Query psy10920
Match_columns 271
No_of_seqs 6 out of 8
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 21:55:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00189 IL2 Interleukin-2 f 58.3 9.3 0.0002 33.6 2.7 52 17-76 63-116 (154)
2 PF00715 IL2: Interleukin 2 Th 51.0 9.6 0.00021 33.3 1.7 46 17-70 57-104 (145)
3 COG4071 Uncharacterized protei 26.6 37 0.0008 32.2 1.5 37 20-59 227-263 (278)
4 KOG4809|consensus 20.4 83 0.0018 33.1 2.7 43 21-63 417-460 (654)
5 PF05633 DUF793: Protein of un 18.0 1.2E+02 0.0025 30.1 3.0 34 11-44 298-331 (389)
6 PF12146 Hydrolase_4: Putative 14.7 78 0.0017 23.5 0.8 7 80-86 47-53 (79)
7 PF12498 bZIP_C: Basic leucine 13.0 82 0.0018 25.8 0.5 12 63-74 8-20 (115)
8 PF07426 Dynactin_p22: Dynacti 10.9 1.6E+02 0.0034 25.6 1.6 73 3-75 54-139 (174)
9 PF10157 DUF2365: Uncharacteri 10.7 1.8E+02 0.0039 25.0 1.9 15 46-60 124-138 (149)
10 TIGR00343 pyridoxal 5'-phospha 10.4 1.8E+02 0.0038 27.9 1.9 22 23-44 149-170 (287)
No 1
>smart00189 IL2 Interleukin-2 family. Interleukin-2 is a cytokine produced by T-helper cells in response to antigenic or mitogenic stimulation. This protein is required for T-cell proliferation and other activities crucial to the regulation of the immune response.
Probab=58.28 E-value=9.3 Score=33.59 Aligned_cols=52 Identities=31% Similarity=0.440 Sum_probs=35.2
Q ss_pred hccccchhhhhhhhcchhHHhhhhcchhHHhhhhhhhHHHhhhccc-chHH-hhhhccceee
Q psy10920 17 KFNVHGMAEEVKHVHGMAEEVKNVHGMAEEVKNVHGIAEEVKNVHG-MAEE-VKNVHGMAEE 76 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~ae~-v~~vh~~~~~ 76 (271)
||..--.|-|+||..-++||+|.+ |||-|+ | +-||.|- |++| +.|+..-.-+
T Consensus 63 KfymPkkaTElkHLQCL~eELk~L----e~VL~l---a-qsKn~~l~~~k~~isNInvtvl~ 116 (154)
T smart00189 63 KFYLPKQATELKHLQCLEEELKPL----EEVLDL---A-QSKNFQLEHIKDFISNINVTVLK 116 (154)
T ss_pred eecCcchhhHhHHHHHHHHHHHhH----HHHhcc---h-hccccchhhHHHHHhhhhheeee
Confidence 677788899999999999999876 444433 2 3466665 5666 5555443333
No 2
>PF00715 IL2: Interleukin 2 This family is a subset of the SCOP family.; InterPro: IPR000779 T-Lymphocytes regulate the growth and differentiation of certain lymphopoietic and haemopoietic cells through the release of various secreted protein factors []. These factors, which include interleukin-2 (IL2), are secreted by lectin- or antigen-stimulated T-cells, and have various physiological effects. IL2 is a lymphokine that induces the proliferation of responsive T-cells. In addition, it acts on some B-cells, via receptor-specific binding [], as a growth factor and antibody production stimulant []. The protein is secreted as a single glycosylated polypeptide, and cleavage of a signal sequence is required for its activity []. Solution NMR suggests that the structure of IL2 comprises a bundle of 4 helices (termed A-D), flanked by 2 shorter helices and several poorly-defined loops. Residues in helix A, and in the loop region between helices A and B, are important for receptor binding. Secondary structure analysis has suggested similarity to IL4 and granulocyte-macrophage colony stimulating factor (GMCSF) [].; GO: 0005134 interleukin-2 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3QAZ_M 2B5I_A 1Z92_A 3QB1_F 2ERJ_H 1NBP_A 1PY2_C 1IRL_A 1QVN_A 3INK_C ....
