCCcEEEEEECCccccccccC-C-eEecCC------eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 16 HIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ-G-IIMTNQ------SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~-~-~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
....++.++|.|.+.+ +|....+.|++||..+...... . ....++ .|.+......+...|.|.+.+..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 3445778999999987 4645689999999987532111 1 111122 24444444445679999998643
No 315
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.26 E-value=9e-06 Score=45.56 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=37.9
Q ss_pred EEEEeEeccC-CCCcEEEEEECCccccccccC-CeE-ecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 23 VYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQ-GII-MTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 23 v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~-~~~-~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
++|.|.+.+. |...++.|++||.++...... ... ..+ +.|.|......+...|+|.+.+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999885 554589999999864432111 111 112 23555554556778999999754
No 316
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.25 E-value=1.1e-05 Score=48.40 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=44.5
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCce----eee----cc-------------ceeEEeecCceEEEEEecCCCCCC
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSA----ETV----NV-------------AQAHILRSGTLSVVAYSPNSELDY 169 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~----~~~----~~-------------~~~~~~~~~~~~~l~i~~~~~~~~ 169 (207)
+..|+.++|.|........ .+.|++.... ... .. .+...........|.|.+++.+|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 4689999999988654343 8999984322 100 00 011112233456799999999999
Q ss_pred eEEEEEEec
Q psy10918 170 GTLICWGSN 178 (207)
Q Consensus 170 g~y~C~~~n 178 (207)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999874
No 317
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.24 E-value=4.6e-06 Score=45.63 Aligned_cols=60 Identities=28% Similarity=0.569 Sum_probs=42.5
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccc------cCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNI------AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
+.|.|.+.+.+.. .+.|++++....... ..........|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPP-TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCC-cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4689999885554 999999876654322 11122333569999999999999999997654
No 318
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.22 E-value=2.3e-05 Score=44.47 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=46.1
Q ss_pred CCcccCCCcEEEEeEeccCCC-CcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEee
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPP-VYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
...+..|++++|+|.....+. ...++|...+..... .....+.+|.+..+...|+|.++|.+..
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----~~~~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----ILNQDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----eccCCccEEEeceeCcccCCEEEEEEEE
Confidence 345778999999999855322 238999875543221 1113457899999999999999999963
No 319
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.21 E-value=1.7e-05 Score=48.63 Aligned_cols=69 Identities=16% Similarity=0.331 Sum_probs=44.1
Q ss_pred cCCCcccCCCcEEEEeEeccCC--CCcEEEEEECC--c-c--c---cc---------cccCCeEe---c-CC--eEEEEe
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNN--K-T--L---HH---------NIAQGIIM---T-NQ--SLVLQR 66 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~--~~~~i~W~~~~--~-~--~---~~---------~~~~~~~~---~-~~--~l~i~~ 66 (207)
+....+.+|++++|.|...... .. .+.||+-. . + + .. ....++.. . .. .|+|.+
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~-~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSY-GVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccc-eEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 3456678899999999875432 23 68999832 1 1 1 00 00112211 1 12 599999
Q ss_pred cCCCCCeeeEEEEee
Q psy10918 67 VNRQSAGNYTCVGFN 81 (207)
Q Consensus 67 ~~~~d~g~Y~C~~~~ 81 (207)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998763
No 320
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.20 E-value=3.1e-05 Score=45.14 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=44.6
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEee--cCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILR--SGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.|....|.|.+.+. |..+.+.|.+||..+. ......... +++........+...+...|.|.+....
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 45667899999995 6678999999998765 433222333 3333333333455667788999999754
No 321
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.20 E-value=1.9e-05 Score=49.98 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=39.7
Q ss_pred cCCCcEEEEeEeccC-CCCcEEEEEECCccccc------ccc--CCeEecC------CeEEEEecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHH------NIA--QGIIMTN------QSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~------~~~--~~~~~~~------~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.+|+.+.|.|.+.+. |...+|.|++++..... ... ......+ +.|.+......+.+.|.|.+.+.
T Consensus 51 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 51 MIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred ecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 368889999999885 44348999999854221 000 0011112 23555554445577999999754
No 322
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.19 E-value=1.9e-05 Score=45.88 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=43.7
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEee-cCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILR-SGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
|+.+.+.|.+.+..|++.+.|+.++.............. .+. .+.|.+......+...|+|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 569999997776544459999999877621111111112 222 345777655566778999999987543
No 323
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.19 E-value=1.2e-05 Score=49.45 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=44.6
Q ss_pred cCCCcccCCCcEEEEeEeccCC-----CCcEEEEEECCcc------cc--c-------cccCCeEe----c--CCeEEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAVP-----PVYKVEWRHNNKT------LH--H-------NIAQGIIM----T--NQSLVLQ 65 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~~-----~~~~i~W~~~~~~------~~--~-------~~~~~~~~----~--~~~l~i~ 65 (207)
+....+.+|++|+|.|...... ....+.||+.... +. . ....++.. . +..|+|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4456778899999999864321 1226899985321 10 0 00012211 1 2359999
Q ss_pred ecCCCCCeeeEEEEee
Q psy10918 66 RVNRQSAGNYTCVGFN 81 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~ 81 (207)
+++..|+|.|.|.+..
T Consensus 86 ~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 86 DAQPEDSGKYFFRVEL 101 (119)
T ss_pred cCChhhCeEEEEEEEc
Confidence 9999999999999864
No 324
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.18 E-value=2.5e-05 Score=45.67 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEE--eecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 114 QEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHI--LRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 114 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+...+|.|.+.|+ |..+.+.|.++|..+......... ..+++........+...+...|+|.+....
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 4567999999995 667899999998875432221122 223332222222333456678999998754
No 325
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.18 E-value=1.6e-05 Score=48.04 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=41.2
Q ss_pred cccCCCcEEEEeEeccC-CCCcEEEEEECCccccccccCCeE-ec------CCeEEEEecCCCCCe-eeEEEEeeeC
Q psy10918 16 HIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIAQGII-MT------NQSLVLQRVNRQSAG-NYTCVGFNIE 83 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~~~~~-~~------~~~l~i~~~~~~d~g-~Y~C~~~~~~ 83 (207)
++..|+.++|.|.+.+. |....++|++||..+......... .+ .+.|.+.. ...|.+ .|.|.+.+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 34568889999999874 544599999999987642211111 11 12244443 334434 5999998653
No 326
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.17 E-value=5e-05 Score=44.30 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=41.9
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCCeE-ecCCeEEEE---ecCCCCCeeeEEEEeee
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQGII-MTNQSLVLQ---RVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~l~i~---~~~~~d~g~Y~C~~~~~ 82 (207)
..|...+|.|.+.+ +|....++|++||..+......... ..+.++.+. .+...+...|.|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 34677799999988 5666689999999887621111111 222333332 34567788999999863
No 327
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.17 E-value=9.4e-05 Score=48.14 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=47.2
Q ss_pred eeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeecc-----------ceeE-EeecCceEEEEEecCCCCCCeEEEEE
Q psy10918 109 LGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNV-----------AQAH-ILRSGTLSVVAYSPNSELDYGTLICW 175 (207)
Q Consensus 109 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~-----------~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~ 175 (207)
..+.+|+++.|.|... +...+ .+.|+|.......-. .+.. +......+.|.|.+++.+|+|.|.|.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~-qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSI-LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccc-eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 4567899999999975 43444 999998643221100 1111 12222356799999999999999999
Q ss_pred EecC
Q psy10918 176 GSNK 179 (207)
Q Consensus 176 ~~n~ 179 (207)
...-
T Consensus 104 F~tf 107 (189)
T PHA02987 104 FNTL 107 (189)
T ss_pred EEec
Confidence 9864
No 328
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.17 E-value=1.1e-05 Score=47.37 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=39.9
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccceeEEeecCce-EEEEEecCCCC-CCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQAHILRSGTL-SVVAYSPNSEL-DYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~-~~g~y~C~~~n~~ 180 (207)
.+..++|.|.+.+. |..+.+.|.++|.....+........++.. .......+... ....|+|.+....
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 45678999999995 667899999998764332221222223322 11111223333 3345999999743
No 329
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.17 E-value=3.8e-05 Score=45.00 Aligned_cols=64 Identities=14% Similarity=0.320 Sum_probs=39.3
Q ss_pred CCcEEEEeEeccC-CCCcEEEEEECCccccccc-cCCeE-ecCCeEE---EEecCCCCCeeeEEEEeeeC
Q psy10918 20 DSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNI-AQGII-MTNQSLV---LQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 20 g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~-~~~~~-~~~~~l~---i~~~~~~d~g~Y~C~~~~~~ 83 (207)
|+.++|.|.+.+. |....++|++++..+.... ..... ..++++. ...+...+.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999984 6555899999986332211 11111 1222222 22344458899999998653
No 330
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.16 E-value=8.6e-06 Score=49.43 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=44.9
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccce--eEEeec-Cc---eEEEEEecCCCCC-CeEEEEEEecCCCCCc
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVAQ--AHILRS-GT---LSVVAYSPNSELD-YGTLICWGSNKIGHQR 184 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~--~~~~~~-~~---~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 184 (207)
.+..++|.|.+.+. |..+.+.|++|+..+...... .....+ +. .+.|.+...+..+ ...|+|.+........
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 45678999999996 445799999998765422111 111111 22 2345554443333 5689999998765554
Q ss_pred cc
Q psy10918 185 VP 186 (207)
Q Consensus 185 ~~ 186 (207)
..
T Consensus 97 ~~ 98 (115)
T cd05769 97 DK 98 (115)
T ss_pred ee
Confidence 33
No 331
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.14 E-value=3e-05 Score=47.07 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=47.4
Q ss_pred eeeeeeCCcEEEEEEec-cCCCCceEEEEEcCc---eeeec---cc------------eeEEeec--CceEEEEEecCCC
Q psy10918 108 VLGVARQEKVNISCEVD-ANPPDVKFSWTFNNS---AETVN---VA------------QAHILRS--GTLSVVAYSPNSE 166 (207)
Q Consensus 108 ~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~---~~~~~---~~------------~~~~~~~--~~~~~l~i~~~~~ 166 (207)
...+.+|+++.|.|... .... ..+.|++... ...+. .. +.....+ .....|.|.+++.
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~-~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQ-SSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSG-SEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred eEEEecCCCEEEEEEEeCCCCc-ceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 34567999999999998 3334 3999998433 11110 00 0111111 2356799999999
Q ss_pred CCCeEEEEEEecC
Q psy10918 167 LDYGTLICWGSNK 179 (207)
Q Consensus 167 ~~~g~y~C~~~n~ 179 (207)
+|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999976
No 332
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.14 E-value=4e-05 Score=43.46 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=44.7
Q ss_pred eeeeCCcEEEEEEeccCCC-CceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecC
Q psy10918 110 GVARQEKVNISCEVDANPP-DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 179 (207)
.+..|++++|+|.....+. .+.+.|...+...- .....+...|.+.+++..|+|.++|.++-.
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 4678999999999976432 24899986543311 111233456889999999999999999743
No 333
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.14 E-value=5.4e-06 Score=49.68 Aligned_cols=64 Identities=14% Similarity=0.297 Sum_probs=41.9
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCcc----c---c---cc-c---------cCCeEe----cCCeEEEEecCCCC
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKT----L---H---HN-I---------AQGIIM----TNQSLVLQRVNRQS 71 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~----~---~---~~-~---------~~~~~~----~~~~l~i~~~~~~d 71 (207)
.+.+|++|+|.|........ .+.||+.... + . .. . ..++.. ....|+|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 36789999999998654333 7999984421 1 0 00 0 011111 11249999999999
Q ss_pred CeeeEEEEe
Q psy10918 72 AGNYTCVGF 80 (207)
Q Consensus 72 ~g~Y~C~~~ 80 (207)
+|.|.|.+.
T Consensus 81 sgtY~Ca~~ 89 (104)
T cd05720 81 EGYYFCSVA 89 (104)
T ss_pred CEEEEEEEc
Confidence 999999875
No 334
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.12 E-value=1.6e-05 Score=43.34 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=42.2
Q ss_pred EEEEEEeccCCCCceEEEEEcCceeeeccce---eEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQ---AHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 117 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+.|.|.+.+.+. ..+.|++++......... ...........|.+.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPP-PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCC-CcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999988444 499999976553322110 011112234568888999999999999998865
No 335
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.10 E-value=4.2e-05 Score=44.74 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=38.7
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCccccccccC-CeE-ecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQ-GII-MTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~-~~~-~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.|+..+|.|.+.+ +|....++|.+||..+...... ... ..++ .|.+. ..+...|.|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 4666899999988 5666689999999887542110 011 1112 24333 34566899999754
No 336
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.09 E-value=4.5e-05 Score=44.66 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=44.9
Q ss_pred cEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEE
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~ 190 (207)
...+.|.+.+..|+..|.|+++..... ........++. .+.|.+......|...|+|.+.+..........+.
