Query psy10920
Match_columns 271
No_of_seqs 6 out of 8
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 21:55:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m48_A Interleukin-2; four-hel 45.4 5.4 0.00018 33.3 0.5 27 17-43 43-69 (133)
2 4ay9_A Glycoprotein hormones, 13.1 1E+02 0.0035 24.3 2.2 32 233-264 3-34 (92)
3 1zpy_A Hypothetical protein NE 12.5 82 0.0028 24.6 1.5 7 23-29 57-63 (95)
4 2cly_A ATP synthase B chain, m 10.2 1.4E+02 0.0049 25.7 2.4 15 38-52 142-156 (214)
5 3klu_A Uncharacterized protein 10.0 1.8E+02 0.0062 24.0 2.9 41 12-55 98-138 (157)
6 3qfl_A MLA10; coiled-coil, (CC 9.0 1.9E+02 0.0066 21.5 2.4 18 50-67 57-74 (115)
7 1rh1_A Colicin B; FEPA, cytoto 7.7 2.2E+02 0.0075 28.1 2.8 12 51-62 349-360 (511)
8 2js5_A Uncharacterized protein 7.0 2.6E+02 0.0087 20.9 2.3 7 13-19 10-16 (71)
9 3edu_A Beta-I spectrin, spectr 5.9 4.9E+02 0.017 20.2 3.5 13 54-66 107-119 (218)
10 2yvk_A Methylthioribose-1-phos 5.6 4.7E+02 0.016 23.9 3.7 67 4-70 55-124 (374)
No 1
>1m48_A Interleukin-2; four-helix bundle, small molecule complex, cytokine; HET: FRG; 1.95A {Homo sapiens} SCOP: a.26.1.2 PDB: 1m47_A* 1m49_A* 1m4c_A 1pw6_A* 1z92_A 2b5i_A* 1py2_A* 3ink_C 2erj_D 1qvn_A* 1irl_A 1m4b_A* 1m4a_A* 1nbp_A* 3qb1_A 3qaz_A
Probab=45.39 E-value=5.4 Score=33.26 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.5
Q ss_pred hccccchhhhhhhhcchhHHhhhhcch
Q psy10920 17 KFNVHGMAEEVKHVHGMAEEVKNVHGM 43 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (271)
||..--.|-|+||..-++||+|++.++
T Consensus 43 KfymPkkaTElkHLQCL~eELkpLe~V 69 (133)
T 1m48_A 43 KFYMPKKATELKHLQCLEEELKPLEEV 69 (133)
T ss_dssp CBCCBSCCCSGGGGHHHHTTHHHHHHH
T ss_pred eecCCcchhHHHHHHHHHHHHHHHHHH
Confidence 566777899999999999999987543
No 2
>4ay9_A Glycoprotein hormones, alpha polypeptide; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1dz7_A 1e9j_A* 1fl7_A* 1hcn_A* 1hd4_A* 1xwd_A* 1hrp_A* 1qfw_A*
Probab=13.14 E-value=1e+02 Score=24.31 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=23.5
Q ss_pred cCCCCeeEEEecCCceeeeeeeeeeeeeeeEe
Q psy10920 233 DGRGGKECAWDSRGGKDIVSRKIYQCVKIAFK 264 (271)
Q Consensus 233 s~rg~~tC~ysSrgGy~~~~~~~~~~~~~~~~ 264 (271)
+.||=.+|.+....-+.-..|.||||+---|.
T Consensus 3 d~qgC~EC~L~~N~~FS~~~~PiyQC~GCCFS 34 (92)
T 4ay9_A 3 DVQDCPECTLQENPLFSQPGAPILQCMGCCFS 34 (92)
T ss_dssp --CCCCBSEEEECTTTCBTTBCCEEEEEEEEE
T ss_pred CcCCCCccCcccCccccCCCCceEEecceeec
Confidence 46777888888777766667889999876663
No 3
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=12.55 E-value=82 Score=24.57 Aligned_cols=7 Identities=43% Similarity=0.511 Sum_probs=2.7
Q ss_pred hhhhhhh
Q psy10920 23 MAEEVKH 29 (271)
Q Consensus 23 ~~~~~~~ 29 (271)
+.||..|
T Consensus 57 adEEkeH 63 (95)
T 1zpy_A 57 RDEEKEH 63 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 4
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=10.19 E-value=1.4e+02 Score=25.72 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=6.1
Q ss_pred hhhcchhHHhhhhhh
Q psy10920 38 KNVHGMAEEVKNVHG 52 (271)
Q Consensus 38 ~~~~~~~~~~~~~~~ 52 (271)
+++|-.+.|||++..
