RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10918
(207 letters)
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 92.7 bits (230), Expect = 4e-22
Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 16/195 (8%)
Query: 1 IPETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ 60
E S N +++ V F C+ A Y W N ++L + + N+
Sbjct: 463 SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL--WWVNGQSLPVSPRLQLSNGNR 520
Query: 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNIS 120
+L L V R A Y C N S+ L+V+Y P +N+S
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580
Query: 121 CEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
C +NP ++SW N + L + +PN + GT C+ SN
Sbjct: 581 CHSASNPS-PQYSWRINGIP---------QQHTQVLFIAKITPN---NNGTYACFVSNLA 627
Query: 181 GHQRVPCVFHI-VSA 194
+ V I VSA
Sbjct: 628 TGRNNSIVKSITVSA 642
Score = 83.5 bits (206), Expect = 5e-19
Identities = 45/200 (22%), Positives = 70/200 (35%), Gaps = 15/200 (7%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS 61
PE S N +++ V F C+ Y W NN++L + + N++
Sbjct: 108 PELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYL--WWVNNQSLPVSPRLQLSNGNRT 165
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
L L V R +Y C N S++ LNV+Y P E +N+SC
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSC 225
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+NPP ++SW N + + L + + N + G+ C N
Sbjct: 226 HAASNPP-AQYSWFVNGT---------FQQSTQELFIPNITVN---NSGSYTCQAHNSDT 272
Query: 182 HQRVPCVFHIVSAVTFHPPF 201
V I PF
Sbjct: 273 GLNRTTVTTITVYAEPPKPF 292
Score = 79.6 bits (196), Expect = 1e-17
Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 15/194 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
S N + ++++ V C+ Y W NN++L + + N++L L V R
Sbjct: 294 TSNNSNPVEDEDAVALTCEPEIQNTTY--LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTR 351
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
G Y C N S+ LNV+Y P +++SC +NPP
Sbjct: 352 NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPP- 410
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
++SW + + + L + + + G C +N V
Sbjct: 411 AQYSWLIDGN---------IQQHTQELFISNITEK---NSGLYTCQANNSASGHSRTTVK 458
Query: 190 HIVSAVTFHPPFNQ 203
I + P
Sbjct: 459 TITVSAELPKPSIS 472
Score = 78.8 bits (194), Expect = 2e-17
Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 19/172 (11%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ + ++ C + PP + W + H Q L + + +++G Y
Sbjct: 392 YYRPGVNLSLSCHAASNPPA-QYSWLIDGNIQQHT---------QELFISNITEKNSGLY 441
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKP---HQQRVLGVARQEKVNISCEVDANPPDVKF 132
TC N + S V ++ V +CE +A
Sbjct: 442 TCQANNSASGHSRTT-VKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL- 499
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
W N + V+ + TL++ + N D +C N + R
Sbjct: 500 -WWVNGQSLPVSPRLQLSNGNRTLTLFNVTRN---DARAYVCGIQNSVSANR 547
Score = 66.5 bits (162), Expect = 4e-13
Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 19/177 (10%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
S + ++ C + PP + W N + Q L + +
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPA-QYSWFVNGTFQQ---------STQELFIPNITVN 258
Query: 71 SAGNYTCVGFNIEGDGE-SNAFFLNVMYSPTCKPHQQR--VLGVARQEKVNISCEVDANP 127
++G+YTC N + + + V P KP V ++ V ++CE +
Sbjct: 259 NSGSYTCQAHNSDTGLNRTTVTTITVYAEPP-KPFITSNNSNPVEDEDAVALTCEPEIQN 317
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
W NN + V+ + TL++ + D G C N++
Sbjct: 318 TTY--LWWVNNQSLPVSPRLQLSNDNRTLTL---LSVTRNDVGPYECGIQNELSVDH 369
Score = 60.0 bits (145), Expect = 6e-11
Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 25/190 (13%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG------------------I 55
P ++ E +V + W + + G I
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLF-GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66
Query: 56 IMTNQSLVLQRVNRQSAGNYTCVGFNIE-GDGESNAFFLNVMYSPTCKPHQQRVLGVARQ 114
I N SL++Q + + G YT + + E+ F P V +
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDK 126
Query: 115 EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174
+ V +CE + W NN + V+ + TL++ + N D + C
Sbjct: 127 DAVAFTCEPETQDATYL--WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN---DTASYKC 181
Query: 175 WGSNKIGHQR 184
N + +R
Sbjct: 182 ETQNPVSARR 191
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 92.3 bits (229), Expect = 5e-22
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 10/203 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
R + I + C + P + W +N+ L N Q + N +L+++ V R
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPI-DSIVWERDNRALPINRKQ-KVFPNGTLIIENVER 588
Query: 70 QS-AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
S YTCV N EG + + VM P P + + + C V
Sbjct: 589 NSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDL 648
Query: 129 DVKFSWTFNNSA--ETVNVAQAHIL-RSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
+ WT + A E + + + + R L++ A + G C N GHQ+
Sbjct: 649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS---HAGNFTCHARNLAGHQQF 705
Query: 186 PCVFHIVSAVTF-HPPFNQKLTR 207
++ + P ++ +
Sbjct: 706 TTPLNVYVPPRWILEPTDKAFAQ 728
Score = 74.2 bits (182), Expect = 9e-16
Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 15/197 (7%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ F C P V W + K + H+ L ++ V ++ G Y
Sbjct: 354 TVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGHS--------ESVLRIESVKKEDKGMY 404
Query: 76 TCVGFNIEGDGESNAF-FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
C N E++A L + P + + V + C NP + SW
Sbjct: 405 QCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEISW 463
Query: 135 TFNN----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190
+ + + V Q + +S + + D G C +K+G +
Sbjct: 464 ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN 523
Query: 191 IVSAVTFHPPFNQKLTR 207
+ + +
Sbjct: 524 VYGLPYIRQMEKKAIVA 540
Score = 62.3 bits (151), Expect = 1e-11
Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 17/194 (8%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQS--- 71
+ +C P ++ W ++ T ++ I ++ LV +
Sbjct: 50 DFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQ 108
Query: 72 ---AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
A Y C+ N G S + + + + + V R I C + +
Sbjct: 109 EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE-HVIRGNSAVIKCLIPSFVA 167
Query: 129 DVK--FSWTFNNSAETVNVAQA----HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
D SW + A+ +L SG L + E Y + C +++
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI--REVGPEDGYKSYQCRTKHRLTG 225
Query: 183 QRVPCVFHIVSAVT 196
+ +T
Sbjct: 226 ETRLSATKGRLVIT 239
Score = 61.5 bits (149), Expect = 2e-11
Identities = 26/176 (14%), Positives = 46/176 (26%), Gaps = 19/176 (10%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQ 65
+ S + C P W + + + + +L+++
Sbjct: 253 AKFDMKTYSGSSTMALLCPAQGYPVP-VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIK 311
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA 125
+ +G Y CV N G L V + K V +C+
Sbjct: 312 DAVVEDSGKYLCVVNNSVGGESVET-VLTVTAPLSAKIDPPTQT-VDFGRPAVFTCQYTG 369
Query: 126 NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
NP SW + A + L + + D G C+ N
Sbjct: 370 NPI-KTVSWMKDGKAIGHS--------ESVLRIESVKKE---DKGMYQCFVRNDRE 413
Score = 56.1 bits (135), Expect = 1e-09
Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 25/219 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNKTLHHNIAQG----IIMTNQSLV 63
+N +H+ + C I + V V W + + + A+ +++ + L
Sbjct: 143 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 202
Query: 64 LQRVNRQ-SAGNYTCVGFNIEGDGESNAFFLNVM---------YSPTCKPHQQRVLGVAR 113
++ V + +Y C + + + + + +
Sbjct: 203 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSG 262
Query: 114 QEKVNISCEVDANPPDVKFSWTFNNSA----ETVNVAQAHILRSGTLSVVAYSPNSELDY 169
+ + C P F W + V + SGTL + D
Sbjct: 263 SSTMALLCPAQGYPV-PVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE---DS 318
Query: 170 GTLICWGSNKIGHQRVPCVFHIVSAVTFH-PPFNQKLTR 207
G +C +N +G + V V + + ++ P Q +
Sbjct: 319 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF 357
Score = 51.5 bits (123), Expect = 4e-08
Identities = 18/126 (14%), Positives = 31/126 (24%), Gaps = 6/126 (4%)
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNA-FFLNVMYSPTCKPHQQRVLGVARQEKVNIS 120
+ + + + V G A P + + I
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 121 CEVDANPPDVKFSWTFNNSAETVNVAQAH-ILRSGTL---SVVAYSPNSELDYGTLICWG 176
C+ NP + W ++ +V I G L A E+ C
Sbjct: 61 CKASGNPM-PEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 177 SNKIGH 182
N+ G
Sbjct: 120 RNQFGS 125
Score = 49.9 bits (119), Expect = 2e-07
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ-----GIIMTNQSLVLQRVNRQS 71
+ SD +C P +V W+ I + +L + + + +
Sbjct: 726 FAQGSDAKVECKADGFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
G Y C N G G S ++V
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMISV 808
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 83.7 bits (207), Expect = 3e-19
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 5/168 (2%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS-AGNYTC 77
E+ V C++ P + W+ N + + + + SL++ N+ AG Y C
Sbjct: 22 EEKKVKLSCEVKGNPKP-HIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFN 137
+ N G S L Y K + + V R + + + C + ++ ++W FN
Sbjct: 81 IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN 140
Query: 138 NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
+ + +G L + + D G C +N + + +V
Sbjct: 141 EYPSYQDNRRFVSQETGNLYIAKVEKS---DVGNYTCVVTNTVTNHKV 185
Score = 68.3 bits (167), Expect = 6e-14
Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 14/197 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
R+ + ++ + C W N + + + + +L + +V +
Sbjct: 107 RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEK 166
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVM---------YSPTCKPHQQRVLGVARQEKVNIS 120
GNYTCV N + + ++ Y P + + + V +
Sbjct: 167 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 226
Query: 121 CEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
C NP W + + + +G L + + D G+ C N
Sbjct: 227 CFALGNPV-PTILWRRADG-KPIARKARRHKSNGILEIPNFQQE---DAGSYECVAENSR 281
Query: 181 GHQRVPCVFHIVSAVTF 197
G + +
Sbjct: 282 GKNVAKGQLTFYAQPNW 298
Score = 53.7 bits (129), Expect = 7e-09
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
H+ + V+++C P W N L I + +L + VN AG Y
Sbjct: 306 HVAMEESVFWECKANGRPKP-TYRWLKNGDPLLTR--DRIQIEQGTLNITIVNLSDAGMY 362
Query: 76 TCVGFNIEGDGESNAFFLNVM 96
CV N G S+A L+V+
Sbjct: 363 QCVAENKHGVIFSSA-ELSVI 382
Score = 43.3 bits (102), Expect = 2e-05
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 103 PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162
P + ++KV +SCEV NP W N + + + + + G+L + +
Sbjct: 12 PSHVMFPLDSEEKKVKLSCEVKGNPK-PHIRWKLNGTDVDIGMDFRYSVVDGSLLIN--N 68
Query: 163 PNSELDYGTLICWGSNKIG 181
PN D GT C +N G
Sbjct: 69 PNKTQDAGTYQCIATNSFG 87
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 82.3 bits (203), Expect = 9e-19
Identities = 31/191 (16%), Positives = 52/191 (27%), Gaps = 8/191 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVNRQSAGNY 75
+E++ +C I K W+ + K+ + + ++ SLV R G+Y
Sbjct: 18 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHY 77
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
C G S Y P + + C + P +W
Sbjct: 78 QCFAETPAGVASSRVISFRKTYLIA-SPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWK 136
Query: 136 FNNSAETVNVAQA------HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
S N G L + D +C N + V V
Sbjct: 137 KRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 196
Query: 190 HIVSAVTFHPP 200
+ + VT
Sbjct: 197 YEIKGVTKDNS 207
Score = 69.2 bits (169), Expect = 4e-14
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 14/170 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQRVNRQSA 72
K C + P + N K ++ N I + + + L+ + +
Sbjct: 224 AKAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 282
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVK 131
G YTC N G + ++ L V+ +P + ++V+ V + + V I C+V P P+V
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV- 341
Query: 132 FSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W+ N + + L + D G C +N+ G
Sbjct: 342 -VWSHNAKPLS---GGRATVTDSGLVIKGVKNG---DKGYYGCRATNEHG 384
Score = 58.8 bits (142), Expect = 1e-10
Identities = 29/185 (15%), Positives = 46/185 (24%), Gaps = 26/185 (14%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG------IIMTNQSLVLQRVNRQSA 72
E DC + P + W+ N + +L V ++
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 173
Query: 73 ---GNYTCVGFNIEGDGESNAFFLNVMYSP------TCKPHQQRVLG---VARQEKVNIS 120
Y C N D E + +P Q V + I
Sbjct: 174 SDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIY 233
Query: 121 CEVDANPPDVKFSWTFN----NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWG 176
C +NP ++ N N + + + L P D G C
Sbjct: 234 CMYGSNPM-GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE---DEGVYTCEV 289
Query: 177 SNKIG 181
N +G
Sbjct: 290 DNGVG 294
Score = 54.1 bits (130), Expect = 5e-09
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSA 72
+K+ DV C + +P V W HN K L +T+ LV++ V
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPLSGGR---ATVTDSGLVIKGVKNGDK 372
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G Y C N GD + V
Sbjct: 373 GYYGCRATNEHGDKYFET-LVQV 394
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 81.8 bits (202), Expect = 2e-18
Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRVNRQSAGN 74
V C+++ P + W+ N + L+ +++ + +L + R+ +G
Sbjct: 133 AFMGDTVLLKCEVIGDPM-PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGV 191
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG-----VARQEKVNISCEVDANPPD 129
Y C N N + ++ P + + + C V PP
Sbjct: 192 YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP- 250
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
F+W + + +L L + + + D GT C + K +
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD---DSGTYTCVVTYKNENISA 303
Score = 74.5 bits (183), Expect = 5e-16
Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 12/165 (7%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV 78
E D +C + PP W + + + ++ +L++ V +G YTCV
Sbjct: 235 EGKDAVLECCVSGYPPP-SFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCV 293
Query: 79 GFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
+ ++A L V+ P P + C V P +W
Sbjct: 294 VTYKNENISASA-ELTVLVPPWFLNHPSNLY---AYESMDIEFECAVSGKPV-PTVNWMK 348
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
N + I+ L ++ + D G C N+ G
Sbjct: 349 NGDVVIPS-DYFQIVGGSNLRILGVVKS---DEGFYQCVAENEAG 389
Score = 69.9 bits (171), Expect = 2e-14
Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 18/189 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVN-----RQ 70
+V +C + V ++W+ + L + + N SL++Q + +
Sbjct: 33 TMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP 92
Query: 71 SAGNYTCVG-FNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
G Y C G S + V + + + V + CEV +P
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESIT-AFMGDTVLLKCEVIGDPMP 151
Query: 130 VKFSWTFNNSAETVNVAQA----HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
W N + +N +L SG L + P D G C N +
Sbjct: 152 -TIHWQKNQ--QDLNPIPGDSRVVVLPSGALQISRLQPG---DSGVYRCSARNPASTRTG 205
Query: 186 PCVFHIVSA 194
+ +
Sbjct: 206 NEAEVRILS 214
Score = 49.1 bits (117), Expect = 3e-07
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E D+ F+C + P V W N + + I+ +L + V + G Y
Sbjct: 323 YAYESMDIEFECAVSGKPVP-TVNWMKNGDVVIPS-DYFQIVGGSNLRILGVVKSDEGFY 380
Query: 76 TCVGFNIEGDGESNAFFLNV 95
CV N G+ +S+A L V
Sbjct: 381 QCVAENEAGNAQSSA-QLIV 399
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 80.5 bits (198), Expect = 5e-18
Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 20/200 (10%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ- 60
+ + S ++E + C I V W+ N
Sbjct: 208 FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267
Query: 61 ------SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVA 112
+L + +G + C N G L V+ P + V
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTT-LEVVDKGFINIFPMINTTVFVN 326
Query: 113 RQEKVNISCEVDANPPDVKFSWTFNNSA-------ETVNVAQAHILRSGTLSVVAYSPNS 165
E V++ E +A P W + N + +++I L +
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT- 385
Query: 166 ELDYGTLICWGSNKIGHQRV 185
+ GT SN + +
Sbjct: 386 --EGGTYTFLVSNSDVNAAI 403
Score = 73.2 bits (179), Expect = 2e-15
Identities = 33/199 (16%), Positives = 53/199 (26%), Gaps = 27/199 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-------SLVLQRVNR 69
+ + +V + A P +W + N+T N+ L L R+
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG 384
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
G YT + N + + F + V P +L R + C P
Sbjct: 385 TEGGTYTFLVSNSDVNAAIA-FNVYVNTKP-------EILTYDRLVNGMLQCVAAGFPE- 435
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL-----------DYGTLICWGSN 178
W F E A + TL+ + GT+ C N
Sbjct: 436 PTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYN 495
Query: 179 KIGHQRVPCVFHIVSAVTF 197
+G F
Sbjct: 496 DVGKTSAYFNFAFKGNNKE 514
Score = 72.8 bits (178), Expect = 2e-15
Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 15/181 (8%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR-QSAGN 74
+ KED+D C + P V + + I ++++ V R
Sbjct: 125 YGKEDNDTLVRCP-LTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG---VARQEKVNISCEVDANPPDVK 131
C S F L V + P + E+ ++C + V
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243
Query: 132 FSWTFNNSA-------ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
+W NS + + + R TL++ + N D G +C+ +N G
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN---DSGVFMCYANNTFGSAN 300
Query: 185 V 185
V
Sbjct: 301 V 301
Score = 50.4 bits (120), Expect = 9e-08
Identities = 18/186 (9%), Positives = 37/186 (19%), Gaps = 19/186 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
++ ++ C V +W + Q + ++ + G Y
Sbjct: 47 IVRVGDEIRLLC--TDPGFV---KWTFEILDETNENKQN------EWITEKAEATNTGKY 95
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
TC + G S F+ + C + +S
Sbjct: 96 TCTNKH--GLSNSIYVFVRDPAKLFLVDRSLY---GKEDNDTLVRCPLTDPEVTN-YSLK 149
Query: 136 FNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAV 195
+ + + S L C + V
Sbjct: 150 GCQGKPLPKDLRFIPDPKAGIMI--KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPA 207
Query: 196 TFHPPF 201
P
Sbjct: 208 FKAVPV 213
Score = 33.9 bits (77), Expect = 0.028
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 20/117 (17%)
Query: 70 QSAGNYTCVGF----NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA 125
+ A ++ CV G + + P+ P + ++ V +++ + C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSV-SPGEPSPPSIHPGKSDLI-VRVGDEIRLLCTDPG 62
Query: 126 NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
WTF ET + + G C + + +
Sbjct: 63 FV-----KWTFEILDETNEN------KQNEWIT---EKAEATNTGKYTCTNKHGLSN 105
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 80.2 bits (197), Expect = 7e-18
Identities = 31/167 (18%), Positives = 49/167 (29%), Gaps = 7/167 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
V + PP +++W N L N I L + V+ + GNYT
Sbjct: 342 ATVGERVRIPAKYLGYPP-PEIKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYT 397
Query: 77 CVGFNIEGDGESNA-FFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFS 133
+ N + + L V P K V ++C V A PP
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 457
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
W + E N + + + + G I N+
Sbjct: 458 WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQF 504
Score = 68.6 bits (167), Expect = 6e-14
Identities = 35/208 (16%), Positives = 62/208 (29%), Gaps = 23/208 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQS------- 61
+ + + +C W + + H + QS
Sbjct: 229 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 288
Query: 62 ---LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEK 116
L + V R G YTC + +++ F + V P + ++ E+
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF-VRVHEKPFVAFGSGMESLVEATVGER 347
Query: 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWG 176
V I + PP + W N N I L+++ S D G
Sbjct: 348 VRIPAKYLGYPPP-EIKWYKNGIPLESNH---TIKAGHVLTIMEVSER---DTGNYTVIL 400
Query: 177 SNKIGHQRVPCVFHIVSAVTFHPPFNQK 204
+N I ++ V +V V P +K
Sbjct: 401 TNPISKEKQSHVVSLV--VYVPPQIGEK 426
Score = 67.5 bits (164), Expect = 2e-13
Identities = 21/186 (11%), Positives = 56/186 (30%), Gaps = 12/186 (6%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
++ V C + R+ K + + + + + AG C
Sbjct: 141 NKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 200
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKP---HQQRVLGVARQEKVNISCEVDANP-PDVKFS 133
+ +S ++ V+ + ++ EK+ ++C + F+
Sbjct: 201 EAKINDESYQSIM-YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPN-------SELDYGTLICWGSNKIGHQRVP 186
W + +S L++ + S + + + D G C S+ + ++
Sbjct: 260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319
Query: 187 CVFHIV 192
+
Sbjct: 320 TFVRVH 325
Score = 62.5 bits (151), Expect = 9e-12
Identities = 30/247 (12%), Positives = 54/247 (21%), Gaps = 58/247 (23%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS------------ 61
D + + C + A+PP + + W + N +
Sbjct: 432 VDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDF 491
Query: 62 -----------------------LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYS 98
L + Y C N G GE +V
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVI-SFHVTRG 550
Query: 99 PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNS-----------AETVNVAQ 147
P QE V++ C D + +W
Sbjct: 551 PEITLQPDMQ--PTEQESVSLWCTADRSTF-ENLTWYKLGPQPLPIHVGELPTPVCKNLD 607
Query: 148 AHILRSGTLSVVAYSPNSEL--------DYGTLICWGSNKIGHQRVPCVFHIVSAVTFHP 199
+ T+ + + + D G +C ++ +R V + P
Sbjct: 608 TLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAP 667
Query: 200 PFNQKLT 206
L
Sbjct: 668 TITGNLE 674
Score = 61.7 bits (149), Expect = 2e-11
Identities = 27/203 (13%), Positives = 49/203 (24%), Gaps = 31/203 (15%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--------------- 58
E V C + W +
Sbjct: 558 DMQPTEQESVSLWCTADRSTF-ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATM 616
Query: 59 -------NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG- 110
+ L+ + Q G+Y C+ + + + P L
Sbjct: 617 FSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV-VRQLTVLERVAPTITGNLEN 675
Query: 111 --VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168
+ E + +SC NPP + W +N + + L++ D
Sbjct: 676 QTTSIGESIEVSCTASGNPP-PQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE---D 731
Query: 169 YGTLICWGSNKIGHQRVPCVFHI 191
G C + +G +V F I
Sbjct: 732 EGLYTCQACSVLGCAKVEAFFII 754
Score = 57.5 bits (138), Expect = 4e-10
Identities = 19/194 (9%), Positives = 47/194 (24%), Gaps = 18/194 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-----SLVLQRVNRQS 71
IK ++ + C + +W N + + +L + +V
Sbjct: 43 IKANTTLQITC--RGQRDL---DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGND 97
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQR----VLGVARQEKVNISCEVDANP 127
G Y C + ++ SP + + + + V I C +
Sbjct: 98 TGAYKCFYRETDL-ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISN 156
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187
+V + + + ++ G + C +
Sbjct: 157 LNVSLCARYPEKRFVPDGNRISWDSKKGFTI---PSYMISYAGMVFCEAKINDESYQSIM 213