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~--~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNA--NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCe--eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 578999888654445999998722110 11111222333 34677766666777899999999876554444443
No 337
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.09 E-value=2e-05 Score=46.93 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=40.2
Q ss_pred ccCCCcEEEEeEecc-CCCCcEEEEEECCcccccccc--CCeEec---CCe------EEEEecCCCCCeeeEEEEeee
Q psy10918 17 IKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGIIMT---NQS------LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 17 v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~---~~~------l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
+..|..++|.|.+.+ +|....+.|+++|..+..... .....+ +++ |.+..-...+...|.|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 345778999999988 455558899999987653210 011111 122 444333234556899999864
No 338
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.09 E-value=1e-05 Score=48.13 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=42.2
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEee----cCc---eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILR----SGT---LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~----~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
.+..++|.|.+.|. |..+.+.|+++|..+..... ...... +++ .+.|.+..-...+...|+|.+.....
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 46789999999996 55678999999876432110 111111 233 23354543333456789999997553
No 339
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.08 E-value=1.9e-05 Score=46.22 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCcccccccc--CCeEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+ +|....++|+++|..+..... ......++ .|.+......+...|.|.+.+.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 4566899999988 466568999999988643211 11111122 2444433334567999999864
No 340
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.07 E-value=0.00011 Score=43.12 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=41.4
Q ss_pred cEEEEEEeccCCCCceEEEEEcCc--eeeecc--------------ceeEEee-cCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 116 KVNISCEVDANPPDVKFSWTFNNS--AETVNV--------------AQAHILR-SGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 116 ~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~--------------~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
.++|.|..........+.|.|... ...+.. .+..... ......|.|.+++.+|.|.|+|.+.+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 578888876443334888988532 111000 0111110 11235689999999999999999986
Q ss_pred C-CCCCc
Q psy10918 179 K-IGHQR 184 (207)
Q Consensus 179 ~-~g~~~ 184 (207)
- .|...
T Consensus 82 ~P~g~~~ 88 (96)
T cd05889 82 YPQGSWE 88 (96)
T ss_pred CCCCCeE
Confidence 4 45543
No 341
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.06 E-value=2.4e-05 Score=47.50 Aligned_cols=68 Identities=16% Similarity=0.327 Sum_probs=41.6
Q ss_pred cccCCCcEEEEeEeccC-CCCcEEEEEECCcccccccc---CCe------EecCCeEEEEecCCCC-CeeeEEEEeeeC
Q psy10918 16 HIKEDSDVYFDCDIVAV-PPVYKVEWRHNNKTLHHNIA---QGI------IMTNQSLVLQRVNRQS-AGNYTCVGFNIE 83 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~-~~~~~i~W~~~~~~~~~~~~---~~~------~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~ 83 (207)
++..++.++|.|.+.+. |....+.|++|+..+..... ... ....+.|.+......+ ...|.|.+....
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 33456779999999874 55568999999987764211 011 1111234444433323 568999998653
No 342
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.04 E-value=2.8e-05 Score=41.67 Aligned_cols=60 Identities=22% Similarity=0.500 Sum_probs=41.5
Q ss_pred CCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 20 DSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 20 g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
.+.|.|+|.+. . +|.|++ |..+.. ..+.+|.|.....+..|.|.|.+.+ ......|.|++
T Consensus 6 ~~~V~L~C~~~----t-si~W~k-G~~~~~-------~~~~tlnLGs~~~DPRG~Y~C~~s~-----~~~~~~LQVyY 65 (69)
T cd07691 6 EGKVFLKCNGA----T-NITWKK-GKEILE-------VSNTLLDLGSRINDPRGTYSCKESE-----PNKEKTLQVYY 65 (69)
T ss_pred CceEEEEecCC----C-cEEEec-Cccccc-------ccccEEeccCcccCCCcceEecCcc-----CCCcEEEEEEE
Confidence 45799999752 3 799999 554432 1156788888889999999998865 12334466653
No 343
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.03 E-value=9.2e-05 Score=45.53 Aligned_cols=74 Identities=14% Similarity=0.059 Sum_probs=46.8
Q ss_pred CceeeeeeCCcEEEEEEeccCC-----CCceEEEEEcCcee-----ee-cc----------ceeEE--eecCceEEEEEe
Q psy10918 106 QRVLGVARQEKVNISCEVDANP-----PDVKFSWTFNNSAE-----TV-NV----------AQAHI--LRSGTLSVVAYS 162 (207)
Q Consensus 106 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~~-----~~-~~----------~~~~~--~~~~~~~~l~i~ 162 (207)
+....+..|+.++|.|...... ....+.|++..... .. .. .+... ........|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3344678999999999765321 12479999853211 00 00 01111 112335679999
Q ss_pred cCCCCCCeEEEEEEecC
Q psy10918 163 PNSELDYGTLICWGSNK 179 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~ 179 (207)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998763
No 344
>KOG1480|consensus
Probab=98.01 E-value=2.6e-06 Score=65.99 Aligned_cols=185 Identities=14% Similarity=0.255 Sum_probs=97.5
Q ss_pred eeeeeeecCCCcccCCCcEEEEeEeccCCCCc---EEEEEECCccccc---cccCCeEecCCeEEEEecCCCCCe---ee
Q psy10918 5 RLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVY---KVEWRHNNKTLHH---NIAQGIIMTNQSLVLQRVNRQSAG---NY 75 (207)
Q Consensus 5 ~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~---~i~W~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g---~Y 75 (207)
.+.|...+.+..+..|.++.|.|.+...+... +-.|......... ............+.|...+.++.+ .|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 34556667788888899999999976544320 1124433222111 000011111122444444444433 56
Q ss_pred EEE--EeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEec-cCCCCceEEEEEcCceeeeccceeEEee
Q psy10918 76 TCV--GFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVD-ANPPDVKFSWTFNNSAETVNVAQAHILR 152 (207)
Q Consensus 76 ~C~--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 152 (207)
.|. +....|...++...+.+.+........+....+..+..+.+.|... +.|.. .+.|++++..... ..+.....
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paa-e~~w~k~e~~~~p-d~n~~~~~ 181 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKA-EVEWLKNEVVIDP-DANVIRAS 181 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhh-hhhccccCCCCCc-cccchhhh
Confidence 654 4444443322222111111111111223333455667778877665 45554 9999998876543 22222333
Q ss_pred cCceEEEEEecCCCCCCeEEEEEEecCCCCC-ccceEEEEeec
Q psy10918 153 SGTLSVVAYSPNSELDYGTLICWGSNKIGHQ-RVPCVFHIVSA 194 (207)
Q Consensus 153 ~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~~~v~~~ 194 (207)
+.+ +.+......|.|+|+|.|.|..+.. .-.+.+.+.+.
T Consensus 182 d~~---li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~ 221 (909)
T KOG1480|consen 182 DHN---LIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVN 221 (909)
T ss_pred cCC---ccccchhhhhcccceeeeehhhccccccceEEEEEEc
Confidence 333 7778899999999999999987654 33444444443
No 345
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.00 E-value=0.0001 Score=43.22 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=26.2
Q ss_pred cccCCCcEEEEeEecc-CCCCcEEEEEECCccccc
Q psy10918 16 HIKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHH 49 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~ 49 (207)
++..+..++|.|.+.+ +|....++|.+||..+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 3344667899999988 566668999999987654
No 346
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.96 E-value=3.3e-05 Score=41.16 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=35.2
Q ss_pred cCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
+.|.+|+|+|.... . .+.|.+++..+... +..+.+.+-. ++.|.|.|.+.
T Consensus 5 isGTtVtlTCP~~~---~-~i~W~~n~~~~~g~--------~~~~~~~~~~-e~~G~Y~C~~~ 54 (65)
T cd07692 5 ISGTTVTVTCPLSG---D-DIKWKKNDQVSQGS--------DEKYLSLNHF-SSSGYYHCTAD 54 (65)
T ss_pred EeccEEEEECCCCC---C-CceEEeCCccCCCC--------CceEEeeccC-CCCceEEEEeC
Confidence 46899999998542 2 48999998555432 2234444555 88999999985
No 347
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.95 E-value=2.5e-05 Score=45.94 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=40.0
Q ss_pred CcccCCCcEEEEeEeccC--CCCcEEEEEECCccccc-cccCCeEecCCe------EEEEecCCCCCeeeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVAV--PPVYKVEWRHNNKTLHH-NIAQGIIMTNQS------LVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~--~~~~~i~W~~~~~~~~~-~~~~~~~~~~~~------l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..+..|+.++|.|.+.+. |....++|.|++..... .........+++ |.+..-...+.-.|.|.+.+.
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence 345568899999999877 66668999998743321 111111122233 333332223455899998765
No 348
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.94 E-value=8e-05 Score=42.59 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=41.2
Q ss_pred cCCCcEEEEeEecc-CCCCcEEEEEECCccccccccCC-eE-ecCC------eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 18 KEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG-II-MTNQ------SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 18 ~~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~~~-~~-~~~~------~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
..++.++|.|.+.+ +|....+.|++++..+....... .. ..++ .|.+. ..+...|.|.+.+..
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 44888999999987 46566899999998876432111 11 1222 24444 556668999997643
No 349
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.88 E-value=0.00025 Score=41.60 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=41.9
Q ss_pred CcEEEEEEecc-CCCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 115 EKVNISCEVDA-NPPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 115 ~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+.|.+.+ .|++ .|.|+++..... ........++. .+.|.+......+...|+|.+.|..-.....
T Consensus 16 ~~~va~C~s~~gkP~a-~ItW~~~~~~~~--~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 16 PVTVATCVSANGKPPA-TISWETTLGGEA--ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred ccEEEEEECCCCcCCC-EEEEEeCCCCcc--eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 46788999965 4555 999998621110 01111222332 3467776666667779999999987544333
No 350
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.87 E-value=5.8e-05 Score=43.78 Aligned_cols=63 Identities=16% Similarity=0.381 Sum_probs=40.8
Q ss_pred CCcEEEEeEecc-CCCCcEEEEEECCccccccc-------cCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 20 DSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNI-------AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 20 g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
|+.+.+.|.+.+ +|.+ .|.|+.++..+.... ........+.|.+......+...++|.+.+..
T Consensus 14 ~~~~~~~C~s~~~~P~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPP-QITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEEEBS-E-EEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred ceEEEEEEEeCCeECCe-EEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence 678999998754 6666 999999998772110 11111122356666555567779999998754
No 351
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.85 E-value=9.2e-05 Score=43.45 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=41.4
Q ss_pred eCCcEEEEEEeccC-CCCceEEEEEcCceeeeccc-eeEEee-cCce---EEEEEecCCCCCCeEEEEEEecCC
Q psy10918 113 RQEKVNISCEVDAN-PPDVKFSWTFNNSAETVNVA-QAHILR-SGTL---SVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 113 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~-~~~~---~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.++.+.|.|.+.++ |..+.+.|.++|.. ..... ...... ++.. +.|.+..........|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 35678999999996 66779999999886 22211 111222 3332 334444433334667999999854
No 352
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.85 E-value=0.00022 Score=43.71 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=45.3
Q ss_pred ceeeeeeCCcEEEEEEeccCC-CCceEEEEEcCc--eee-e---c------------cceeEEeecC--ceEEEEEecCC
Q psy10918 107 RVLGVARQEKVNISCEVDANP-PDVKFSWTFNNS--AET-V---N------------VAQAHILRSG--TLSVVAYSPNS 165 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~--~~~-~---~------------~~~~~~~~~~--~~~~l~i~~~~ 165 (207)
....+.+|+.++|.|...... ....+.|++... ... + . ..+.....+. ....|.|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 334567899999999876432 223799998432 110 0 0 0111121122 23469999999
Q ss_pred CCCCeEEEEEEec
Q psy10918 166 ELDYGTLICWGSN 178 (207)
Q Consensus 166 ~~~~g~y~C~~~n 178 (207)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999999875
No 353
>PHA03376 BARF1; Provisional
Probab=97.82 E-value=0.00063 Score=44.40 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=46.9
Q ss_pred eeeeCCcEEEEEEeccC--CCCceEEEEEcCc----eeeecc------------ceeEEeecCceEEEEEecCCCCCCeE
Q psy10918 110 GVARQEKVNISCEVDAN--PPDVKFSWTFNNS----AETVNV------------AQAHILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~----~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
....|+.+.|.|..... -+...|.|+|.+. ..-... ....+..+.+...|.|.+++.+|.|.
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt 101 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 101 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence 35689999999977622 2346999999432 111100 11223333455678999999999999
Q ss_pred EEEEEecCC
Q psy10918 172 LICWGSNKI 180 (207)
Q Consensus 172 y~C~~~n~~ 180 (207)
|+|......