T Consensus 142 e~~~~v~~EvK~rLD 156 (214)
T 2cly_A 142 ERLHRVYREVKNRLD 156 (214)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 5
>3klu_A Uncharacterized protein YQBN; NESG, structural genomics, PSI-2,protein structure initiative, northeast structural genomics consortium; 2.20A {Bacillus subtilis}
Probab=10.00 E-value=1.8e+02 Score=23.98 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHhhhccccchhhhhhhhcchhHHhhhhcchhHHhhhhhhhHH
Q psy10920 12 AEEIKKFNVHGMAEEVKHVHGMAEEVKNVHGMAEEVKNVHGIAE 55 (271)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (271)
+|-.++|+|.+-.|-++-+--+|-|..++ ++.|..+-|..+
T Consensus 98 ~eLq~sygv~~~~ell~kmL~l~GE~~~l---~~~V~elnGf~~ 138 (157)
T 3klu_A 98 KELREAYKTEDPVEVAKRVLSVGGEYANW---LNKAIEINGFDD 138 (157)
T ss_dssp HHHHHHTTCSCHHHHHHHHTCSHHHHHHH---HHHHHHHTTCC-
T ss_pred HHHHHHhCCCCHHHHHHHHhcCchhHHHH---HHHHHHHcCcCc
Confidence 45556777777655555544344444332 344444445443
No 6
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=8.96 E-value=1.9e+02 Score=21.54 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=13.1
Q ss_pred hhhhHHHhhhcccchHHh
Q psy10920 50 VHGIAEEVKNVHGMAEEV 67 (271)
Q Consensus 50 ~~~~~~~~~~~~g~ae~v 67 (271)
|..-.++|+++-=|+||+
T Consensus 57 vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 57 DKLWADEVRELSYVIEDV 74 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677888888888884
No 7
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=7.70 E-value=2.2e+02 Score=28.07 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=8.5
Q ss_pred hhhHHHhhhccc
Q psy10920 51 HGIAEEVKNVHG 62 (271)
Q Consensus 51 ~~~~~~~~~~~g 62 (271)
.-||+++||.||
T Consensus 349 keIA~~lkn~KG 360 (511)
T 1rh1_A 349 REIAENINNFQG 360 (511)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhhccC
Confidence 347777777777
No 8
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=6.98 E-value=2.6e+02 Score=20.92 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=3.0
Q ss_pred HHhhhcc
Q psy10920 13 EEIKKFN 19 (271)
Q Consensus 13 ~~~~~~~ 19 (271)
.||||.|
T Consensus 10 kevkKL~ 16 (71)
T 2js5_A 10 AKLKKLN 16 (71)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 9
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=5.91 E-value=4.9e+02 Score=20.18 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=6.3
Q ss_pred HHHhhhcccchHH
Q psy10920 54 AEEVKNVHGMAEE 66 (271)
Q Consensus 54 ~~~~~~~~g~ae~ 66 (271)
|.++...+.++++
T Consensus 107 a~~~~~F~~~~~e 119 (218)
T 3edu_A 107 SYDLHRYFYTGAE 119 (218)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555555
No 10
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=5.57 E-value=4.7e+02 Score=23.91 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhhhccchHHHhhhccccchhhh-hhhhcchhHHhhhhc--chhHHhhhhhhhHHHhhhcccchHHhhhh
Q psy10920 4 EVKNVHGMAEEIKKFNVHGMAEE-VKHVHGMAEEVKNVH--GMAEEVKNVHGIAEEVKNVHGMAEEVKNV 70 (271)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~ae~v~~v 70 (271)
+++++..+++.||...|+|-..- +.-..||+..+++.. ...|-...+...++.+++-.-.|--+.|.
T Consensus 55 ~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~~~~~~~l~~~l~~~~~~L~~aRPtavnL~~a 124 (374)
T 2yvk_A 55 ELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSWA 124 (374)
T ss_dssp EECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHTTCSSCHHHHHH
T ss_pred EeCCHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Done!