Query psy10920
Match_columns 271
No_of_seqs 6 out of 8
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 21:55:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10920.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10920hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m47a_ a.26.1.2 (A:) Interleu 49.9 3 0.00022 32.6 1.6 48 17-72 38-86 (128)
2 d2b5ib1 b.1.2.1 (B:6-103) Inte 12.3 53 0.0039 24.3 2.3 16 159-174 4-19 (98)
3 d1g4us1 a.24.11.1 (S:167-296) 11.1 35 0.0026 26.3 0.9 23 43-65 100-122 (130)
4 d1zavu1 a.108.1.1 (U:1-30) Rib 9.5 44 0.0032 20.2 0.7 22 8-29 3-24 (30)
5 d1jtva_ c.2.1.2 (A:) Human est 9.5 93 0.0068 24.0 3.0 11 60-70 229-239 (285)
6 d1m07a_ d.5.1.1 (A:) Amphibian 9.2 1.4E+02 0.01 21.3 3.6 11 60-70 41-51 (111)
7 d2ghfa2 g.37.1.1 (A:9-44) Zinc 7.7 35 0.0025 21.4 -0.3 9 84-92 7-15 (36)
8 d1hy5a_ a.24.11.1 (A:) YopE {Y 6.5 1.1E+02 0.0077 23.3 1.9 24 37-60 93-116 (120)
9 d1fgja_ a.138.1.3 (A:) Hydroxy 6.3 1E+02 0.0076 25.7 2.0 21 25-45 463-483 (499)
10 d1rnfa_ d.5.1.1 (A:) Ribonucle 6.2 1.7E+02 0.013 21.0 2.9 50 60-124 47-97 (120)
No 1
>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.90 E-value=3 Score=32.58 Aligned_cols=48 Identities=38% Similarity=0.530 Sum_probs=33.0
Q ss_pred hccccchhhhhhhhcchhHHhhhhcchhHHhhhhhhhHHHhhhcccchHH-hhhhcc
Q psy10920 17 KFNVHGMAEEVKHVHGMAEEVKNVHGMAEEVKNVHGIAEEVKNVHGMAEE-VKNVHG 72 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ae~-v~~vh~ 72 (271)
||..--.|-|+||..-++||+|.+ |||-|+ | +-||+|-.++| +.|+..
T Consensus 38 KFymPKkaTELkHLQCL~eELk~L----e~VL~l---a-qsKn~~l~~k~~isNinv 86 (128)
T d1m47a_ 38 KFYMPKKATELKHLQCLEEELKPL----EEVLNL---A-QSKNFHLRPRDLISNINV 86 (128)
T ss_dssp CBCCBSCCCSGGGGHHHHTTHHHH----HHHHHH---H-C--CCSSCHHHHHHHHHH
T ss_pred eecCCchhhHhHHHHHHHHHHHHH----HHHhcc---h-hccCcCcchHHHHHhhhh
Confidence 677777899999999999999876 444443 2 45777776666 555443
No 2
>d2b5ib1 b.1.2.1 (B:6-103) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.27 E-value=53 Score=24.27 Aligned_cols=16 Identities=31% Similarity=0.941 Sum_probs=9.3
Q ss_pred eEEEcCCCceeeEEcC
Q psy10920 159 ECAWDSRGGKECAWDG 174 (271)
Q Consensus 159 TCsysSR~g~tCays~ 174 (271)
||-|+||-..-|.|+-
T Consensus 4 tCfYnSrAnisC~Wsp 19 (98)
T d2b5ib1 4 TCFYNSRAQISCVWSQ 19 (98)
T ss_dssp EEEECSSSEEEEEEEC
T ss_pred EEEecCCcceEEEecC
Confidence 5666666666666643
No 3
>d1g4us1 a.24.11.1 (S:167-296) SptP tyrosine phosphatase {Salmonella typhimurium [TaxId: 90371]}
Probab=11.13 E-value=35 Score=26.35 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=13.8
Q ss_pred hhHHhhhhhhhHHHhhhcccchH
Q psy10920 43 MAEEVKNVHGIAEEVKNVHGMAE 65 (271)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~g~ae 65 (271)
.-|-++.+|.|++||++|+-..|
T Consensus 100 l~ea~~~Lh~~~~eva~l~~~ve 122 (130)
T d1g4us1 100 LTQAVKKIHVIAKELKNVTAELE 122 (130)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777776654433
No 4
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.50 E-value=44 Score=20.20 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=15.2
Q ss_pred ccchHHHhhhccccchhhhhhh
Q psy10920 8 VHGMAEEIKKFNVHGMAEEVKH 29 (271)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ 29 (271)
+..+.|.|.|..|.-+||-||.