T Consensus 102 Y~C~fQkge 110 (221)
T PHA03376 102 YLCRMKLGE 110 (221)
T ss_pred EEEEEEcCC
Confidence 999998654
No 354
>KOG1480|consensus
Probab=97.81 E-value=2.1e-05 Score=61.20 Aligned_cols=91 Identities=22% Similarity=0.369 Sum_probs=66.6
Q ss_pred eeeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCc
Q psy10918 8 LGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGE 87 (207)
Q Consensus 8 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 87 (207)
+.+++.-..|..+..+.+.|......+...+.|++++..+.. +..........+.+..++..|.|+|+|++.|..+...
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCc-cccchhhhcCCccccchhhhhcccceeeeehhhcccc
Confidence 344555567778888899998755444448999999987766 3333334456799999999999999999999888777
Q ss_pred cceEEEEEEeCC
Q psy10918 88 SNAFFLNVMYSP 99 (207)
Q Consensus 88 ~~~~~l~v~~~~ 99 (207)
...+.+.+....
T Consensus 211 ~~~~~v~vyv~g 222 (909)
T KOG1480|consen 211 SDPATVQVYVNG 222 (909)
T ss_pred ccceEEEEEEcC
Confidence 666666666443
No 355
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.77 E-value=0.0002 Score=41.90 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=41.1
Q ss_pred CcccCCCcEEE-EeEeccCCCCcEEEEEECCccccc----cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 15 DHIKEDSDVYF-DCDIVAVPPVYKVEWRHNNKTLHH----NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 15 ~~v~~g~~v~l-~C~~~~~~~~~~i~W~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
..+.+|+.+.+ .|.+.+..++.+|+|+.+...... .+......-.+.+.+...+..|...+.|.+.+..
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 34556777887 888855433449999986433221 0111111122346666666677789999998653
No 356
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.74 E-value=0.00022 Score=40.35 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=19.6
Q ss_pred CceEEEEEecCCCCCCeEEEEEE
Q psy10918 154 GTLSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 154 ~~~~~l~i~~~~~~~~g~y~C~~ 176 (207)
.....|.|.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 44567999999999999999964
No 357
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.73 E-value=0.001 Score=38.99 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=44.4
Q ss_pred eeeeCCcEEE-EEEeccCCCCceEEEEEcCceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCC
Q psy10918 110 GVARQEKVNI-SCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGH 182 (207)
Q Consensus 110 ~~~~g~~~~l-~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~ 182 (207)
.+.+|..+.+ .|.+.+..|+..|.|+.+..... ........+++ .+.+.+...+..|...++|.+.+..-.
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~--~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS--ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCcc--ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 4557788888 88887654445999997643321 11111222333 345666666667888999999987543
No 358
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.68 E-value=0.00014 Score=41.14 Aligned_cols=58 Identities=19% Similarity=0.394 Sum_probs=35.2
Q ss_pred cEEEEeEeccCCCC-cEEEEEECCc--cc---cc-----------cccCCeEe--c----CCeEEEEecCCCCCeeeEEE
Q psy10918 22 DVYFDCDIVAVPPV-YKVEWRHNNK--TL---HH-----------NIAQGIIM--T----NQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 22 ~v~l~C~~~~~~~~-~~i~W~~~~~--~~---~~-----------~~~~~~~~--~----~~~l~i~~~~~~d~g~Y~C~ 78 (207)
++.|.|........ ..+.|++... .+ .. ....++.. . ..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899988654432 3788998542 11 00 00111111 1 13599999999999999996
Q ss_pred E
Q psy10918 79 G 79 (207)
Q Consensus 79 ~ 79 (207)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 359
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.64 E-value=0.00059 Score=39.98 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=39.3
Q ss_pred cccCCCc--EEEEeEeccCCCCcEEEEEECCccccccc----cCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 16 HIKEDSD--VYFDCDIVAVPPVYKVEWRHNNKTLHHNI----AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 16 ~v~~g~~--v~l~C~~~~~~~~~~i~W~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
++..|.. +.+.|.+.+..++.+|+|+++........ ........+.|.+.....+|...|.|.+.+...
T Consensus 9 ~~~~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 9 EVSAGTIPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred EeecCCCccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 3444444 78999886543344999999732111100 001111123466666566677799999997643
No 360
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.63 E-value=0.00027 Score=41.58 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=38.8
Q ss_pred CcccCCCcEEEEeEecc-C-CCCcEEEEEECCccccccccCCeEecCC------eEEEEecCCCCCeeeEEEEeeeC
Q psy10918 15 DHIKEDSDVYFDCDIVA-V-PPVYKVEWRHNNKTLHHNIAQGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~-~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.....+..++|.|.+.+ + |....+.|.+++.. ...........++ .|.+..-.......|+|.+.+..
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 33456888999999987 4 54568999999875 2111111111122 24444222233346999987543
No 361
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.61 E-value=0.00027 Score=37.71 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=34.1
Q ss_pred eeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 112 ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..|..++|+|.... . .+.|.+++.... +....+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~---~-~i~W~~n~~~~~-----------g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---D-DIKWKKNDQVSQ-----------GSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---C-CceEEeCCccCC-----------CCCceEEeeccC-CCCceEEEEeCC
Confidence 47889999997653 2 599999875422 111123333444 889999999964
No 362
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.61 E-value=0.00075 Score=39.60 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=36.3
Q ss_pred EEEEeEec-cCCCCcEEEEEECCccccc----cccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 23 VYFDCDIV-AVPPVYKVEWRHNNKTLHH----NIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 23 v~l~C~~~-~~~~~~~i~W~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
..+.|.+. +.|.+ +|.|+++...... ..........+.|.+.....+|...|+|.+.+..-
T Consensus 18 ~va~C~s~~gkP~a-~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 18 TVATCVSANGKPPA-TISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred EEEEEECCCCcCCC-EEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 67899995 55665 9999997211110 00011111123466666666677799999987653
No 363
>PHA02633 hypothetical protein; Provisional
Probab=97.54 E-value=0.00037 Score=36.53 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=29.3
Q ss_pred cCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeC
Q psy10918 58 TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYS 98 (207)
Q Consensus 58 ~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~ 98 (207)
.+..|+|.++..+|+|.|.|...|..-.. ..++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEeec
Confidence 35679999999999999999998654333 44566666643
No 364
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.52 E-value=0.00057 Score=40.11 Aligned_cols=63 Identities=10% Similarity=0.291 Sum_probs=37.8
Q ss_pred CCCcEEEEeEecc-CCCCcEEEEEECCcccccccc--CCeEecCC------eEEEEecCCCCCeeeEEEEeee
Q psy10918 19 EDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIA--QGIIMTNQ------SLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 19 ~g~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
.++.++|.|.+.+ +|....++|++||.. ..... ......++ .|.+..........|.|.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence 4667999999988 466668999999987 32210 11111122 2443433222356799998864
No 365
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.42 E-value=0.0017 Score=39.19 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=43.0
Q ss_pred CCCcccCCCcEEEEeEeccCCCC--cEEEEEECCccc-c--------c----cccCCeE------ecCCeEEEEecCCCC
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTL-H--------H----NIAQGII------MTNQSLVLQRVNRQS 71 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~--~~i~W~~~~~~~-~--------~----~~~~~~~------~~~~~l~i~~~~~~d 71 (207)
....+..|+.+.|.|.+.+.... ..+.|+|..... . . ....++. ....+|+|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 44567789999999999664333 378899832211 0 0 0011111 111259999999999
Q ss_pred CeeeEEEEe
Q psy10918 72 AGNYTCVGF 80 (207)
Q Consensus 72 ~g~Y~C~~~ 80 (207)
.+.|.|...
T Consensus 86 Ta~Y~Ca~e 94 (115)
T cd05721 86 TDIYFCKIE 94 (115)
T ss_pred CeEEEEEee
Confidence 999999753
No 366
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.40 E-value=0.015 Score=43.74 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=70.6
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCC--CCccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEE
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEG--DGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTF 136 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~ 136 (207)
.|.|..++..++|.|.=.+.+... ......+.+.+...|.+.... ..+.+|+...-.|.+..+.+ ...+.|+.
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p---~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG---DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 399999999999999755443221 122345667777777543322 24679999999999988643 46899999
Q ss_pred cCceeeecc--ceeEEeecCce---EEEEEecCCCCC--CeEEEEEEecCC
Q psy10918 137 NNSAETVNV--AQAHILRSGTL---SVVAYSPNSELD--YGTLICWGSNKI 180 (207)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~---~~l~i~~~~~~~--~g~y~C~~~n~~ 180 (207)
|+..+.... .......+|.. ++|.+......+ .=..+|.+.---
T Consensus 367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~R 417 (566)
T PHA03269 367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIR 417 (566)
T ss_pred CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEcc
Confidence 987755322 11233444532 334332111111 234689987543
No 367
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.34 E-value=0.0016 Score=35.10 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=33.8
Q ss_pred CCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEec
Q psy10918 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178 (207)
Q Consensus 114 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n 178 (207)
..++.|.|... . +|.|++ |..+.. .....|.+-....+-.|.|.|.+++
T Consensus 6 ~~~V~L~C~~~----t-si~W~k-G~~~~~----------~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----T-NITWKK-GKEILE----------VSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----C-cEEEec-Cccccc----------ccccEEeccCcccCCCcceEecCcc
Confidence 35789999662 3 799999 543221 1133466767777888999999987
No 368
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.26 E-value=0.0031 Score=36.90 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=41.2
Q ss_pred eeeCCcEEEEEEeccCCC--CceEEEEEcCceeeeccceeEE---eecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 111 VARQEKVNISCEVDANPP--DVKFSWTFNNSAETVNVAQAHI---LRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
...|..+++.|.+.+..+ ...+.|++++..+....-.... ........+.+.....++...|+|.|.=.++
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 468999999999986543 2589998865543322110000 0111224456655444444599999985544
No 369
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.19 E-value=0.0037 Score=36.56 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=40.8
Q ss_pred CcccCCCcEEEEeEecc-CCC-CcEEEEEECCccccccccC------CeEecCCeEEEEecCCCCCe-eeEEEEeee
Q psy10918 15 DHIKEDSDVYFDCDIVA-VPP-VYKVEWRHNNKTLHHNIAQ------GIIMTNQSLVLQRVNRQSAG-NYTCVGFNI 82 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~-~~~-~~~i~W~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~ 82 (207)
..+.+|..+++.|.+.+ +|. ...+.|++....+....-. ........+++... .+|.| .|.|.+.-.
T Consensus 10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred CcccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 34578999999999975 343 1268899866555432100 01112234666664 55555 999998744
No 370
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.05 E-value=0.077 Score=39.49 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCCcccCCCcEEEEeEeccC-CC-CcEEEEEECCccccccccC---CeEecCCeEEEEecCCCCC------eeeEEEEee
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTLHHNIAQ---GIIMTNQSLVLQRVNRQSA------GNYTCVGFN 81 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~------g~Y~C~~~~ 81 (207)
....+.+|+...-.|.+..+ |. ...+.||.|+.++...... .....++...++-++..+. -..+|.+.-
T Consensus 227 ~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W 306 (466)
T PHA03270 227 RPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTW 306 (466)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEE
Confidence 34557789999999999653 32 2479999999988531111 1111122223333343332 277898763
Q ss_pred e-CCCCc---cceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCcee
Q psy10918 82 I-EGDGE---SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAE 141 (207)
Q Consensus 82 ~-~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~ 141 (207)
. ..... +....-.|+.+|.+. ...++.. ..|.+.=-|..+.+.|.-++...
T Consensus 307 ~rd~vS~sR~nAa~~P~VY~~P~Is-------v~F~dG~--AVCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 307 HRDSVSFSRRNATGAPTVLPRPTIE-------MEFGGDE--AVCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred ccCCccceeecccccCccccCCeEE-------EEEeCCE--EEEeccccCCCCEEEEEecCCCC
Confidence 2 22111 222223333333322 1223332 23444333444699998766543
No 371
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.01 E-value=0.0016 Score=40.19 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=40.9
Q ss_pred eCCcEEEEEEeccCC----CCceEEEEEcCceeeecc-ceeEEe---------e--cCceEEEEEecCCCCCCeEEEEEE
Q psy10918 113 RQEKVNISCEVDANP----PDVKFSWTFNNSAETVNV-AQAHIL---------R--SGTLSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 113 ~g~~~~l~C~~~~~~----~~~~~~W~~~~~~~~~~~-~~~~~~---------~--~~~~~~l~i~~~~~~~~g~y~C~~ 176 (207)
=++.+.|.|.+.... ....+.|.+++..+..-. ...... . ..+...|.+...+.- .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 357889999997522 235799999876543211 101110 0 112334777654333 79999999
Q ss_pred ecCCCCCccceEEEEe
Q psy10918 177 SNKIGHQRVPCVFHIV 192 (207)
Q Consensus 177 ~n~~g~~~~~~~~~v~ 192 (207)
.......+....+...