Query: 188 VFHIVSAVTFHPPF 201
+V +
Sbjct: 214 YIVVVVGYRIYDVV 227
Score = 57.1 bits (137), Expect = 6e-10
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+L + C PP ++ W +N+TL + + N++L ++RV +
Sbjct: 671 GNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRK 729
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
+ G YTC ++ G + A F + +
Sbjct: 730 EDEGLYTCQACSVLGCAKVEA-FFIIEGAQ 758
Score = 32.8 bits (74), Expect = 0.067
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 14/135 (10%)
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVK 131
+ CV G + + P + + + + I+C D+
Sbjct: 9 VALWLCVETRAASVGLPSV----SLDLPRLSIQKDILT-IKANTTLQITCRGQ---RDLD 60
Query: 132 FSWTFNNSAETVNVAQAHI---LRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188
+ W N S V L TL++ N D G C+ +
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGN---DTGAYKCFYRETDLASVIYVY 117
Query: 189 FHIVSAVTFHPPFNQ 203
+ +Q
Sbjct: 118 VQDYRSPFIASVSDQ 132
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 79.4 bits (195), Expect = 1e-17
Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 19/180 (10%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN--------IAQGIIMTNQSL 62
+L +K ++ C V V + + W NK L ++
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKP-HQQRVLGVARQEKVNISC 121
+ V R G YTC + + ++ + + + E+ S
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
A P ++ +WTF+ ++ Q + ++S N + G I N
Sbjct: 349 RFKAYPQ-IRCTWTFSR--KSFPCEQKGLDNGYSISK---FCNHKHQPGEYIFHAENDDA 402
Score = 64.3 bits (156), Expect = 2e-12
Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 19/179 (10%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH-HNIAQGIIMTNQSLVLQRVNRQS 71
P K ++ C +VP VEW + ++ + VL +
Sbjct: 147 RPYFRKMENQDALVCISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHELF--- 202
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVK 131
+ C N G + F +++ +P Q + E + I C+
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLF---LKVGEPLWIRCKAVHVNHGFG 259
Query: 132 FSWTFNNSA--------ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+W N A + ++R V + + N D G C S
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN---DTGYYTCSSSKHPSQ 315
Score = 64.0 bits (155), Expect = 2e-12
Identities = 27/199 (13%), Positives = 49/199 (24%), Gaps = 26/199 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
I + + F A P + + W + K+ Q + S+ ++ G Y
Sbjct: 338 IDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCE--QKGLDNGYSISKFCNHKHQPGEYI 394
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP-------- 128
N + F LN+ P +A SC D P
Sbjct: 395 FHAENDDAQFTKM-FTLNIRRKPQV---------LAEASASQASCFSDGYPLPSWTWKKC 444
Query: 129 ---DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
+ + + + S + S + C N +G
Sbjct: 445 SDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAI--KGFLVKCCAYNSLGTSCE 502
Query: 186 PCVFHIVSAVTFHPPFNQK 204
+ + F K
Sbjct: 503 TILLNSPGPFPFIQDGGTK 521
Score = 60.1 bits (145), Expect = 5e-11
Identities = 19/168 (11%), Positives = 53/168 (31%), Gaps = 13/168 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM-TNQSLVLQRVNRQSAGNY 75
+ + + + A + W + +L+ + S+V+ ++ AG Y
Sbjct: 60 VDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
+ + F +++ + + + + + C ++ P W
Sbjct: 119 LLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYF--RKMENQDALVCISESVPE-PIVEWV 174
Query: 136 FNNS-AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+S E+ +++ + EL + C N++G
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVL------HELFGTDIRCCARNELGR 216
Score = 35.4 bits (81), Expect = 0.009
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 17/133 (12%)
Query: 67 VNRQSAGNYTCVGFNIEGDGES------------NAFFLNVMYSPTCKP--HQQRVLGVA 112
Q CV N + + S + L P ++ + V
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61
Query: 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172
+ + VDA + W F +S + G +S+V G
Sbjct: 62 VSASITLQVLVDAPGN-ISCLWVFKHS-SLNCQPHFDLQNRGVVSMVILKMTET-QAGEY 118
Query: 173 ICWGSNKIGHQRV 185
+ + ++ + +
Sbjct: 119 LLFIQSEATNYTI 131
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 78.1 bits (192), Expect = 1e-17
Identities = 24/177 (13%), Positives = 43/177 (24%), Gaps = 10/177 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E + C I V + ++++ + Y
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTY 159
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPH---QQRVLGVARQEKVNISCEVDANPPDVKF 132
C + S +L V P + L R E I C
Sbjct: 160 VCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNV 219
Query: 133 SWTFNNSA----ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
++ + + + LS+ A D G C SN +G +
Sbjct: 220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ---DAGIYSCVASNDVGTRTA 273
Score = 62.7 bits (152), Expect = 4e-12
Identities = 22/184 (11%), Positives = 42/184 (22%), Gaps = 12/184 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
++ V C VEW +L + ++ G Y
Sbjct: 16 VEPGETVTLRCVSNG-----SVEWDGPISPY---WTLDPESPGSTLTTRNATFKNTGTYR 67
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
C G + L V + + V ++ + C + S
Sbjct: 68 CTELEDPMAGSTTI-HLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMR 126
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVT 196
+ + + D T +C ++ V+ V
Sbjct: 127 EGGRQVLRKTVYFFSPWRGFIIRKAKVL---DSNTYVCKTMVNGRESTSTGIWLKVNRVH 183
Query: 197 FHPP 200
PP
Sbjct: 184 PEPP 187
Score = 48.4 bits (115), Expect = 3e-07
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNK----TLHHNIAQGIIMTNQSLVLQRVNRQSA 72
C + V + + L+ + ++L L V+ Q A
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDA 257
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ 105
G Y+CV N G + V+ S H
Sbjct: 258 GIYSCVASNDVGTRTATM-NFQVVESHHHHHHH 289
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 78.3 bits (192), Expect = 1e-17
Identities = 37/209 (17%), Positives = 60/209 (28%), Gaps = 15/209 (7%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNK----TLHHNIAQGIIM 57
L ++D + C P V W K G +
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191
Query: 58 TNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKV 117
L + C+ + + LNV Y P ++ V
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLT-LNVQYEPEVTIEGFDGNWYLQRMDV 250
Query: 118 NISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177
++C+ DANPP ++ WT N + V ++ TL P + GT IC +
Sbjct: 251 KLTCKADANPPATEYHWTTLNGSLPKGV----EAQNRTLFFK--GPINYSLAGTYICEAT 304
Query: 178 NKIGHQRVPCVFHIVSAVTFHPPFNQKLT 206
N IG + + +T
Sbjct: 305 NPIGTRSGQ----VEVNITEAAALEHHHH 329
Score = 54.4 bits (130), Expect = 4e-09
Identities = 30/191 (15%), Positives = 52/191 (27%), Gaps = 28/191 (14%)
Query: 19 EDSDVYFDCDIVAVPP---VYKVEWRHNNKTLHHNIAQ--------------------GI 55
+DV C P + +V W+ + N+A
Sbjct: 28 IGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRP 87
Query: 56 IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP----TCKPHQQRVLGV 111
T+ ++ L R+ + G Y C + L VM P R
Sbjct: 88 SFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKG 147
Query: 112 ARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGT-LSVVAYSPNSELDYG 170
+ + +C P SW E + + T +S P+ E
Sbjct: 148 QDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQ 207
Query: 171 TLICWGSNKIG 181
+L C + +
Sbjct: 208 SLACIVNYHMD 218
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 77.7 bits (191), Expect = 2e-17
Identities = 29/192 (15%), Positives = 46/192 (23%), Gaps = 12/192 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ED D C + V + R + +Y
Sbjct: 101 VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQ 160
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPH---QQRVLGVARQEKVNISCEVDANPPDVKFS 133
C S + L V P L R E I C + +
Sbjct: 161 CSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 134 WTFNNSA----ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
NN+ + + + TL++ G C SN G F
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ---HAGNYSCVASNVQGKHSTSMFF 277
Query: 190 HIV--SAVTFHP 199
+V + + H
Sbjct: 278 RVVESAGNSHHH 289
Score = 63.8 bits (155), Expect = 1e-12
Identities = 22/184 (11%), Positives = 39/184 (21%), Gaps = 12/184 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+K + V C VEW + ++ L Q+ G Y
Sbjct: 16 VKPGATVTLRCVGNG-----SVEWDGPPSP---HWTLYSDGSSSILSTNNATFQNTGTYR 67
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
C G + L V + + V + + C + + S
Sbjct: 68 CTEPGDPLGGSAAI-HLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVR 126
Query: 137 NNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVT 196
+ ++ C + V V
Sbjct: 127 VRGRPLMRHTNYSFSPWHGFTIHRAKFI---QSQDYQCSALMGGRKVMSISIRLKVQKVI 183
Query: 197 FHPP 200
PP
Sbjct: 184 PGPP 187
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 75.6 bits (186), Expect = 2e-17
Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 21/179 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ F C P + W N K + N + +N L ++ + G Y
Sbjct: 16 AERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 74
Query: 77 CVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFS 133
C N G+ E A FL V P ++ +V + C+ + P P++ +
Sbjct: 75 CRATNKAGEDEKQA-FLQVFVQPHIIQLKNETTYEN----GQVTLVCDAEGEPIPEI--T 127
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL--------DYGTLICWGSNKIGHQR 184
W + + G + V +S L D G C +++IG +
Sbjct: 128 WKRAV--DGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ 184
Score = 43.3 bits (102), Expect = 1e-05
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 15 DHIKEDSDVYFDCDIVAVP-PVYKVEWRHN---------NKTLHHNIAQGIIMTNQSLVL 64
+ E+ V CD P P ++ W+ +K+L I + SL +
Sbjct: 104 ETTYENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 161
Query: 65 QRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ V +G Y C + G + + +L++
Sbjct: 162 KDVKLSDSGRYDCEAASRIGGHQKSM-YLDI 191
Score = 28.6 bits (64), Expect = 1.2
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 103 PHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAY 161
P + R E++ SC +P P + SW N N + L+V
Sbjct: 8 PQKSFNATAERGEEMTFSCRASGSPEPAI--SWFRNGKLIEENEKYILKGSNTELTV--- 62
Query: 162 SPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQK 204
D G +C +NK G + N+
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNET 105
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 75.2 bits (185), Expect = 2e-17
Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 24/176 (13%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
L P ++ ++ V C P ++W HN + Q + N
Sbjct: 8 KLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP--------THTQPSYRFKAN 59
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+G YTC S+ L V++ E + + C + P
Sbjct: 60 NNDSGEYTCQ---TGQTSLSDPVHLTVLFEWLVLQTPHLE--FQEGETIMLRCHSWKDKP 114
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
VK ++ N +Q T S+ + + G C G+
Sbjct: 115 LVKVTFFQN------GKSQKFSHLDPTFSIPQANHS---HSGDYHCTGNIGYTLFS 161
Score = 62.1 bits (151), Expect = 1e-12
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+E + C P+ KV + N K+ + + + + + N +G
Sbjct: 94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH------LDPTFSIPQANHSHSG 147
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
+Y C G S + V
Sbjct: 148 DYHCTGNIGYTLFSSKPVTITV 169
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 76.6 bits (188), Expect = 1e-16
Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 19/181 (10%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI--------IMTNQSL 62
+L +K ++ C V V + + W NK L + ++
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT-CKPHQQRVLGVARQEKVNISC 121
+ V R G YTC + + ++ + + + E+ S
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
A P ++ +WTF+ ++ Q + ++S N + G I N
Sbjct: 349 RFKAYPQ-IRCTWTFSR--KSFPCEQKGLDNGYSISK---FCNHKHQPGEYIFHAENDDA 402
Query: 182 H 182
Sbjct: 403 Q 403
Score = 64.7 bits (157), Expect = 1e-12
Identities = 21/193 (10%), Positives = 56/193 (29%), Gaps = 15/193 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-IAQGIIMTNQSLVLQRVNRQSAGNY 75
+ + + + A + W + +L+ S+V+ ++ AG Y
Sbjct: 60 VDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSW 134
+ + F +++ + + + + + C ++ P P V W
Sbjct: 119 LLFIQSEAT-NYTILFTVSIRNTLLYTLRRPYF--RKMENQDALVCISESVPEPIV--EW 173
Query: 135 TFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVS 193
+S E+ +++ + D C N++G + ++
Sbjct: 174 VLCDSQGESCKEESPAVVKKEEKVL---HELFGTDI---RCCARNELGRECTRLFTIDLN 227
Query: 194 AVTFHPPFNQKLT 206
L
Sbjct: 228 QTPQTTLPQLFLK 240
Score = 46.6 bits (110), Expect = 2e-06
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
I + + F A P + + W + K+ + S+ ++ G Y
Sbjct: 338 IDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQKG--LDNGYSISKFCNHKHQPGEYI 394
Query: 77 CVGFNIEGDGESNAFFLNVMYSP 99
N + LN+
Sbjct: 395 FHAENDDAQFTKMF-TLNIRSGT 416
Score = 36.2 bits (83), Expect = 0.005
Identities = 17/151 (11%), Positives = 36/151 (23%), Gaps = 23/151 (15%)
Query: 67 VNRQSAGNYTCVGFN----------------IEGDGESNAFFLNVMYSPTCKPHQQRVLG 110
Q CV N + E L S T
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE-- 59
Query: 111 VARQEKVNISCEVDANPPDVKFSWTFNN-SAETVNVAQAHILRSGTLSVVAYSPNSELDY 169
V + + VDA + W F + S ++ ++ +
Sbjct: 60 VDVSASITLQVLVDAPGN-ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTET---QA 115
Query: 170 GTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
G + + ++ + + I + + +
Sbjct: 116 GEYLLFIQSEATNYTILFTVSIRNTLLYTLR 146
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 75.3 bits (185), Expect = 1e-16
Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 12/176 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH-NIAQGIIMTNQSLVLQRVNRQSAGN 74
KE D CD+V+ P + W+H + + + I+++N L ++ + + G
Sbjct: 111 EFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 169
Query: 75 YTCVGFNIEGDGESNA-FFLNVMYSPTCKPHQQRV-LGVARQEKVNISCEVDANPPDVKF 132
Y C G + + + V PT + Q V + V + C+ D P
Sbjct: 170 YRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TM 228
Query: 133 SWTFNN----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
SWT + + E + S L++ N D +C NK G Q
Sbjct: 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN---DEAEYVCIAENKAGEQD 281
Score = 72.6 bits (178), Expect = 1e-15
Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 15/192 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-----NQSLVLQRVNRQS 71
I +F C + + W N Q I + + +L + N
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDV 130
AG Y CV +G + + K E I C+V ++ P +
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTI 132
Query: 131 KFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
W + +L + L + D GT C G +
Sbjct: 133 --IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT---DEGTYRCEGRILARGEINFKDI 187
Query: 190 HIVSAVTFHPPF 201
++ V P
Sbjct: 188 QVI--VNVPPTV 197
Score = 44.5 bits (105), Expect = 6e-06
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSAGN 74
V CD P + W + + + + + L ++ V++
Sbjct: 210 LGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAE 268
Query: 75 YTCVGFNIEGDGESNAFFLNVM 96
Y C+ N G+ +++ L V
Sbjct: 269 YVCIAENKAGEQDASI-HLKVF 289
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 74.2 bits (182), Expect = 2e-16
Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 26/193 (13%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+L P + ++ V C+++ +P +W N + S + +
Sbjct: 5 TLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------TPSYRITSAS 56
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+G Y C G S+ L + RV E + + C +
Sbjct: 57 VNDSGEYRCQR---GLSGRSDPIQLEIHRGWLLLQVSSRV--FTEGEPLALRCHAWKDKL 111
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188
+ N A + L+++ + + GT C G K +
Sbjct: 112 VYNVLYYRNGKAFKFFH------WNSNLTILKTNIS---HNGTYHCSGMGKHRYTSAG-- 160
Query: 189 FHIVSAVTFHPPF 201
+ F P
Sbjct: 161 ISVTVKELFPAPV 173
Score = 72.6 bits (178), Expect = 8e-16
Identities = 27/172 (15%), Positives = 44/172 (25%), Gaps = 13/172 (7%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
E + C VY V + N K N +L + + N G
Sbjct: 91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK------FFHWNSNLTILKTNISHNG 144
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ-EKVNISCEVDANPPDVKF 132
Y C G S + V V + V +SCE
Sbjct: 145 TYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGL 203
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
F+ + + + S ++ D G C + + G+
Sbjct: 204 QLYFSFYMGSKTLRGRN--TSSEYQILTARRE---DSGLYWCEAATEDGNVL 250
Score = 38.0 bits (88), Expect = 0.001
Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+ + E + V C+ + ++ + + T+ + R
Sbjct: 175 NASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSF--YMGSKTLRGRNTSSEYQILTARR 232
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVM 96
+ +G Y C +G+ + L +
Sbjct: 233 EDSGLYWCEAATEDGNVLKRSPELELQ 259
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 75.6 bits (186), Expect = 3e-16
Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 7/188 (3%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGN 74
+K+D ++C I P + KV W + + + + L + ++ + +G+
Sbjct: 303 VKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
YTC N G S+ L V P + V + V++ CE+ PP + SW
Sbjct: 362 YTCEAHNAAGSASSST-SLKVKEPPVFRKKPHPVE-TLKGADVHLECELQGTPP-FQVSW 418
Query: 135 TFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSA 194
+ E + + I+ L+ + D G C SN +G + +
Sbjct: 419 HKDKR-ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP 477
Query: 195 VTFHPPFN 202
F +
Sbjct: 478 PRFVKKLS 485
Score = 74.8 bits (184), Expect = 5e-16
Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 11/195 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--NQSLVLQRVNRQSAGN 74
+ F C + P+ K+ W +N+ + + + +L + +V + AG
Sbjct: 209 LALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 267
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
YTC N+ G +A L V P + V + E C++ +P +K W
Sbjct: 268 YTCYASNVAGKDSCSAQ-LGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLW 325
Query: 135 TFNNS--AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIV 192
+ + E+ + + L + S D G C N G +
Sbjct: 326 YKDETEIQESSKFRMSFVESVAVLEMYNLSVE---DSGDYTCEAHNAAGSASSSTSLKVK 382
Query: 193 SAVTF-HPPFNQKLT 206
F P +
Sbjct: 383 EPPVFRKKPHPVETL 397
Score = 69.4 bits (170), Expect = 4e-14
Identities = 40/218 (18%), Positives = 64/218 (29%), Gaps = 26/218 (11%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN--IAQGIIMTN 59
+ + R L H V F+C I P+ +V W + + L + + I
Sbjct: 98 RKLPPSFARKLKDVHETLGFPVAFECRINGSEPL-QVSWYKDGELLKDDANLQTSFIHNV 156
Query: 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG---VARQEK 116
+L + + ++ G Y C N G S+A L + P +A E
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSA-KLTLSEHEV-PPFFDLKPVSVDLALGES 214
Query: 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL--------D 168
C V P +K +W +N I G + + L D
Sbjct: 215 GTFKCHVTGTAP-IKITWAKDN---------REIRPGGNYKMTLVENTATLTVLKVTKGD 264
Query: 169 YGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQKLT 206
G C+ SN G + F
Sbjct: 265 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 302
Score = 68.3 bits (167), Expect = 9e-14
Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 15/204 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRV 67
L + C + P + ++ W + L A + N SLV+ +V
Sbjct: 10 EPLEHVEAAIGEPITLQCKVDGTPEI-RIAWYKEHTKLRSAPAYKMQFKNNVASLVINKV 68
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYS---PTCKPHQQRVLGVARQEKVNISCEVD 124
+ G YTC N G S+A L + P+ + V V C ++
Sbjct: 69 DHSDVGEYTCKAENSVGAVASSA-VLVIKERKLPPSFARKLKDVH-ETLGFPVAFECRIN 126
Query: 125 ANPPDVKFSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+ P ++ SW + + N+ + I TL ++ + G C SN +G
Sbjct: 127 GSEP-LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS---HVGQYNCSASNPLGT 182
Query: 183 QRVPCVFHIVSAVTFHPPFNQKLT 206
+S P F+ K
Sbjct: 183 ASSSAKLT-LSEHEVPPFFDLKPV 205
Score = 66.4 bits (162), Expect = 4e-13
Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 20/174 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
+ +DV+ +C++ PP +V W + + L + I S+ + V+
Sbjct: 396 TLKGADVHLECELQGTPPF-QVSWHKDKRELRSGKKYKIMSE--NFLTSIHILNVDSADI 452
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C N G + + P K + E+V + ++ P +
Sbjct: 453 GEYQCKASNDVGSDTCVG-SITLKAPPRFVKKLSDISTV---VGEEVQLQATIEGAEP-I 507
Query: 131 KFSWTFNN---SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+W + E+ N+ ++ TL P + G C N+ G
Sbjct: 508 SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA---NAGKYTCQIKNEAG 558
Score = 46.7 bits (111), Expect = 2e-06
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQRVNRQSAG 73
+V I P+ V W + + I ++ +L R +AG
Sbjct: 489 TVVGEEVQLQATIEGAEPI-SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547
Query: 74 NYTCVGFNIEGDGESNAFFLNVM 96
YTC N G E A L+V+
Sbjct: 548 KYTCQIKNEAGTQECFA-TLSVL 569
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 73.6 bits (180), Expect = 6e-16
Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 17/192 (8%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRH-NNKTLHHNIAQGIIMTNQSLVLQRVNRQSA 72
P KEDSD C + P V + + K+L ++ +
Sbjct: 100 PLFGKEDSDALVRC-PLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR 158
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH---QQRVLGVARQEKVNISCEVDANPPD 129
C S+ F L V + P + + + + + C +
Sbjct: 159 LCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS 218
Query: 130 VKFSWTFNNSA---------ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
V W N + + + R TL++ + + D G +C+ +N
Sbjct: 219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD---DSGVFMCYANNTF 275
Query: 181 GHQRVPCVFHIV 192
G V +V
Sbjct: 276 GSANVTTTLKVV 287
Score = 51.3 bits (122), Expect = 4e-08
Identities = 14/165 (8%), Positives = 33/165 (20%), Gaps = 13/165 (7%)
Query: 37 KVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96
V W + + ++ G YTC N G +++ ++ V
Sbjct: 39 FVRWTFKTYFNEMVENKK-----NEWIQEKAEATRTGTYTCSNSN----GLTSSIYVFVR 89
Query: 97 YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL 156
+ + C + +S + +
Sbjct: 90 DPAKLFLVGLPLF-GKEDSDALVRCPLTDPQVSQ-YSLIECDGKSLPTDLTFVPNPKAGI 147
Query: 157 SVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPF 201
++ + + C V P
Sbjct: 148 TI--KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV 190
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 73.6 bits (180), Expect = 7e-16
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 13/178 (7%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL-----HHNIAQGIIMTNQSLVLQRV 67
+ + C P ++ W + + G + +L
Sbjct: 125 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184
Query: 68 NRQSAGNYTCVGFNIEGDGESNA-FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN 126
++ N TC + + L V Y P Q + ++C+ +N
Sbjct: 185 SQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSN 244
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
P ++W+ + + + L + P + TLIC +N +G ++
Sbjct: 245 PEPTGYNWSTTMGP----LPPFAVAQGAQLLI---RPVDKPINTTLICNVTNALGARQ 295
Score = 62.8 bits (152), Expect = 4e-12
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+ + ++ CD + P W L + L+++ V++
Sbjct: 222 SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL----PPFAVAQGAQLLIRPVDK 277
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNV 95
C N G ++ + V
Sbjct: 278 PINTTLICNVTNALGARQAE-LTVQV 302
Score = 54.3 bits (130), Expect = 4e-09
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 29/188 (15%)
Query: 21 SDVYFDCDIVAVPP----VYKVEWRHNNKTLHHNI--------------------AQGII 56
V C + V ++ W + ++ + G