Probab=51.05 E-value=9.6 Score=33.32 Aligned_cols=46 Identities=39% Similarity=0.546 Sum_probs=29.8
Q ss_pred hccccchhhhhhhhcchhHHhhhhcchhHHhhhhhhhHHHhhhccc-chHH-hhhh
Q psy10920 17 KFNVHGMAEEVKHVHGMAEEVKNVHGMAEEVKNVHGIAEEVKNVHG-MAEE-VKNV 70 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~ae~-v~~v 70 (271)
||.+--.|-|+||..-++||+|.+ |||-|+ ++-||+|. |++| +.|+
T Consensus 57 KfYmPkkaTElkhLQCL~eELkpL----eeVL~l----~qSKn~~l~~~~~~isNI 104 (145)
T PF00715_consen 57 KFYMPKKATELKHLQCLEEELKPL----EEVLNL----AQSKNFHLEDIKESISNI 104 (145)
T ss_dssp EBEEBST-SSGGGGHHHHTTHHHH----HHHHHH----SHGGGSSSSH-HHHHHHH
T ss_pred eecCCCCcchhHHHHHHHHHHHHH----HHHHhh----hhccCcCcccHHHHHHhh
Confidence 677778899999999999999986 344433 23455554 5555 4444
No 3
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.58 E-value=37 Score=32.20 Aligned_cols=37 Identities=32% Similarity=0.341 Sum_probs=26.7
Q ss_pred ccchhhhhhhhcchhHHhhhhcchhHHhhhhhhhHHHhhh
Q psy10920 20 VHGMAEEVKHVHGMAEEVKNVHGMAEEVKNVHGIAEEVKN 59 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (271)
+--|||++..+| .+.|+|..|+||+.|-.-|.||+-|
T Consensus 227 l~~~Ae~~~r~~---~~r~tvyd~lee~~~p~~iteE~L~ 263 (278)
T COG4071 227 LTRIAEICDRVH---KTRKTVYDVLEEYSNPYVITEEILE 263 (278)
T ss_pred HHHHHHHHHhhC---cchhhHHHHHHHhCCCccchHHHHh
Confidence 455777776666 3567888888888888888887654
No 4
>KOG4809|consensus
Probab=20.43 E-value=83 Score=33.10 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=36.9
Q ss_pred cchhhhhhhhcchhHHhhhhcchhH-HhhhhhhhHHHhhhcccc
Q psy10920 21 HGMAEEVKHVHGMAEEVKNVHGMAE-EVKNVHGIAEEVKNVHGM 63 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 63 (271)
-||++-++||-|-+.+++..-|||. ||+..--|..||+|..-|
T Consensus 417 pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnD 460 (654)
T KOG4809|consen 417 PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKND 460 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5889999999999999999999884 788888899999887655
No 5
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=18.01 E-value=1.2e+02 Score=30.06 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=15.9
Q ss_pred hHHHhhhccccchhhhhhhhcchhHHhhhhcchh
Q psy10920 11 MAEEIKKFNVHGMAEEVKHVHGMAEEVKNVHGMA 44 (271)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (271)
++|||||-+..|-.--+|..|.|-.-++++|.++
T Consensus 298 I~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~ 331 (389)
T PF05633_consen 298 INEEIKKKERKGSCGLLKELQQVEASVRELHELI 331 (389)
T ss_pred HHHHHhhccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 5688887655532222333333333344444333
No 6
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=14.71 E-value=78 Score=23.48 Aligned_cols=7 Identities=57% Similarity=0.966 Sum_probs=3.1
Q ss_pred eeecCCC
Q psy10920 80 CAWDGRG 86 (271)
Q Consensus 80 ~~~s~~G 86 (271)
.++|.+|
T Consensus 47 ~~~D~rG 53 (79)
T PF12146_consen 47 FAYDHRG 53 (79)
T ss_pred EEECCCc
Confidence 3444444
No 7
>PF12498 bZIP_C: Basic leucine-zipper C terminal; InterPro: IPR020983 Basic leucine-zipper (bZIP) proteins are found in eukaryotes. They are typically between 174 and 411 amino acids in length. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin []. This entry represents a C-terminal domain found in bZIP proteins. It is found in association with PF00170 from PFAM. There is a conserved KVK sequence motif and a single completely conserved residue K that may be functionally important.