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 8876555555555443
No 372
>PHA02633 hypothetical protein; Provisional
Probab=96.96 E-value=0.0027 Score=33.34 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=27.9
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
-|-|.+...+|+|.|.|..+|..-....+..+.|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3667789999999999999987665555655655543
No 373
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.85 E-value=0.11 Score=38.69 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=56.4
Q ss_pred EEEEecCCCCCeeeEEEEeeeCCC-CccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEEcC
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNIEGD-GESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTFNN 138 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~ 138 (207)
|.|..++...+|.|+=...+..+. ...+.+.+..+.+|.+.... ..+.+|+...-.|.+..+.+ ...+.|+.|+
T Consensus 184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP---HAVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 899999999999999887654442 22334556666677644322 24678999999999987643 4689999998
Q ss_pred ceee
Q psy10918 139 SAET 142 (207)
Q Consensus 139 ~~~~ 142 (207)
....
T Consensus 261 ~~V~ 264 (466)
T PHA03270 261 DEVF 264 (466)
T ss_pred cccc
Confidence 8653
No 374
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.85 E-value=0.024 Score=34.31 Aligned_cols=68 Identities=9% Similarity=-0.035 Sum_probs=43.0
Q ss_pred eeeeCCcEEEEEEeccCCC--CceEEEEEcCce-eeecc-------------cee--EEeecCceEEEEEecCCCCCCeE
Q psy10918 110 GVARQEKVNISCEVDANPP--DVKFSWTFNNSA-ETVNV-------------AQA--HILRSGTLSVVAYSPNSELDYGT 171 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~-~~~~~-------------~~~--~~~~~~~~~~l~i~~~~~~~~g~ 171 (207)
.+..|..+.|.|.+.+..- ...+.|.|.... ++.-. .+. ......+.-.|.+.+++.+|.+.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence 3567788999999977532 247889874222 11100 011 11122334579999999999999
Q ss_pred EEEEEe
Q psy10918 172 LICWGS 177 (207)
Q Consensus 172 y~C~~~ 177 (207)
|.|...
T Consensus 89 Y~Ca~e 94 (115)
T cd05721 89 YFCKIE 94 (115)
T ss_pred EEEEee
Confidence 999764
No 375
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.85 E-value=0.0017 Score=40.05 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=35.0
Q ss_pred cCCCcEEEEeEeccC----CCCcEEEEEECCccccccccC-C-e-------------EecCCeEEEEecCCCCCeeeEEE
Q psy10918 18 KEDSDVYFDCDIVAV----PPVYKVEWRHNNKTLHHNIAQ-G-I-------------IMTNQSLVLQRVNRQSAGNYTCV 78 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~----~~~~~i~W~~~~~~~~~~~~~-~-~-------------~~~~~~l~i~~~~~~d~g~Y~C~ 78 (207)
.-+++|.|+|.+... -....+.|.+++..+..-+.. . . ...+.+|.+...+.- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 457889999998651 112369999988766431111 0 0 011234777775444 8999999
Q ss_pred Eeee
Q psy10918 79 GFNI 82 (207)
Q Consensus 79 ~~~~ 82 (207)
+...
T Consensus 104 Vt~~ 107 (130)
T PF08204_consen 104 VTEL 107 (130)
T ss_dssp EEET
T ss_pred EEec
Confidence 9744
No 376
>PHA02982 hypothetical protein; Provisional
Probab=96.71 E-value=0.011 Score=39.25 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=50.2
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcCce-eee--------c---------cceeEEeecCceEEEEEecCCCCCCeEE
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNNSA-ETV--------N---------VAQAHILRSGTLSVVAYSPNSELDYGTL 172 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~-~~~--------~---------~~~~~~~~~~~~~~l~i~~~~~~~~g~y 172 (207)
...++++.|.|.......-....|+.+... +.. + ........++..++|+|.++..++.|-|
T Consensus 36 a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCY 115 (251)
T PHA02982 36 ATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCF 115 (251)
T ss_pred ccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCce
Confidence 356889999998655444347889864322 110 0 0112355667788999999999999999
Q ss_pred EEEEecCCCCC
Q psy10918 173 ICWGSNKIGHQ 183 (207)
Q Consensus 173 ~C~~~n~~g~~ 183 (207)
+|.+....+..
T Consensus 116 tc~~ks~~~k~ 126 (251)
T PHA02982 116 TCEAKDAEGKE 126 (251)
T ss_pred EEEEecCCCch
Confidence 99999866543
No 377
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.62 E-value=0.0054 Score=42.31 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeC
Q psy10918 34 PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIE 83 (207)
Q Consensus 34 ~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 83 (207)
.| .+.|...+...............+.|.+.+....++|.|+|.+....
T Consensus 12 DP-~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DP-TYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CC-ceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 45 89999865444333344455667789999999999999999998554
No 378
>PHA02982 hypothetical protein; Provisional
Probab=96.49 E-value=0.13 Score=34.42 Aligned_cols=116 Identities=16% Similarity=0.268 Sum_probs=67.3
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECC-ccccccc------------------cCC--eEecCCeEEEEecCCCCCee
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNN-KTLHHNI------------------AQG--IIMTNQSLVLQRVNRQSAGN 74 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~-~~~~~~~------------------~~~--~~~~~~~l~i~~~~~~d~g~ 74 (207)
....++.|.|.|.........+..|+.+. ..+.... ... .....++|+|.++..+..|=
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 34568999999997555444477898743 2332100 000 11234679999999999999
Q ss_pred eEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeee-CCcEEEEEEeccCCCCceEEEEEcCc
Q psy10918 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVAR-QEKVNISCEVDANPPDVKFSWTFNNS 139 (207)
Q Consensus 75 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~~~~~~W~~~~~ 139 (207)
|+|.+....+.......-|.|+...... ...+ .....+.|-+.....+ -..|.-+|-
T Consensus 115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~d-vp~W~V~GV 172 (251)
T PHA02982 115 FTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGD-VPRFIVAGI 172 (251)
T ss_pred eEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCC-CccEEEeeE
Confidence 9999986544433322234443211111 1112 2345778988766554 238887654
No 379
>PHA03042 CD47-like protein; Provisional
Probab=96.42 E-value=0.05 Score=37.89 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=43.7
Q ss_pred CCcEEEEEEeccC----CCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 114 QEKVNISCEVDAN----PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 114 g~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
++.+.+.|.++.- -....+.|.+++........ . +.+.|.+. -...-.|+|+|.|.+..-.......+
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~------t-n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN------T-NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC------C-cceEEEEe-ccccCCCceeEEEeecccCccEEEEE
Confidence 5688999998863 12358999999877542211 1 22446553 44456899999999866544334444
Q ss_pred E
Q psy10918 190 H 190 (207)
Q Consensus 190 ~ 190 (207)
.
T Consensus 103 k 103 (286)
T PHA03042 103 Q 103 (286)
T ss_pred E
Confidence 3
No 380
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.41 E-value=0.25 Score=36.76 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=65.8
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCCCC-ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEEc
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEGDG-ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTFN 137 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~ 137 (207)
.|.|.++.-.++|.|.-...+..... ..+.+.+.+.+.|......+ ..+..|+...-.|.+..+.+ ...+.|+.|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 49999999999996644444332221 12234455554443222222 23678999999999988643 468999999
Q ss_pred Cceeeeccce-eEE-eecC--c---eEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 138 NSAETVNVAQ-AHI-LRSG--T---LSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 138 ~~~~~~~~~~-~~~-~~~~--~---~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
|......... ... ..++ . .+.+.+.+......=..+|.+.-..+
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 8765432211 111 1111 1 23333333222233378999975443
No 381
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.41 E-value=0.27 Score=37.10 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=69.5
Q ss_pred EEEEecCCCCCeeeEEEEeeeCCCC-ccceEEEEEEeCCcccCCCCceeeeeeCCcEEEEEEeccCCC--CceEEEEEcC
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNIEGDG-ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWTFNN 138 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~ 138 (207)
|.|..++...+|.|.=...+..+.. ....+.+....+|.+.... ..+.+|+...-.|.+..+.+ ...+.|+.|+
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV---HPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 9999999999999975443333321 1233444446666644322 24679999999999987643 4689999999
Q ss_pred ceeee-cc--ceeEEeecCc---eEEEEEecCCC-CCCeEEEEEEecCC
Q psy10918 139 SAETV-NV--AQAHILRSGT---LSVVAYSPNSE-LDYGTLICWGSNKI 180 (207)
Q Consensus 139 ~~~~~-~~--~~~~~~~~~~---~~~l~i~~~~~-~~~g~y~C~~~n~~ 180 (207)
..... .. .......++. .++|.+..... ...=..+|.+.-.-
T Consensus 277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 87652 21 1122233343 33444433221 23346899987543
No 382
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.20 E-value=0.0061 Score=35.95 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=30.6
Q ss_pred eEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEE
Q psy10918 55 IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95 (207)
Q Consensus 55 ~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v 95 (207)
+...+-+|.|..++..|+|.|.-++.+..|......+.+.|
T Consensus 66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 44556789999999999999999999888877555555544
No 383
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.97 E-value=0.25 Score=36.83 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=27.8
Q ss_pred CCCcccCCCcEEEEeEeccC-CC-CcEEEEEECCccccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTLHH 49 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~~~ 49 (207)
....+.+|+...-.|.+..+ |+ ...+.|+.||.++..
T Consensus 253 ~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 253 LAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 34557789999999999653 32 347999999988764
No 384
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.88 E-value=0.032 Score=38.65 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=34.8
Q ss_pred ceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCC
Q psy10918 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 130 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
+.+.|...+.....+.+...+...|. |.+.+....++|.|+|..+...
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGK---LMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCce---EEeeccccccCCceEEEEEEEe
Confidence 39999986555433333344544443 8899999999999999998765
No 385
>PHA03042 CD47-like protein; Provisional
Probab=95.85 E-value=0.084 Score=36.82 Aligned_cols=61 Identities=21% Similarity=0.433 Sum_probs=40.1
Q ss_pred CCCcEEEEeEeccC----CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCC
Q psy10918 19 EDSDVYFDCDIVAV----PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEG 84 (207)
Q Consensus 19 ~g~~v~l~C~~~~~----~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 84 (207)
-.+++.++|.+..- -....++|..++..+...+.. ...+|.+... ..-.|+|+|++.+-..
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----n~aSL~~~f~-~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----NTSSLKFNFS-KNLSGNYTCEAINKFN 94 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----cceEEEEecc-ccCCCceeEEEeeccc
Confidence 47889999998652 122369999999877543222 1245666543 4458999999986544
No 386
>PHA03273 envelope glycoprotein C; Provisional
Probab=95.70 E-value=0.65 Score=35.23 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=28.0
Q ss_pred CCCcccCCCcEEEEeEeccC-CC-CcEEEEEECCcccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-PP-VYKVEWRHNNKTLH 48 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~~-~~~i~W~~~~~~~~ 48 (207)
....+.+|+...-.|.+..+ |+ ...+.|+.|+.++.
T Consensus 243 ~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 243 SVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 44567889999999999653 32 34799999999887
No 387
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.59 E-value=0.74 Score=35.18 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.1
Q ss_pred CCCcccCCCcEEEEeEeccC-C-CCcEEEEEECCccccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVAV-P-PVYKVEWRHNNKTLHH 49 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~-~-~~~~i~W~~~~~~~~~ 49 (207)
....+.+|+...-.|.+..+ | ....+.|+.|+.++..
T Consensus 335 ~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 335 IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 34567889999999999653 3 2347999999888874
No 388
>KOG4597|consensus
Probab=95.59 E-value=0.024 Score=42.48 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=56.6
Q ss_pred eeeeCCcEEEEEEeccCCCCceEEEEE---cCceeeeccceeEEe--ecCceEEEEEecCCCCCCeEEEEEEecCCCCCc
Q psy10918 110 GVARQEKVNISCEVDANPPDVKFSWTF---NNSAETVNVAQAHIL--RSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~~~~~~~~W~~---~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 184 (207)
.+-.++...++|-+.|.+.+ .|.|.+ |+..+.+. ....+. .-.+...|.|-+-...|+|.|+|.+.|..|-..
T Consensus 207 ~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred hcccchhhcccccccCCcCc-eeeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 35578899999999999987 999986 33332222 111110 011234578888899999999999999999887
Q ss_pred cceEEEEe
Q psy10918 185 VPCVFHIV 192 (207)
Q Consensus 185 ~~~~~~v~ 192 (207)
+++.+.+.