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75
Query: 57 MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK 116
+ N SL + + + GNYTC+ S +L V+ P Q+V + +
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ-LTGEPV 134
Query: 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVA---YSPNSELDYGTLI 173
C P + +W ++ N +Q SGT++V + P+S++D +
Sbjct: 135 PMARCVSTGGRPPAQITW-HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVT 193
Query: 174 CWGSNKIG 181
C ++
Sbjct: 194 CKVEHESF 201
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 71.7 bits (176), Expect = 7e-16
Identities = 40/170 (23%), Positives = 60/170 (35%), Gaps = 14/170 (8%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN-QSLVLQRVNRQSAGN 74
+ F C + + P ++ W N + + I N Q L + V G
Sbjct: 18 DALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGI 76
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDVK 131
Y C N G + L V P T P +++ K + C NP P V
Sbjct: 77 YCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII---EGLKAVLPCTTMGNPKPSV- 132
Query: 132 FSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW +SA N ++ +L SG+L + D G C N +G
Sbjct: 133 -SWIKGDSALREN-SRIAVLESGSLRIHNVQKE---DAGQYRCVAKNSLG 177
Score = 53.2 bits (128), Expect = 4e-09
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
I E C + P V W + L N ++ ++ + SL + V ++ AG Y
Sbjct: 111 KIIEGLKAVLPCTTMGNPK-PSVSWIKGDSALREN-SRIAVLESGSLRIHNVQKEDAGQY 168
Query: 76 TCVGFNIEGDGESNAFFLNVM 96
CV N G S L V
Sbjct: 169 RCVAKNSLGTAYSKLVKLEVE 189
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 71.5 bits (175), Expect = 9e-16
Identities = 28/176 (15%), Positives = 48/176 (27%), Gaps = 24/176 (13%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNI-----------AQGIIMTNQSLVLQRV 67
C + +V W + + L Q + L + +
Sbjct: 16 RGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL 75
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDA 125
G Y C+ F S ++ + P +P + VA N+SC+
Sbjct: 76 QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRT---VAANTPFNLSCQAQG 132
Query: 126 NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P V W + + A H +L V + + C N G
Sbjct: 133 PPEPVDLLWLQDA--VPLATAPGH-GPQRSLHVPGLN-----KTSSFSCEAHNAKG 180
Score = 51.8 bits (124), Expect = 1e-08
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ C P + W + L G L +++
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-----QRSLHVPGLNKTSSFS 172
Query: 77 CVGFNIEGDGESNAFFLNV 95
C N +G S + V
Sbjct: 173 CEAHNAKGVTTSRTATITV 191
Score = 27.6 bits (61), Expect = 2.8
Identities = 10/79 (12%), Positives = 20/79 (25%), Gaps = 8/79 (10%)
Query: 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL--- 167
AR + C++ + W + + + + G + S+L
Sbjct: 14 GARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRIT 73
Query: 168 -----DYGTLICWGSNKIG 181
D G C
Sbjct: 74 SLQLSDTGQYQCLVFLGHQ 92
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 73.4 bits (180), Expect = 1e-15
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 7/168 (4%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS-AGNYT 76
+ V C A PP W+ N L + LV+ + AG+Y
Sbjct: 20 SAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTF 136
CV N G S L + ++ + + V +C + P + + W
Sbjct: 79 CVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLL 138
Query: 137 NNSAETVNVAQ--AHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
N + +G L + + D G C+ ++ I
Sbjct: 139 NEFPNFIPADGRRFVSQTTGNLYIAKTEAS---DLGNYSCFATSHIDF 183
Score = 60.6 bits (147), Expect = 3e-11
Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 17/168 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ V +C P +++WR + + + + L +Q V+ + G Y
Sbjct: 218 YALTGQMVTLECFAFGNPVP-QIKWRKLDGSQT----SKWLSSEPLLHIQNVDFEDEGTY 272
Query: 76 TCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFS 133
C NI+G + + P + SC P
Sbjct: 273 ECEAENIKGRDTYQG-RIIIHAQPDWLDVITDTE---ADIGSDLRWSCVASGKPR-PAVR 327
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + + + + G L D G C NK G
Sbjct: 328 WLRD--GQPLASQNRIEVSGGELRFSKLVLE---DSGMYQCVAENKHG 370
Score = 58.7 bits (142), Expect = 1e-10
Identities = 34/208 (16%), Positives = 55/208 (26%), Gaps = 23/208 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRV 67
+P I E V F C P W N + T +L + +
Sbjct: 106 EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKT 165
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFF----------LNVMYSPTCKPHQQRVLGVARQEKV 117
GNY+C + + F Y+P+ K + V
Sbjct: 166 EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMV 225
Query: 118 NISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWG 176
+ C NP P + W + ++T + L + D GT C
Sbjct: 226 TLECFAFGNPVPQI--KWRKLDGSQTSKW----LSSEPLLHIQNVDFE---DEGTYECEA 276
Query: 177 SNKIGHQRVPCVFHIVSAVTF-HPPFNQ 203
N G I + + +
Sbjct: 277 ENIKGRDTYQGRIIIHAQPDWLDVITDT 304
Score = 54.1 bits (130), Expect = 6e-09
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
SD+ + C P V W + + L I ++ L ++ + +G Y
Sbjct: 305 EADIGSDLRWSCVASGKPRP-AVRWLRDGQPLASQ--NRIEVSGGELRFSKLVLEDSGMY 361
Query: 76 TCVGFNIEGDGESNAFFLNV 95
CV N G ++A L V
Sbjct: 362 QCVAENKHGTVYASA-ELTV 380
Score = 41.4 bits (97), Expect = 1e-04
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 103 PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYS 162
P + +EKV ++C ANPP + W N + + + L +G L V +
Sbjct: 11 PAHTLFPEGSAEEKVTLTCRARANPP-ATYRWKMNGTELKMGPDSRYRLVAGDL--VISN 67
Query: 163 PNSELDYGTLICWGSNKIG 181
P D G+ C +N G
Sbjct: 68 PVKAKDAGSYQCVATNARG 86
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 70.8 bits (173), Expect = 1e-15
Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 17/182 (9%)
Query: 19 EDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
S + C + V W L + G Q + + G Y+C
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----QKTEFKVDSDDQWGEYSC 66
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFN 137
V + + P K + + E + C+ ++ PP ++W
Sbjct: 67 VFLP----EPMGTANIQLHGPPRVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 138 NSAETVNVAQAHILR------SGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHI 191
+E + R G + + N E D G C G++ G + +
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Query: 192 VS 193
S
Sbjct: 182 RS 183
Score = 42.3 bits (99), Expect = 2e-05
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-----IIMTNQ---SLVL 64
+ +HI E C +VPPV W + + G + ++Q L +
Sbjct: 91 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHI 150
Query: 65 QRVNRQS-AGNYTCVGFNIEGDGESNAFFLNVMY 97
+ +N ++ G Y C G + +G ++ L V
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAII-TLRVRS 183
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 71.1 bits (174), Expect = 1e-15
Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 31/202 (15%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
L P + E V C P +W HN + S +
Sbjct: 11 FLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------ASSYFIDAAT 62
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+G Y C + S+ L V + V ++ +++ C N
Sbjct: 63 VDDSGEYRC---QTQLSTLSDPVQLEVHIGWLLLQAPRWV--FKEEDPIHLRCHSWKNTA 117
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR---- 184
K ++ N + + + D G+ C G +
Sbjct: 118 LHKVTYLQNGKGRKYFH------HNSDFYIPKATLK---DSGSYFCRGLVGSKNVSSETV 168
Query: 185 ---VPCVFHIVSAVTFHPPFNQ 203
+ + + +F PP Q
Sbjct: 169 QITITQGLAVSTISSFFPPGYQ 190
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 72.1 bits (177), Expect = 2e-15
Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 11/169 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGN 74
+K+D ++C I P + KV W + + + + L + ++ + +G+
Sbjct: 111 VKQDEHTRYECKIGGSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132
YTC N G S+ L V P KPH + V++ CE+ PP +
Sbjct: 170 YTCEAHNAAGSASSSTS-LKVKEPPVFRKKPHPVET---LKGADVHLECELQGTPP-FQV 224
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW + + I+ L+ + D G C SN +G
Sbjct: 225 SWHKDKRELRSG-KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 70.5 bits (173), Expect = 5e-15
Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 17/199 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGN 74
+ F C + P+ K+ W +N+ + N ++ +L + +V + AG
Sbjct: 17 LALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 75
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDVK 131
YTC N+ G +A L V P K R+ V + E C++ +P V
Sbjct: 76 YTCYASNVAGKDSCSA-QLGVQEPPRFIKKLEPSRI--VKQDEHTRYECKIGGSPEIKV- 131
Query: 132 FSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
W + + E+ + + L + S D G C N G
Sbjct: 132 -LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE---DSGDYTCEAHNAAGSASSSTSL 187
Query: 190 HIVSAVTF-HPPFNQKLTR 207
+ F P + +
Sbjct: 188 KVKEPPVFRKKPHPVETLK 206
Score = 49.4 bits (118), Expect = 2e-07
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGN 74
+ +DV+ +C++ PP +V W + + L I+ N S+ + V+ G
Sbjct: 204 TLKGADVHLECELQGTPPF-QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 262
Query: 75 YTCVGFNIEGDGESNAFFLNV 95
Y C N G + +
Sbjct: 263 YQCKASNDVGSYTCVG-SITL 282
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 70.1 bits (172), Expect = 3e-15
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 15/180 (8%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRV 67
L +++ S+ C + P V+W K + + + I + L++ V
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT-CKPHQQRVLG---VARQEKVNISCEV 123
A Y N G A L V P +G R E V+I
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTA-SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 124 DANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL-DYGTLICWGSNKIG 181
P P + W N ++ + + + + + E D G + N+ G
Sbjct: 129 SGKPDPVIT--WQKGQDLIDNN-GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Score = 43.6 bits (103), Expect = 1e-05
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSA 72
H V P + W+ + +N +I+T + V R+ A
Sbjct: 115 HALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G Y N G + L+V
Sbjct: 174 GFYVVCAKNRFGIDQKTV-ELDV 195
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 69.9 bits (171), Expect = 3e-15
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 17/173 (9%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
V C++ + + W N L +N + + + +G Y
Sbjct: 15 RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---RKNASNMEYRINKPRAEDSGEY 71
Query: 76 TCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFS 133
CV ++ ++NA + V +P T + + + C+ P ++
Sbjct: 72 HCV-YHFVSAPKANA-TIEVKAAPDITGHKRSEN---KNEGQDAMMYCKSVGYPH-PEWM 125
Query: 134 WTFNNSAETVNVAQA----HILRSGTLSVVA-YSPNSELDYGTLICWGSNKIG 181
W + ++ + I+ + + + D G C +N IG
Sbjct: 126 WRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
Score = 40.6 bits (95), Expect = 9e-05
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI----IM---TNQSLVLQRVN 68
+ E D C V P + WR + I+ I+ L + +
Sbjct: 103 NKNEGQDAMMYCKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161
Query: 69 RQS-AGNYTCVGFNIEGDGESNAFFLNV 95
G Y C N G + L V
Sbjct: 162 ITEDPGEYECNATNSIGSASVST-VLRV 188
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 69.9 bits (171), Expect = 3e-15
Identities = 30/173 (17%), Positives = 48/173 (27%), Gaps = 15/173 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT-----NQSLVLQRVNRQS 71
I +F C + + W N Q I + + +L + N
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPD 129
AG Y CV +G + + P Q E I C+V ++ P
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFK---EGEDAVIVCDVVSSLP- 129
Query: 130 VKFSWTFNNSAETVNV-AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + + +L + L + D GT C G
Sbjct: 130 PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT---DEGTYRCEGRILAR 179
Score = 48.7 bits (116), Expect = 2e-07
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVNRQSAGNY 75
KE D CD+V+ P + W+H + + +++N L ++ + + G Y
Sbjct: 112 FKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTY 170
Query: 76 TCVGFNIEGDGESNAFFLNVM 96
C G + GE N + V+
Sbjct: 171 RCEGRILAR-GEINFKDIQVI 190
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 69.4 bits (170), Expect = 3e-15
Identities = 30/172 (17%), Positives = 51/172 (29%), Gaps = 20/172 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ + V +C + + ++W + + + I ++ Q L L+ V R A
Sbjct: 14 VSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 72
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C + S +L V P T +P V +SCE P V
Sbjct: 73 GRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLA---VPPNAPFQLSCEAVGPPEPV 129
Query: 131 KFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
W + +L ++ C N G
Sbjct: 130 TIVWWRGTTKIGGPAPSPSVLNVTGVT----------QSTMFSCEAHNLKGL 171
Score = 54.8 bits (132), Expect = 9e-10
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ C+ V P + W + VL + ++
Sbjct: 110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTGVTQSTMFS 162
Query: 77 CVGFNIEGDGESNAFFLNV 95
C N++G S +++
Sbjct: 163 CEAHNLKGLASSRTATVHL 181
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 68.7 bits (168), Expect = 7e-15
Identities = 25/176 (14%), Positives = 44/176 (25%), Gaps = 24/176 (13%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
L P + E V C P +W HN + S +
Sbjct: 11 FLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ--------ASSYFIDAAT 62
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+G Y C S+ L V + V ++ +++ C N
Sbjct: 63 VNDSGEYRC---QTNLSTLSDPVQLEVHIGWLLLQAPRWV--FKEEDPIHLRCHSWKNTA 117
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
K ++ N + + + D G+ C G +
Sbjct: 118 LHKVTYLQNGKDRKYFH------HNSDFHIPKATLK---DSGSYFCRGLVGSKNVS 164
Score = 54.9 bits (132), Expect = 7e-10
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
KE+ ++ C ++KV + N K N + + + +G
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK------YFHHNSDFHIPKATLKDSG 150
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYS 98
+Y C G + S + + +
Sbjct: 151 SYFCRGLVGSKNVSSETVNITITQA 175
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 68.8 bits (168), Expect = 8e-15
Identities = 28/195 (14%), Positives = 60/195 (30%), Gaps = 23/195 (11%)
Query: 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SL 62
+S I E V F + KV + N K + + + +
Sbjct: 4 PFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCK--------------PHQQRV 108
++++ + G YT + + S + ++ K PH
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 123
Query: 109 LG--VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166
L V + V + C+V + W + ++V + H + G +++ + +
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDE--REISVDEKHDFKDGICTLLITEFSKK 181
Query: 167 LDYGTLICWGSNKIG 181
D G + G
Sbjct: 182 -DAGIYEVILKDDRG 195
Score = 56.5 bits (136), Expect = 3e-10
Identities = 9/74 (12%), Positives = 28/74 (37%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ + +V C + + + W + + + + +L++ +++ AG Y
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYE 187
Query: 77 CVGFNIEGDGESNA 90
+ + G +S
Sbjct: 188 VILKDDRGKDKSRL 201
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 67.9 bits (166), Expect = 2e-14
Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 10/182 (5%)
Query: 4 TRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSL 62
+ LT ++P K+ D C + + P V W ++N+ + ++ N +L
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 63 VLQRVNRQSAGNYTCVGFNI-EGDGESNAFFLNVMYSPT-CKPHQQRVLGVARQEKVNIS 120
+ +N+ G Y C G G+ + + V P P + R E++ S
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 121 CEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
C +P P + SW N N + L+V + D G +C +NK
Sbjct: 120 CRASGSPEPAI--SWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNK 174
Query: 180 IG 181
G
Sbjct: 175 AG 176
Score = 55.2 bits (133), Expect = 8e-10
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ F C P + W N K + N + +N L ++ + G Y
Sbjct: 110 AERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 168
Query: 77 CVGFNIEGDGESNAFFLNV 95
C N G+ E A FL V
Sbjct: 169 CRATNKAGEDEKQA-FLQV 186
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 69.9 bits (171), Expect = 2e-14
Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 9/194 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM--TNQSLVLQRVN----RQ 70
+ ++ +C+ P W N++ + + M + +LV+ + +
Sbjct: 29 VDPRDNILIECEAKGNPAP-SFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE 87
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDV 130
G Y C N G SN L V SP + V + + C P
Sbjct: 88 YEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP 147
Query: 131 KFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190
W ++ + +G L C H
Sbjct: 148 VIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD--MQTDYSCNARFHFTHTIQQKNPF 205
Query: 191 IVSAVTFHPPFNQK 204
+ +T +
Sbjct: 206 TLKVLTTRGVAERT 219
Score = 64.1 bits (156), Expect = 2e-12
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ D+ +C VP + W L + A+ N++L + V+ + +G Y
Sbjct: 234 VLRGMDLLLECIASGVPTP-DIAWYKKGGDLPSDKAK-FENFNKALRITNVSEEDSGEYF 291
Query: 77 CVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
C+ N G + V +P +P +A E + C + NP W
Sbjct: 292 CLASNKMGSIRHTI-SVRVKAAPYWLDEPKNLI---LAPGEDGRLVCRANGNPK-PTVQW 346
Query: 135 TFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
N ++ + T+ + C SN+ G
Sbjct: 347 MVNGEPLQSAPPNPNREVAGDTIIFRDTQIS---SRAVYQCNTSNEHG 391
Score = 58.3 bits (141), Expect = 2e-10
Identities = 36/211 (17%), Positives = 63/211 (29%), Gaps = 18/211 (8%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+L+P ++E + + C+ P + W ++ + N L V
Sbjct: 121 ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVML 180
Query: 70 Q-SAGNYTCVGFNIEGD--GESNAFFLNVMYSPTCK---------PHQQRVLGVARQEKV 117
Q +Y+C + N F L V+ + V R +
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 118 NISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGS 177
+ C P +W + A+ + L + S D G C S
Sbjct: 241 LLECIASGVPT-PDIAWYKKGGDLPSDKAK-FENFNKALRITNVSEE---DSGEYFCLAS 295
Query: 178 NKIGHQRVPCVFHIVSAVTF-HPPFNQKLTR 207
NK+G R + +A + P N L
Sbjct: 296 NKMGSIRHTISVRVKAAPYWLDEPKNLILAP 326
Score = 57.2 bits (138), Expect = 5e-10
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGN 74
+ D C P V+W N + L + +++ + S
Sbjct: 323 ILAPGEDGRLVCRANGNPKP-TVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAV 381
Query: 75 YTCVGFNIEGDGESNAFFLNVM 96
Y C N G +NA F++V+
Sbjct: 382 YQCNTSNEHGYLLANA-FVSVL 402
Score = 36.0 bits (83), Expect = 0.006
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 91 FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAH- 149
+ PT + V ++ + I CE NP F WT N+ N+A+
Sbjct: 9 IQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPA-PSFHWTRNS--RFFNIAKDPR 65
Query: 150 ---ILRSGTL-SVVAYSPNSELDYGTLICWGSNKIG 181
RSGTL E G C+ NK G
Sbjct: 66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFG 101
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 69.1 bits (169), Expect = 2e-14
Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 17/197 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAG 73
+ +F C + P ++W + + + ++ L + N + AG
Sbjct: 16 LSVGESKFFTCTAIGEPE--SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAG 73
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDV 130
Y C + +G + L + Q + E + C V ++P P V
Sbjct: 74 IYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE---FKQGEDAEVVCRVSSSPAPAV 130
Query: 131 KFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
SW ++N T++ + +L + L ++ + + D G C G + +
Sbjct: 131 --SWLYHNEEVTTISDNRFAMLANNNLQILNINKS---DEGIYRCEGRVEARGEIDFRDI 185
Query: 190 HIVSAVTFHPPFNQKLT 206
++ V QK
Sbjct: 186 IVIVNVPPAISMPQKSF 202
Score = 67.9 bits (166), Expect = 6e-14
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVNRQSAGN 74
K+ D C + + P V W ++N+ + ++ N +L + +N+ G
Sbjct: 109 EFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 75 YTCVGFNI-EGDGESNAFFLNVMYSPT-CKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132
Y C G G+ + + V P P + R E++ SC +P
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE-PAI 226
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW N N + L+V + D G +C +NK G
Sbjct: 227 SWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAG 272
Score = 54.1 bits (130), Expect = 4e-09
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ ++ F C P + W N K + N + +N L ++ + G Y
Sbjct: 206 AERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 264
Query: 77 CVGFNIEGDGESNAFFLNVMYSP 99
C N G+ E A FL V
Sbjct: 265 CRATNKAGEDEKQA-FLQVFVQH 286
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 67.2 bits (164), Expect = 3e-14
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+ + E ++ C VYKV + + + L + N ++ + + +G
Sbjct: 94 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------ENHNISITNATVEDSG 147
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCK 102
Y C G + D ES + V+ +P K
Sbjct: 148 TYYCTGKVWQLDYESEPLNITVIKAPREK 176
Score = 65.3 bits (159), Expect = 1e-13
Identities = 33/176 (18%), Positives = 51/176 (28%), Gaps = 24/176 (13%)
Query: 11 SLNPD--HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
SLNP I + +V C+ V +W HN TN SL +
Sbjct: 8 SLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAK 59
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
+ +G Y C + S +L V V V + + + C N
Sbjct: 60 FEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQASAEV--VMEGQPLFLRCHGWRNWD 114
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
K + + A + +S+ + D GT C G
Sbjct: 115 VYKVIYYKDGEALKYWY------ENHNISITNATVE---DSGTYYCTGKVWQLDYE 161
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 69.4 bits (170), Expect = 3e-14
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 14/175 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNN---------KTLHHNIAQGIIMTNQSLVLQRV 67
E+ V CD P ++ W+ K+L I + SL ++ V
Sbjct: 12 TYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
+G Y C + G + + +L++ Y+P +Q +NISC+V +NP
Sbjct: 71 KLSDSGRYDCEAASRIGGHQKSM-YLDIEYAPKFISNQTIYY-SWEGNPINISCDVKSNP 128
Query: 128 PDVKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P W + N +G ++ +P S+ D+G C +N IG
Sbjct: 129 P-ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 44.8 bits (106), Expect = 7e-06
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
E + + CD+ + PP + WR + L N+ L + +
Sbjct: 112 SWEGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDF 170
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP 99
G Y C N + L + P
Sbjct: 171 GRYNCTATN-HIGTRFQEYILALADVP 196
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 66.6 bits (163), Expect = 5e-14
Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 13/179 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRV 67
+ + K C IV P ++W K L + + + +L +
Sbjct: 12 KEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDA 125
++ G YTC+ N G+ E+++ L + +P + A + +
Sbjct: 71 EQEDEGVYTCIATNEVGEVETSS-KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIG 129
Query: 126 NP-PDVKFSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P P + +W + N+ + L + + + G SN G
Sbjct: 130 RPVPAM--TWFHGQKLLQNSENITIENTEHYTHLVMK--NVQRKTHAGKYKVQLSNVFG 184
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQS-AG 73
S + + P + W H K L ++ I T LV++ V R++ AG
Sbjct: 115 GAVGSTLRLHVMYIGRPVP-AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAG 173
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
Y N+ G ++ + +
Sbjct: 174 KYKVQLSNVFGTVDAIL-DVEI 194
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 66.8 bits (163), Expect = 7e-14
Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 35/206 (16%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ V C P V + +W NK + + L+ V+ + AG Y
Sbjct: 30 VLAGQFVKLCCRATGHPFV-QYQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYV 81
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG--------------VARQEKVNISCE 122
C N S L+V P + + + + C
Sbjct: 82 CRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV 141
Query: 123 VDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+P + W N + + + V GT C N
Sbjct: 142 AVGSPI-PHYQWFKNE--LPLTHETKKLYM---VPYV-----DLEHQGTYWCHVYNDRDS 190
Query: 183 QRVPCVFHIVSA--VTFHPPFNQKLT 206
Q V I+ HP ++ T
Sbjct: 191 QDSKKVEIIIDELNNLGHPDNKEQTT 216
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 66.2 bits (161), Expect = 9e-14
Identities = 35/185 (18%), Positives = 54/185 (29%), Gaps = 27/185 (14%)
Query: 21 SDVYFDCDI--VAVPPVYKVEWRHNNK--------TLHHN-IAQG----------IIMTN 59
V V++ P +V W +HH+ I
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 60 QSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNI 119
LV+ N GNY C E + L+V+ T H +R + +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKPLTLSVHSERSQ-FPDFSVLTV 124
Query: 120 SCEVDANPPDVKFSWTFNNSAETVNVAQ---AHILRSGTLSVVAYSPNSELDYGTLICWG 176
+C V+A P W E A + G+LSV + + + C G
Sbjct: 125 TCTVNAFPH-PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183
Query: 177 SNKIG 181
N
Sbjct: 184 KNDKE 188
Score = 38.5 bits (89), Expect = 6e-04
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG---IIMTNQSL---VLQRVNRQ 70
+ S + C + A P + V+W A + + SL V + +
Sbjct: 116 FPDFSVLTVTCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP 174
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNV 95
TCVG N + E++ +++
Sbjct: 175 WHLPVTCVGKNDK--EEAHGVYVSG 197
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 67.2 bits (163), Expect = 2e-13
Identities = 27/207 (13%), Positives = 52/207 (25%), Gaps = 17/207 (8%)
Query: 9 GRSLNPDHIKEDSDVYFDCDIVAVPPV--------YKVEWRHNNKTLHHNIAQGIIMTNQ 60
D C + + V W KT + N
Sbjct: 33 FGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR---PLNRRVKNG 89
Query: 61 SLVLQRVNRQSAGN-YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNI 119
L + + Y C GD ++ P+C P + G + +++
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYEL-GTHDKYGIDL 148
Query: 120 SCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
C + +W NN ++ + + L + D G C+
Sbjct: 149 YCGILYAKHYNNITWYKNNQELIIDGTK-YSQSGQNLIIHNPELE---DSGRYDCYVHYD 204
Query: 180 IGHQRVPCVFHIVSAVTFHPPFNQKLT 206
+ V +T P + +
Sbjct: 205 DVRIKNDIVVSRCKILTVIPSQDHRFK 231
Score = 36.3 bits (83), Expect = 0.004
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVY---KVEWRHNNKTL-------HHNIAQGIIMTNQSLVLQ 65
++ C V+ + ++W + + + + + +T +L +
Sbjct: 239 NVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFE 298
Query: 66 RVNRQSAGN-YTCVGFNIEGDGESNA 90
V + GN YTC G N D
Sbjct: 299 NVTEEYIGNTYTCRGHNYYFDKTLTT 324
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 65.6 bits (160), Expect = 2e-13
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 14/178 (7%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRV---- 67
+ + +C P +EW + + + +++ + SL R+
Sbjct: 20 IVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 68 -NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN 126
+R G Y CV N G+ S+ L V + VA E + C+
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRG 138
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
P+ SW + S + +R G L + + + D G +C G+N +G +
Sbjct: 139 HPEPTISWKKDGSPLDDKDER-ITIRGGKLMI---TYTRKSDAGKYVCVGTNMVGERE 192
Score = 55.6 bits (134), Expect = 6e-10
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ +C P + W+ + L + I + L++ + AG Y
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER-ITIRGGKLMITYTRKSDAGKYV 181
Query: 77 CVGFNIEGDGESNAFFLNVMYSPT 100
CVG N+ G+ ES L V+ P+
Sbjct: 182 CVGTNMVGERESEVAELTVLERPS 205
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 65.7 bits (160), Expect = 2e-13
Identities = 40/183 (21%), Positives = 56/183 (30%), Gaps = 20/183 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQSA 72
+ + V F C P + W N K G + SL+++ V
Sbjct: 30 AVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL----GVARQEKVNISCEVDANPP 128
GNYTCV N G L+V+ +P Q L V C+V ++
Sbjct: 89 GNYTCVVENEYGSINHTY-HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 147
Query: 129 DVKFSWTFNNSAETVNVAQ--AHILRSGTLSVVAYSPNSEL--------DYGTLICWGSN 178
W + L+ S + S L D G IC SN
Sbjct: 148 -PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Query: 179 KIG 181
IG
Sbjct: 207 YIG 209
Score = 44.1 bits (104), Expect = 8e-06
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 15/94 (15%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-------------IIMTNQSLVLQ 65
DV F C + + ++W + + + L L
Sbjct: 132 VGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
V AG Y C N G +A +L V+
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSA-WLTVLPKQ 223
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 64.8 bits (158), Expect = 2e-13
Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 15/171 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSLVLQRVNRQSAGN 74
+ +F C + P + + + + L + N + AG
Sbjct: 14 LSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 72
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDVK 131
Y C + +G + L + Q + E + C V ++P P V
Sbjct: 73 YRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFK---QGEDAEVVCRVSSSPAPAV- 128
Query: 132 FSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW ++N T++ + +L + L ++ + + D G C G +
Sbjct: 129 -SWLYHNEEVTTISDNRFAMLANNNLQILNINKS---DEGIYRCEGRVEAR 175
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 64.8 bits (158), Expect = 3e-13
Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 19/188 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQS- 71
++ F C PP + WR N K + ++ ++ L ++ V
Sbjct: 18 VRVGGVASFYCAARGDPPP-SIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRD 76
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL------GVARQEKVNISCEVDA 125
Y CV N GD S L + + + V ++C+
Sbjct: 77 DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136
Query: 126 NP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
NP P++ W N + ++ + + L+ G L + D G C N +G +
Sbjct: 137 NPTPNI--YWIKNQTKVDMSNPR-YSLKDGFLQIENSREE---DQGKYECVAENSMGTEH 190
Query: 185 VPCVFHIV 192
V
Sbjct: 191 SKATNLYV 198
Score = 56.3 bits (136), Expect = 4e-10
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
I+ V C + P + W N + + + + + L ++ + G Y
Sbjct: 122 IEVGHTVLMTCKAIGNPT-PNIYWIKNQTKVDMSNPR-YSLKDGFLQIENSREEDQGKYE 179
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQ 106
CV N G S A L V H
Sbjct: 180 CVAENSMGTEHSKATNLYVKVRRVGTKHHH 209
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 64.4 bits (157), Expect = 1e-12
Identities = 30/173 (17%), Positives = 48/173 (27%), Gaps = 11/173 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT----NQSLVLQRVNRQSA 72
++ S+ C + P V+W K + + + I L++ V A
Sbjct: 16 VRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKP----HQQRVLGVARQEKVNISCEVDANPP 128
Y N G A L V + R E V+I P
Sbjct: 75 TVYQVRATNQGGSVSGTA-SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+W N I+ S+V + D G + N+ G
Sbjct: 134 -PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS---LVLQR 66
+ H V P + W+ + +N +I+T +
Sbjct: 109 EGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAF 91
V R+ AG Y N G +
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVE 192
Score = 33.2 bits (76), Expect = 0.038
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Query: 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL----RSGTLSVVAYSPNSE 166
V Q + C+V +P W + + I L + + + +
Sbjct: 16 VRYQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74
Query: 167 LDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
Y +N+ G + H P
Sbjct: 75 TVY---QVRATNQGGSVSGTASLEVEVPAKIHLP 105
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 64.4 bits (156), Expect = 1e-12
Identities = 33/177 (18%), Positives = 51/177 (28%), Gaps = 23/177 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS-AGN 74
+ DV C + + W + + + + L L V N
Sbjct: 169 SVDVGDDVLLRCQVEGRGL-EQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKN 227
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFS 133
TC N G E + +NV P ++ I VD P P +
Sbjct: 228 VTCWAENDVGRAEVS-VQVNV-----SFPASVQLHTAVEMHHWCIPFSVDGQPAPSL--R 279
Query: 134 WTFNNSA---------ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W FN S E + A +R G L + + + G +N G
Sbjct: 280 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV---NNGNYTLLAANPFG 333
Score = 41.6 bits (97), Expect = 7e-05
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 99 PTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLS 157
PT K V + V + C+V+ W ++ V ++ L S L+
Sbjct: 159 PTLKVQVPNAS-VDVGDDVLLRCQVEGRGLEQA--GWILTELEQSATVMKSGGLPSLGLT 215
Query: 158 VVAYSPNSELDYGTLICWGSNKIGHQRV 185
+ + S+L+ + CW N +G V
Sbjct: 216 LANVT--SDLNRKNVTCWAENDVGRAEV 241
Score = 36.6 bits (84), Expect = 0.003
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 11/87 (12%)
Query: 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHN---------IAQGIIMTNQSLVLQRVNRQSA 72
+ P + W N L+ A + + L L + +
Sbjct: 263 HWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 321
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP 99
GNYT + N G ++ M +P
Sbjct: 322 GNYTLLAANPFGQASASI-MAAFMDNP 347
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 63.4 bits (154), Expect = 1e-12
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 21/203 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQSAG 73
+ + V F C P + W N + G I SLV++ V G
Sbjct: 27 VPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 85
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL----GVARQEKVNISCEVDANPPD 129
NYTCV N G L+V+ +P Q L V C+V ++
Sbjct: 86 NYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ- 143
Query: 130 VKFSWTFN---NSAETVNVAQAHILRSGTLSVVAYSPNSEL--------DYGTLICWGSN 178
W + N ++ ++ + + + L D G +C +N
Sbjct: 144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN 203
Query: 179 KIGHQRVPCVFHIVSAVTFHPPF 201
IG +
Sbjct: 204 FIGVAEKAFWLSVHGPRAAEEEL 226
Score = 45.7 bits (108), Expect = 3e-06
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 16/106 (15%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--------------IIMTNQSL 62
SDV F C + + ++W + + + + + L
Sbjct: 126 AVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRV 108
L V+ + G Y C N G E +L+V +
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAF-WLSVHGPRAAEEELVEA 229
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 64.1 bits (156), Expect = 2e-12
Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 19/172 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII--MTNQSLVLQRVNRQSAGN 74
++ C P ++ W + + + + G I + + +L ++ G
Sbjct: 120 VERTRTATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 75 YTCVGFNIEGDGESNA--FFLNVMYSP---TCKPHQQRVLGVARQEKVNISCEVDANPPD 129
Y CV N G S+ ++ V + P ++ VNI+C +P
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIM---PGGNVNITCVAVGSPM- 234
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W E + + L + D C + +G
Sbjct: 235 PYVKWMQGA--EDLTPEDDMPVGRNVLELTDVK-----DSANYTCVAMSSLG 279
Score = 61.4 bits (149), Expect = 1e-11
Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 20/203 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQRVNRQS-A 72
F C P +V W K ++ + I L +Q +
Sbjct: 18 GVSGGVASFVCQATGDPKP-RVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDE 76
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH------QQRVLGVARQEKVNISCEVDAN 126
Y CV N G+ +A L V+ ++ V R + C N
Sbjct: 77 NVYECVAQNSVGEITVHA-KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGN 135
Query: 127 P-PDVKFSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
P P++ +W + + + + LRSG L + + E D G C +N G +
Sbjct: 136 PDPEI--TWFKDFLPVDPSASNGRIKQLRSGALQI---ESSEETDQGKYECVATNSAGVR 190
Query: 184 RVPCVFHIVSAVTFHPPFNQKLT 206
V P F+
Sbjct: 191 YSSPANLYVRVQNVAPRFSILPM 213
Score = 51.0 bits (122), Expect = 5e-08
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
I +V C V P Y V+W + L M VL+ + + + NYT
Sbjct: 217 IMPGGNVNITCVAVGSPMPY-VKWMQGAEDLT----PEDDMPVGRNVLELTDVKDSANYT 271
Query: 77 CVGFNIEGDGESNAFFLNVMYSP--TCKPHQQ 106
CV + G E+ A + V P K H
Sbjct: 272 CVAMSSLGVIEAVA-QITVKSLPKAGTKHHHH 302
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 63.2 bits (153), Expect = 2e-12
Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 23/179 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E +++ C V P + V + + +Y
Sbjct: 106 FLTEITEITIPCR-VTDPQL-VVTLHEKKGDVALPV-------PYDHQRGFSGIFEDRSY 156
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ-EKVNISCEVDANPPDVKFSW 134
C + + +S+A+++ + + V V RQ E + + C V N V F W
Sbjct: 157 ICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEV-VNFEW 215
Query: 135 TFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL--------DYGTLICWGSNKIGHQRV 185
T+ V Y S L D GT C + + +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDM----PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD 270
Score = 49.3 bits (117), Expect = 2e-07
Identities = 19/170 (11%), Positives = 40/170 (23%), Gaps = 18/170 (10%)
Query: 37 KVEWRHNNKTLHHNIAQGIIMTNQS-LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
V W ++ +A+ T S L L + G Y C + G L +
Sbjct: 27 PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
Query: 96 MYSPTCKP-----HQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHI 150
++ + + ++ I C V V + + +
Sbjct: 87 FVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVV--TLHEKKGDVALP-----V 139
Query: 151 LRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
+ + IC + + V+
Sbjct: 140 PYDHQRGFSGIF-----EDRSYICKTTIGDREVDSDAYYVYRLQVSSINV 184
Score = 41.6 bits (97), Expect = 7e-05
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-------SLVLQRVN 68
+++ ++ C ++ V EW + K + L +
Sbjct: 192 VVRQGENITLMCIVIGNEVV-NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE 250
Query: 69 RQSAGNYTCVGFNIEGDGESNA 90
+ +G YTC D +
Sbjct: 251 LEDSGTYTCNVTESVNDHQDEK 272
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 62.3 bits (151), Expect = 3e-12
Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 25/188 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQ----------GIIMTNQSLVLQR 66
I E++ V C +VEW+ + + + + +
Sbjct: 16 IPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFF-LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA 125
V R+ G YTC+ G+ L V+ P+ KP + ++C
Sbjct: 75 VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPS-KPTVNIPSSATIGNRAVLTCSEQD 133
Query: 126 NPPDVKFSWTFNNS---------AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWG 176
P +++W + N + +G L S + D G C
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS---DTGEYSCEA 190
Query: 177 SNKIGHQR 184
N G
Sbjct: 191 RNGYGTPM 198
Score = 43.4 bits (102), Expect = 1e-05
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH---------HNIAQGIIMTNQSL 62
P + C P + W + + N + + T L
Sbjct: 114 NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL 173
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNA 90
V ++ G Y+C N G ++
Sbjct: 174 VFDPLSASDTGEYSCEARNGYGTPMTSN 201
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 62.7 bits (152), Expect = 4e-12
Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 20/149 (13%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQ 65
+S I E V F + KV + N K + + + + ++
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 171
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ----------- 114
++ + G YT + + S + ++ K + + R+
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 115 -----EKVNISCEVDANPPDVKFSWTFNN 138
V + C+V + W +
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDE 260
Score = 53.5 bits (128), Expect = 7e-09
Identities = 9/76 (11%), Positives = 28/76 (36%)
Query: 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGN 74
+ + +V C + + + W + + + + +L++ +++ AG
Sbjct: 231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGI 290
Query: 75 YTCVGFNIEGDGESNA 90
Y + + G +S
Sbjct: 291 YEVILKDDRGKDKSRL 306
Score = 47.3 bits (112), Expect = 9e-07
Identities = 15/136 (11%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ F+CD P + W + + + + + ++ + + +
Sbjct: 15 DDGVISLNFECD-KMTPKS-EFSWSKDYVSTEDS--PRLEVESKGNKTKMTFKDLGMDDL 70
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRV----------LGVARQEKVNISCE 122
G Y+C + +G S + H+ + + + + +V +
Sbjct: 71 GIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130
Query: 123 VDANPPDVKFSWTFNN 138
+ + K ++ FN
Sbjct: 131 AEKLSGNAKVNYIFNE 146
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 61.5 bits (149), Expect = 5e-12
Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 26/189 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG----------IIMTNQSLVLQR 66
+ E+ + C +VEW+ + + + ++ +
Sbjct: 13 VPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAF-FLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDA 125
V R+ G YTC+ G L V+ P+ KP V + ++C
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPS-KPTISVPSSVTIGNRAVLTCSEHD 130
Query: 126 NPPDVKFSWTFNNS----------AETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICW 175
P ++SW + +N + +SG L + D G C
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF---DSGEYYCQ 187
Query: 176 GSNKIGHQR 184
N G
Sbjct: 188 AQNGYGTAM 196
Score = 43.8 bits (103), Expect = 8e-06
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----------HHNIAQGIIMTNQSL 62
P + + C P + W + ++ N + I + L
Sbjct: 112 VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDL 171
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNA 90
+ V +G Y C N G +
Sbjct: 172 IFDPVTAFDSGEYYCQAQNGYGTAMRSE 199
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 61.6 bits (149), Expect = 1e-11
Identities = 37/185 (20%), Positives = 54/185 (29%), Gaps = 24/185 (12%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSAG 73
+ + V F C P + W N + G I SLV++ V G
Sbjct: 135 VPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 193
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL----GVARQEKVNISCEVDANPPD 129
NYTCV N G L+V+ +P Q L V C+V ++
Sbjct: 194 NYTCVVENKFGSIRQTY-TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ- 251
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLI-------------CWG 176
W + V L A + ++ + L C
Sbjct: 252 PHIQWLKHVEVNGSKVGPDGTPYVTVLK-TAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310
Query: 177 SNKIG 181
N IG
Sbjct: 311 GNSIG 315
Score = 57.3 bits (138), Expect = 4e-10
Identities = 32/212 (15%), Positives = 58/212 (27%), Gaps = 34/212 (16%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
V C P+ W + L + + +++ Q L + + + +G Y+
Sbjct: 20 FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS--ERVLVGPQRLQVLNASHEDSGAYS 77
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPH-----------------------QQRVLGVAR 113
C + + + S +++L V
Sbjct: 78 CRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPA 137
Query: 114 QEKVNISCEVDANP-PDVKFSWTFNN---SAETVNVAQAHILRSGTLSVVAYSPNSELDY 169
V C NP P + SW N E + +L + + P+ D
Sbjct: 138 ANTVRFRCPAAGNPTPSI--SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS---DR 192
Query: 170 GTLICWGSNKIGHQRVPCVFHIVSAVTFHPPF 201
G C NK G R ++ P
Sbjct: 193 GNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 224
Score = 43.8 bits (103), Expect = 2e-05
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 17/98 (17%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG---------------IIMTNQS 61
SDV F C + + ++W + + + +
Sbjct: 234 AVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
L L V + AG YTC+ N G +A +L V+ +
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSA-WLVVLPAE 329
Score = 27.3 bits (60), Expect = 4.4
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 99 PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSV 158
P +P QQ L + V +SC P W + + ++ ++ L V
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDG--TGLVPSERVLVGPQRLQV 65
Query: 159 VAYSPNSELDYGTLICWGSNKIGHQR 184
+ S D G C
Sbjct: 66 LNASHE---DSGAYSCRQRLTQRVLC 88
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 59.8 bits (145), Expect = 2e-11
Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 23/181 (12%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQS-A 72
F C P K+ W K + + + I + L +Q +
Sbjct: 18 GVSGGVASFICQATGDPRP-KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKP------HQQRVLGVARQEKVNISCEVDAN 126
Y CV N G+ + L V+ ++ V R + C N
Sbjct: 77 AIYECVASNNVGEISVST-RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135
Query: 127 P-PDVKFSWTFNN-----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKI 180
P P++ +W + S + Q G L + + D G C +N
Sbjct: 136 PDPEI--TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES---DQGKYECVATNSA 190
Query: 181 G 181
G
Sbjct: 191 G 191
Score = 52.5 bits (126), Expect = 7e-09
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL-----HHNIAQGIIMTNQSLVLQRVNRQS 71
++ C P ++ W + + + I Q + +L +++
Sbjct: 120 VERTRTATMLCAASGNPDP-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
G Y CV N G S L V
Sbjct: 179 QGKYECVATNSAGTRYSAPANLYV 202
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 59.8 bits (144), Expect = 2e-11
Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 12/186 (6%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
++ V C + R+ K + + + + + AG C
Sbjct: 22 NKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 81
Query: 78 VGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSW 134
+ +S + + V+ + ++ EK+ ++C + F+W
Sbjct: 82 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 135 TFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL--------DYGTLICWGSNKIGHQRVP 186
+ +S L++ + S L D G C S+ + ++
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQS-GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200
Query: 187 CVFHIV 192
+
Sbjct: 201 TFVRVH 206
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 59.5 bits (144), Expect = 2e-11
Identities = 31/178 (17%), Positives = 50/178 (28%), Gaps = 19/178 (10%)
Query: 17 IKEDSDVYFDCDIVA-VPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRVNRQSAG 73
+KE + CD P W N + + + + TN +L + V G
Sbjct: 20 VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKG 79
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ--------EKVNISCEVDA 125
NY+C + + F+ ++ P V + + V + C
Sbjct: 80 NYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG 139
Query: 126 NP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
NP PD+ W L + D G C N G
Sbjct: 140 NPVPDI--RWRKVLEPMPSTA--EISTSGAVLKIFNIQLE---DEGIYECEAENIRGK 190
Score = 45.3 bits (107), Expect = 3e-06
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+V +C + P + WR + + I + L + + + G Y
Sbjct: 125 ALMGQNVTLECFALGNPVP-DIRWRKVLEPMPST--AEISTSGAVLKIFNIQLEDEGIYE 181
Query: 77 CVGFNIEGDGESNAFFLNV 95
C NI G + A + V
Sbjct: 182 CEAENIRGKDKHQA-RIYV 199
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 60.7 bits (146), Expect = 3e-11
Identities = 23/187 (12%), Positives = 48/187 (25%), Gaps = 30/187 (16%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
L + E ++V C+ V + L+L+
Sbjct: 289 ILTKPEVSEGTEVTVKCEAHPRAKV-TLNGVPAQPLGP----------RAQLLLKATPED 337