T Consensus 3 ~eeiv~aiekltvaelaelvk~ 24 (30)
T d1zavu1 3 IDEIIEAIEKLTVSELAELVKK 24 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3445677888888777777664
No 5
>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.46 E-value=93 Score=23.96 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=8.5
Q ss_pred cccchHHhhhh
Q psy10920 60 VHGMAEEVKNV 70 (271)
Q Consensus 60 ~~g~ae~v~~v 70 (271)
--+++|||+++
T Consensus 229 ~~~~PeeVA~~ 239 (285)
T d1jtva_ 229 AAQNPEEVAEV 239 (285)
T ss_dssp HCBCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 35789999875
No 6
>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog (Rana catesbeiana) [TaxId: 8400]}
Probab=9.16 E-value=1.4e+02 Score=21.33 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=8.4
Q ss_pred cccchHHhhhh
Q psy10920 60 VHGMAEEVKNV 70 (271)
Q Consensus 60 ~~g~ae~v~~v 70 (271)
+|+..++|+.|
T Consensus 41 IH~~~~~V~av 51 (111)
T d1m07a_ 41 IISSATTVKAI 51 (111)
T ss_dssp EESCHHHHHGG
T ss_pred EeCCHHHhhhh
Confidence 67778887776
No 7
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.70 E-value=35 Score=21.42 Aligned_cols=9 Identities=44% Similarity=0.999 Sum_probs=5.3
Q ss_pred CCCCceeEE
Q psy10920 84 GRGGKECAW 92 (271)
Q Consensus 84 ~~Gg~tC~~ 92 (271)
++||++|.|
T Consensus 7 ~qGGyECKY 15 (36)
T d2ghfa2 7 VEGGYECKY 15 (36)
T ss_dssp CCSSEECSS
T ss_pred ccCCeeeee
Confidence 456666654
No 8
>d1hy5a_ a.24.11.1 (A:) YopE {Yersinia pestis [TaxId: 632]}
Probab=6.48 E-value=1.1e+02 Score=23.26 Aligned_cols=24 Identities=13% Similarity=0.421 Sum_probs=15.7
Q ss_pred hhhhcchhHHhhhhhhhHHHhhhc
Q psy10920 37 VKNVHGMAEEVKNVHGIAEEVKNV 60 (271)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~ 60 (271)
|.+-+-+-|-++.+|.|++||+++
T Consensus 93 Vasa~~L~ea~~ql~~i~~ev~~l 116 (120)
T d1hy5a_ 93 VASGVDLTQAANEIKGLAQQMQKL 116 (120)
T ss_dssp HTTTCCCHHHHHHHHHHHHHTHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777787777764
No 9
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO {Nitrosomonas europaea [TaxId: 915]}
Probab=6.28 E-value=1e+02 Score=25.66 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=10.3
Q ss_pred hhhhhhcchhHHhhhhcchhH
Q psy10920 25 EEVKHVHGMAEEVKNVHGMAE 45 (271)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~ 45 (271)
...-|.||++|-.+++.-|-+
T Consensus 463 ~d~~~~~g~~~~~~~~~~i~~ 483 (499)
T d1fgja_ 463 GGWTYTEGWGPMNRAYVEIQD 483 (499)
T ss_dssp GGTSSSSTHHHHHHHHHHHHH
T ss_pred cchhhhccHHHHHHHHHHHHH
Confidence 345555665554444443333
No 10
>d1rnfa_ d.5.1.1 (A:) Ribonuclease 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.15 E-value=1.7e+02 Score=21.01 Aligned_cols=50 Identities=14% Similarity=0.379 Sum_probs=26.7
Q ss_pred cccchHHhhhhccceeeEEeeeecCCCCceeEEcCCCceeeeeccCCceeeEEcCCCCee-eEecc
Q psy10920 60 VHGMAEEVKNVHGMAEEVKKCAWDGRGGKECAWDGRGGKECAWDSTGGKECAWDGRGGKE-CAWDS 124 (271)
Q Consensus 60 ~~g~ae~v~~vh~~~~~v~~~~~s~~Gg~tC~~s~Rgg~tCay~s~g~~tCsySsRgg~~-Ca~ss 124 (271)
+|+.+++|+.|..-. .-+|. .+..-|..++...++|.+++...+. |+|..
T Consensus 47 IH~~~~~V~~vC~~~------------~~~Ck---n~~~nC~~S~~~vT~C~lt~gs~~P~C~Y~~ 97 (120)
T d1rnfa_ 47 IHEDIWNIRSICSTT------------NIQCK---NGKMNCHEGVVKVTDCRDTGSSRAPNCRYRA 97 (120)
T ss_dssp ECSCHHHHHGGGGSC------------CBCCT---TSCSCEEEEEEEEEEEEECSSSCTTSCCEEE
T ss_pred ECCCHHHHhhhhcCC------------CCCCc---CCCceeecCccceEEEEcCCCCCCCCCceee
Confidence 677888888876542 11231 1223455555556777666543333 55543
Done!