T Consensus 285 rdv~c~s~ 292 (560)
T KOG4597|consen 285 RDVPCSSV 292 (560)
T ss_pred ccceeeee
Confidence 77766544
No 389
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=95.52 E-value=0.082 Score=38.39 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=18.6
Q ss_pred cEEEEeEecc-CCCCcEEEEEEC
Q psy10918 22 DVYFDCDIVA-VPPVYKVEWRHN 43 (207)
Q Consensus 22 ~v~l~C~~~~-~~~~~~i~W~~~ 43 (207)
.++|.|.+.| +|....+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999988 466668999999
No 390
>KOG0613|consensus
Probab=95.39 E-value=0.064 Score=45.22 Aligned_cols=129 Identities=6% Similarity=-0.083 Sum_probs=73.8
Q ss_pred CeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE----------------eCCcccCCCC--ceeeeeeCCcEEEEE
Q psy10918 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM----------------YSPTCKPHQQ--RVLGVARQEKVNISC 121 (207)
Q Consensus 60 ~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~----------------~~~~~~~~~~--~~~~~~~g~~~~l~C 121 (207)
.+..+.+....+.+.|.|...+..+..... +.-.+. .++..+.... .......+..+.+.|
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~-v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~ 356 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFK-VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT 356 (1205)
T ss_pred ccccccccCCccccceeeecccCCccccee-eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence 345666666677778888776554433221 111111 1111111111 122344667899999
Q ss_pred EeccCCCCceEEEEEcCceeeeccc-eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 122 EVDANPPDVKFSWTFNNSAETVNVA-QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 122 ~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
...+...+-.+.|+.++........ ............+.+......+.+.|.|.|.|..|........
T Consensus 357 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~ 425 (1205)
T KOG0613|consen 357 ALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAES 425 (1205)
T ss_pred cccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchh
Confidence 9999887757999987554322211 1112222233346677888889999999999999876544433
No 391
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.59 E-value=0.16 Score=36.92 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=18.9
Q ss_pred cEEEEEEeccC-CCCceEEEEEc
Q psy10918 116 KVNISCEVDAN-PPDVKFSWTFN 137 (207)
Q Consensus 116 ~~~l~C~~~~~-~~~~~~~W~~~ 137 (207)
.+.|.|.+.|. |..+.+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 47999999996 55679999998
No 392
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.31 E-value=0.48 Score=35.22 Aligned_cols=84 Identities=13% Similarity=0.219 Sum_probs=47.4
Q ss_pred CcccCCCcE-EEEeEeccCCCCcEEEEEECCcccccc--------ccCCe------EecCCeEEEEecCCCCCeeeEEEE
Q psy10918 15 DHIKEDSDV-YFDCDIVAVPPVYKVEWRHNNKTLHHN--------IAQGI------IMTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 15 ~~v~~g~~v-~l~C~~~~~~~~~~i~W~~~~~~~~~~--------~~~~~------~~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
..+..|+.+ .|+|..........+...+.+..-... ..... ....-.+.+.+++..|+|.|+|..
T Consensus 21 Ii~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCIF 100 (500)
T PHA02914 21 IFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCIF 100 (500)
T ss_pred EEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEEE
Confidence 445567775 999998765544467676633221110 00000 011234888899999999999998
Q ss_pred eeeCCCCccceEEEEEEeCCc
Q psy10918 80 FNIEGDGESNAFFLNVMYSPT 100 (207)
Q Consensus 80 ~~~~~~~~~~~~~l~v~~~~~ 100 (207)
...... +....+.|...|.
T Consensus 101 YLn~~E--tyrH~I~vrVmPK 119 (500)
T PHA02914 101 YLGDNE--SHKHEILVRKAPK 119 (500)
T ss_pred EeCCce--eEEEEEEEEEccc
Confidence 743322 3333445544443
No 393
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=94.30 E-value=0.11 Score=30.02 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=38.1
Q ss_pred cCCCcccCCCcEEEEeEeccC----CCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEE
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV----PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVG 79 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~----~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 79 (207)
+....+..|++++..|..... .....+.|..++..++......+....+.+++.+......-.|.|..
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 455677889999999998532 12237999998887665332222111134555555444445666653
No 394
>KOG1026|consensus
Probab=94.21 E-value=0.31 Score=39.54 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=82.0
Q ss_pred CcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 15 ~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
..+..|..+++.|...+.+.+ .+.|+.++............-.+....+.+ +.|.+.|..+.... .+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~-~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVP-CHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNP-SILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCc-ceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCc-eeeeE
Confidence 456678899999999999887 899998776554322111111111111111 78988877765533 34444
Q ss_pred EEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 95 VMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
+..+............ ....+.-.+.+.+.+ ...|..++..+...... .....+..-.+........+.|.|+|
T Consensus 272 ~~~p~~~~~~~~~~~~----~~~C~~~~~~~~~~~-~~~~~~~~~~~~~~g~~-~~t~s~~~~C~~~~~~~h~~~~~~~~ 345 (774)
T KOG1026|consen 272 VDLPKAEVLLCSPLSD----HHNCIPIGITANPGP-ALHWCYNGSGLNYRGTV-CVTKSGKEQCLPWNDPPHSHNGNYTL 345 (774)
T ss_pred EecccccccCCCCccc----cCceeeeeccCCCCC-ceeeeecCccceEeccc-ccccccCcCCcccCcCcccccCccee
Confidence 4433221111111000 111222222355565 78888877664332211 11111100112333335668899999
Q ss_pred EEecCCCCCccceE
Q psy10918 175 WGSNKIGHQRVPCV 188 (207)
Q Consensus 175 ~~~n~~g~~~~~~~ 188 (207)
.+.+..|.......
T Consensus 346 ~~e~~~g~~~~r~~ 359 (774)
T KOG1026|consen 346 FPELPGGKNYCRNP 359 (774)
T ss_pred eecccCccccccCc
Confidence 99999886654433
No 395
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.92 E-value=2 Score=32.15 Aligned_cols=161 Identities=12% Similarity=0.145 Sum_probs=85.6
Q ss_pred CCCcccCCCcEEEEeEecc--CCCCcEEEEEECCccccc-----------------cccC--------CeEecCCeEEEE
Q psy10918 13 NPDHIKEDSDVYFDCDIVA--VPPVYKVEWRHNNKTLHH-----------------NIAQ--------GIIMTNQSLVLQ 65 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~--~~~~~~i~W~~~~~~~~~-----------------~~~~--------~~~~~~~~l~i~ 65 (207)
....+..|..|.|.|.... +....++.|+--+-++.. .... ...+..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3345566999999998753 333347889876544321 0000 011345789999
Q ss_pred ecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCcccCCCCceeeeeeC-CcEEEEEEeccC-CCCceEEEEEcCceeee
Q psy10918 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ-EKVNISCEVDAN-PPDVKFSWTFNNSAETV 143 (207)
Q Consensus 66 ~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~ 143 (207)
++.....|=|.|.+..+.-.. ....-|.|.. .+.. . -..+| ....+.|-+... ..|+.+.|..+|-...-
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~-ec~~Cl~V~d--~V~f---~--W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G 423 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKE-ECRHCFKVAD--HVFF---K--WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGG 423 (500)
T ss_pred eEEEEcCCceEEEEecCcchh-hhhhheEecc--EEEE---E--EEeccCceEEEEEEEEecccCCceeEEEEccEEecC
Confidence 999999999999997542211 1111132221 0000 0 11132 345678877665 45568999987654221
Q ss_pred ccce------eEEeecCceEEEEEecCCCCC-CeEEEEEEecCCC
Q psy10918 144 NVAQ------AHILRSGTLSVVAYSPNSELD-YGTLICWGSNKIG 181 (207)
Q Consensus 144 ~~~~------~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g 181 (207)
.... ..+...-..+.+.|.+-...| -..-.|...-..+
T Consensus 424 ~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 424 EIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred eecCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence 1100 011111123345565554445 4566787765443
No 396
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.96 E-value=0.35 Score=28.75 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=25.4
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCCccceEEEEe
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~ 192 (207)
.|.|...+..|+|.|.-.+.+..|.. ....+.|.
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqVs 105 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQVS 105 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcE-EEEEEEEE
Confidence 58899999999999999999988865 34455544
No 397
>KOG4597|consensus
Probab=92.89 E-value=0.19 Score=38.06 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=54.0
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEE---CCcccccccc----CCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRH---NNKTLHHNIA----QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~---~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...+.++++..++|.+.|.+.+ .+.|.+ |+..+..... .........|.|-+....|.|.|+|.+.+..|..
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred hhhcccchhhcccccccCCcCc-eeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 3456788999999999998877 899965 3322211111 1112223469999999999999999999988866
Q ss_pred ccceEEEEE
Q psy10918 87 ESNAFFLNV 95 (207)
Q Consensus 87 ~~~~~~l~v 95 (207)
.. .+.+.+
T Consensus 284 ~r-dv~c~s 291 (560)
T KOG4597|consen 284 RR-DVPCSS 291 (560)
T ss_pred ec-cceeee
Confidence 32 444443
No 398
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.77 E-value=0.63 Score=26.33 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.0
Q ss_pred EEEecCCCCCCeEEEEEEe
Q psy10918 159 VAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~ 177 (207)
........+|+|.+.|.|+
T Consensus 45 ~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEESBTCGGSEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEc
Confidence 3445667789999999995
No 399
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.22 E-value=11 Score=36.00 Aligned_cols=158 Identities=14% Similarity=0.173 Sum_probs=87.7
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEE--eeeCCCCccceEEEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVG--FNIEGDGESNAFFLN 94 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~--~~~~~~~~~~~~~l~ 94 (207)
+..|+..++.-.+....+. .+.|+.+-..+.... .....+..++.. ....|.|.-.+ .|..+.. .....+.
T Consensus 1965 ~~~g~~~tF~A~v~~g~~V-~f~W~f~~~~~~g~~--~~~~~G~~vty~---~~~~G~~~I~v~A~N~l~s~-n~t~~i~ 2037 (2740)
T TIGR00864 1965 IATGEEKNFTANVQRGKPV-AFAWTFDLHHLHGDS--LVIHMGKDVSYT---AEAAGLLEIQLGAFNALGAE-NITLQLE 2037 (2740)
T ss_pred eecCceEEEEEEEecCCce-EEEEEeeecccCCCc--ceeecCCceEEc---cCCCcEEEEEEEEEcccCcc-cccEEEE
Confidence 4568888888887554444 899987644333311 122223333222 24688887655 4666654 3455677
Q ss_pred EEeCCcccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEE
Q psy10918 95 VMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174 (207)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 174 (207)
|+.+...............+..+.|.|.....+..+.+.|-++++...... +... +.+ .....|.|.-
T Consensus 2038 VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T-------~~~~----~sH-tY~r~G~Y~V 2105 (2740)
T TIGR00864 2038 AQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDT-------DEPR----AEH-EYLHPGDYRV 2105 (2740)
T ss_pred EEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCcccc-------CCce----eEE-EecCCccEEE
Confidence 775543221111112345688899999986655556999998755422111 1110 000 2235688875
Q ss_pred E--EecCCCCCccceEEEEee
Q psy10918 175 W--GSNKIGHQRVPCVFHIVS 193 (207)
Q Consensus 175 ~--~~n~~g~~~~~~~~~v~~ 193 (207)
. |.|.++.......+.|.+
T Consensus 2106 ~V~a~N~VS~~~a~~~i~V~v 2126 (2740)
T TIGR00864 2106 QVNASNLVSFFSAHAEINVQV 2126 (2740)
T ss_pred EEEEEcceeeeeeEEEEEEEE
Confidence 4 468777665555555544
No 400
>PHA03052 Hypothetical protein; Provisional
Probab=91.32 E-value=1.4 Score=23.80 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=25.4
Q ss_pred CCCcccCCCcEEEEeEecc---CCCCcEEEEEECCcccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVA---VPPVYKVEWRHNNKTLH 48 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~---~~~~~~i~W~~~~~~~~ 48 (207)
....+..|.+++|.|++.- ...+ .+.|..|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a-~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDA-DVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcce-EEEEEeCCcEEe
Confidence 3455677999999999842 2223 688999988774
No 401
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=89.11 E-value=2.2 Score=22.86 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=29.1
Q ss_pred EEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 24 YFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 24 ~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
+|+|.....- -+.||-||..+. +....+|++.++ .++|.|+.+
T Consensus 2 tltC~s~~sL---PiswYcN~TRLl-------Rlt~~Tlt~~~l----tcNFtCV~q 44 (71)
T PF11049_consen 2 TLTCPSNASL---PISWYCNGTRLL-------RLTQQTLTVVTL----TCNFTCVGQ 44 (71)
T ss_pred ceecCCCCCC---cccEEECCceee-------eecCCeEeeeee----eEEeeecCC
Confidence 5788765432 478999987654 344556777665 578899765
No 402
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=89.10 E-value=5.5 Score=27.23 Aligned_cols=96 Identities=10% Similarity=0.194 Sum_probs=44.4
Q ss_pred cEEEEEECCccccccccC---CeEecC-----CeEEEE-ecCCCCCeeeEEEEeeeCCCCcc----ceEEEEEEeCCccc
Q psy10918 36 YKVEWRHNNKTLHHNIAQ---GIIMTN-----QSLVLQ-RVNRQSAGNYTCVGFNIEGDGES----NAFFLNVMYSPTCK 102 (207)
Q Consensus 36 ~~i~W~~~~~~~~~~~~~---~~~~~~-----~~l~i~-~~~~~d~g~Y~C~~~~~~~~~~~----~~~~l~v~~~~~~~ 102 (207)
..+.|+.|+.++...... ....++ ++|.+. +......-..+|.+.-....... ....-.|+.+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 378999999887642211 111112 234442 22223345788987633322211 12222333333322
Q ss_pred CCCCceeeeeeCCcEEEEEEeccCCCC-ceEEEEEcCce
Q psy10918 103 PHQQRVLGVARQEKVNISCEVDANPPD-VKFSWTFNNSA 140 (207)
Q Consensus 103 ~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~~~~~~ 140 (207)
....+ -...|.+.=-|.. ..+.|.-++..