Query: 71 SAGNYTCVGFNI---EGDGESNAFFLNVMYSPTCKPHQQ-RVLGVARQEKVNISCEVDAN 126
+ +++C + ++ L V+Y P + C+ N
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 397
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186
P + + + L G V GT +C + G
Sbjct: 398 PL-PELKCLKDGTFP---------LPIGESVTVTRD-----LEGTYLCRARSTQGEVTRE 442
Query: 187 CVFHIVS 193
+++S
Sbjct: 443 VTVNVLS 449
Score = 54.9 bits (131), Expect = 3e-09
Identities = 26/205 (12%), Positives = 49/205 (23%), Gaps = 16/205 (7%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+ P ++ C + P V K L A G + +
Sbjct: 92 APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP-AEVTTTVLVRR 150
Query: 69 RQSAGNYTCVGFNIEGDGESNAF-------FLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
N++C F L P P + + + C
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210
Query: 122 EVDANPP--DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
+D P + + + V + + S A + D GT +
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTV----TYGNDSFSAKASVSVTAEDEGTQRLTCAVI 266
Query: 180 IGHQRVPCVFHIVSAVTFHPPFNQK 204
+G+Q + + P
Sbjct: 267 LGNQSQETLQTVTIYSFPAPNVILT 291
Score = 52.6 bits (125), Expect = 2e-08
Identities = 24/199 (12%), Positives = 57/199 (28%), Gaps = 23/199 (11%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
+P ++ D+ C + + PV +V ++ L+ + G + + V +
Sbjct: 196 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND-SFSAKASVSVTAE 254
Query: 71 SAGNYTCVGFNIEGDGESNAFF---LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
G I G+ + +P + V +V + CE
Sbjct: 255 DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS---EGTEVTVKCEAHPRA 311
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPC 187
V + + L + E + + C + ++ Q +
Sbjct: 312 K-VTLNGVPAQP----------LGPRAQLLL---KATPEDNGRSFSCSATLEVAGQLIHK 357
Query: 188 VFHIVSAVTFHPPFNQKLT 206
V + P +++
Sbjct: 358 NQTRELRVLYGPRLDERDC 376
Score = 43.3 bits (101), Expect = 3e-05
Identities = 22/167 (13%), Positives = 41/167 (24%), Gaps = 12/167 (7%)
Query: 33 PPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFF 92
P + +E K L N V + N Q C N + F
Sbjct: 28 PMLLGIETPLPKKELLLP-------GNNRKVYELSNVQEDSQPMCY-SNCPDGQSTAKTF 79
Query: 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT-FNNSAETVNVAQAHIL 151
L V ++P + + + C+V+ P + E
Sbjct: 80 LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP 139
Query: 152 RSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFH 198
T +V+ + C + Q + + +
Sbjct: 140 AEVTTTVLVRRDH---HGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 59.9 bits (145), Expect = 4e-11
Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 14/184 (7%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+ + +V C + + + W + + + + +L++ +++ AG
Sbjct: 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 74
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ--------EKVNISCEVDA 125
Y + + G +S L + + ++ E + + V
Sbjct: 75 IYEVILKDDRGKDKSRL-KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133
Query: 126 NPPDVKFSWTFNNSA--ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
D+K +W+ N SA + V L + +PN D G + +
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN---DKGKYVMELFDGKTGH 190
Query: 184 RVPC 187
+
Sbjct: 191 QKTV 194
Score = 54.9 bits (132), Expect = 2e-09
Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 32/189 (16%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHH--NIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ + KV W HN + + + G+ L + G Y
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK-------------------- 116
F+ + + L+ QR+ A EK
Sbjct: 181 MELFDGKTGHQKTVD-LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA 239
Query: 117 VNISCEVDANPPDVKFSWTFNN----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTL 172
+N++C V +PP + SW N S + N+ + R+ ++ S D G
Sbjct: 240 LNLTCNVWGDPP-PEVSWLKNEKALASDDHCNL-KFEAGRTAYFTINGVSTA---DSGKY 294
Query: 173 ICWGSNKIG 181
NK G
Sbjct: 295 GLVVKNKYG 303
Score = 49.1 bits (117), Expect = 2e-07
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
I+E + C++ PP +V W N K L H N+ + V+ +
Sbjct: 234 IQEGKALNLTCNVWGDPPP-EVSWLKNEKALASDDHCNLKFEA-GRTAYFTINGVSTADS 291
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G Y V N G S+ ++V
Sbjct: 292 GKYGLVVKNKYGSETSDF-TVSV 313
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 59.6 bits (144), Expect = 6e-11
Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 17/182 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQS---- 71
+ +C P ++ W ++ T ++ I ++ LV +
Sbjct: 16 FSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 74
Query: 72 --AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
A Y C+ N G S + + + + + V R I C + + D
Sbjct: 75 VHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE-HVIRGNSAVIKCLIPSFVAD 133
Query: 130 VK--FSWTFNNSAETVNVAQA----HILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
SW + A+ +L SG L + E Y + C +++ +
Sbjct: 134 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI--REVGPEDGYKSYQCRTKHRLTGE 191
Query: 184 RV 185
Sbjct: 192 TR 193
Score = 57.3 bits (138), Expect = 5e-10
Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 23/175 (13%)
Query: 13 NPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQRVN 68
P + + C P W + + + + +L+++
Sbjct: 220 KPLELMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSP--TCKPHQQRVLGVARQEKVNISCEVDAN 126
+ +G Y CV N G L V P Q V +C+ N
Sbjct: 279 VEDSGKYLCVVNNSVGGESVET-VLTVTAPLSAKIDPPTQT---VDFGRPAVFTCQYTGN 334
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P SW + +A L + + D G C+ N
Sbjct: 335 PIK-TVSWMKD--------GKAIGHSESVLRIESVKKE---DKGMYQCFVRNDRE 377
Score = 55.3 bits (133), Expect = 2e-09
Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 24/218 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP--PVYKVEWRHNNKTLHHNIAQG----IIMTNQSLV 63
+N +H+ + C I + V V W + + + A+ +++ + L
Sbjct: 108 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167
Query: 64 LQRVNRQ-SAGNYTCVGFNIEGDGE--SNAFFLNV------MYSPTCKPHQQRVLGVARQ 114
++ V + +Y C + S V +P Q+ L +
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227
Query: 115 EKVNISCEVDANPPDVKFSWTFNNS----AETVNVAQAHILRSGTLSVVAYSPNSELDYG 170
+++ C P F W + V + SGTL + D G
Sbjct: 228 HTISLLCPAQGFPA-PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE---DSG 283
Query: 171 TLICWGSNKIGHQRVPCVFHIVSAVTFH-PPFNQKLTR 207
+C +N +G + V V + + ++ P Q +
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF 321
Score = 50.7 bits (121), Expect = 8e-08
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ F C P V W + K + H+ L ++ V ++ G Y
Sbjct: 318 TVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGHS--------ESVLRIESVKKEDKGMY 368
Query: 76 TCVGFNIEGDGESNAFFLNV 95
C N E++A L +
Sbjct: 369 QCFVRNDRESAEASA-ELKL 387
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 57.8 bits (139), Expect = 1e-10
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 5/137 (3%)
Query: 48 HHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQR 107
H + + + S+ + + G Y C G L V+ P+
Sbjct: 72 VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF-LLTVLVKPS-GTRCFV 129
Query: 108 VLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL 167
+ CE ++F W + ++T+ + S +SV S
Sbjct: 130 DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSE--- 186
Query: 168 DYGTLICWGSNKIGHQR 184
GT C N++G +
Sbjct: 187 YSGTYSCTVQNRVGSDQ 203
Score = 48.9 bits (116), Expect = 2e-07
Identities = 12/81 (14%), Positives = 28/81 (34%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
R + +D C+ + EW+ + + MT+ + ++ +
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASS 185
Query: 70 QSAGNYTCVGFNIEGDGESNA 90
+ +G Y+C N G +
Sbjct: 186 EYSGTYSCTVQNRVGSDQCML 206
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 57.0 bits (138), Expect = 2e-10
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 18/175 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ E S F+ I P +V W + + + + G+ ++ L + V + ++
Sbjct: 17 VLEGSTATFEAHISGFPV-PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANS 75
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP-----TCKPHQQRVLGVARQEKVNISCEVDANP 127
G Y+ N G S A L V + V + +V + V P
Sbjct: 76 GRYSLKATNGSGQATSTA-ELLVKAETAPPNFVQRLQSMT---VRQGSQVRLQVRVTGIP 131
Query: 128 -PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
P VK + + + + I + G L + + D GT +N +G
Sbjct: 132 TPVVK--FYRDGAEIQSS-LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Score = 51.3 bits (123), Expect = 2e-08
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
+++ S V + +P V++ + + I+Q SL++ + +
Sbjct: 115 VRQGSQVRLQVRVTGIPT-PVVKFYRDGAEIQSSLDFQISQE--GDLYSLLIAEAYPEDS 171
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G Y+ N G S A L V
Sbjct: 172 GTYSVNATNSVGRATSTA-ELLV 193
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 57.4 bits (138), Expect = 2e-10
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
+ +KE V C + + W N+++L + N L + + R+
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIGANIQ--WLFNSQSLQLTERMTLSQNNSILRIDPIKRE 173
Query: 71 SAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
AG Y C N SN+ L++++ P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
Score = 54.3 bits (130), Expect = 2e-09
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 30/210 (14%)
Query: 14 PDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQG------------------ 54
P + ED++V +P + W N T
Sbjct: 8 PPQVAEDNNVLLLV--HNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65
Query: 55 IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQ 114
II +N SL+ Q + + G YT + +V T Q V
Sbjct: 66 IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKEL 125
Query: 115 EKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLIC 174
+ V ++C +N W FN+ + + + L + P D G C
Sbjct: 126 DSVTLTCL--SNDIGANIQWLFNSQSLQLTERMTLSQNNSILRI---DPIKREDAGEYQC 180
Query: 175 WGSNKIGHQRVPCVFHIVSAVTFHPPFNQK 204
SN + +R + + P +
Sbjct: 181 EISNPVSVRRSNSIKLDI----IFDPHHHH 206
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 56.8 bits (137), Expect = 3e-10
Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 19/183 (10%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH--HNIAQGIIMTNQSL----VLQRVNR 69
+K++ +C + P +EW + + + + + + +L +Q
Sbjct: 20 VVKKNEPATLNCKVEGKPEP-TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE 78
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISC-EVDANPP 128
Q G Y CV N G S L + + + VA+ E + C P
Sbjct: 79 QDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE 138
Query: 129 DVKFSWTFNN-------SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + + ++ I+ G L + S +D G C N +G
Sbjct: 139 -PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI---SNVEPIDEGNYKCIAQNLVG 194
Query: 182 HQR 184
+
Sbjct: 195 TRE 197
Score = 54.9 bits (132), Expect = 1e-09
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-------IMTNQSLVLQRVNR 69
+ + +C P + W + L A I+ +L++ V
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQ 106
GNY C+ N+ G ES+ L V H
Sbjct: 180 IDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 53.1 bits (128), Expect = 6e-10
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAGN 74
+E V + C I +V W + L ++ I + L ++ + + G
Sbjct: 13 GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGT 72
Query: 75 YTCVGFNIEGDGESNAFFLNV 95
Y C N G+ S A L V
Sbjct: 73 YRCKVVNDYGEDSSYA-ELFV 92
Score = 28.8 bits (65), Expect = 0.39
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 111 VARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRS-GTLSVVAYSPNSELDY 169
V C+++ + +W F + N + I G + D
Sbjct: 13 GEEGGHVKYVCKIENYDQSTQVTWYFGV-RQLENSEKYEITYEDGVAILYVKDITKL-DD 70
Query: 170 GTLICWGSNKIG 181
GT C N G
Sbjct: 71 GTYRCKVVNDYG 82
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 56.2 bits (135), Expect = 8e-10
Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 24/211 (11%)
Query: 9 GRSLNPDHIKEDSDVYFDCDIVAVP------PVYKVEWRHNNKTLHHNIAQG--IIMTNQ 60
GR + E V C V P + W N+ + + +
Sbjct: 22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG 81
Query: 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK---- 116
+L L ++ +G Y C N + + L V + +
Sbjct: 82 ALWLLPALQEDSGTYVCTTRNASYCDKMSI-ELRVFENTDAFLPFISYPQILTLSTSGVL 140
Query: 117 --VNISCEVDANPPDVKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLI 173
++S K W ++ + N + + L V + D G
Sbjct: 141 VCPDLSEFTRDKTDV-KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE---DAGYYR 196
Query: 174 CWGSNKIG----HQRVPCVFHIVSAVTFHPP 200
C + + I P
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKEETIP 227
Score = 49.7 bits (118), Expect = 2e-07
Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 37/204 (18%)
Query: 14 PDHIKEDSDVYFDCDIVAVP----PVYKVEWRHNNKTLHHNIAQGI-IMTNQSLVLQRVN 68
P + + C ++ K++W ++ L + + + + L++ V
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVA 188
Query: 69 RQSAGNYTCVGFNIEGDGESNA---FFLNVMYSPTCKP--------HQQRVLGVARQEKV 117
+ AG Y CV + N L + LG ++
Sbjct: 189 LEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLG----SRL 244
Query: 118 NISCEVDAN----PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN--------- 164
I C+V + + WT N++ + + N
Sbjct: 245 TIPCKVFLGTGTPLTTMLW-WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303
Query: 165 --SELDYGTL-ICWGSNKIGHQRV 185
+ D C N + Q +
Sbjct: 304 PVTREDLHMDFKCVVHNTLSFQTL 327
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 55.9 bits (134), Expect = 1e-09
Identities = 23/189 (12%), Positives = 46/189 (24%), Gaps = 27/189 (14%)
Query: 21 SDVYFDCDIVAVP-----PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
D C + + K++W + K L + L++ V + GNY
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-NIHFSGVKDRLIVMNVAEKHRGNY 177
Query: 76 TCVGFNIEGDGESNA---FFLNVMYSPTCKP-----HQQRVLGVARQEKVNISCEVDANP 127
TC + + + V ++ + C V
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL------------DYGTLICW 175
D+ W +N S + + ++ + C+
Sbjct: 238 SDI-AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 296
Query: 176 GSNKIGHQR 184
N G
Sbjct: 297 AKNTHGIDA 305
Score = 51.6 bits (123), Expect = 3e-08
Identities = 21/197 (10%), Positives = 46/197 (23%), Gaps = 21/197 (10%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRVNRQSAGNYT 76
+ C + + W ++ + Q I + L + +G+Y
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 78
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG---VARQEKVNISC------EVDANP 127
CV N + + + + + + + C + + N
Sbjct: 79 CVVRNSSYCLRIK-ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNE 137
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG----HQ 183
K W + ++ L V+ + G C S
Sbjct: 138 LP-KLQWYKDCKPLLLD-NIHFSGVKDRLIVMNVAEK---HRGNYTCHASYTYLGKQYPI 192
Query: 184 RVPCVFHIVSAVTFHPP 200
F + P
Sbjct: 193 TRVIEFITLEENKPTRP 209
Score = 32.0 bits (72), Expect = 0.13
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 98 SPTCK-PHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAH--ILRSG 154
+ CK ++ +L + E C ++ N +W ++S V+ QA
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 155 TLSVVAYSPNSELDYGTLICWGSNKIGHQRV 185
L V D G C N R+
Sbjct: 63 KLWFVPAKVE---DSGHYYCVVRNSSYCLRI 90
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 55.3 bits (132), Expect = 2e-09
Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 17/194 (8%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80
V C V V W + ++ + L+L+ V +GNY+C
Sbjct: 22 DSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR-WAGMGRRLLLRSVQLHDSGNYSC--- 77
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV----DANPP---DVKFS 133
+ L V P + ++ + N+ CE + +
Sbjct: 78 -YRAGRPAGTVHLLVDV----PPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVR 132
Query: 134 WTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR-VPCVFHIV 192
N+ AE + S S P + + + ++ +G + F
Sbjct: 133 KFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGC 192
Query: 193 SAVTFHPPFNQKLT 206
+ PP N +T
Sbjct: 193 GILQPDPPANITVT 206
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 52.0 bits (125), Expect = 2e-09
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ S + C V P + +W N L H T + ++ V+ + G Y
Sbjct: 15 LMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTYW 66
Query: 77 CVGFNIEGDGESNAFFLNVMYSPT 100
C +N +S + +
Sbjct: 67 CHVYNDRDSQDSKKVEIIIDELNN 90
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 53.0 bits (127), Expect = 4e-09
Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 28/176 (15%)
Query: 19 EDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGI---------IMTNQSLVLQRVN 68
+ + + + +V W + + + I+ N L ++ +
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP 128
R +G Y ++ G N + KP ++CEV
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMI-----YWECSNATLTCEVLEGTD 124
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
V+ LRS ++Y + C N++ +
Sbjct: 125 -VELKLYQGK----------EHLRSLRQKTMSYQWTN--LRAPFKCKAVNRVSQES 167
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 51.2 bits (123), Expect = 4e-09
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+L + C P P ++ W +N+TL + + N++L ++RV
Sbjct: 15 GNLENQTTSIGESIEVSCTASGNPPP--QIMWFKDNETLVEDSGIVLKDGNRNLTIRRVR 72
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100
++ G YTC ++ G + A F + +
Sbjct: 73 KEDEGLYTCQACSVLGCAKVEA-FFIIEGAQE 103
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 53.0 bits (127), Expect = 5e-09
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 32/177 (18%)
Query: 21 SDVYFDCDIVAVP-PVYKVEWRH-----------NNKTLHHNIAQGIIMTNQSLVLQRVN 68
D+ D + + ++W K + N +L ++ +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 69 RQSAGNYTCVGFNIEGDGESNA-FFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
Y ++ +G F L + KP ++CEV N
Sbjct: 75 TDDQDIYKVSIYDTKGKNVLEKIFDLKI-QERVSKPKIS-----WTCINTTLTCEVM-NG 127
Query: 128 PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQR 184
D + + + + + ++Q I T S C NK+ +
Sbjct: 128 TDPELNLYQDG--KHLKLSQRVITHKWTTS----------LSAKFKCTAGNKVSKES 172
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 51.3 bits (123), Expect = 6e-09
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ D C P + WR + + ++ + N L ++ G YT
Sbjct: 20 VAVDGTFVLSCVATGSPV-PTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYT 78
Query: 77 CVGFNIEGDGESNAFFLNVMYSP 99
C+ G+ +A ++ V
Sbjct: 79 CIASTPSGEATWSA-YIEVQEFG 100
Score = 33.2 bits (76), Expect = 0.016
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 111 VARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169
VA +SC +P P + W + + ++ L +G L + D
Sbjct: 20 VAVDGTFVLSCVATGSPVPTI--LWRKDGVLVSTQDSRIKQLENGVLQIRYAKLG---DT 74
Query: 170 GTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
G C S G + P
Sbjct: 75 GRYTCIASTPSGEATWSAYIEVQEFGVPVQP 105
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 50.4 bits (121), Expect = 7e-09
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ E D C + P P ++ W N + + + + L +Q + G Y
Sbjct: 23 VIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQYARST-CEAGVAELHIQDALPEDHGTY 79
Query: 76 TCVGFNIEGDGESNAFFLNV 95
TC+ N G +A ++ V
Sbjct: 80 TCLAENALGQVSCSA-WVTV 98
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 52.3 bits (125), Expect = 8e-09
Identities = 22/187 (11%), Positives = 48/187 (25%), Gaps = 32/187 (17%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-----------------IMTNQS 61
V + A V + W N +L + + S
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNIS- 120
L L + + G+Y + + + +++ L ++ + + +
Sbjct: 72 LQLSNLKMEDTGSYRAQ-ISTKTSAKLSSYTLRILRQLR-NIQVTNHSQLFQNMTCELHL 129
Query: 121 -CEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
C V+ +V F W + + L+V S C N
Sbjct: 130 TCSVEDADDNVSFRWEALGNT---------LSSQPNLTVSWDPRIS--SEQDYTCIAENA 178
Query: 180 IGHQRVP 186
+ +
Sbjct: 179 VSNLSFS 185
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 53.3 bits (127), Expect = 9e-09
Identities = 27/174 (15%), Positives = 48/174 (27%), Gaps = 25/174 (14%)
Query: 34 PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNA--- 90
+ W + + +I +L + GNYTCV E +
Sbjct: 153 VKPTITWYMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRT 210
Query: 91 FFLNVMYSPTCK-------PHQQRVLGVARQEKVNISCEVDANP---PDVKFSWTFNNSA 140
+ V+ SP P+ V E++ I C V + + WT +
Sbjct: 211 LTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKK 270
Query: 141 ETVNVAQAHILRSGTLSVVAYSPNSEL---------DYGTL-ICWGSNKIGHQR 184
I S + S +++ D +C + G
Sbjct: 271 PDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVA 324
Score = 38.3 bits (88), Expect = 0.001
Identities = 20/138 (14%), Positives = 34/138 (24%), Gaps = 26/138 (18%)
Query: 16 HIKEDSDVYFDCDI----------VAVPPVYKVEWRHNNKTLHHNIAQG-------IIMT 58
+ ED C + A + W + I
Sbjct: 18 QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE 77
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQR--------VLG 110
L + GNYTC+ N + F L V+ +C + G
Sbjct: 78 KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVA-FPLEVVQKDSCFNSPMKLPVHKLYIEYG 136
Query: 111 VARQEKVNISCEVDANPP 128
+ R N+ ++
Sbjct: 137 IQRITCPNVDGYFPSSVK 154
Score = 30.2 bits (67), Expect = 0.48
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 17 IKEDSDVYFDCDIVAVP---PVYKVEWRHNNKTL-----HHNIAQGIIMT-------NQS 61
+ ++ C + +V W + K I + I + Q
Sbjct: 238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQI 297
Query: 62 LVLQRVNRQ-SAGNYTCVGFNIEGDGESNAF 91
L +++V + +Y C + +G+ A
Sbjct: 298 LSIKKVTSEDLKRSYVCHARSAKGEVAKAAK 328
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 52.2 bits (125), Expect = 1e-08
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 26/140 (18%)
Query: 22 DVYFDCDIVAVPPVYKVEWRHNNKTLHHN--IAQGIIMTNQSLVLQRVNRQSAGNYTCVG 79
+ + KV W HN + ++ + G+ L + G Y
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 78
Query: 80 FNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK--------------------VNI 119
F+ + + L+ QR+ A EK +N+
Sbjct: 79 FDGKTGHQKTV-DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL 137
Query: 120 SCEVDANP-PDVKFSWTFNN 138
+C V +P P+V W N
Sbjct: 138 TCNVWGDPPPEVS--WLKNE 155
Score = 49.9 bits (119), Expect = 7e-08
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-----SLVLQRVNRQS 71
I+E + C++ PP +V W N K L + + + V+
Sbjct: 129 IQEGKALNLTCNVWGDPPP-EVSWLKNEKALAQT--DHCNLKFEAGRTAYFTINGVSTAD 185
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
+G Y V N G S+ ++V
Sbjct: 186 SGKYGLVVKNKYGSETSDF-TVSV 208
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 52.9 bits (126), Expect = 1e-08
Identities = 25/184 (13%), Positives = 47/184 (25%), Gaps = 12/184 (6%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYK--VEWRHNNKTLHHNIAQGIIMTNQSLVLQRVN 68
+ P ++ C + P V K L A G + +
Sbjct: 92 APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEP-AEVTTTVLVRR 150
Query: 69 RQSAGNYTCVGFNIEGDGESNAF-------FLNVMYSPTCKPHQQRVLGVARQEKVNISC 121
N++C F L P P + + + C
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210
Query: 122 EVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+D P + + +N + + + S A + D GT + +G
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTVTY--GNDSFSAKASVSVTAEDEGTQRLTCAVILG 268
Query: 182 HQRV 185
+Q
Sbjct: 269 NQSQ 272
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 50.0 bits (120), Expect = 1e-08
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQ 65
L I E V F C + P K+ W + K + I + SL
Sbjct: 13 MKLKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 71
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
