BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10921
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 58/251 (23%)
Query: 2 ELNLKFTVNHL----NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDY 57
++ LKF L E L +RL+ RV M++ G ++E+ Q + Y++++ P+
Sbjct: 182 KITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNK----FTPEQ 237
Query: 58 TKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGRE 117
+ G++Q IGFKEF +L ++D
Sbjct: 238 CEN----------------------------GVWQVIGFKEFLPWLT-----GKTDDNTV 264
Query: 118 IFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALH 177
++ + QYAK+Q +W++ L+ PD + +Y L+ TDL+ W + + A+
Sbjct: 265 KLEDCIERMKTRTRQYAKRQVKWIKKMLI--PD-IKGDIYLLDATDLSQWDTNASQRAIA 321
Query: 178 IVQSYLDN------RAPTGIEPLAQ--EYVDPSYYNAGTFNCDVC------NRLFIGQHQ 223
I ++ N RAP +E L E + + C+VC N + IG+
Sbjct: 322 ISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKY 381
Query: 224 YEQHMNSVKHR 234
++ H+ S +H+
Sbjct: 382 WKIHLGSRRHK 392
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 86 YTKGI-----FQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQW 140
Y +GI Q+IG+KE ++YL G +++D L + +YAK+Q W
Sbjct: 228 YDRGIRDCQSVQAIGYKEXYDYL----------DGNVTLEEAIDTLKRNSRRYAKRQLTW 277
Query: 141 VRNR 144
RN+
Sbjct: 278 FRNK 281
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 12 LNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTK-GIFQSIGFKEF 70
++ +VL L RV M++ G+ +EL +F+ +ED E T+ G+ ++IG EF
Sbjct: 182 VSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDED----HDEDSATRTGLRKAIGVPEF 237
Query: 71 HNYL 74
Y
Sbjct: 238 DRYF 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,155,195
Number of Sequences: 62578
Number of extensions: 334349
Number of successful extensions: 1136
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 8
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)