T Consensus 87 -------v~F~~--g~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 87 -------VRFED--GYAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred -------EEecC--CEEEEEcceeeCCCeEEEEEECCcc
Confidence 11222 2344544433422 59999987654
No 403
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=88.52 E-value=3.4 Score=24.06 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=47.3
Q ss_pred eeecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC--ccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN--KTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...+....|..|+++.+.|+..=..+. .+.|--.- ..+.. ...-..+.|.+++. | ..-.|.+. -.|..
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~-~~GLET~L~k~~~~~------g~~W~~f~LsnV~~-d-s~~~C~~~-C~g~Q 76 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQPE-KIGLETSLSKTELDS------GPQWKAFQLSNVTE-D-SSPLCFFN-CSGEQ 76 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS-S-EEEEESSSEEEEEEE------ETTEEEEEEEEE-S-C-EEEEEEEE-ETTEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCCC-cceEEEecCCcccCC------CCcEEEEEEEcccc-C-CeEEEEEE-cCCeE
Confidence 344677788999999999997533222 55553211 11110 00113478888875 4 46678876 34555
Q ss_pred ccceEEEEEEeCCc
Q psy10918 87 ESNAFFLNVMYSPT 100 (207)
Q Consensus 87 ~~~~~~l~v~~~~~ 100 (207)
...+..++|+.+|.
T Consensus 77 ~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 77 SSASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEEEB--S
T ss_pred EEeEEeeEEeCCCC
Confidence 56677888887664
No 404
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=87.38 E-value=4 Score=23.64 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=38.1
Q ss_pred eeeeCCcEEEEEEeccC-C---CCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEe
Q psy10918 110 GVARQEKVNISCEVDAN-P---PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177 (207)
Q Consensus 110 ~~~~g~~~~l~C~~~~~-~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 177 (207)
.+..|+.++..|..... . ....+.|..++..+ .....+.. +.+.+..++.+.....+-.|-|...
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i--P~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI--PGSQYRVI-NDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES--TCGCEEEE-STTEEEEEESS--SSEEEEEEEEEC
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC--ChhHccee-CCeEEEEEEccCCCCCceEEEEEEc
Confidence 46789999999988743 1 22489999887743 23333333 3334667777766666566777643
No 405
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=86.89 E-value=4 Score=23.10 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=17.7
Q ss_pred CCeEEEEecCCCCCeeeEEEEe
Q psy10918 59 NQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 59 ~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
...+.....+..|+|.+.|.+.
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEc
Confidence 3456667778899999999995
No 406
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=86.45 E-value=4.8 Score=23.60 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=39.2
Q ss_pred cEEEEEEe-ccCCCCceEEEEEc--CceeeeccceeEEeecCc---eEEEEEecCCCCCCeEEEEEEecCCCCCccceEE
Q psy10918 116 KVNISCEV-DANPPDVKFSWTFN--NSAETVNVAQAHILRSGT---LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189 (207)
Q Consensus 116 ~~~l~C~~-~~~~~~~~~~W~~~--~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~ 189 (207)
.+.-.|.+ .|.|+. .|+|.-+ |.. +.. .....+++ .+.+.+-.....|.-..+|.+.........++.|
T Consensus 22 v~VA~CiSa~GrPpa-~ItW~t~l~G~~-etq---~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPS-VVRWDTRLKGEA-EFQ---EIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCc-EeEEEccCCCce-eee---eeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 45668984 555665 9999853 221 111 11112222 2345555667778889999999864444334444
No 407
>PHA03189 UL14 tegument protein; Provisional
Probab=85.25 E-value=7.7 Score=28.04 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=15.8
Q ss_pred cCCCcccCCCcEEEEeEeccC
Q psy10918 12 LNPDHIKEDSDVYFDCDIVAV 32 (207)
Q Consensus 12 ~~~~~v~~g~~v~l~C~~~~~ 32 (207)
..+..+..|+.+++.|.+...
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCccccCCCceeeeeeeecCC
Confidence 345567789999999998543
No 408
>PHA03240 envelope glycoprotein M; Provisional
Probab=84.79 E-value=2.5 Score=28.59 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=39.0
Q ss_pred ecCCCcccCCCcEEEEeEeccCCCCcEEEEEECC-----------ccccc-----ccc----------CC--eEecCCeE
Q psy10918 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNN-----------KTLHH-----NIA----------QG--IIMTNQSL 62 (207)
Q Consensus 11 ~~~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~-----------~~~~~-----~~~----------~~--~~~~~~~l 62 (207)
......+.+|++|+|.-.-...+. ..+.||+.. .++-. +.. .. +.=.+++|
T Consensus 29 ACievt~r~G~nVTLga~~~lhpg-q~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL 107 (258)
T PHA03240 29 ACEEHTTREGDPLLLGGGHGLGAG-QKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTL 107 (258)
T ss_pred hceecccccCCceeeCCcccCCCC-CEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceE
Confidence 344566788999998765332333 389999811 11110 000 00 11235679
Q ss_pred EEEecCCCCCeeeE
Q psy10918 63 VLQRVNRQSAGNYT 76 (207)
Q Consensus 63 ~i~~~~~~d~g~Y~ 76 (207)
.|.++...|.|+|.
T Consensus 108 ~i~~vn~sd~~nYc 121 (258)
T PHA03240 108 IIAHLNLSDAGEYC 121 (258)
T ss_pred EEEEEeecCcchhh
Confidence 99999999999994
No 409
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=84.29 E-value=6.3 Score=23.11 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=36.2
Q ss_pred EEEEeEe-ccCCCCcEEEEEEC--Ccccc--ccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEE
Q psy10918 23 VYFDCDI-VAVPPVYKVEWRHN--NKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLN 94 (207)
Q Consensus 23 v~l~C~~-~~~~~~~~i~W~~~--~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~ 94 (207)
+.-.|.+ .|.|+. .|.|.-+ |..-. .........-.+.+.+......|.-...|.+....... ..++.|+
T Consensus 23 ~VA~CiSa~GrPpa-~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~-~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPS-VVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRF-TDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCc-EeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccc-cccEEec
Confidence 5568986 556655 9999753 22100 00000011111235555666677778899987653322 3344443
No 410
>PHA03052 Hypothetical protein; Provisional
Probab=82.30 E-value=6.1 Score=21.43 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=25.9
Q ss_pred ceeeeeeCCcEEEEEEeccCCC--CceEEEEEcCcee
Q psy10918 107 RVLGVARQEKVNISCEVDANPP--DVKFSWTFNNSAE 141 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~ 141 (207)
....+..|..+++.|.+.-.++ ...+.|..|+...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 3345678999999999874433 3378999888775
No 411
>KOG0613|consensus
Probab=77.50 E-value=7.7 Score=33.76 Aligned_cols=158 Identities=7% Similarity=-0.048 Sum_probs=86.5
Q ss_pred CCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCe----EecCCeEEEEecCCCCCeeeEEEEeeeCCCCccc
Q psy10918 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI----IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESN 89 (207)
Q Consensus 14 ~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 89 (207)
......+..+.+.|...+...+-.+.|+.+............ ......+.|..+...+.+.|.|.+.|..|.....
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~ 422 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTI 422 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccccc
Confidence 344455667899999988777745999987654433221111 1123457888888899999999999888765443
Q ss_pred eEEEEEEeCC-cc----cCCCCceeeeeeC--CcEEEEEEeccCCCC-ceEEEEEcCceeeeccceeEEeecCceEEEEE
Q psy10918 90 AFFLNVMYSP-TC----KPHQQRVLGVARQ--EKVNISCEVDANPPD-VKFSWTFNNSAETVNVAQAHILRSGTLSVVAY 161 (207)
Q Consensus 90 ~~~l~v~~~~-~~----~~~~~~~~~~~~g--~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i 161 (207)
... .+.... .. .... .......+ +.+.+.|.....+.+ ..++|++.+-.... ............|.+
T Consensus 423 ~~~-~vs~~~~gt~~~~~kk~-~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~---~s~~l~r~~~tslLl 497 (1205)
T KOG0613|consen 423 AES-TVSEEMPGTQPPKFKKD-VSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSD---RSVTLTRDVLTSLLL 497 (1205)
T ss_pred chh-hcccccCCCCCcccccc-ccccccccCCcccccccCCCCccccceeEeeccCCccccc---ccccccccchhhhee
Confidence 332 222221 11 1111 11112233 678888888776632 25666665433221 111111222233445
Q ss_pred ecCCCCCCeEEEEEE
Q psy10918 162 SPNSELDYGTLICWG 176 (207)
Q Consensus 162 ~~~~~~~~g~y~C~~ 176 (207)
.-....+.|.|.-..
T Consensus 498 k~~~~~~~A~~~~a~ 512 (1205)
T KOG0613|consen 498 KVASLSDGAQYTRAL 512 (1205)
T ss_pred eccCCCccchhhhhh
Confidence 555666777775333
No 412
>PHA03283 envelope glycoprotein E; Provisional
Probab=71.87 E-value=48 Score=26.28 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=27.7
Q ss_pred CeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 60 ~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
+.|+|.+++.+++|.|.--.++..+ .....+.|.|+.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 4599999999999999988776544 434455666664
No 413
>PHA03112 IL-18 binding protein; Provisional
Probab=70.58 E-value=25 Score=22.42 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=19.9
Q ss_pred cCCCcEEEEeEeccC-CCCcEEEEEECC
Q psy10918 18 KEDSDVYFDCDIVAV-PPVYKVEWRHNN 44 (207)
Q Consensus 18 ~~g~~v~l~C~~~~~-~~~~~i~W~~~~ 44 (207)
.+++.+.|.|.+-+. |.-.-+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 568889999999765 433367899765
No 414
>PHA03282 envelope glycoprotein E; Provisional
Probab=68.52 E-value=25 Score=27.30 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.8
Q ss_pred eEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 55 IIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 55 ~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
....+.+|.|.+++.+|+|.|.-.+.
T Consensus 119 vs~~n~tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 119 VAVVNGTLVLREARETDSGMYVLSVS 144 (540)
T ss_pred eeEecceEEEeeccccCCceEEEEec
Confidence 33457789999999999999998864
No 415
>PHA03112 IL-18 binding protein; Provisional
Probab=68.15 E-value=28 Score=22.16 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=40.6
Q ss_pred eeCCcEEEEEEeccC-CCCceEEEEEcCc-eeeeccc----e--------eEEeecCceEEEEEecCCCC-CCeEEEEEE
Q psy10918 112 ARQEKVNISCEVDAN-PPDVKFSWTFNNS-AETVNVA----Q--------AHILRSGTLSVVAYSPNSEL-DYGTLICWG 176 (207)
Q Consensus 112 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~-~~~~~~~----~--------~~~~~~~~~~~l~i~~~~~~-~~g~y~C~~ 176 (207)
.+++.+.|.|.+-+. |.-.-+.|..++. ....... . .+....+....|.+.++... +.-.++|..
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 357899999999865 5545899997652 2110000 0 00111122445666666544 334788877
Q ss_pred ecCCCCCc
Q psy10918 177 SNKIGHQR 184 (207)
Q Consensus 177 ~n~~g~~~ 184 (207)
....+...
T Consensus 116 ~D~~~~~k 123 (141)
T PHA03112 116 MDLDGPIK 123 (141)
T ss_pred ecCCchhh
Confidence 76655443
No 416
>PHA03189 UL14 tegument protein; Provisional
Probab=67.98 E-value=45 Score=24.40 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.5
Q ss_pred cCCCCCCeEEEEEEecCC
Q psy10918 163 PNSELDYGTLICWGSNKI 180 (207)
Q Consensus 163 ~~~~~~~g~y~C~~~n~~ 180 (207)
++..+.+|.|.|...|..