Probab=13.02 E-value=82 Score=25.83 Aligned_cols=12 Identities=75% Similarity=0.958 Sum_probs=8.5
Q ss_pred chHH-hhhhccce
Q psy10920 63 MAEE-VKNVHGMA 74 (271)
Q Consensus 63 ~ae~-v~~vh~~~ 74 (271)
|||| ||.|.++-
T Consensus 8 MAEe~VkRvTg~n 20 (115)
T PF12498_consen 8 MAEETVKRVTGMN 20 (115)
T ss_pred HHHHHHHHHhccC
Confidence 6777 77777754
No 8
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=10.86 E-value=1.6e+02 Score=25.65 Aligned_cols=73 Identities=19% Similarity=0.392 Sum_probs=37.3
Q ss_pred hhhhhccchHHHhhhccc------cchhhhhhh--hcchhHHhhhhcchhHHhhhhhhh--HHHhhhcccchHH---hhh
Q psy10920 3 EEVKNVHGMAEEIKKFNV------HGMAEEVKH--VHGMAEEVKNVHGMAEEVKNVHGI--AEEVKNVHGMAEE---VKN 69 (271)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~ae~---v~~ 69 (271)
|-|+-++..++||.++== ..+...+|- +--++++++..+-+-+.|+..-.+ ++.+++|-..... .+.
T Consensus 54 e~i~~l~k~~~eL~~YLDP~~~e~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~i~~vp~~~~kL~~L~~ 133 (174)
T PF07426_consen 54 ERIKELFKRIEELNKYLDPNFIEEIQLPDSAKLQIILAEEDEIKSTAELLEKIKSLEPVLDSESIRNVPELCDKLQKLSQ 133 (174)
T ss_pred HHHHHHHHHHHHHHHHcCchhhhhcccchHHHHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHHHhhhHHHHHHHHHHHH
Confidence 345666677777776322 223333332 234445555555555555554433 3456666666555 444
Q ss_pred hcccee
Q psy10920 70 VHGMAE 75 (271)
Q Consensus 70 vh~~~~ 75 (271)
+|..|.
T Consensus 134 ~~~~Q~ 139 (174)
T PF07426_consen 134 IHLEQQ 139 (174)
T ss_pred HHHHHH
Confidence 555543
No 9
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=10.74 E-value=1.8e+02 Score=25.04 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=6.4
Q ss_pred HhhhhhhhHHHhhhc
Q psy10920 46 EVKNVHGIAEEVKNV 60 (271)
Q Consensus 46 ~~~~~~~~~~~~~~~ 60 (271)
+.+.|+.+|.++|.+
T Consensus 124 ~M~~v~~La~qIK~I 138 (149)
T PF10157_consen 124 SMKPVYKLAQQIKDI 138 (149)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 10
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=10.40 E-value=1.8e+02 Score=27.89 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=16.3
Q ss_pred hhhhhhhhcchhHHhhhhcchh
Q psy10920 23 MAEEVKHVHGMAEEVKNVHGMA 44 (271)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~ 44 (271)
+.|-|+|+.|+-+|++++.+|.
T Consensus 149 v~~av~hlr~~~~~~~~~~~~~ 170 (287)
T TIGR00343 149 IVEAVRHMRKINEEIRQIQNML 170 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4567788888888888777763
Done!