GNYT + N +G L V
Sbjct: 72 ASTLDDDGNYTIMAANPQGRISCTG-RLMV 100
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 51.4 bits (123), Expect = 1e-08
Identities = 27/181 (14%), Positives = 49/181 (27%), Gaps = 36/181 (19%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRH--NNKTLHHNIAQGIIMT-------------NQSLV 63
S+V + ++ W H N K L + + N +L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEV 123
+ V+++ G+Y + + + V Y KP ++CEV
Sbjct: 73 IYNVSKEDRGDYYMRMLH--ETEDQWKITMEV-YEMVSKPMIYW-----ECSNATLTCEV 124
Query: 124 DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
DV+ LRS + S C N++ +
Sbjct: 125 L-EGTDVELKLYQGKE----------HLRSLRQKTM--SYQWTNLRAPFKCKAVNRVSQE 171
Query: 184 R 184
Sbjct: 172 S 172
Score = 29.9 bits (67), Expect = 0.45
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
P E S+ C+++ V +++ + L + + +
Sbjct: 109 PMIYWECSNATLTCEVLEGTDV-ELKLYQGKEHLR---------SLRQKTMSYQWTNLRA 158
Query: 74 NYTCVGFN 81
+ C N
Sbjct: 159 PFKCKAVN 166
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 49.6 bits (119), Expect = 1e-08
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQ 65
+ + + F ++ + P +V+W HN L + I TN +L +
Sbjct: 13 LRMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQES--SKIHYTNTSGVLTLEIL 69
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ +G Y V N +G+ A L+V
Sbjct: 70 DCHTDDSGTYRAVCTNYKGEASDYA-TLDV 98
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 50.1 bits (120), Expect = 1e-08
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQS 71
+ E V +C I A+P P K+ W+ NN+ + N + + + +L+++ VN++
Sbjct: 27 VLEGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKD 84
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSP 99
AG YT N G N L+V P
Sbjct: 85 AGWYTVSAVNEAGVTTCNT-RLDVTARP 111
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 48.8 bits (117), Expect = 3e-08
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQRVN 68
L ++E DV + P V W N + + + + L +
Sbjct: 12 LMDQSVREGQDVIMSIRVQGEPKP-VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAE 70
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNV 95
R AG YTC N G + A L V
Sbjct: 71 RGDAGFYTCKAVNEYGARQCEA-RLEV 96
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 50.9 bits (121), Expect = 3e-08
Identities = 26/172 (15%), Positives = 49/172 (28%), Gaps = 11/172 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ V C WR + + T +L + V+ + +Y
Sbjct: 13 AQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLNGKVT-NEGTTSTLTMNPVSFGNEHSYL 70
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSW 134
C E + + S P + + + + C V P ++
Sbjct: 71 CTATC-ESRKLEKGIQVEIY-SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 135 TFNN----SAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+ S E + A L + +L V ++P E L+C I
Sbjct: 129 LKGDHLMKSQEFLEDADRKSLETKSLEVT-FTPVIEDIGKVLVCRAKLHIDE 179
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 48.5 bits (116), Expect = 4e-08
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ D C P + W T + I +L ++ + G YT
Sbjct: 20 LAVDGTALLKCKATGDPLP-VISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYT 78
Query: 77 CVGFNIEGDGESNAFFLNV 95
CV + G+ +A L+V
Sbjct: 79 CVATSSSGETSWSA-VLDV 96
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 48.2 bits (115), Expect = 5e-08
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ + C + + W + L + +T + + +Q +G Y
Sbjct: 15 VHPGDLLQLRCRLRDDVQ--SINWLRDGVQLAES--NRTRITGEEVEVQDSVPADSGLYA 70
Query: 77 CVGFNIEGDGESNAFFLNVMYSPTCKP 103
CV + G ++ F +NV + P
Sbjct: 71 CVTSSPSGS-DTTYFSVNVSDALPSGP 96
Score = 29.7 bits (67), Expect = 0.21
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 98 SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLS 157
S + + L V + + + C + + + +W + + + + +
Sbjct: 3 SGSSGVEVESFL-VHPGDLLQLRCRLRDDVQSI--NWLRDG--VQLAESNRTRITGEEVE 57
Query: 158 VVAYSPNSELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
V P D G C S+ G ++ A+ P
Sbjct: 58 VQDSVPA---DSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 48.1 bits (115), Expect = 6e-08
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRVNRQSAG 73
+ E F CD P P V W + L + + T + + V G
Sbjct: 26 VYEGESARFSCDTDGEPVP--TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 83
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
NY+ V N EG E+ L +
Sbjct: 84 NYSVVVENSEGKQEAEF-TLTI 104
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 47.9 bits (114), Expect = 6e-08
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
++ +DV F C + P Y + W + + + N L ++ V AG Y
Sbjct: 21 SVRPGADVTFICTAKSKSPAYTLVWTRLHNGK---LPSRAMDFNGILTIRNVQPSDAGTY 77
Query: 76 TCVGFNIEGDGESNAFFLNV 95
C G N+ + A L+V
Sbjct: 78 VCTGSNMFAMDQGTA-TLHV 96
Score = 28.2 bits (63), Expect = 0.72
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 99 PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSV 158
+QR V V C + P WT ++ + + + +G L++
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK---LPSRAMDFNGILTI 66
Query: 159 VAYSPNSELDYGTLICWGSNKIG 181
P+ D GT +C GSN
Sbjct: 67 RNVQPS---DAGTYVCTGSNMFA 86
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 49.7 bits (118), Expect = 9e-08
Identities = 23/195 (11%), Positives = 46/195 (23%), Gaps = 23/195 (11%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-----------IAQGIIMTNQSLVLQRVNR 69
S V +C ++E + N + + + + + V
Sbjct: 18 SSVSLEC-DFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-P 128
+ +G Y C+ V G +V ++C+ P
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG---TGEVQLTCQARGYPLA 133
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCV 188
+V SW + + + G V + C N +
Sbjct: 134 EV--SWQNVSVPANTSHIRT---PEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT--S 186
Query: 189 FHIVSAVTFHPPFNQ 203
I P +
Sbjct: 187 AIIDPLSRMEPKVPR 201
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 47.4 bits (113), Expect = 1e-07
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ V C++ A P ++ W + L + + L+L + Q G Y+
Sbjct: 22 VAPGGTVTLTCEVPAQPSP-QIHWMKDGVPLP-------LPPSPVLILPEIGPQDQGTYS 73
Query: 77 CVGFNIEGDGESNAFFLNVMYSP 99
CV + + + + P
Sbjct: 74 CVATHSSHGPQESRAVSISIIEP 96
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 48.3 bits (115), Expect = 1e-07
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQR 66
+++ + E S FDC + P +V W ++ + + I + SL +
Sbjct: 46 KTILDMEVVEGSAARFDCKVEGYPD-PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISE 104
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK 116
V YTC N G+ A L V + +E+
Sbjct: 105 VCGDDDAKYTCKAVNSLGEATCTA-ELLVETMGKEGEGEGEGEEDEEEEE 153
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 49.8 bits (118), Expect = 2e-07
Identities = 19/188 (10%), Positives = 47/188 (25%), Gaps = 29/188 (15%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
H+ + + + V+ R I ++L + ++ Q +G +
Sbjct: 107 HLLQGQSLTLTLESPPGSSP-SVQCRSPRGK--------NIQGGKTLSVSQLELQDSGTW 157
Query: 76 TCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWT 135
TC + E + V+ + G + ++ V+ + W
Sbjct: 158 TCTVLQNQKKVEFKI-DIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQ 216
Query: 136 FNNSA------------------ETVNVAQAHILRSGTLSVVAYSPNSEL-DYGTLICWG 176
++ + + + L + + G L
Sbjct: 217 AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL 276
Query: 177 SNKIGHQR 184
K G
Sbjct: 277 EAKTGKLH 284
Score = 46.7 bits (110), Expect = 2e-06
Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 42/183 (22%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT------------------- 58
K+ V C + + W+++N+ +
Sbjct: 7 KKGDTVELTCT-ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVN 118
N L+++ + + + Y C + + + + F L + G + +
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA------NSDTHLLQG----QSLT 115
Query: 119 ISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
++ E +I TLSV D GT C
Sbjct: 116 LTLESPPGSS-PSVQCRSPRG--------KNIQGGKTLSVSQLELQ---DSGTWTCTVLQ 163
Query: 179 KIG 181
Sbjct: 164 NQK 166
Score = 36.7 bits (84), Expect = 0.003
Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 18/87 (20%)
Query: 61 SLVLQRVNRQSA--GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVN 118
L L + Q A GN T G L VM + Q + N
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGKLHQEVN-LVVMRAT--------------QLQKN 300
Query: 119 ISCEVD-ANPPDVKFSWTFNNSAETVN 144
++CEV P + S N V+
Sbjct: 301 LTCEVWGPTSPKLMLSLKLENKEAKVS 327
Score = 29.4 bits (65), Expect = 0.84
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 10/61 (16%)
Query: 19 EDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
C++ P + + NK + + V AG + C
Sbjct: 295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS---------KREKAVWVLNPEAGMWQC 345
Query: 78 V 78
+
Sbjct: 346 L 346
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 49.3 bits (117), Expect = 2e-07
Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 21/192 (10%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPV--YKVEWRHNNKTLHHNIAQ-GIIMTNQSLVLQRVNRQ 70
P ++ D+ C + + PV +V ++ L+ + + ++ V +
Sbjct: 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 71
Query: 71 SAGNYTCVGFNIEGDGESNAFF-LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPD 129
TC E+ + +P + V +V + CE
Sbjct: 72 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS---EGTEVTVKCEAHPRA-- 126
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVF 189
T N +A +L T E + + C + ++ Q +
Sbjct: 127 ---KVTLNGVPAQPLGPRAQLLLKAT---------PEDNGRSFSCSATLEVAGQLIHKNQ 174
Query: 190 HIVSAVTFHPPF 201
V + P
Sbjct: 175 TRELRVLYGPRL 186
Score = 46.6 bits (110), Expect = 1e-06
Identities = 22/180 (12%), Positives = 44/180 (24%), Gaps = 30/180 (16%)
Query: 11 SLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQ 70
L + E ++V C+ V + L+L+
Sbjct: 104 ILTKPEVSEGTEVTVKCEAHPRAKVTL-NGVPA----------QPLGPRAQLLLKATPED 152
Query: 71 SAGNYTCVGFNI---EGDGESNAFFLNVMYSPTCKPHQQ-RVLGVARQEKVNISCEVDAN 126
+ +++C + ++ L V+Y P + C+ N
Sbjct: 153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 212
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVP 186
P + + + L G V GT +C + G
Sbjct: 213 PL-PELKCLKDGT---------FPLPIGESVTVTRD-----LEGTYLCRARSTQGEVTRE 257
Score = 41.6 bits (97), Expect = 7e-05
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
E+S C P +++ + V R G Y
Sbjct: 197 WPENSQQTPMCQAWGNPLP-ELKCLKDGTFP-----------LPIGESVTVTRDLEGTYL 244
Query: 77 CVGFNIEGDGESNAFFLNVMY 97
C + +G+ +NV+
Sbjct: 245 CRARSTQGEVTREV-TVNVLS 264
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 46.7 bits (111), Expect = 2e-07
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSA 72
+ + V F C P + W N K G + SL+++ V
Sbjct: 19 AVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 77
Query: 73 GNYTCVGFNIEGDGESNAFFLNVM 96
GNYTCV N G L+V+
Sbjct: 78 GNYTCVVENEYGSINHTY-HLDVV 100
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 46.9 bits (112), Expect = 2e-07
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQ 65
+ I E D + +P P V W N +T+ + +I++ + SL+ +
Sbjct: 10 QVPENMSIDEGRFCRMDFKVSGLPAP--DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFE 67
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
V AG Y CV N G+ L+V
Sbjct: 68 VVRASDAGAYACVAKNRAGEATFTV-QLDV 96
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 46.5 bits (111), Expect = 2e-07
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 12 LNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ---SLVLQRV 67
+ + + SD +F +V P P + EW N + + LV++ V
Sbjct: 12 IQSQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDV 69
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ + + NI G+ S+A FL V
Sbjct: 70 TGEDSASIMVKAINIAGETSSHA-FLLV 96
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 48.8 bits (116), Expect = 2e-07
Identities = 28/210 (13%), Positives = 57/210 (27%), Gaps = 32/210 (15%)
Query: 21 SDVYFDCDIVAVPPV----YKVEWRHNNKTLHHNIAQGIIMTNQ---------------- 60
S++ +C + V W +K + + + Q
Sbjct: 17 SNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLS 76
Query: 61 ----SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK 116
+L + V Q AG Y C+ + G + + V + V+ E
Sbjct: 77 LGNAALQITDVKLQDAGVYRCM-IS-YGGADYKRITVKVNAPYNKINQRILVVDPVTSE- 133
Query: 117 VNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRS--GTLSVVAYSPNSELDYGTLI 173
++C+ + P +V WT ++ + +V + +
Sbjct: 134 HELTCQAEGYPKAEV--IWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFY 191
Query: 174 CWGSNKIGHQRVPCVFHIVSAVTFHPPFNQ 203
C + I HPP +
Sbjct: 192 CTFRRLDPEENHTAELVIPELPLAHPPNER 221
Score = 30.4 bits (68), Expect = 0.30
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHN--------NKTLHHNIAQGIIMTNQSLVLQRVNR 69
S+ C P +V W + T + + + +L R+N
Sbjct: 129 PVTSEHELTCQAEGYPKA-EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL---RINT 184
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQR 107
+ + C ++ E++ L + P P +R
Sbjct: 185 TTNEIFYCTFRRLDP-EENHTAELVIPELPLAHPPNER 221
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 46.6 bits (111), Expect = 2e-07
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMT---NQSLVLQRVNRQSA 72
++E DC + +P P + W+ + K + + A +++ SL+++ V + A
Sbjct: 21 VQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G YTC+ N G + L V +
Sbjct: 79 GIYTCIATNRAGQNSFSL-ELVVAAKES 105
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 46.7 bits (111), Expect = 3e-07
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG----IIMTNQSLVLQRV----- 67
+ + +C P +EW + + + +++ + SL R+
Sbjct: 21 VSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ 105
+R G Y CV N G+ S+ L V + H
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHHH 117
Score = 32.1 bits (73), Expect = 0.037
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 111 VARQEKVNISCEVDANPPDVKFSWTFNN----SAETVNVAQAHILRSGTLSV--VAYSPN 164
V++ E ++C+ + P W + + + +L SG+L + +
Sbjct: 21 VSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79
Query: 165 SELDYGTLICWGSNKIG 181
S D G +C N +G
Sbjct: 80 SRPDEGVYVCVARNYLG 96
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 48.7 bits (115), Expect = 3e-07
Identities = 16/176 (9%), Positives = 49/176 (27%), Gaps = 31/176 (17%)
Query: 17 IKEDSDVYFDCDIVAVPPV---YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
+ P+ W +++ +N +L + ++AG
Sbjct: 14 FLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------TATLTVADATSENAG 65
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQ-RVLGVARQEKVNISCEVD-------A 125
+Y + + + + + + + V+ Q V + V A
Sbjct: 66 SYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPA 125
Query: 126 NPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
+ ++ +SW+ I + +++ ++ + G +
Sbjct: 126 DNYELHYSWSKGEDV---------IDTTQDITIQEFTAD---KNGVYTVKVWGESE 169
Score = 45.6 bits (107), Expect = 3e-06
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 38/184 (20%)
Query: 17 IKEDSDVYFDCDIVA-------VPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+ +DV + W +I T Q + +Q
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGED---------VIDTTQDITIQEFTA 154
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN--- 126
G YT + D ++A ++ + VA +++++ V +
Sbjct: 155 DKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVG 214
Query: 127 ------PPDVKFSW----------TFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYG 170
+K++W T S + I G L + + + D
Sbjct: 215 DSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD---DTA 271
Query: 171 TLIC 174
C
Sbjct: 272 KFWC 275
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 48.8 bits (115), Expect = 4e-07
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 6/130 (4%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN----IAQGIIMTNQSLVLQRVNRQSAG 73
+ + F C + V + + + S+V+ + ++ AG
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAG 303
Query: 74 NYTCVGFNIEGDGESNAFFLNVM--YSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVK 131
Y C + E + + + P V+ V + C +
Sbjct: 304 RYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSI 363
Query: 132 FSWTFNNSAE 141
W A+
Sbjct: 364 KYWCLWEGAQ 373
Score = 35.7 bits (81), Expect = 0.007
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Query: 27 CDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDG 86
C + Y L + G + + ++++ +G Y C G
Sbjct: 46 CITLISSEGYVSSKYAGRANLTNFPENGTF----VVNIAQLSQDDSGRYKCGLGI-NSRG 100
Query: 87 ESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
S L V P + V V I+C + S
Sbjct: 101 LSFDVSLEVSQGPGLLNDTKVYT-VDLGRTVTINCPFKTENAQKRKSL 147
Score = 35.7 bits (81), Expect = 0.007
Identities = 26/155 (16%), Positives = 41/155 (26%), Gaps = 10/155 (6%)
Query: 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQR-------VLGVAR 113
S+V+ ++ AG Y C + + NA + P R LG
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245
Query: 114 QEKVNISCEVDANPPDVKFSWTFNNSAETVN--VAQAHILRSGTLSVVAYSPNSELDYGT 171
C + T A + + G+ SVV E D G
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE-DAGR 304
Query: 172 LICWGSNKIGHQRVPCVFHIVSAVTFHPPFNQKLT 206
+C + Q + V + T
Sbjct: 305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPT 339
Score = 33.8 bits (76), Expect = 0.037
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 33 PPVYKVEWRHNNKTL----HHNIAQGIIMTNQ-----SLVLQRVNRQSAGNYTCVGFNIE 83
Y +W + ++ + ++ SL L V R G Y C
Sbjct: 473 YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532
Query: 84 GDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFN 137
GE+ A ++ V +A+ + +D+ +++ +
Sbjct: 533 FYGETAAVYVAVEERKAAGSRDVS---LAKADAAPDEKVLDSGFREIENKAIQD 583
Score = 32.3 bits (72), Expect = 0.095
Identities = 13/117 (11%), Positives = 30/117 (25%), Gaps = 7/117 (5%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
+ C ++ + +L G +++L ++ + AG Y C
Sbjct: 368 LWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTF----TVILNQLTSRDAGFYWC 423
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSW 134
+ GD + + E + + C + W
Sbjct: 424 L---TNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYW 477
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 47.3 bits (112), Expect = 5e-07
Identities = 21/183 (11%), Positives = 44/183 (24%), Gaps = 42/183 (22%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT------------------- 58
K+ V C + W+++N+ +
Sbjct: 8 KKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVN 118
N L+++ + + + Y C + E + + + + + +
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVED--QKEEVQLLVFGLTANSDTH--------LLQGQSLT 116
Query: 119 ISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSN 178
++ E +I TLSV S D GT C
Sbjct: 117 LTLESPPGSS-PSVQCRSPR--------GKNIQGGKTLSV---SQLELQDSGTWTCTVLQ 164
Query: 179 KIG 181
Sbjct: 165 NQK 167
Score = 41.9 bits (98), Expect = 4e-05
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
H+ + + + V+ R I ++L + ++ Q +G +
Sbjct: 108 HLLQGQSLTLTLESPPGSSP-SVQCRSPR--------GKNIQGGKTLSVSQLELQDSGTW 158
Query: 76 TCVGFNIEGDGESNA 90
TC + E
Sbjct: 159 TCTVLQNQKKVEFKI 173
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 47.8 bits (114), Expect = 7e-07
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG---IIMTNQSLVLQRVNRQSA 72
+I E C PP+ V+W N T+ + ++ ++ + +L V
Sbjct: 363 NISEGRMAELKCR---TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDT 419
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQ 106
G YTC+ N+ G+ ++A +LNV + T H
Sbjct: 420 GVYTCMVTNVAGNSNASA-YLNVSTAGTHHHHHH 452
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 45.2 bits (107), Expect = 8e-07
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 25 FDCDIVAVPPVYKVEWRHNNKTL------HHNIAQGIIMTNQSLVLQRVNRQSAGNYTCV 78
+ + PP + W HN + L H Q ++ L+ + + GNYT +
Sbjct: 25 IEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI 83
Query: 79 GFNIEGDGESNAFFLNVMYSP 99
N G + + P
Sbjct: 84 AKNPLGTANQTI-NGHFLKEP 103
Score = 26.3 bits (58), Expect = 4.6
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 93 LNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFN------NSAETVNV 145
L V Y P ++ R E I V NP P + W N + V
Sbjct: 3 LTVYYPPRVVSLEE---PELRLEHC-IEFVVRGNPPPTL--HWLHNGQPLRESKIIHVEY 56
Query: 146 AQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
Q + G L + + G N +G
Sbjct: 57 YQEGEISEGCLLFNKPTHY---NNGNYTLIAKNPLG 89
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 44.8 bits (106), Expect = 9e-07
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYT 76
+ + C + + W + L + +T + + ++ +G Y
Sbjct: 21 VHPGDLLQLRCRLRDDVQ--SINWLRDGVQLVES--NRTRITGEEVEVRDSIPADSGLYA 76
Query: 77 CVGFNIEGDGESNAFFLNV 95
CV + G ++ F +NV
Sbjct: 77 CVTSSPSGS-DTTYFSVNV 94
Score = 28.6 bits (64), Expect = 0.46
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 98 SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLS 157
P P + L V + + + C + + + +W + + + + +
Sbjct: 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDVQSI--NWLRDG--VQLVESNRTRITGEEVE 63
Query: 158 VVAYSPNSELDYGTLICWGSNKIG 181
V P D G C S+ G
Sbjct: 64 VRDSIPA---DSGLYACVTSSPSG 84
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 46.4 bits (110), Expect = 1e-06
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQS 71
+ E + V C++ A P + W + + L + NI + L + +
Sbjct: 29 YTWEGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEND 87
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSP 99
GNY C N G L +P
Sbjct: 88 FGNYNCTAVNRIGQESLEF-ILVQADTP 114
Score = 39.8 bits (93), Expect = 2e-04
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132
Y + + MY+P + +VNI+CEV A P
Sbjct: 1 ATYAAASSALVPR-------GSHMYAPKLQGPVAVY--TWEGNQVNITCEVFAYPS-ATI 50
Query: 133 SWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
SW + + N + I + + S + +P+SE D+G C N+IG
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIG 100
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 44.3 bits (105), Expect = 2e-06
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 15 DHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHN-------IAQGIIMTNQSLVLQR 66
+ D + P P ++W +N L+ + + L L
Sbjct: 11 ESPTSDHHWCIPFTVKGNPKP--ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
+ G+YT + N G E + M P
Sbjct: 69 PTHMNNGDYTLIAKNEYGKDEKQI-SAHFMGWP 100
Score = 26.2 bits (58), Expect = 3.8
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 106 QRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSA-------ETVNVAQAHILRSGTLS 157
+ I V NP P ++ W +N + T H G L
Sbjct: 8 TFLESPTSDHHWCIPFTVKGNPKPALQ--WFYNGAILNESKYICTKIHVTNHTEYHGCLQ 65
Query: 158 VVAYSPNSELDYGTLICWGSNKIG 181
+ +P + G N+ G
Sbjct: 66 L--DNPTHM-NNGDYTLIAKNEYG 86
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 44.5 bits (105), Expect = 2e-06
Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 10/103 (9%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--------S 61
S H C I + PP ++ W L + + +
Sbjct: 18 SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77
Query: 62 LVLQRVNRQ-SAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKP 103
L + + R Y C +N G L S P
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFGSDTEI-IRLKEQGSEMSGP 119
Score = 39.1 bits (91), Expect = 2e-04
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 84 GDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETV 143
G S+ L V P Q + EK I C + + PP + +W++ +
Sbjct: 1 GSSGSSGT-LTVNGPPIISSTQTQH--ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57
Query: 144 N-----VAQAHILRSGTLSVVAYSPNSELDYGTL-ICWGSNKIG 181
+ G +S + S D+ T+ C N G
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG 101