T Consensus 139 ~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 139 RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEecccceEEEEecccc
Confidence 567788999999999975
No 417
>PHA03240 envelope glycoprotein M; Provisional
Probab=67.30 E-value=16 Score=25.00 Aligned_cols=22 Identities=14% Similarity=-0.099 Sum_probs=17.2
Q ss_pred ceEEEEEecCCCCCCeEEEEEE
Q psy10918 155 TLSVVAYSPNSELDYGTLICWG 176 (207)
Q Consensus 155 ~~~~l~i~~~~~~~~g~y~C~~ 176 (207)
..++|.|.++..+|.|+|.-.-
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k 124 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKK 124 (258)
T ss_pred ccceEEEEEEeecCcchhhhcc
Confidence 3567889999999999995333
No 418
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=66.86 E-value=22 Score=20.37 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=32.2
Q ss_pred cEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 22 ~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
...|.+.+.+. .. .+.||.|+..+..... ...+.+ .....|.|+-.+.+..|..
T Consensus 31 ~~~l~l~a~~~-~~-~~~W~vdg~~~g~~~~------~~~~~~---~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 31 RQPLVLKAAGG-RG-PVYWFVDGEPLGTTQP------GHQLFW---QPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred cceEEEEEeCC-CC-cEEEEECCEEcccCCC------CCeEEe---CCCCCeeEEEEEEcCCCCE
Confidence 45556666555 33 8999999998833211 112222 2346788888887665544
No 419
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=62.42 E-value=29 Score=20.26 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=46.5
Q ss_pred ceeeeeeCCcEEEEEEeccCCCCceEEEEEcCceeeeccceeEEeecCceEEEEEecCCCCCCeEEEEEEecCCCCCccc
Q psy10918 107 RVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186 (207)
Q Consensus 107 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 186 (207)
....+..|.++.+.|...=.-+ ..+.|.-. ..........+...+.+.+++. | ....|.+.-. |. ...
T Consensus 11 ~~~vV~~G~Sv~VNCStsC~~p-~~~GLET~-------L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~-g~-Q~~ 78 (91)
T PF03921_consen 11 EEPVVPPGGSVWVNCSTSCPQP-EKIGLETS-------LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCS-GE-QSS 78 (91)
T ss_dssp SEEEEETTEEEEEEEEESSSS--SEEEEESS-------SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEET-TE-EEE
T ss_pred CccEECCCCCEEEEEcCCCCCC-CcceEEEe-------cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcC-Ce-EEE
Confidence 3345778999999999863322 25555421 1222233334566778888886 4 5678988753 32 345
Q ss_pred eEEEEeecccCC
Q psy10918 187 CVFHIVSAVTFH 198 (207)
Q Consensus 187 ~~~~v~~~~~~~ 198 (207)
..+.|.++.+|.
T Consensus 79 ~~~~ItVY~~Pe 90 (91)
T PF03921_consen 79 ASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEB--S
T ss_pred eEEeeEEeCCCC
Confidence 567777777664
No 420
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=60.11 E-value=29 Score=22.73 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.9
Q ss_pred eEEEEecCCCCCeeeEEEEee
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
.|.|.+.+.+|+|.|.-.++-
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l 145 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWL 145 (161)
T ss_pred EEEeCCCCcccceEEEEEEEE
Confidence 399999999999999999873
No 421
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=59.38 E-value=26 Score=18.80 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=13.4
Q ss_pred ccCCCcEEEEeEeccCCCCcEEEEEE
Q psy10918 17 IKEDSDVYFDCDIVAVPPVYKVEWRH 42 (207)
Q Consensus 17 v~~g~~v~l~C~~~~~~~~~~i~W~~ 42 (207)
|..|++++|.=. +.. .+.||+
T Consensus 2 v~~G~N~TL~Gp----~~~-~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLVGP----PDG-PVTWYK 22 (63)
T ss_pred EeEcCcEEEeCC----CCC-ceEEEE
Confidence 456888877543 323 688984
No 422
>COG5475 Uncharacterized small protein [Function unknown]
Probab=55.42 E-value=21 Score=18.45 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=15.6
Q ss_pred EEEEecCCCCCeeeEEEEeeeCCCC
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNIEGDG 86 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~~~~~ 86 (207)
++++..+ ..|.|.|...+..|..
T Consensus 20 Mtvs~~s--s~Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 20 MTVSGYS--SDGMYECRWFDGYGVK 42 (60)
T ss_pred EEEeccc--cCCeEEEEEecCCCcc
Confidence 4444443 2399999999887744
No 423
>PHA03282 envelope glycoprotein E; Provisional
Probab=55.29 E-value=41 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=21.4
Q ss_pred EEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 159 VAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 159 l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
|.|.+++.+|+|.|.-.+...-....+..
T Consensus 126 l~l~~a~~~DsG~Y~L~~~~~~~~~~~~~ 154 (540)
T PHA03282 126 LVLREARETDSGMYVLSVSRAPNSTAARA 154 (540)
T ss_pred EEEeeccccCCceEEEEecCCCCchhheE
Confidence 88899999999999999765443333333
No 424
>KOG0200|consensus
Probab=55.10 E-value=1.2e+02 Score=24.97 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=59.0
Q ss_pred CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEeCCc---ccCCCCceeeeeeCCcEEEEEEeccCCCCceEEEE
Q psy10918 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT---CKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135 (207)
Q Consensus 59 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~ 135 (207)
...+.+..+...+.|.|+|.+.+ . ...+.+. ..... .....+.......+....+ +...+. ..+.|.
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~--~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~ 81 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN--I---NLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQ-PFIKWG 81 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec--C---ceeeEee-cccCcccccccCCCCCcceeeccccee---eeecCC-Ccceee
Confidence 45688888889999999999987 1 1122222 11110 1111122222334444455 222333 377776
Q ss_pred EcCceee----ec--cc---------eeEEeecCceEEEEEecCCCCCCeEEEEEEecCCC
Q psy10918 136 FNNSAET----VN--VA---------QAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181 (207)
Q Consensus 136 ~~~~~~~----~~--~~---------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 181 (207)
....... .. .. ..+.. ......+.+.++...+++.|.|...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 141 (609)
T KOG0200|consen 82 TNLEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGRTVG 141 (609)
T ss_pred eeecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCCccc
Confidence 5432110 00 00 00011 33455688889999999999999987443
No 425
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=52.85 E-value=6.8 Score=30.29 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 59 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
.+.|.|.+++..|+|.|.-...+..+......+.|.|..
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ---------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 456999999999999999988766665555566666664
No 426
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=50.79 E-value=19 Score=27.76 Aligned_cols=112 Identities=14% Similarity=0.243 Sum_probs=23.4
Q ss_pred cEEEEeEeccCCCCcEEEEEECCccccccc-cCCeEecCCeEEEEecCCCCCeeeE--EEEe--eeCCCCccceEEEEEE
Q psy10918 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHNI-AQGIIMTNQSLVLQRVNRQSAGNYT--CVGF--NIEGDGESNAFFLNVM 96 (207)
Q Consensus 22 ~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~--C~~~--~~~~~~~~~~~~l~v~ 96 (207)
.+.+.|.... .. .+.|.....+..... ..........|.|...... .|.|. ..+. +..+......+.+.|.
T Consensus 2 ~~~~~C~~~~--~~-~y~W~~~~~~~~~~~~~~~~~~~~~~l~ip~~~L~-~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~ 77 (440)
T PF02010_consen 2 HVSLNCNDAS--TV-TYNWTVFSGPSNSIVQDMDNSSNTPQLTIPPYTLP-PGDYTFTLTVTASSNPGLSSTDSVTVTVE 77 (440)
T ss_dssp -----------------BEEEEES-TT-EEESTTT--SSSECEEECES---SCEEEEEEEEE--BCTTEEEEEEEEEEEE
T ss_pred Cccccccccc--ce-EEEEEEEecCCcCccccccccCCceEEEeCcccCC-CCCEEEEEEEEEECCCCceEEEEEEEEEe
Confidence 3567894222 22 788976432221100 0000123456888876653 45554 4444 2222222445556666
Q ss_pred eCCcccCCCCce-eeeeeCCcEEEEEEeccCC------CCceEEEEEc
Q psy10918 97 YSPTCKPHQQRV-LGVARQEKVNISCEVDANP------PDVKFSWTFN 137 (207)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~------~~~~~~W~~~ 137 (207)
..+......... ..+..++.+.|.....-+| ....+.|.-.
T Consensus 78 ~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~ 125 (440)
T PF02010_consen 78 PSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCT 125 (440)
T ss_dssp ------------------------------------------------
T ss_pred eccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEe
Confidence 544433322211 1112234566665443333 1247788754
No 427
>KOG3611|consensus
Probab=48.24 E-value=52 Score=27.66 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=34.1
Q ss_pred EEEEeEeccCCCCcEEEEEECCcc------ccccccCCeEecCCeEEEEecCCCCCeeeEEEEeee
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKT------LHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNI 82 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 82 (207)
..|.|...+.-. .+.|+..... +... ........+.+.+..++..|.|.|.|.+...
T Consensus 572 ~~l~c~~~~~~a--~~~w~~~~~~~~~~~~~~~~-~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 572 EVLRCVPSSNQA--PVVWYHQSTKDGRKEEVRQR-DVVSRTDEGGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred ceeecccccccc--ceeeEeeccCccccceeccC-cceeecccCceeEEEEeeccCcccccccccC
Confidence 567887655432 4778742211 1111 1112223445888889999999999998744
No 428
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=42.76 E-value=1.8e+02 Score=24.35 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=34.0
Q ss_pred EEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEEEeeeCCCCcc
Q psy10918 23 VYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGES 88 (207)
Q Consensus 23 v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 88 (207)
+.|.-...+... .+.|+.||.++........ + .-+..+.|.|.-.+....|...+
T Consensus 672 ~~l~l~~~g~~~--~~~W~lng~~l~~~~~~~~------~---~w~~~~~G~~~ltVid~~G~~~s 726 (733)
T COG4953 672 VTLKLIAQGGRG--PIYWFLNGEPLGEASRNRP------V---TWKPEDAGYYKLTVIDASGRSAS 726 (733)
T ss_pred eEEEEEcCCCcc--eeEEEeCCcCccccccCCc------c---eeccCCCCeEEEEEEccCCceee
Confidence 555555555332 6999999998876322111 1 12456789999988866665533
No 429
>PHA03290 envelope glycoprotein I; Provisional
Probab=41.92 E-value=92 Score=23.21 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=24.1
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.|.|.+.+.+|+|.|.-+++-. |...+.-+.+.+.
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ld-ga~~sDvF~lsv~ 164 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLD-HSRLFDGFFLGLN 164 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeC-CCcccceEEEEEE
Confidence 4999999999999999998733 2332334444443
No 430
>PHA03283 envelope glycoprotein E; Provisional
Probab=41.82 E-value=91 Score=24.86 Aligned_cols=38 Identities=16% Similarity=-0.022 Sum_probs=27.4
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeecc
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~~ 195 (207)
.+.|.|.+.+.+++|.|+-...+..+ .....+.|.+.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~--~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM--MKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc--eEEEEEEEEecC
Confidence 34589999999999999999998655 333334455544
No 431
>PHA03286 envelope glycoprotein E; Provisional
Probab=41.22 E-value=65 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=30.2
Q ss_pred CeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 60 ~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
+.|+|.+++..++|.|.--..|..+......+.|.|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 4599999999999999998887767666666677775
No 432
>PHA02935 Hypothetical protein; Provisional
Probab=40.63 E-value=64 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=23.1
Q ss_pred EEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 62 l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
|.|..++-+|+|.|.-..+-..|........+.|+
T Consensus 104 lnisslryedsgsykgvshlkdgvivtttmnisvk 138 (349)
T PHA02935 104 LNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVK 138 (349)
T ss_pred eeccceeeccCCcccCchhhcCceEEEEEEEEEEE
Confidence 66777788999999877765555544434444444
No 433
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=39.89 E-value=63 Score=17.45 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=36.4
Q ss_pred CCCceEEEEEcCceeeeccceeEEee-cCceEEEEEecCCCCCCeEEEEEEecCCCCCccceEEEE
Q psy10918 127 PPDVKFSWTFNNSAETVNVAQAHILR-SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191 (207)
Q Consensus 127 ~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v 191 (207)
+..+...|++++.... ...+.. .+.....+-........|..+..+....|..-....|.|
T Consensus 4 ~~~v~H~W~~~g~~~~----~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 4 DETVYHRWYKNGKLVA----RIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred CCEEEEEEEECCEEEE----EEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 3345788999887632 111111 222344444455557889999999988776655544443
No 434
>PHA03289 envelope glycoprotein I; Provisional
Probab=37.32 E-value=99 Score=22.91 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.3
Q ss_pred eEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEE
Q psy10918 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96 (207)
Q Consensus 61 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~ 96 (207)
.|.|.+.+..|+|.|.-.++-. +...+.-+.+.+.