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 43.9 bits (104), Expect = 2e-06
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQR 66
R P + ++ C ++ P P V W + L + L+L
Sbjct: 18 RFPRPVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLAASERLSFPADGAEHGLLLTA 75
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
AG Y C N G+ + A + V+ P
Sbjct: 76 ALPTDAGVYVCRARNAAGEAYAAA-AVTVLEPP 107
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
++ V + P+ W K + H + L + ++
Sbjct: 19 VRAGESVELFGKVTGTQPI-TCTWMKFRKQIQESEHMKVENSE--NGSKLTILAARQEHC 75
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSP 99
G YT + N G ++ L V+ P
Sbjct: 76 GCYTLLVENKLGSRQAQV-NLTVVDKP 101
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 43.5 bits (103), Expect = 2e-06
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQRV 67
+ IK + D + P W + + + S+
Sbjct: 7 TASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPELLVDAKSSTTSIFFPSA 65
Query: 68 NRQSAGNYTCVGFNIEGDGESNAFFLNV 95
R +GNY N G+ E+ + V
Sbjct: 66 KRADSGNYKLKVKNELGEDEAIF-EVIV 92
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 45.5 bits (107), Expect = 3e-06
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
Query: 53 QGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVA 112
G + + SL + + + G+YTC+ S +L V+ P Q+V
Sbjct: 71 LGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTG 130
Query: 113 RQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAY---SPNSELDY 169
+ C P + +W ++ +Q SGT++V + P+S++D
Sbjct: 131 -EPVPMARCVSTGGRPPAQITW-HSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDG 188
Query: 170 GTLICWGSN 178
+ C +
Sbjct: 189 KQVTCKVEH 197
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 43.9 bits (104), Expect = 3e-06
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM---TNQSLVLQR 66
L ++E S F C I V W + LH N I L L++
Sbjct: 18 EDLEDVDVQEGSSATFRCRISP-ANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQ 76
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100
+ + +G GD ++A L V P+
Sbjct: 77 LALKDSGTIYFEA----GDQRASA-ALRVTEKPS 105
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 43.1 bits (102), Expect = 3e-06
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ ++ C+I P +W N + + + + + LV+ +
Sbjct: 19 VNLGKEICLKCEISENIPG---KWTKNGLPVQES--DRLKVVQKGRIHKLVIANALTEDE 73
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G+Y + A ++V+ P+
Sbjct: 74 GDYVFA--PDAYNVTLPA-KVHVISGPS 98
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 43.1 bits (102), Expect = 3e-06
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 17 IKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQS 71
I E + C P P +V W + +H + N +L++ V +Q
Sbjct: 17 IDEGKVLTVACAFTGEPTP--EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQD 74
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
G YT N G + +++
Sbjct: 75 GGLYTLSLGNEFGSDSATV-NIHI 97
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 44.9 bits (105), Expect = 4e-06
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVNRQS-AGNYT 76
+ V C P ++ W+HN+K + + I +++ L L+ + +G Y
Sbjct: 127 SGTTVILTC---PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYV 183
Query: 77 CVGFNIEGDGESNAFFLNVM 96
C + + + +L
Sbjct: 184 CYPRGSKPEDANFYLYLRAR 203
Score = 39.1 bits (90), Expect = 4e-04
Identities = 23/193 (11%), Positives = 41/193 (21%), Gaps = 40/193 (20%)
Query: 15 DHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGN 74
+ED V CD + W + K + + L + G
Sbjct: 13 YDYQEDGSVLLTCDA----EAKNITWFKDGKMIGFLTE-----DKKKWNLGSNAKDPRGM 63
Query: 75 YTCVGFNIEGDGESNAFFLNV-------------------------MYSPTCKPHQQRVL 109
Y C G + + + Q
Sbjct: 64 YQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123
Query: 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSA-ETVNVAQAHILRSGTLSVVAYSPNSELD 168
V ++C P + W N+ + LS+ +S
Sbjct: 124 VSISGTTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE--Q 178
Query: 169 YGTLICWGSNKIG 181
G +C+
Sbjct: 179 SGYYVCYPRGSKP 191
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 43.0 bits (102), Expect = 4e-06
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQ--SLVLQR 66
L + DS F P P W + K + + L + +
Sbjct: 11 TGLQDTTVSSDSVAKFAVKATGEPRP--TAIWTKDGKAITQGGKYKLSEDKGGFFLEIHK 68
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ +G YTC N G S+ L +
Sbjct: 69 TDTSDSGLYTCTVKNSAGSVSSSC-KLTI 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 45.2 bits (107), Expect = 5e-06
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG-IIMTNQSLVLQRVNRQSAGN 74
+ CD KV +N+ + + G + + N L ++V + G
Sbjct: 257 EAHLGDTLTIRCDTKQQGMT-KVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGV 315
Query: 75 YTCVGFNIEGDGESNAFFLNVMYSPTCKPHQ 105
YTC + + L V H
Sbjct: 316 YTCYAMGETFNETLS-VELKVYNFTLHGHHD 345
Score = 37.1 bits (86), Expect = 0.003
Identities = 11/104 (10%), Positives = 30/104 (28%), Gaps = 9/104 (8%)
Query: 100 TCKPHQQRVLGVARQEKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHI-LRSGTLS 157
C +++ + + I C+ V + +N + + +R+G L
Sbjct: 247 NCSEYKESAWEAHLGDTLTIRCDTKQQGMTKV--WVSPSNEQVLSQGSNGSVSVRNGDLF 304
Query: 158 VVAYSPN-SELDYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
D G C+ + ++ + + +
Sbjct: 305 F----KKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHH 344
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 42.8 bits (101), Expect = 5e-06
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSA 72
+K F C V+ V +W N + + + I +++ LV+ V +
Sbjct: 20 VKAAEQAVFKC-EVSDEKV-TGKWYKNGVEVRPS--KRITISHVGRFHKLVIDDVRPEDE 75
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKP 103
G+YT V +A LN + P
Sbjct: 76 GDYTFVPDG--YALSLSA-KLNFLEIKVSGP 103
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 42.8 bits (100), Expect = 6e-06
Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 21 SDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQ----------GIIMTNQSLVLQRVNR 69
SDV F C + W +N+ L + ++ L L+ V
Sbjct: 26 SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEF 85
Query: 70 QSAGNYTCVGFNIEGDGESNAFFLNV 95
S G Y CV N G S L +
Sbjct: 86 TSEGXYQCVISNHFGSSYSVXAXLTI 111
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 42.4 bits (100), Expect = 7e-06
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
+ E F+C + W KT+ + T Q LV++ A
Sbjct: 20 VLEGESCSFECVLSHESASDPAMWTVGGKTVGSS--SRFQATRQGRKYILVVREAAPSDA 77
Query: 73 GNYTCV 78
G
Sbjct: 78 GEVVFS 83
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 41.9 bits (99), Expect = 1e-05
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSA 72
+ E C + +V V+W + N L + LV++ + Q +
Sbjct: 20 VLEGGAATLRCVLSSVAA--PVKWCYGNNVLRPG--DKYSLRQEGAMLELVVRNLRPQDS 75
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G Y+C GD ++A L V P+
Sbjct: 76 GRYSCSF----GDQTTSA-TLTVTALPS 98
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 42.0 bits (99), Expect = 1e-05
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT----NQSLVLQRVNRQSA 72
E + C++ + PV EW ++TL + L ++ + + A
Sbjct: 31 ATEGATAVLRCELSKMAPV---EWWKGHETLRDG--DRHSLRQDGARCELQIRGLVAEDA 85
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G Y C+ G ++A L V P+
Sbjct: 86 GEYLCMC----GKERTSA-MLTVRAMPS 108
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 42.0 bits (99), Expect = 1e-05
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQ 65
+ L E + C++ V PV EW+ +TL +++ Q T L +
Sbjct: 13 QDLKTKEASEGATATLQCELSKVAPV---EWKKGPETLRDGGRYSLKQ--DGTRCELQIH 67
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100
++ AG Y+C+ G ++A L V P
Sbjct: 68 DLSVADAGEYSCMC----GQERTSA-TLTVRALPA 97
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 43.2 bits (101), Expect = 1e-05
Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 7/153 (4%)
Query: 49 HNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRV 108
+ GI +L + V +G Y C + + ++ +
Sbjct: 72 SILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVK-- 129
Query: 109 LGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHIL-RSGTLSVVAYSPNSEL 167
+ +++ C P + W+ N V + G +V A
Sbjct: 130 --GYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS 187
Query: 168 DYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPP 200
+ C + + I A F
Sbjct: 188 SGEGVSCTIRSSLLGLEKTASISI--ADPFFRS 218
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 41.2 bits (97), Expect = 2e-05
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIM----TNQSLVLQ 65
+ L V +C++ V+W N + + + L+++
Sbjct: 12 KQLEDTTAYCGERVELECEVSEDDA--NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ A Y+ + G+S+A L+V
Sbjct: 70 GATKADAAEYSVMT----TGGQSSA-KLSV 94
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 43.6 bits (103), Expect = 2e-05
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQG--IIMTNQSLVLQRVNRQSAG 73
+ E V F C PP + W K L + G + + +L ++ Q G
Sbjct: 396 FVDEGHTVQFVCRADGDPPP-AILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNG 454
Query: 74 NYTCVGFNIEGDGESNAFFLNV 95
Y C+ N G +S L+V
Sbjct: 455 TYLCIAANAGG-NDSMPAHLHV 475
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 42.9 bits (101), Expect = 3e-05
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQGIIMTNQSLVLQRVNRQSA 72
+ E F C ++A P V W +++ L + + L + RV
Sbjct: 494 VGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYN--GNDYGLTINRVKGDDK 550
Query: 73 GNYTCVGFNIEGDGESNAFFLNV 95
G YT N G E FLNV
Sbjct: 551 GEYTVRAKNSYGTKEEIV-FLNV 572
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 41.1 bits (96), Expect = 3e-05
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 14/103 (13%)
Query: 17 IKEDSDVYFDCDIVAVPPVYK--VEWRHNNK-----------TLHHNIAQGIIMTNQSLV 63
+K D+ F + A + K ++W L + + +
Sbjct: 19 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQ 106
+ + AGNY C + + L V S P+
Sbjct: 79 IIKAKDNFAGNYRCEVTYKDKFDSCSF-DLEVHESTGTTPNID 120
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 42.4 bits (100), Expect = 5e-05
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI---IMTNQSLVLQRVNRQSA 72
++ E C V W N T+ + A + ++++ +L V Q
Sbjct: 352 NVTEGMAAELKCRASTSLT--SVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDT 409
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH 104
G YTC+ N G+ ++A LNV + H
Sbjct: 410 GMYTCMVSNSVGNTTASA-TLNVTGTHHHHHH 440
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 41.7 bits (97), Expect = 5e-05
Identities = 31/191 (16%), Positives = 50/191 (26%), Gaps = 37/191 (19%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNK-----TLHHNIAQGI-----------------IMT 58
V DC Y +EW ++ L QG + +
Sbjct: 16 KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS 75
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT---CKPHQQRVLGVARQE 115
LVL +Y CV LNV P P++ + +
Sbjct: 76 QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA 135
Query: 116 KVNISCEVDANPPDVKFSWTFNNSA---------ETVNVAQAHILRSGTLSVVAY---SP 163
+ +C P K +W N E ++ SG LS+ +
Sbjct: 136 QEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL 195
Query: 164 NSELDYGTLIC 174
+ + C
Sbjct: 196 RKDDRDASFHC 206
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.4 bits (98), Expect = 5e-05
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
K C + +V W+ N L + +M ++L++ ++ +G
Sbjct: 542 QHFFKHGGTAELKCS--QKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 599
Query: 74 NYTCV 78
Y C+
Sbjct: 600 VYQCL 604
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 39.6 bits (93), Expect = 5e-05
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-----IAQGIIMTNQSLVLQRVNRQS 71
+ S F+ V KV W+ + + +G T +L ++ V
Sbjct: 20 VAAGSPAVFEA-ETERAGV-KVRWQRGGSDISASNKYGLATEG---TRHTLTVREVGPAD 74
Query: 72 AGNYTCV 78
G+Y +
Sbjct: 75 QGSYAVI 81
Score = 25.0 bits (55), Expect = 7.7
Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 2/28 (7%)
Query: 111 VARQEKVNISCEVDANPPDVKFSWTFNN 138
VA E + V+ W
Sbjct: 20 VAAGSPAVFEAETERAGVKVR--WQRGG 45
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 39.6 bits (93), Expect = 6e-05
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN----QSLVLQRVNRQSA 72
+ DV C++ V W + K + + Q + LV++ + + A
Sbjct: 20 VAPGEDVELRCELSRAGT--PVHWLKDRKAIRKS--QKYDVVCEGTMAMLVIRGASLKDA 75
Query: 73 GNYTCVGFNIEG 84
G YTC +
Sbjct: 76 GEYTCEVEASKS 87
Score = 25.7 bits (57), Expect = 6.1
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 111 VARQEKVNISCEVDANPPDVKFSWTFNN 138
VA E V + CE+ V W +
Sbjct: 20 VAPGEDVELRCELSRAGTPVH--WLKDR 45
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 41.6 bits (96), Expect = 8e-05
Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 17/173 (9%)
Query: 18 KEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
V CD + W + + ++ + ++L +Q AG YTC
Sbjct: 19 APGEMVVLTCDTPEEDGIT---WTLDQSSE-------VLGSGKTLTIQVKEFGDAGQYTC 68
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFN 137
+ G+ S++ L + K + CE W
Sbjct: 69 ---HKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTT 125
Query: 138 NSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQRVPCVFH 190
S + ++ S V G NK V C
Sbjct: 126 ISTDLTFSVKSSRGSSDPQGV----TCGAATLSAERVRGDNKEYEYSVECQED 174
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 39.6 bits (92), Expect = 9e-05
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 14/92 (15%)
Query: 17 IKEDSDVYFDCDIVAVPPVYK--VEWRHNNK-----------TLHHNIAQGIIMTNQSLV 63
+ + F + + V+W LH + + + L
Sbjct: 16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELH 75
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ G+Y C + SN F L V
Sbjct: 76 ITDAQPAFTGSYRCEVSTKDKFDCSN-FNLTV 106
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 39.3 bits (92), Expect = 1e-04
Identities = 9/86 (10%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL---HHNIAQGIIMTNQSLVLQRVNRQSAG 73
K + P +V W L ++ + +++ R +G
Sbjct: 36 RKVGEQLNLVVPFQGKPRP-QVVWTKGGAPLDTSRVHVRTSD--FDTVFFVRQAARSDSG 92
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSP 99
Y ++ + V+
Sbjct: 93 EYELSVQIENMK-DTATIRIRVVEKA 117
Score = 25.8 bits (57), Expect = 6.2
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 115 EKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSV 158
E++N+ P P V WT ++ ++ H+ S +V
Sbjct: 40 EQLNLVVPFQGKPRPQV--VWTKGG--APLDTSRVHVRTSDFDTV 80
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 38.9 bits (91), Expect = 1e-04
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQ-GIIMTNQSLVLQRVNRQS 71
++E F C V WR L H +Q G L + + +
Sbjct: 20 VEEKGTAVFTCKTEHPAA--TVTWRKGLLELRASGKHQPSQEG---LTLRLTISALEKAD 74
Query: 72 AGNYTCVGFNIEGDGESNAFFLNV 95
+ YTC G +S A L V
Sbjct: 75 SDTYTCDI----GQAQSRA-QLLV 93
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 38.5 bits (90), Expect = 2e-04
Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 13/98 (13%)
Query: 2 PETRLTLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMT--- 58
+ + V C++ V W + + + + + +++
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDF--PATWYKDGQKVEES--ELLVVKMDG 62
Query: 59 -NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
L+L Q +G + C + + V
Sbjct: 63 RKHRLILPEAKVQDSGEFECRT----EGVSAFF-GVTV 95
Score = 26.6 bits (59), Expect = 3.1
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 102 KPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNN 138
P + L E+V ++CE+ W +
Sbjct: 13 SPQDKVSLTFTTSERVVLTCELSRVDFPAT--WYKDG 47
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 38.0 bits (89), Expect = 2e-04
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-----IAQGIIMTNQSLVLQRVNRQS 71
+ +F+ + ++ P V +W+ + L + I G L+L
Sbjct: 17 VFVGETAHFEIE-LSEPDV-HGQWKLKGQPLAASPDCEIIEDG---KKHILILHNCQLGM 71
Query: 72 AGNYTCV 78
G +
Sbjct: 72 TGEVSFQ 78
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 38.6 bits (89), Expect = 2e-04
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 16 HIKEDSDVYFDCDIVAVP-PVYKVEWRHNNKTLHHNIAQGIIMTNQS----------LVL 64
+ + +C W + + H + QS L +
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78
Query: 65 QRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
V R G YTC + + N+ F+ V P
Sbjct: 79 DGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKP 112
Score = 32.8 bits (74), Expect = 0.028
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 115 EKVNISCEVDANP-PDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL------ 167
EK+ ++C + F+W + +S L++ + S + S L
Sbjct: 24 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM-KKFLSTLTIDGVT 82
Query: 168 --DYGTLICWGSNKIGHQRVPCVFHIVSAVTFHPPF 201
D G C S+ + ++ + PF
Sbjct: 83 RSDQGLYTCAASSGLMTKKNSTFVRVHE-----KPF 113
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 37.7 bits (88), Expect = 3e-04
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTN---QSLVLQRVNRQSAG 73
+ + + + +A +V+W N + + + ++ I + ++L + + +
Sbjct: 28 VSKGHKIRLTVE-LADHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDA 85
Query: 74 NYTCV 78
Y CV
Sbjct: 86 AYQCV 90
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 37.7 bits (88), Expect = 3e-04
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 13/92 (14%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN--IAQGIIM----TNQSLV 63
L + V + V+ +V W N L L+
Sbjct: 13 TPLEDQQVFVGDRVEMAVE-VSEEGA-QVMWMKNGVELTREDSFKARYRFKKDGKRHILI 70
Query: 64 LQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
V ++ G Y + G+ A L V
Sbjct: 71 FSDVVQEDRGRYQVIT----NGGQCEA-ELIV 97
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 37.4 bits (87), Expect = 4e-04
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHN-----IAQGIIMTNQSLVLQRVNRQS 71
+ + V F + +A P + +V+W N + + + +G + L +
Sbjct: 20 VDKGGRVRFVVE-LADPKL-EVKWYKNGQEIRPSTKYIFEHKG---CQRILFINNCQMTD 74
Query: 72 AGNYTCV 78
Y
Sbjct: 75 DSEYYVT 81
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 37.0 bits (86), Expect = 6e-04
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQS 71
+ + C VA +V W + K L + + + LV+Q+ +
Sbjct: 22 QAEAGASATLSC-EVAQAQT-EVTWYKDGKKLSSS--SKVRVEAVGCTRRLVVQQAGQAE 77
Query: 72 AGNYTCV 78
AG Y+C
Sbjct: 78 AGEYSCE 84
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 38.0 bits (87), Expect = 9e-04
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 9/117 (7%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTCVGF 80
+ C + V+WR + +L + L ++ + +AG CVG
Sbjct: 23 ASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT---GRSVLTVRNASLSAAGTRVCVGS 79
Query: 81 NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPP--DVKFSWT 135
G + L V P L ++C P S++
Sbjct: 80 C-GGRTFQHTVQLLVYAFPNQLTVSPAAL---VPGDPEVACTAHKVTPVDPNALSFS 132
Score = 27.2 bits (59), Expect = 3.3
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 105 QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPN 164
+ V+ VA ++C + W +++ + SV+
Sbjct: 13 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA------VQSDTGRSVLTVRNA 66
Query: 165 SELDYGTLICWGSN 178
S GT +C GS
Sbjct: 67 SLSAAGTRVCVGSC 80
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 38.5 bits (88), Expect = 0.001
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ +S Y C WRH G N L ++ + Q G+Y
Sbjct: 511 SLAPNSRYYLSC--PMESRHATYSWRHKENVEQSC-EPGHQSPNCILFIENLTAQQYGHY 567
Query: 76 TCV 78
C
Sbjct: 568 FCE 570
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 36.9 bits (85), Expect = 0.001
Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 16/89 (17%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI---------------IMTNQS 61
V C+ V P +++W + + +Q +
Sbjct: 33 RWVGGSVELHCEAVGSPVP-EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAST 91
Query: 62 LVLQRVNRQSAGNYTCVGFNIEGDGESNA 90
+ + + + G Y C N
Sbjct: 92 ISIDTLVEEDTGTYECRASNDPDRNHLTR 120
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 36.8 bits (85), Expect = 0.001
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH---------HNIAQGIIMTNQ 60
S+ E + P + W N L+ A + +
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSP 99
L L + + GNYT + N G ++ M +P
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASI-MAAFMDNP 101
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 36.3 bits (84), Expect = 0.001
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ----SLVLQRVNRQSA 72
V C + P +V W + + + + +++ + LVL V + +
Sbjct: 25 AVRLERVVLTC-ELCRPWA-EVRWTKDGEEVVES--PALLLQKEDTVRRLVLPAVQLEDS 80
Query: 73 GNYTCV 78
G Y C
Sbjct: 81 GEYLCE 86
Score = 25.9 bits (57), Expect = 5.3
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 102 KPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNN 138
P + + R E+V ++CE+ +V+ WT +
Sbjct: 16 YPSGKVYVAAVRLERVVLTCELCRPWAEVR--WTKDG 50
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 37.5 bits (86), Expect = 0.002
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 31/144 (21%)
Query: 21 SDVYFDCDIV--AVPPVYKVEWRHNNKTLHH----------------------NIAQGII 56
V C + V +V+W + ++
Sbjct: 21 ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTF 80
Query: 57 MTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEK 116
+ SL+LQ V + G YTC + + P + +G +
Sbjct: 81 HNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKK-PVELWVLPEEPRDLRVRVG----DT 135
Query: 117 VNISCEVDANPP--DVKFSWTFNN 138
+ C + + K +W F++
Sbjct: 136 TQMRCSIQSTEEKRVTKVNWMFSS 159
Score = 33.3 bits (75), Expect = 0.042
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 55 IIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100
I + S+ LQ V G YTC + + + L+V+
Sbjct: 196 ISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTI-VLHVVQDEF 240
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 37.2 bits (86), Expect = 0.002
Identities = 28/177 (15%), Positives = 49/177 (27%), Gaps = 10/177 (5%)
Query: 11 SLNPDH-IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLH-HNIAQGIIMTNQSLVLQRVN 68
S I D V C + + ++ N+ + T+ V+ ++
Sbjct: 13 SAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMD 72
Query: 69 RQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH--QQRVLGVARQEKVNISCEVDAN 126
AG Y C + V+ KP R L + E ++++C
Sbjct: 73 ANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHI 132
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGHQ 183
P D +FS + +L V G C+G
Sbjct: 133 PFD-RFSLAKEGELSLPQHQSGEHPANFSLGPV-----DLNVSGIYRCYGWYNRSPY 183
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 35.9 bits (82), Expect = 0.002
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQS-LVLQRVNR-QSAGNYTCV 78
+ V C P ++ W+HN+K + + I +++ L L+ + + +G Y C
Sbjct: 22 TTVILTCP---QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 79 GFNIEGDGESNAFFLNVMYSPTC 101
+ + + +L C
Sbjct: 79 PRGSKPEDANFYLYLRARVCENC 101
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 37.2 bits (85), Expect = 0.002
Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 25/104 (24%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGI-------------------- 55
+ E +D+ C V W +
Sbjct: 147 QVDEGNDITMTCPCTDCANA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205
Query: 56 ---IMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVM 96
++LV++ AG C +G+ +++ ++
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR-SSTIL 248
Score = 36.8 bits (84), Expect = 0.002
Identities = 18/163 (11%), Positives = 31/163 (19%), Gaps = 41/163 (25%)
Query: 17 IKEDSDVYFDCDIVAVP--PVYKVEWRHNNKTLHHNI----------------------- 51
+ V C + W
Sbjct: 14 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKE 73
Query: 52 --------AQGIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMY------ 97
A + +L L V+ Q G Y C E +V+
Sbjct: 74 SFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT 133
Query: 98 -SPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNS 139