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ld-ga~~sDvF~lsv~ 157 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLA-GRNKSDIFRTSVF 157 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeC-CCccCceEEEEEE
Confidence 4999999999999999998743 2333444444433
No 435
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=37.02 E-value=87 Score=18.19 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=25.0
Q ss_pred cccCCCcEEEEeEeccCCCCcEEEEEECCccccccc--cCCeEecCC-----eEEEEec-CCCCCeeeEEEEe
Q psy10918 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI--AQGIIMTNQ-----SLVLQRV-NRQSAGNYTCVGF 80 (207)
Q Consensus 16 ~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~-----~l~i~~~-~~~d~g~Y~C~~~ 80 (207)
.+.-.....|.|.+.+-.....+.--++-..+.... ...+..+.. ......- ..+--|-|+|+..
T Consensus 11 Plvs~~etSL~Ci~s~W~s~esitigrd~~~~~nqh~~plEv~~de~R~~ak~vvwkrekas~~~GayyCegk 83 (96)
T PF10430_consen 11 PLVSNSETSLTCIASDWSSHESITIGRDFEALMNQHQEPLEVPQDETRPHAKKVVWKREKASEAIGAYYCEGK 83 (96)
T ss_dssp SEE-SS-EEEEEEE-SS--SS--EEEE-TTTSTT-------EEEETTSSSEEEEEE-TTT-SS--EEEEEEEE
T ss_pred cccccCceeEEEEecCCcCCCcEEecccchhhhhcccCCcccccCCCCcccceEEEEeeccccccceEEEEEE
Confidence 344455569999987643333566555543332211 111111111 1222211 2344699999987
No 436
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.49 E-value=4.9e+02 Score=26.41 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=63.5
Q ss_pred CCCcccCCCcEEEEeEeccCCCCcEEEEEECCccccccccCCeEecCCeEEEEecCCCCCeeeEEE--EeeeCCCCccce
Q psy10918 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV--GFNIEGDGESNA 90 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~--~~~~~~~~~~~~ 90 (207)
....+..|+.++|.+.+...+.. .+.|...+...... ..+. ++.. .-..-|.|.-. +.|..+.. ...
T Consensus 1875 s~~~~~~n~~v~fsa~l~~GS~V-tf~w~fGdgs~~~~------t~~~--t~~H-sY~~~G~Y~VtV~A~N~Vs~~-~a~ 1943 (2740)
T TIGR00864 1875 SKKIAAIGEKVEFQILLAAGSAV-NFRLQIGGAAPEVL------QPGP--RFSH-SFPRVDDHMVNLRAKNEVSCA-QAN 1943 (2740)
T ss_pred ccccccCCCEEEEEEEecCCCce-EEEEEeCCCCceee------cCCC--eEEe-ecCCCCcEEEEEEEEecccee-eee
Confidence 34456789999999988776665 89998865321110 0111 1111 12334666543 44655553 445
Q ss_pred EEEEEEeCCcccCCCCc-eeeeeeCCcEEEEEEeccCCCCceEEEEEc
Q psy10918 91 FFLNVMYSPTCKPHQQR-VLGVARQEKVNISCEVDANPPDVKFSWTFN 137 (207)
Q Consensus 91 ~~l~v~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~ 137 (207)
+.+.|..+-.-..+... ...+..|+...|.-.+....+ +.+.|++.
T Consensus 1944 ~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~-V~f~W~f~ 1990 (2740)
T TIGR00864 1944 LHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKP-VAFAWTFD 1990 (2740)
T ss_pred EEEEEEEeccceEecCCcccceecCceEEEEEEEecCCc-eEEEEEee
Confidence 55666654222211111 112467888889888865555 59999875
No 437
>PHA03292 envelope glycoprotein I; Provisional
Probab=32.21 E-value=1.5e+02 Score=22.72 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=19.4
Q ss_pred CeEEEEecCCCCCeeeEEEEee
Q psy10918 60 QSLVLQRVNRQSAGNYTCVGFN 81 (207)
Q Consensus 60 ~~l~i~~~~~~d~g~Y~C~~~~ 81 (207)
..|.|.+.+..|+|.|.-.++-
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~L 149 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKL 149 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEe
Confidence 3499999999999999999874
No 438
>PHA03281 envelope glycoprotein E; Provisional
Probab=29.89 E-value=2.4e+02 Score=22.91 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=27.1
Q ss_pred CCeEEEEecCCCCCeeeEEEEeeeCCCCccceEEEEEEe
Q psy10918 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY 97 (207)
Q Consensus 59 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~~l~v~~ 97 (207)
.+.|+|.+++..++|.|+--.+...|......+.|+|+.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 356999999999999999777644443423245566654
No 439
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=29.77 E-value=1.7e+02 Score=19.34 Aligned_cols=23 Identities=9% Similarity=-0.168 Sum_probs=19.8
Q ss_pred EEEEecCCCCCCeEEEEEEecCC
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
.|.|.+.+.+|+|.|.-.++=..
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECC
Confidence 48899999999999999998544
No 440
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=29.73 E-value=1.3e+02 Score=19.73 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=8.0
Q ss_pred CCCeEEEEEEecCCC
Q psy10918 167 LDYGTLICWGSNKIG 181 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g 181 (207)
.|.+.|+|.+..+.|
T Consensus 70 ~d~~~~sC~I~RPqg 84 (158)
T PF10572_consen 70 DDNGHYSCIIWRPQG 84 (158)
T ss_pred CCCCceEEEEECCCC
Confidence 355556666555543
No 441
>PHA03286 envelope glycoprotein E; Provisional
Probab=28.43 E-value=2.4e+02 Score=22.30 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=25.6
Q ss_pred eEEEEEecCCCCCCeEEEEEEecCCCCCccce
Q psy10918 156 LSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187 (207)
Q Consensus 156 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 187 (207)
.+.|.|.+.+..++|.|+-...|..|....++
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~v 157 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDV 157 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEE
Confidence 34589999999999999999998766555443
No 442
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=27.81 E-value=1.4e+02 Score=17.73 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=23.2
Q ss_pred CCCcccCCCcEEEEeEecc----CCCCcEEEEEECCccccc
Q psy10918 13 NPDHIKEDSDVYFDCDIVA----VPPVYKVEWRHNNKTLHH 49 (207)
Q Consensus 13 ~~~~v~~g~~v~l~C~~~~----~~~~~~i~W~~~~~~~~~ 49 (207)
.+..+..|.+-.+.|.+.. .|..-++.|+..+..+..
T Consensus 9 SP~~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg 49 (110)
T PF09085_consen 9 SPEALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEG 49 (110)
T ss_dssp ESSSB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT
T ss_pred ChhHhccCCCceeeeeeccccCCCCCeEEeeeeeCceeecc
Confidence 3445678999999999843 343447999998877754
No 443
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=26.44 E-value=1.1e+02 Score=16.20 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=18.6
Q ss_pred eeeCCcEEEEEEeccCCCCceEEEEEcC
Q psy10918 111 VARQEKVNISCEVDANPPDVKFSWTFNN 138 (207)
Q Consensus 111 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~ 138 (207)
+..|+.+.|..... ...+..+.|.+++
T Consensus 8 ~~~g~~v~f~~~~~-~g~~~~y~W~fgd 34 (69)
T PF00801_consen 8 VPTGQPVTFTASSS-DGSPVTYSWDFGD 34 (69)
T ss_dssp EBTTSEEEEEETTT-TSSECEEEEE-SS
T ss_pred EcCCCEEEEEEEcc-CCCCeEEEEEECC
Confidence 45778888888772 3334599999987
No 444
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=26.05 E-value=77 Score=16.20 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=12.3
Q ss_pred CCCeEEEEEEecCCCCC
Q psy10918 167 LDYGTLICWGSNKIGHQ 183 (207)
Q Consensus 167 ~~~g~y~C~~~n~~g~~ 183 (207)
..+..|.|.+.|..|..
T Consensus 8 dssnsflctvqnkng~~ 24 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred cCCCceEEEEecccHhH
Confidence 34557999999987653
No 445
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=24.18 E-value=2e+02 Score=18.35 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=16.4
Q ss_pred eecCCCcccCCCcEEEEeEec--cC--CCCcEEEEEE
Q psy10918 10 RSLNPDHIKEDSDVYFDCDIV--AV--PPVYKVEWRH 42 (207)
Q Consensus 10 ~~~~~~~v~~g~~v~l~C~~~--~~--~~~~~i~W~~ 42 (207)
.-+-+..+..|+++.+.|... |. ...+.|+++-
T Consensus 37 tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ 73 (137)
T PF12988_consen 37 TMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQ 73 (137)
T ss_dssp E----SS--TTEEEEEEEEEEESS--SS---EEEEE-
T ss_pred EeccccccCCCCEEEEEEEEecCceecccEEEEEEEe
Confidence 334455678899999999973 32 2234677664
No 446
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=23.00 E-value=1.6e+02 Score=16.74 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=24.6
Q ss_pred eeecCCCcccCCCcEEEEeEecc--CC--CCcEEEEEECCccc
Q psy10918 9 GRSLNPDHIKEDSDVYFDCDIVA--VP--PVYKVEWRHNNKTL 47 (207)
Q Consensus 9 ~~~~~~~~v~~g~~v~l~C~~~~--~~--~~~~i~W~~~~~~~ 47 (207)
.....+..+..|+.+.+.-.+.. .. ....+.|+.++..+
T Consensus 7 ~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~ 49 (101)
T PF07705_consen 7 SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV 49 (101)
T ss_dssp -EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE
T ss_pred EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee
Confidence 34456667788999988887743 22 12357788877665
No 447
>PHA03292 envelope glycoprotein I; Provisional
Probab=22.90 E-value=3.6e+02 Score=20.81 Aligned_cols=37 Identities=8% Similarity=-0.078 Sum_probs=26.2
Q ss_pred EEEEecCCCCCCeEEEEEEecCCCCCccceEEEEeec
Q psy10918 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194 (207)
Q Consensus 158 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~~~v~~~ 194 (207)
.|.|.+...+|+|.|.-.++=.......-+.+.+.++
T Consensus 129 LL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfVy 165 (413)
T PHA03292 129 LLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFVY 165 (413)
T ss_pred EEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEEe
Confidence 5888999999999999999855443333344555544
No 448
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=22.72 E-value=30 Score=21.77 Aligned_cols=9 Identities=22% Similarity=0.601 Sum_probs=7.5
Q ss_pred EEEEEECCc
Q psy10918 37 KVEWRHNNK 45 (207)
Q Consensus 37 ~i~W~~~~~ 45 (207)
.++||.||-
T Consensus 101 sYRWFHdgC 109 (132)
T PF04668_consen 101 SYRWFHDGC 109 (132)
T ss_pred cceeeccch
Confidence 799999873
No 449
>KOG3486|consensus
Probab=21.76 E-value=1.1e+02 Score=17.32 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=10.4
Q ss_pred EEEecCC--CCCccceEEEEe
Q psy10918 174 CWGSNKI--GHQRVPCVFHIV 192 (207)
Q Consensus 174 C~~~n~~--g~~~~~~~~~v~ 192 (207)
|.++|.+ ...+.++.+++.
T Consensus 17 cS~sNriI~aKDHaSVQ~N~~ 37 (83)
T KOG3486|consen 17 CSATNRIITAKDHASVQLNIG 37 (83)
T ss_pred ccccceeeecccchheeeccc
Confidence 6666665 344555555444
No 450
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=21.72 E-value=69 Score=19.50 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=18.6
Q ss_pred CCeEecCCeEEEEecCCCCCeeeEEEEe
Q psy10918 53 QGIIMTNQSLVLQRVNRQSAGNYTCVGF 80 (207)
Q Consensus 53 ~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 80 (207)
..+...+-+|.|...+.+|+|-|.-...
T Consensus 96 Y~FhlEnLsL~Il~SrkE~EGWYfmtlE 123 (126)
T PF06214_consen 96 YKFHLENLSLEILESRKEDEGWYFMTLE 123 (126)
T ss_dssp EEEETTTTEEEETT--GGG-EEEEEEEE
T ss_pred cEEecccceeehhccccccCceEEEEee
Confidence 3455566778888889999999987654
No 451
>PHA03290 envelope glycoprotein I; Provisional
Probab=20.58 E-value=3.8e+02 Score=20.23 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=20.0
Q ss_pred EEEEEecCCCCCCeEEEEEEecCC
Q psy10918 157 SVVAYSPNSELDYGTLICWGSNKI 180 (207)
Q Consensus 157 ~~l~i~~~~~~~~g~y~C~~~n~~ 180 (207)
-.|.|.+...+|+|.|.-.++=..
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCC
Confidence 358899999999999999998543
Done!