S V+ V + ++C +W +
Sbjct: 134 PSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN-VTWYTGPT 175
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 36.7 bits (84), Expect = 0.003
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 19/173 (10%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNK-TLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
++ Y+ + P +V+ + L ++ + N SL + + G+Y
Sbjct: 42 FRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKK----NCSLSIGDARMEDTGSY 97
Query: 76 TCV---GFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDAN---PPD 129
G +++ + N L V KP + + +SC + + P
Sbjct: 98 FFRVERGRDVKYSYQQNKLNLEVTA-LIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPP 156
Query: 130 VKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIGH 182
+ FSWT N + + S + +P E L C +
Sbjct: 157 LTFSWTGNALSPLDP-------ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ 202
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 35.3 bits (81), Expect = 0.003
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRH--NNKTLHHNIAQGIIM------------TNQSLVLQR 66
S+V + ++ W + + K + + + + +L + +
Sbjct: 20 SNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISK 79
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPH 104
V ++ Y G+ + L V P KP
Sbjct: 80 VQKEDNSTYIMRVLKKTGNEQEWKIKLQV-LDPVPKPV 116
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 34.5 bits (79), Expect = 0.006
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 21 SDVYFDCDIVAVP-PVYKVEWRHNNK---TLHHNIAQGI---------IMTNQSLVLQRV 67
+ C + + V +V W ++ + ++ I L LQ +
Sbjct: 19 GSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSL 78
Query: 68 NRQSAGNYTCVGFNIEGDG-ESNAFFLNVMYSPTCKPHQQR 107
G Y C+ ++ DG + FL V+ S + H R
Sbjct: 79 TVNDTGEYFCI-YHTYPDGTYTGRIFLEVLESSVAE-HGAR 117
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 34.8 bits (79), Expect = 0.019
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 17 IKEDSDVYFDCDIVAVPPVY-KVEWRHNNKTLHHNIAQGIIMTNQS---LVLQRVNRQSA 72
+ F C + ++ + + + + + + ++ A
Sbjct: 176 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA 235
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPT 100
G Y C+ G G SN L V P
Sbjct: 236 GKYRCMIRTEGGVGISNYAELVVKEPPV 263
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 34.1 bits (77), Expect = 0.019
Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 19/124 (15%)
Query: 17 IKEDSDVYFDC----DIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVNRQS 71
+ + C + + P ++ WR + Q + Q S++ +
Sbjct: 12 VHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHT 71
Query: 72 AGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVK 131
+C + L Y P N+SC ++ +
Sbjct: 72 QAFLSCSLNWGNSLQILDQVELRAGYPP--------------AIPHNLSCLMNLTTSSLI 117
Query: 132 FSWT 135
W
Sbjct: 118 CQWE 121
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 33.7 bits (76), Expect = 0.020
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 10 RSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
+ D + D V C + ++W + + + T + L +
Sbjct: 112 NLVQVDGSRGDGSVLLTCGLTDKT----IKWLKDGSII-----SPLNATKNTWNLGNNAK 162
Query: 70 QSAGNYTCVGFN 81
G Y C G
Sbjct: 163 DPRGTYQCQGAK 174
Score = 29.5 bits (65), Expect = 0.56
Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 43/169 (25%)
Query: 37 KVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQS-AGNYTCVGFNIEG----------- 84
++W N + L ++ LVLQ + +G Y C
Sbjct: 28 NLKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVG 80
Query: 85 ------------DGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVKF 132
D + +V G V ++C +
Sbjct: 81 SADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKT----I 136
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDYGTLICWGSNKIG 181
W + S + A + G + GT C G+ +
Sbjct: 137 KWLKDGSIISPLNATKNTWNLGNNAKD--------PRGTYQCQGAKETS 177
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 32.7 bits (74), Expect = 0.052
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVN 118
+ SL L + + AG Y C + L V+ SP + +V ++ +
Sbjct: 81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGT-VQLEVVASPASRLLLDQV--GMKENEDK 137
Query: 119 ISCEV-DANPPDVKFSWTFNNSAET 142
CE P + +W
Sbjct: 138 YMCESSGFYPEAINITWEKQTQKFP 162
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 31.5 bits (71), Expect = 0.068
Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEW-RHNNKTLHHNIAQGI----------IMTNQSLVLQ 65
++E + C + ++ ++W + T+ N + S+ +
Sbjct: 13 VEEGQTLTLKC-VTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVP 71
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPT 100
V Q G Y C+ ++ + + V+ +
Sbjct: 72 NVTLQDEGVYKCLHYS--DSVSTKEVKVIVLATMK 104
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 31.6 bits (71), Expect = 0.084
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 33/121 (27%)
Query: 7 TLGRSLNPDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ------ 60
GR + + + + D I P V W+ + A+ +
Sbjct: 20 CPGRIPDTIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQGNKAPARPAPDAPEDTGDSD 78
Query: 61 -------------------------SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
++ ++ G YT N G+ + + V
Sbjct: 79 EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKV 137
Query: 96 M 96
+
Sbjct: 138 I 138
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 31.9 bits (72), Expect = 0.10
Identities = 20/131 (15%), Positives = 31/131 (23%), Gaps = 9/131 (6%)
Query: 59 NQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQE--K 116
N S+V+ + G Y CV E D V S +
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123
Query: 117 VNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTL----SVVAYSPNSELDYGTL 172
I C P+ SW N L S + ++ + +
Sbjct: 124 RRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTN---HSF 180
Query: 173 ICWGSNKIGHQ 183
+C
Sbjct: 181 MCLIKYGHLRV 191
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 31.8 bits (72), Expect = 0.16
Identities = 18/138 (13%), Positives = 36/138 (26%), Gaps = 16/138 (11%)
Query: 14 PDHIKEDSDVYFDCDIVAV--PPVYKVEW-RHNNKTLHHNIAQ----GIIMTNQSLVLQR 66
+ + S+ C + + W + K+ + G + L
Sbjct: 256 LEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCA 315
Query: 67 VNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLG-----VARQEKVNISC 121
+TC + S + +L +A E V ++C
Sbjct: 316 EPWNHGKTFTC---TAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTC 372
Query: 122 EV-DANPPDVKFSWTFNN 138
+P DV W +
Sbjct: 373 LARGFSPKDVLVRWLQGS 390
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 31.0 bits (70), Expect = 0.22
Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 10/150 (6%)
Query: 33 PPVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVNRQSAGNYTCVGFNIEGDGESNAF 91
+ + + + N+ + +N + AG Y+C+ E E +
Sbjct: 32 YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNL 91
Query: 92 FLNVMYSPTCKPH--QQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAH 149
V+ P V EKV C + F + V + +
Sbjct: 92 LDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR--LDTATSMFLLLKEGRSSHVQ--RGY 147
Query: 150 ILRSGTLSVVAYSPNSELDYGTLICWGSNK 179
+ + GT C+GS
Sbjct: 148 GKVQAEFPLGPVTTA---HRGTYRCFGSYN 174
Score = 28.7 bits (64), Expect = 1.0
Identities = 16/127 (12%), Positives = 27/127 (21%), Gaps = 7/127 (5%)
Query: 11 SLNPD-HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
S++P + V F C + ++ + + + + L V
Sbjct: 106 SVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKV----QAEFPLGPVTT 161
Query: 70 QSAGNYTCVGF--NIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANP 127
G Y C G N S L V +
Sbjct: 162 AHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGL 221
Query: 128 PDVKFSW 134
W
Sbjct: 222 QKDHALW 228
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 31.0 bits (70), Expect = 0.25
Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 25/182 (13%)
Query: 4 TRLTLGRSLNPDHIKEDSDVYFDCDIVAV---PPVYKVEWRHNNKTLHHNIAQ------- 53
+ + D + C +V V P ++ W NN +H Q
Sbjct: 239 PSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYN 298
Query: 54 GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVL---- 109
+ +L +Q + S + C N + A + P +V
Sbjct: 299 STLRVVSALPIQHQDWMSGKEFKCKVNN----KDLPAPIERTISKPKGSVRAPQVYVLPP 354
Query: 110 --GVARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSE 166
+++V ++C V D P D+ WT N E +L S Y S+
Sbjct: 355 PEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGS----YFMYSK 410
Query: 167 LD 168
L
Sbjct: 411 LR 412
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 30.7 bits (69), Expect = 0.32
Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 10/139 (7%)
Query: 33 PPVYKVEWRHNNKTLHHNIAQ-------GIIMTNQSLVLQRVNRQSAGNYTCVGFNIEGD 85
P ++W N L + + + C ++
Sbjct: 146 PRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ 205
Query: 86 GESNAFFLNVMYSPTCKPHQQRVLGVARQE-KVNISCEV-DANPPDVKFSWTFNNSAETV 143
G+ N+ + P + R E +VN++C+V P ++ +W N +
Sbjct: 206 GDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT 265
Query: 144 NVAQAHILRS-GTLSVVAY 161
A GT + +++
Sbjct: 266 ETASTVTENKDGTYNWMSW 284
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 30.2 bits (68), Expect = 0.51
Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 24/160 (15%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII-------MTNQSLVLQRVNRQSAG 73
DV + P K W + +H+ + L + + +
Sbjct: 274 VDVSHE------DPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK 327
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQE----KVNISCEV-DANPP 128
Y C + + ++ +P Q L +R E +V+++C V P
Sbjct: 328 EYKCK-VSNKALPAPIEKTISKAKGQPREP-QVYTLPPSRDELTKNQVSLTCLVKGFYPS 385
Query: 129 DVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELD 168
D+ W N E +L S + S+L
Sbjct: 386 DIAVEWESNGQPENNYKTTPPVLDSDGS----FFLYSKLT 421
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 30.3 bits (68), Expect = 0.56
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 73 GNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQR--VLGVARQEKVNISCEVDANPPDV 130
G Y F+ + + N + T + GV ++S V
Sbjct: 813 GLYYLASFSASQNTMQSHIIFNNYITGTNPLKLGYIEIWGVGSVPVTSVSISVSGMVITP 872
Query: 131 KFSWTFNNSAETVNVAQAHI 150
F+ +++V +I
Sbjct: 873 SFNNDPTTQVLSIDVTDRNI 892
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 29.0 bits (65), Expect = 0.71
Identities = 21/135 (15%), Positives = 35/135 (25%), Gaps = 17/135 (12%)
Query: 11 SLNPDH-IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
P + + V C P V + + + + L + + R
Sbjct: 12 QALPSSLVPLEKPVTLRCQ--GPPGVDLYRLEKLSSSRYQD--------QAVLFIPAMKR 61
Query: 70 QSAGNYTCVGFNIEGDGE-SNAFFLNVMYSPTCKP--HQQRVLGVARQEKVNISCEVDAN 126
AG Y C N S+ L KP Q V+ V + C+
Sbjct: 62 SLAGRYRCSYQNGSLWSLPSDQLELVATGVF-AKPSLSAQPGPAVSSGGDVTLQCQ--TR 118
Query: 127 PPDVKFSWTFNNSAE 141
+F+
Sbjct: 119 YGFDQFALYKEGDPA 133
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 29.0 bits (64), Expect = 0.78
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 15/84 (17%)
Query: 61 SLVLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQEKVNIS 120
+L + +V+ Q AG+ ++ L VM V + + ++
Sbjct: 73 TLQIPQVSLQFAGSGNLT-LTLDRGILYQEVNLVVMK-------------VTQPDSNTLT 118
Query: 121 CEVDA-NPPDVKFSWTFNNSAETV 143
CEV P ++ N V
Sbjct: 119 CEVMGPTSPKMRLILKQENQEARV 142
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 29.0 bits (65), Expect = 0.82
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 9/114 (7%)
Query: 33 PPVYKVEWRHNNKTLHHNIAQGIIMTNQS-LVLQRVNRQSAGNYTCVGFNIEGDGE-SNA 90
+ + + N++ + + AG Y C + G + S+
Sbjct: 30 LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDP 89
Query: 91 FFLNVMYS---PTCKPHQQRVLGVARQEKVNISCEVDANPPDVKFSWTFNNSAE 141
L + + PT + V + V + C+ + P F +A
Sbjct: 90 LELVMTGAYSKPTLSALPSPL--VTSGKSVTLLCQ--SRSPMDTFLLCKERAAH 139
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 29.0 bits (65), Expect = 0.85
Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 8/137 (5%)
Query: 11 SLNPDH-IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVN 68
P + ++ V C + + + + N+ + +N
Sbjct: 8 WAEPHFMVPKEKQVTICCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMN 65
Query: 69 RQSAGNYTCVGFNIEGDGE-SNAFFLNVMYS-PTCKPHQQRVLGVARQEKVNISCEVDAN 126
+ AG Y+C+ E E SN L V T V EKV C +
Sbjct: 66 SRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR--LD 123
Query: 127 PPDVKFSWTFNNSAETV 143
F + V
Sbjct: 124 TATSMFLLLKEGRSSHV 140
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 28.2 bits (62), Expect = 0.87
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 14/93 (15%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYK--VEW-----------RHNNKTLHHNIAQGIIMTNQSL 62
++ D + K ++W + + + L
Sbjct: 23 SVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVEL 82
Query: 63 VLQRVNRQSAGNYTCVGFNIEGDGESNAFFLNV 95
+ +V G Y + +S F ++V
Sbjct: 83 HIGKVVLGDRGYYRLEVKAKDT-CDSCGFNIDV 114
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 29.2 bits (65), Expect = 0.89
Identities = 16/143 (11%), Positives = 35/143 (24%), Gaps = 6/143 (4%)
Query: 16 HIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNY 75
+ V C + +Y + + + T Q+ G Y
Sbjct: 117 TVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQAD-FPLGPATHGGTY 175
Query: 76 TCVGFNIEGDGE----SNAFFLNVMYSPTCKPHQQRVLGVARQEKVNISCEVDANPPDVK 131
C G + E S+ ++V +P+ ++ + +
Sbjct: 176 RCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAE-QKLISE 234
Query: 132 FSWTFNNSAETVNVAQAHILRSG 154
+ + H SG
Sbjct: 235 EDLNLDLVPRGSSSHHHHHHSSG 257
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 28.7 bits (64), Expect = 0.99
Identities = 25/151 (16%), Positives = 40/151 (26%), Gaps = 12/151 (7%)
Query: 11 SLNPDH-IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQ-SLVLQRVN 68
P I + V C + + + N+ + +
Sbjct: 9 WAEPGSVISRGNSVTIRCQ--GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMT 66
Query: 69 RQSAGNYTCVGFNIEGDGE-SNAFFLNVMYS---PTCKPHQQRVLGVARQEKVNISCEVD 124
AG Y C ++ G E S+ L V PT V V E V + C
Sbjct: 67 EHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPV--VTSGENVTLQCGSR 124
Query: 125 ANPPDVKFSWTFNNSAETVNVAQAHILRSGT 155
+F T + + + SG
Sbjct: 125 LRF--DRFILTEEGDHKLSWTLDSQLTPSGQ 153
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 29.1 bits (66), Expect = 1.0
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 117 VNISCEV-DANPPDVKFSWTFNNSAETVNVAQ--AHILRSGTL----SVVAYSPNSELDY 169
++ C + + P D+ W + S V + S + + + +
Sbjct: 134 ASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH 193
Query: 170 GTLIC 174
+ C
Sbjct: 194 NSYTC 198
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 28.7 bits (64), Expect = 1.4
Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 12/137 (8%)
Query: 11 SLNPDH-IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNR 69
S P + V C ++ + +S + V
Sbjct: 28 SAWPSAVVPRGGHVTLRCH--YRHRFNNFMLYKEDRIHIPIFHGR--IFQESFNMSPVTT 83
Query: 70 QSAGNYTCVGFNIEGDGE----SNAFFLNVMYSPTCKP-HQQRVLGVARQEKVNISCEVD 124
AGNYTC G + SN + V + V E+V + C D
Sbjct: 84 AHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSD 143
Query: 125 ANPPDVKFSWTFNNSAE 141
F ++
Sbjct: 144 IMF--EHFFLHKEGISK 158
Score = 26.8 bits (59), Expect = 5.6
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 61 SLVLQRVNRQSAGNYTCVGFNIEGDGE----SNAFFLNVMYSPTCKPHQ-QRVLGVARQE 115
+ + + AG Y C G + S+ + V Q V E
Sbjct: 175 NFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGE 234
Query: 116 KVNISCEVDANPPDVKFSWTFNNSAE 141
V +SC ++ + + A
Sbjct: 235 SVTLSCSSRSSY--DMYHLSREGGAH 258
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding,
oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL;
1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1
d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A*
2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A*
1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A*
1iqx_A* ...
Length = 646
Score = 28.7 bits (63), Expect = 1.5
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169
R ++ IS D F W + +G + A+ D
Sbjct: 362 YTRRNRRMVISFFTTIGNADYGFYWYLYLDGTI----EFEAKATGVVFTSAFPEG-GSDN 416
Query: 170 GTLICWGSNKIGHQRVPCV 188
+ + G HQ +
Sbjct: 417 ISQLAPGLGAPFHQHIFSA 435
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A
{Pichia angusta}
Length = 633
Score = 28.7 bits (63), Expect = 1.6
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169
+AR+ + + + + F+ + E +A +G LS + + + +
Sbjct: 367 VIARRREFVVQTIATVANAEYMLNIIFDQAGEIRIHVRA----TGILSTMPLDKDVTVPW 422
Query: 170 GTLICWGSNKIGHQRVPCV 188
GT + HQ +
Sbjct: 423 GTNVGPRVMAAYHQHMLSF 441
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human,
immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Length = 232
Score = 27.5 bits (62), Expect = 2.6
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 127 PPDVKFSWTFNNSAETVNVAQAH----ILRSG------TLSVVAYSPNSELDYGTLIC 174
P + FSW + N+++ + +LR G + + + ++C
Sbjct: 155 PDSITFSWKYKNNSDISST---RGFPSVLRGGKYAATSQVLLPS-KDVMAGTDEHVVC 208
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 27.2 bits (60), Expect = 3.6
Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 22/155 (14%)
Query: 27 CDIVAVPPVYKVEWRHNNKTLHHNIAQ-------GIIMTNQSLVLQRVNRQSAGNYTCVG 79
DI P + W ++ +H + + L + + + + C
Sbjct: 42 VDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKV 101
Query: 80 FNIEGDGESNAFFLNVMYSPTCKPHQQRVL------GVARQEKVNISCEV-DANPPDVKF 132
G A + P P +V Q +V+I+C V PPD+
Sbjct: 102 ----NSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYT 157
Query: 133 SWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSEL 167
W N + + + Y S+L
Sbjct: 158 EWKMNGQPQENYKNTPPTMDTDGS----YFLYSKL 188
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 27.1 bits (60), Expect = 3.6
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSG-----TLSVVAYSPNSELDY 169
PP V +W N + T V++ L +S + + P+++ Y
Sbjct: 117 PPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIY 164
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A
{Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A
1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A
7paz_A 1py0_A*
Length = 123
Score = 26.6 bits (58), Expect = 3.8
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 18/88 (20%)
Query: 19 EDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC- 77
+ + F+ + P V + +K + + +I +S N
Sbjct: 12 AEGAMVFEPAYIKANPGDTVTFIPVDKGHNVESIKDMIPEGAE------KFKSKINENYV 65
Query: 78 VGFNIEGDGESNAFFLNVMYSPTCKPHQ 105
+ G Y C PH
Sbjct: 66 LTVTQPGA-----------YLVKCTPHY 82
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system,
SELF antigen, invariant chain, CLIP; 2.20A {Homo
sapiens}
Length = 207
Score = 27.0 bits (60), Expect = 4.0
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSG-----TLSVVAYSPNSELDY 169
PP V +W N T V++ L + + P++E Y
Sbjct: 129 PPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVY 176
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein,
topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A
{Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB:
1rky_A* 1n9e_A*
Length = 747
Score = 27.6 bits (60), Expect = 4.1
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 110 GVARQEKVNISCEVDANPPDVKFSWTFNNSAETVNVAQAHILRSGTLSVVAYSPNSELDY 169
+ + +N+ D F + F + + +G + ++P + Y
Sbjct: 420 AITQNPTLNVRFISTIGNADYNFLYKFFLDGTL----EVSVRAAGYIQAGYWNPETSAPY 475
Query: 170 GTLICWGSNKIGHQ 183
G I + H
Sbjct: 476 GLKIHDVLSGSFHD 489
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 26.7 bits (59), Expect = 4.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 111 VARQEKVNISCEV-DANPPDVKFSWTFNNSAETVNV 145
+A E V ++C +P DV W +
Sbjct: 119 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREK 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 4.3
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
Query: 12 LNP--DHIKED---SDVYF---DCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLV 63
L P D I +D ++V F D I PVY + + L +I++ I+ ++
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQI----PVYDTFDGSDLRVLSGSISERIV---DCII 484
Query: 64 LQRVN 68
V
Sbjct: 485 RLPVK 489
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 27.2 bits (60), Expect = 4.7
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 23/155 (14%)
Query: 21 SDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGII-------MTNQSLVLQRVNRQSAG 73
D+ D P + W +N +H Q +L + + +
Sbjct: 255 VDISKD------DPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGK 308
Query: 74 NYTCVGFNIEGDGESNAFFLNVMYSPTCKPHQQRVLGVARQE-----KVNISCEV-DANP 127
+ C + + + Q +E KV+++C + D P
Sbjct: 309 EFKC---RVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFP 365
Query: 128 PDVKFSWTFNNSAE-TVNVAQAHILRSGTLSVVAY 161
D+ W + A Q + G+ V +
Sbjct: 366 EDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSK 400
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 26.7 bits (59), Expect = 4.7
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSG-----TLSVVAYSPNSELDY 169
PP + +W N+ + V + + LS + + P+ + Y
Sbjct: 148 PPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIY 195
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 26.9 bits (59), Expect = 5.7
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 114 QEKVNISCEV-DANPPDVKFSWTFNNSAETVNVAQ 147
++K +C V ++ D +W T V +
Sbjct: 312 RDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEE 346
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 26.2 bits (57), Expect = 7.8
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 114 QEKVNISCEV-DANPPDVKFSWTFNNSAETVNV 145
++K ++C + + P D+ W N
Sbjct: 234 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR 266
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 25.8 bits (57), Expect = 8.0
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 127 PPDVKFSWTFNNSAETVNVAQAHILRSG-----TLSVVAYSPNSELDY 169
PP V +W N T V++ L + + P++E Y
Sbjct: 114 PPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVY 161
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 25.5 bits (56), Expect = 8.2
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 36 YKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAGNYTC 77
Y + + + + T + VN G+Y+C
Sbjct: 39 YNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSC 80
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 26.1 bits (58), Expect = 8.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 167 LDYGTLICWGSNKIGHQRVP 186
+ G +I WG N G VP
Sbjct: 156 VKNGGVIAWGDNYFGQTTVP 175
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 25.2 bits (55), Expect = 8.6
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 16/95 (16%)
Query: 17 IKEDSDVYFDCDIVAVPPVYKVEWRHNNKTL----HHNIAQG--IIMTNQ-----SLVLQ 65
+ E C V ++W + + + I + S+ +
Sbjct: 18 VVEGGTAILTC-RVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76
Query: 66 RVNRQSAGNYTCVGFNIEGDGESNAF-FLNVMYSP 99
V+ G YTC + + +L V+ P
Sbjct: 77 DVSLSDEGQYTCS---LFTMPVKTSKAYLTVLGVP 108
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 25.7 bits (56), Expect = 9.9
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 14 PDHIKEDSDVYFDCDIVAVPPVYKVEWRHNNKTLHHNIAQGIIMTNQSLVLQRVNRQSAG 73
P E S+ C+++ V +++ + L + + +
Sbjct: 99 PMIYWECSNATLTCEVLEGTDV-ELKLYQGKEHLR---------SLRQKTMSYQWTNLRA 148
Query: 74 NYTCVGFN 81
+ C N
Sbjct: 149 PFKCKAVN 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,114,633
Number of extensions: 168981
Number of successful extensions: 1097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 400
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)